genome.fa.s8467.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008467.1 Hibiscus syriacus cultivar Beakdansim tig00111281_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88319

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2162--2200	15	2.5	15	83	4	51	66	0	2	30	1.05
2162--2200	16	2.5	15	84	8	51	66	0	2	30	1.05
2369--2510	41	3.5	40	71	11	110	31	14	25	28	1.94
2421--2474	21	2.7	20	94	5	99	40	16	22	20	1.91
2669--2895	7	32.1	7	73	18	136	37	1	5	55	1.34
2669--2845	12	14.7	12	72	22	106	40	2	5	51	1.38
2676--2838	5	34.2	5	68	19	73	40	2	4	52	1.36
2700--2875	52	3.2	52	77	15	153	37	1	5	55	1.34
5325--5357	17	1.9	17	88	11	50	9	6	3	81	0.95
10895--10926	14	2.2	15	94	5	57	62	12	6	18	1.50
13753--13798	24	1.9	24	82	8	58	19	36	4	39	1.72
18429--19557	571	2.0	563	92	2	1890	38	16	17	28	1.91
19561--19596	15	2.4	15	95	0	63	19	5	30	44	1.73
20100--20149	23	2.2	23	100	0	100	18	40	0	42	1.50
20888--20936	16	3.1	16	77	13	57	61	2	0	36	1.08
21079--21127	2	24.5	2	100	0	98	48	0	0	51	1.00
22183--22293	44	2.6	45	73	11	108	38	16	2	42	1.62
24771--24875	3	35.0	3	86	7	151	36	0	0	62	1.02
24770--24888	18	6.3	18	73	11	55	39	0	0	59	1.03
26917--26956	17	2.3	17	86	4	53	22	0	0	77	0.77
31267--31339	2	37.0	2	97	2	139	50	0	0	49	1.00
33584--33921	114	2.9	115	95	0	579	32	13	21	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35910--36075	52	3.2	52	89	3	251	39	15	19	24	1.91
36270--36324	22	2.5	22	90	0	92	34	12	14	38	1.84
36723--37387	112	6.0	113	85	7	831	38	13	18	29	1.89
37790--38270	76	6.4	75	94	3	846	21	20	21	35	1.96
38402--38520	3	39.0	3	88	3	175	36	0	1	62	1.06
45496--45958	112	4.1	112	92	0	737	45	12	14	26	1.81
45829--46281	182	2.5	182	91	0	728	43	13	15	27	1.84
46705--46752	23	2.1	23	88	0	69	37	16	8	37	1.79
47491--47585	22	4.2	22	69	21	63	61	1	2	35	1.15
47501--47593	13	6.7	15	72	19	62	60	1	2	36	1.16
50884--51036	65	2.4	65	85	3	193	31	20	20	27	1.98
51357--51404	21	2.3	21	100	0	96	37	4	10	47	1.57
53656--53729	23	3.3	22	77	7	69	25	20	25	28	1.99
53654--53754	44	2.3	43	83	5	123	24	20	24	29	1.99
54495--54523	14	2.1	14	100	0	58	27	13	31	27	1.94
57604--57824	116	1.9	117	83	4	286	28	13	8	49	1.71
59137--59292	65	2.4	65	86	5	201	30	19	22	27	1.98
69692--69933	43	5.6	43	76	7	143	29	19	21	29	1.98
70271--70400	21	6.2	21	84	1	100	2	38	19	40	1.64
70302--70382	42	1.9	42	87	0	117	3	38	22	35	1.72
78312--78351	21	1.9	21	100	0	80	37	15	15	32	1.88
79064--79290	83	2.7	83	81	0	247	24	21	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79255--79349	41	2.3	43	80	10	108	30	24	15	29	1.96
79088--79290	83	2.4	83	83	0	262	25	22	19	33	1.97
81251--81295	23	2.0	23	82	8	56	51	0	4	44	1.21
86656--86685	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!