genome.fa.s8450.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008450.1 Hibiscus syriacus cultivar Beakdansim tig00111255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106858

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696--741	19	2.4	19	96	0	83	32	19	32	15	1.93
1768--1844	26	3.0	26	81	9	68	22	12	5	59	1.53
1792--1844	25	2.1	25	89	6	81	22	11	1	64	1.36
3932--4065	70	1.9	71	90	4	218	29	20	14	34	1.93
6214--6367	75	2.1	75	83	2	193	34	16	20	29	1.94
7712--7771	22	2.7	22	84	0	84	36	13	13	36	1.84
8423--8609	76	2.5	76	90	1	277	25	19	18	36	1.95
8552--8799	45	5.5	45	91	0	370	26	21	20	31	1.98
8821--8951	45	2.9	45	91	0	208	28	20	21	29	1.98
10596--10646	21	2.4	22	96	3	95	58	3	7	29	1.44
17725--17782	29	2.0	29	83	6	73	25	18	6	48	1.73
18023--18089	15	4.3	15	66	26	50	73	5	0	20	1.04
18006--18089	24	3.5	23	74	11	80	72	4	0	22	1.03
18009--18089	12	6.8	12	70	13	51	71	4	0	23	1.05
18000--18219	47	4.9	47	82	9	239	67	6	3	22	1.29
18000--18219	85	2.5	93	76	15	239	67	6	3	22	1.29
18057--18214	84	1.9	84	84	6	212	66	8	4	20	1.36
20868--20942	31	2.4	31	72	18	75	58	1	1	38	1.15
31475--31515	16	2.6	16	88	3	57	36	12	19	31	1.89
42761--42819	26	2.3	26	88	2	93	42	40	10	6	1.65
44193--44241	22	2.2	23	79	20	59	42	2	0	55	1.11
44206--44248	19	2.4	19	85	11	56	46	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45504--45566	22	2.9	22	95	2	110	41	36	3	19	1.67
46434--46509	35	2.1	36	87	2	109	31	0	23	44	1.54
53093--53162	21	3.3	21	64	15	54	22	20	21	35	1.96
53082--53164	42	2.0	42	92	0	139	24	20	22	32	1.98
53104--53171	21	3.4	19	67	15	55	26	22	20	30	1.98
54048--54201	21	7.4	21	68	17	106	32	24	21	21	1.98
54044--54219	42	4.2	42	91	4	293	31	25	21	21	1.98
54049--54211	83	2.0	84	93	3	285	31	25	21	21	1.98
54069--54219	21	7.2	21	61	20	57	31	27	20	21	1.98
55624--55662	2	19.5	2	100	0	78	51	0	0	48	1.00
55907--56138	113	2.1	113	86	4	317	9	26	6	57	1.55
56456--56508	3	17.3	3	83	11	63	67	3	0	28	1.07
56837--56898	23	2.7	22	80	5	61	45	1	1	51	1.20
58057--58094	18	2.1	18	95	0	67	10	18	13	57	1.63
58061--58100	18	2.2	18	86	0	53	17	17	12	52	1.74
61995--62036	3	13.3	3	85	9	57	33	0	4	61	1.17
61995--62036	13	3.3	13	84	15	61	33	0	4	61	1.17
61995--62036	16	2.7	15	82	10	57	33	0	4	61	1.17
64361--64416	29	1.9	29	92	0	94	35	12	23	28	1.91
66074--66145	29	2.6	29	80	12	87	30	1	8	59	1.35
67748--67803	15	3.8	15	88	2	78	23	26	25	25	2.00
67807--67844	13	2.8	13	88	4	58	18	18	18	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68837--68882	25	1.9	23	82	8	56	34	26	10	28	1.90
71826--71953	10	13.3	9	77	12	112	16	28	26	28	1.97
71846--71953	19	5.7	19	81	13	109	15	28	27	27	1.96
71826--71953	29	4.4	29	89	5	179	16	28	26	28	1.97
71948--72014	22	3.0	22	95	0	116	17	46	22	13	1.83
79123--79219	9	10.3	9	79	12	106	14	28	27	28	1.95
79122--79213	19	4.9	18	84	9	96	15	27	28	29	1.96
79123--79219	29	3.4	28	82	13	119	14	28	27	28	1.95
79215--79253	17	2.3	17	100	0	78	17	46	23	12	1.83
86403--86495	19	4.9	18	85	7	105	15	26	29	29	1.96
86404--86501	29	3.4	28	83	12	128	14	28	28	28	1.95
86404--86501	48	2.1	47	94	5	171	14	28	28	28	1.95
86412--86512	48	2.1	48	85	7	134	14	31	28	24	1.95
86497--86535	17	2.3	17	100	0	78	17	46	23	12	1.83
94111--94139	15	1.9	15	100	0	58	27	0	6	65	1.18
95391--95438	19	2.5	19	93	0	78	33	27	18	20	1.96
97509--97558	22	2.2	23	96	3	93	42	12	0	46	1.41
97518--97587	36	2.0	36	83	13	92	48	12	0	38	1.42
98755--98796	22	1.9	22	85	0	57	40	14	11	33	1.82
98795--98854	27	2.2	28	93	3	104	48	11	6	33	1.66
100109--100792	341	2.0	346	92	4	1154	40	8	7	42	1.64
101881--101939	3	19.7	3	87	0	82	0	69	3	27	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104020--104102	42	1.9	43	81	13	100	28	2	6	62	1.31
105156--105358	41	4.9	40	75	11	153	35	17	22	24	1.95
105191--105297	42	2.6	41	79	10	112	38	16	20	24	1.93
105439--105489	3	17.0	3	100	0	102	66	0	0	33	0.92

Tables:   1

The End!