genome.fa.s8457.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008457.1 Hibiscus syriacus cultivar Beakdansim tig00111270_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73366

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8812--8895	39	2.2	39	82	0	96	28	22	25	23	1.99
10437--10471	13	2.7	13	86	0	52	17	31	28	22	1.96
10925--10983	23	2.6	23	91	0	91	42	8	16	32	1.79
12119--12168	18	2.8	18	96	0	91	6	12	16	66	1.43
14574--14621	23	2.1	23	88	0	69	35	12	18	33	1.89
15009--15070	22	2.7	23	85	5	81	38	19	6	35	1.77
14733--15597	427	2.0	427	97	1	1657	38	12	8	39	1.74
15436--15498	23	2.7	23	90	0	90	38	19	6	36	1.77
18045--18709	183	3.7	184	96	2	1236	34	15	15	34	1.89
20064--20114	3	17.0	3	83	0	66	25	33	3	37	1.74
20064--20126	12	5.2	12	90	0	81	23	33	6	36	1.80
20068--20129	18	3.4	18	88	0	88	20	33	6	38	1.79
20068--20129	6	10.3	6	83	0	61	20	33	6	38	1.79
21585--22591	197	5.1	196	95	2	1744	33	15	14	36	1.88
22676--22733	19	3.1	19	97	0	107	53	10	3	32	1.52
24511--24576	33	2.0	33	87	0	96	24	45	1	28	1.62
26674--26725	24	2.2	23	83	10	61	26	7	13	51	1.67
28085--28126	22	1.9	22	85	9	59	50	4	19	26	1.67
28342--28671	77	4.3	77	74	7	233	39	9	17	33	1.81
34862--34970	52	2.1	53	92	3	184	41	15	23	19	1.90
51480--51524	19	2.4	19	81	7	56	37	0	0	62	0.96
51657--51713	27	2.1	28	86	3	80	43	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55104--55490	95	4.3	93	82	13	491	38	15	8	37	1.78
55236--55396	81	2.0	80	92	3	270	36	14	9	39	1.79
55418--55475	26	2.2	27	87	9	84	37	15	8	37	1.78
55132--55491	176	2.1	174	90	5	568	37	15	8	38	1.79
55315--55490	94	1.9	94	89	2	273	38	15	7	38	1.77
55835--55913	22	3.4	22	68	27	63	31	6	13	48	1.68
55827--55923	49	2.0	49	93	0	167	34	6	13	46	1.68
58531--58556	2	13.0	2	100	0	52	50	0	0	50	1.00
62878--62911	2	17.5	2	93	6	61	50	0	0	50	1.00
63047--63079	11	3.0	11	83	16	50	63	0	0	36	0.95
63340--63373	3	11.3	3	100	0	68	32	0	0	67	0.91
63904--63948	22	2.0	22	82	8	54	71	2	24	2	1.09
64464--64510	20	2.4	19	80	16	51	25	2	14	57	1.49
66931--66992	32	2.0	32	96	3	117	14	14	9	61	1.57
68396--68475	26	3.3	25	70	19	80	25	25	10	40	1.86
69098--69138	14	3.0	14	79	17	50	75	4	19	0	0.98
69092--69137	24	2.0	23	87	12	67	78	4	17	0	0.91
70317--70348	4	8.0	4	100	0	64	50	25	0	25	1.50
70981--71065	36	2.4	36	84	4	109	30	21	11	36	1.89
71343--71448	31	3.7	29	82	9	137	32	8	16	43	1.77
71408--71460	27	1.9	27	88	3	79	28	7	15	49	1.71
71459--71560	52	2.0	52	86	7	145	32	13	18	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71546--71626	30	2.8	29	87	12	114	34	11	14	39	1.82
72370--72524	31	5.0	31	86	3	206	36	21	20	21	1.95
72370--72522	61	2.5	62	89	5	231	36	21	20	21	1.95
72698--72743	22	2.0	22	87	8	65	34	21	0	43	1.53
73270--73313	20	2.1	21	87	4	63	15	22	29	31	1.95

Tables:   1

The End!