Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008455.1 Hibiscus syriacus cultivar Beakdansim tig00111263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56297

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
198--494
99
3.0
95
74
11
242
40
8
12
39
1.72
212--509
97
3.1
94
79
7
296
40
8
11
39
1.71
1000--1231
81
3.0
81
80
10
254
40
14
7
37
1.75
12001--12078
20
4.0
20
78
6
97
25
24
26
23
2.00
12438--12493
2
28.0
2
100
0
112
50
0
0
50
1.00
18771--18856
21
4.2
21
79
7
88
34
17
16
31
1.92
18820--18862
20
2.2
20
95
0
77
39
16
18
25
1.91
18921--19025
40
2.6
40
81
3
113
33
22
11
32
1.90
18957--19050
20
4.8
20
78
12
97
30
22
10
36
1.88
19181--19219
16
2.5
15
84
8
51
28
5
0
66
1.12
19809--19858
24
2.1
24
92
0
82
22
18
18
42
1.90
21364--21504
64
2.2
65
81
1
158
26
19
24
29
1.98
21383--21542
65
2.5
65
84
1
196
26
16
25
30
1.97
21493--21539
19
2.5
19
83
10
62
25
17
31
25
1.97
23297--23332
18
2.0
18
94
0
63
55
25
2
16
1.55
23637--23711
20
3.8
20
81
0
87
48
22
16
13
1.80
23899--23959
20
3.0
20
80
0
77
45
22
18
13
1.83
25645--25759
21
5.5
21
78
6
117
22
20
35
21
1.96
25645--25767
42
2.9
42
87
2
185
23
19
35
21
1.96
26059--26180
63
1.9
63
83
3
156
31
32
12
22
1.91
27885--27940
19
2.9
19
86
5
78
51
19
16
12
1.75
28481--28522
19
2.2
19
86
0
57
40
19
21
19
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28516--28558
20
2.2
20
100
0
86
13
13
25
46
1.81
28555--28644
20
4.5
20
90
0
135
20
17
20
42
1.90
34682--34747
28
2.4
28
97
0
123
60
4
9
25
1.46
36043--36108
3
22.0
3
83
6
80
59
0
1
39
1.07
36043--36108
27
2.4
27
95
5
116
59
0
1
39
1.07
36348--36598
113
2.2
114
92
0
414
27
18
14
39
1.90
37032--37108
36
2.2
35
95
2
136
33
10
15
40
1.81
40287--40354
3
22.0
3
86
3
82
58
0
1
39
1.07
40595--40845
113
2.2
114
92
0
414
27
18
14
39
1.90
41276--41351
35
2.2
35
92
4
127
34
10
15
39
1.82
44578--44626
3
16.3
3
84
0
62
59
0
2
38
1.09
44577--44624
12
4.0
12
86
0
69
56
0
2
41
1.11
44867--45117
113
2.2
114
92
0
414
27
18
14
39
1.90
45550--45625
35
2.2
35
97
0
143
32
10
15
40
1.82
46047--46076
15
2.0
15
100
0
60
13
26
46
13
1.80
48859--48917
3
20.0
3
81
10
68
59
0
1
38
1.08
48861--48917
12
4.8
12
85
10
82
59
0
1
38
1.08
49157--49407
113
2.2
114
92
0
414
27
18
14
39
1.90
49841--49917
36
2.2
35
95
2
136
33
10
15
40
1.81
50338--50367
15
2.0
15
100
0
60
13
26
46
13
1.80
53133--53191
3
19.0
3
84
10
66
59
0
1
38
1.08
53133--53189
20
2.8
21
84
15
75
57
0
1
40
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53135--53191
23
2.4
24
83
16
75
59
0
1
38
1.08
53133--53190
22
2.5
24
84
15
79
58
0
1
39
1.08
53430--53677
113
2.2
114
90
2
387
27
18
14
39
1.90
54111--54186
36
2.1
36
97
0
143
31
10
14
43
1.79
54608--54637
15
2.0
15
100
0
60
13
26
46
13
1.80

Tables:   1

The End!