Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008461.1 Hibiscus syriacus cultivar Beakdansim tig00111274_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100279

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2999--3073
35
2.1
36
97
2
143
22
18
13
45
1.84
5616--5662
11
4.4
11
87
10
62
0
10
12
76
1.02
14901--15018
35
3.4
35
78
2
103
33
16
22
26
1.96
16172--16262
24
3.4
26
80
11
96
43
1
1
53
1.15
16241--16290
16
2.9
16
78
18
55
42
2
0
56
1.11
16910--16969
31
1.9
31
86
6
86
43
10
5
41
1.60
17861--17912
25
2.2
25
82
6
63
57
23
7
11
1.59
18425--18458
16
2.2
15
89
5
50
2
2
8
85
0.80
18405--18464
26
2.3
26
77
13
70
10
5
5
80
1.02
18480--18541
6
10.8
6
79
10
60
16
0
3
80
0.83
18482--18532
7
7.4
7
82
8
61
13
0
3
82
0.81
18482--18541
22
2.7
22
73
21
63
15
0
3
81
0.81
18421--18695
114
2.5
113
82
9
300
12
6
7
73
1.23
18594--18651
5
11.8
5
79
17
52
18
0
5
75
0.98
18701--18753
5
10.8
5
76
11
56
15
5
1
77
1.04
18701--18753
9
5.4
10
84
6
56
15
5
1
77
1.04
18728--18794
33
2.1
31
86
5
89
13
2
8
74
1.17
18734--18804
33
2.2
32
82
7
81
15
2
11
70
1.27
18889--18929
4
10.0
4
84
5
55
21
0
2
75
0.92
19719--19759
2
20.5
2
100
0
82
51
0
0
48
1.00
20501--20540
18
2.2
19
86
4
55
42
7
2
47
1.45
21335--21366
2
16.0
2
100
0
64
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21366--21390
2
12.5
2
100
0
50
48
0
0
52
1.00
22941--22969
2
14.5
2
100
0
58
48
0
0
51
1.00
23837--23874
20
1.9
20
100
0
76
18
21
31
28
1.97
33253--33409
77
2.0
78
96
1
289
31
14
7
47
1.71
34248--34280
2
16.5
2
100
0
66
51
0
0
48
1.00
34471--34504
2
17.0
2
100
0
68
50
0
0
50
1.00
44058--44138
36
2.2
37
82
2
101
41
35
9
12
1.76
44246--44274
2
14.5
2
100
0
58
51
0
0
48
1.00
44422--44447
5
5.2
5
100
0
52
23
57
19
0
1.40
47663--47747
29
2.9
29
82
0
98
23
21
14
41
1.89
50951--50997
17
2.8
17
84
12
62
29
0
2
68
1.02
58435--58514
39
2.1
39
87
0
115
37
13
23
25
1.92
70712--70741
2
15.0
2
100
0
60
50
0
0
50
1.00
81440--81488
19
2.5
20
90
3
73
38
12
20
28
1.89
82765--82806
14
3.2
13
78
15
50
45
0
0
54
0.99
83293--83326
15
2.4
14
95
5
59
41
0
0
58
0.98
83523--83549
4
6.8
4
100
0
54
74
0
0
25
0.83
92694--92740
24
2.0
24
82
0
58
44
2
0
53
1.12
92817--92872
29
1.9
29
85
0
76
51
12
8
26
1.69
94546--94582
19
1.9
19
94
0
65
32
29
16
21
1.95
94647--94673
12
2.2
12
100
0
54
37
22
22
18
1.95
94700--94836
21
6.6
21
75
12
140
37
24
15
22
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94700--94871
62
2.8
62
87
4
233
34
24
16
24
1.95
94762--94856
41
2.3
41
90
0
154
34
25
15
24
1.95
94680--94871
20
9.4
20
74
12
124
34
24
16
24
1.95

Tables:   1

The End!