genome.fa.s8456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008456.1 Hibiscus syriacus cultivar Beakdansim tig00111269_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86408

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28804--28834	4	7.8	4	100	0	62	74	0	0	25	0.82
42612--42647	2	18.5	2	94	5	65	52	0	0	47	1.00
43059--43196	37	3.8	36	83	6	163	29	13	13	42	1.83
43093--43193	34	2.9	35	89	8	152	27	13	13	44	1.82
43742--44197	105	4.3	106	89	3	650	21	18	26	33	1.96
43742--44197	211	2.1	212	87	3	659	21	18	26	33	1.96
44889--45195	37	8.8	37	68	18	201	38	13	20	28	1.90
45091--45195	36	2.9	36	89	1	156	39	12	23	24	1.89
44889--45160	102	2.7	102	93	0	472	38	13	19	28	1.89
46056--46106	22	2.3	22	96	0	93	25	11	27	35	1.91
46720--46755	13	2.6	13	91	8	54	5	5	5	83	0.91
46717--46782	33	2.0	34	85	8	91	3	12	4	80	0.98
46750--46793	23	2.0	23	86	4	63	0	20	4	75	0.98
50132--50166	2	17.5	2	93	0	61	54	0	0	45	0.99
50581--50718	37	3.8	36	84	6	172	29	14	13	42	1.84
50615--50715	34	2.9	35	91	8	161	27	14	13	43	1.84
50873--51520	200	3.2	199	81	7	693	31	16	13	39	1.87
67490--67581	39	2.4	39	81	0	103	29	20	27	22	1.99
69129--69163	13	2.7	13	86	0	52	17	31	28	22	1.96
69621--69679	23	2.6	23	91	0	91	42	8	16	32	1.79
70820--70869	18	2.8	18	96	0	91	6	12	16	66	1.43
73287--73334	23	2.1	23	88	0	69	35	12	18	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73714--73784	22	3.1	23	83	6	81	40	19	5	33	1.75
73714--73763	23	2.2	24	89	7	77	46	18	2	34	1.60
73446--74310	428	2.0	426	97	1	1655	38	12	8	39	1.74
74152--74214	23	2.7	23	90	0	90	38	19	6	36	1.77
76760--77427	183	3.7	182	98	0	1264	34	15	14	35	1.89
78786--78835	3	17.0	3	81	4	57	24	34	4	38	1.74
78786--78847	12	5.2	12	88	1	72	22	33	6	37	1.80
78792--78850	18	3.3	18	87	0	82	20	33	6	38	1.79
78792--78850	6	9.8	6	83	0	55	20	33	6	38	1.79
80313--81318	197	5.1	197	95	2	1714	33	15	14	36	1.88
81384--81463	38	2.1	38	83	2	99	55	10	2	32	1.47
81400--81463	19	3.4	19	95	0	110	56	9	3	31	1.47
83243--83306	32	2.0	32	87	0	92	25	43	1	29	1.64
85581--85627	20	2.4	19	79	10	58	19	17	8	55	1.67
85742--85790	19	2.5	20	78	15	66	22	16	8	53	1.69

Tables:   1

The End!