genome.fa.s8458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008458.1 Hibiscus syriacus cultivar Beakdansim tig00111271_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111851

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4948--5000	21	2.6	21	81	3	63	26	22	16	33	1.96
27154--27189	11	3.3	11	96	0	63	38	13	36	11	1.81
28577--28619	23	1.9	21	81	13	50	32	18	13	34	1.90
30490--30547	22	2.7	22	86	2	91	20	22	20	36	1.95
43184--43245	31	2.0	31	93	0	106	37	9	6	46	1.62
47301--47419	32	3.8	32	78	5	120	19	28	23	28	1.98
48011--48048	19	2.0	20	84	5	51	28	2	5	63	1.30
52916--52944	13	2.1	14	93	6	51	55	0	3	41	1.17
53466--53537	23	3.0	24	76	11	69	45	1	4	48	1.30
53719--53773	24	2.2	24	81	15	60	47	0	3	49	1.19
53759--53807	25	2.0	24	84	11	64	53	0	2	44	1.12
54944--54985	17	2.5	17	96	0	75	19	23	14	42	1.87
66829--66879	19	2.7	18	82	8	57	33	1	3	60	1.26
67778--67839	3	19.3	3	84	15	72	32	0	0	67	0.91
67777--67837	10	6.2	10	88	11	99	31	0	0	68	0.89
67778--67839	19	3.2	19	93	6	99	32	0	0	67	0.91
67781--67847	16	4.4	15	83	14	84	31	0	1	67	1.00
67778--67851	19	4.2	17	85	13	80	32	0	1	66	1.00
70973--71011	18	2.1	19	90	9	62	69	0	5	25	1.09
70961--71014	18	3.0	18	75	24	60	68	0	7	24	1.15
72187--72218	3	10.7	3	100	0	64	65	0	0	34	0.93
72213--72239	9	3.0	9	100	0	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72187--72239	18	2.9	18	88	0	70	54	0	0	45	0.99
72637--72686	16	2.9	17	75	24	52	16	18	18	48	1.82
72666--72974	136	2.3	136	92	0	510	26	21	17	34	1.96
73853--73913	12	5.3	11	81	15	70	8	11	0	80	0.91
73865--73904	21	1.9	21	89	0	62	7	7	0	85	0.76
85286--85341	2	29.5	2	89	10	91	51	0	0	48	1.00
86437--86475	18	2.1	19	90	9	62	69	0	5	25	1.09
86425--86478	18	3.0	18	75	24	60	68	0	7	24	1.15
88434--88650	20	10.2	20	72	14	132	41	23	19	15	1.90
88434--88619	62	2.9	62	80	9	182	40	24	20	14	1.90
88537--88633	49	1.9	50	93	4	169	37	26	20	15	1.93
88515--88647	69	1.9	68	89	8	207	39	24	21	15	1.91
88758--88808	6	8.5	6	100	0	102	33	50	15	0	1.44
89312--89435	6	20.8	6	98	1	241	0	16	50	33	1.45
89539--89805	20	13.1	20	84	13	291	17	19	26	36	1.93
89539--89879	40	8.4	39	81	9	323	16	19	26	38	1.92
89531--89798	102	2.6	101	94	2	450	16	19	26	38	1.92
89747--89817	20	3.5	20	71	24	67	19	16	28	35	1.94
89829--89880	19	2.7	19	84	3	59	11	19	26	42	1.85
90537--90587	25	2.0	25	82	14	61	54	0	3	41	1.19
95632--95730	19	5.1	19	67	13	58	58	4	4	33	1.35
102500--102542	11	3.7	11	81	6	50	72	2	11	13	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106774--106807	13	2.7	12	86	13	50	0	2	8	88	0.62
107743--107784	19	2.2	19	95	0	75	40	19	7	33	1.78
111798--111835	20	1.9	19	85	15	51	39	5	13	42	1.66

Tables:   1

The End!