Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008472.1 Hibiscus syriacus cultivar Beakdansim tig00111298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 548252
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 1 of 2
Found at i:4271 original size:15 final size:15
Alignment explanation
Indices: 4248--4279 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4238 TGAAATGAAT
4248 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
4263 AATGCATGTATGCAA
1 AATGAATGTATGCAA
4278 AA
1 AA
4280 AAGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:9733 original size:3 final size:3
Alignment explanation
Indices: 9703--9782 Score: 79
Period size: 3 Copynumber: 26.0 Consensus size: 3
9693 TTTGAGTTTT
* * * *
9703 ATA ATA TTA ATAA ATA ATA TATA TTA ATA ATA ATA ATA ATT ATA ATT
1 ATA ATA ATA AT-A ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
9750 ATA ATT ATA ATA ATA ATT ATA ATT ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9783 TAAATAACAT
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
3 55 0.90
4 6 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
ATA
Found at i:13554 original size:11 final size:11
Alignment explanation
Indices: 13511--13602 Score: 82
Period size: 11 Copynumber: 8.2 Consensus size: 11
13501 TTTTATTTAG
13511 TTATT-TTATT
1 TTATTATTATT
*
13521 TCATTATTTATT
1 TTATTA-TTATT
*
13533 TGTAATATTATT
1 T-TATTATTATT
13545 TTATTATTATT
1 TTATTATTATT
*
13556 TT-TAATATATT
1 TTATTAT-TATT
13567 TTAATTA-TACTT
1 TT-ATTATTA-TT
*
13579 TAATTATTATT
1 TTATTATTATT
13590 TTATTATTATT
1 TTATTATTATT
13601 TT
1 TT
13603 TATCTTAGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
10 7 0.11
11 37 0.56
12 17 0.26
13 5 0.08
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.67
Consensus pattern (11 bp):
TTATTATTATT
Found at i:13561 original size:23 final size:23
Alignment explanation
Indices: 13516--13604 Score: 103
Period size: 23 Copynumber: 3.9 Consensus size: 23
13506 TTTAGTTATT
* *
13516 TTATTTCATTATTTATTTGTAATA
1 TTATTTTATTA-TTATTTTTAATA
13540 TTATTTTATTATTATTTTTAATA
1 TTATTTTATTATTATTTTTAATA
*
13563 -TATTTTA--ATTATACTTTAATTA
1 TTATTTTATTATTAT-TTTTAA-TA
13585 TTATTTTATTATTATTTTTA
1 TTATTTTATTATTATTTTTA
13605 TCTTAGTCTT
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
20 5 0.09
21 5 0.09
22 9 0.16
23 18 0.32
24 14 0.25
25 5 0.09
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.66
Consensus pattern (23 bp):
TTATTTTATTATTATTTTTAATA
Found at i:13566 original size:14 final size:12
Alignment explanation
Indices: 13528--13620 Score: 51
Period size: 11 Copynumber: 8.1 Consensus size: 12
13518 ATTTCATTAT
13528 TTATTTGTA-ATA
1 TTATTT-TATATA
13540 TTATTTTAT-TA
1 TTATTTTATATA
13551 TTATTTT-TA-A
1 TTATTTTATATA
13561 TATATTTTA-AT-
1 T-TATTTTATATA
*
13572 TATACTTTA-ATTA
1 T-TATTTTATA-TA
13585 TTATTTTAT-TA
1 TTATTTTATATA
*
13596 TTATTTT-TATC
1 TTATTTTATATA
*
13607 TTAGTCTTATATA
1 TTA-TTTTATATA
13620 T
1 T
13621 ATGTATATAT
Statistics
Matches: 65, Mismatches: 5, Indels: 21
0.71 0.05 0.23
Matches are distributed among these distances:
10 4 0.06
11 40 0.62
12 16 0.25
13 5 0.08
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (12 bp):
TTATTTTATATA
Found at i:13601 original size:34 final size:33
Alignment explanation
Indices: 13495--13602 Score: 94
Period size: 34 Copynumber: 3.1 Consensus size: 33
13485 TATATTGTAG
* * *
13495 TTTTAATTTTATTTAGTTATTTTATTTCATTATTTA
1 TTTTAATATTATTTAATTA--TTATTTTATTA-TTA
* *
13531 TTTGTAATATTATTTTATTATTATTTT-TAATATA
1 TTT-TAATATTATTTAATTATTATTTTATTAT-TA
13565 TTTTAAT-TATACTTTAATTATTATTTTATTATTA
1 TTTTAATAT-TA-TTTAATTATTATTTTATTATTA
13599 TTTT
1 TTTT
13603 TATCTTAGTC
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
32 1 0.02
33 7 0.12
34 27 0.45
35 9 0.15
36 3 0.05
37 13 0.22
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (33 bp):
TTTTAATATTATTTAATTATTATTTTATTATTA
Found at i:13775 original size:86 final size:87
Alignment explanation
Indices: 13659--13827 Score: 218
Period size: 86 Copynumber: 2.0 Consensus size: 87
13649 ATATGTATTT
* * *
13659 ATTTTTAATATCAAAGAAAAGGGTAGTCTTAAAGTAACTAGATGCCCTATTCTGGTATT-TTAAA
1 ATTTTTAATATCAAAGAAAAGGGTAGTCTTAAAGCAACTAGAAGCCCTATTCTGATATTCTTAAA
*
13723 TAAATAAATTTCTTACTTATAA
66 TAAATAAATATCTTACTTATAA
* * * * *
13745 ATTTCTTAATAT-TAAGAAATGGGCT-GTCTTAAAGCACCTAGAAGTCCTTTTCTGATATTCTTA
1 ATTT-TTAATATCAAAGAAAAGGG-TAGTCTTAAAGCAACTAGAAGCCCTATTCTGATATTCTTA
13808 AATAAATAAATATCTTACTT
64 AATAAATAAATATCTTACTT
13828 TTATAATTAT
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
86 41 0.58
87 30 0.42
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39
Consensus pattern (87 bp):
ATTTTTAATATCAAAGAAAAGGGTAGTCTTAAAGCAACTAGAAGCCCTATTCTGATATTCTTAAA
TAAATAAATATCTTACTTATAA
Found at i:21953 original size:114 final size:114
Alignment explanation
Indices: 21685--22025 Score: 585
Period size: 114 Copynumber: 3.0 Consensus size: 114
21675 AAGTGCCATG
21685 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCT-AGAAGTGTTCTTTGAGTTATCTGAT
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGA-AAGTGTTCTTTGAGTTATCTGAT
21749 CTGGTTTGGTATGAACCCCAAAAACCAATCATTGGATTTGAAAGATGAATT
65 CTGGTTTGGTATGAACCCC-AAAACCAATCATTGGATTTGAAAGATGAATT
21800 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGAAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGAAAGTGTTCTTTGAGTTATCTGATC
*
21865 TGATTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATT
66 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATT
* *
21914 TGCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGAAAGTGTTCTTTGAGTTATCTGATC
* * * * *
21979 TGGTTCGGTAGGAACCCCAGAACCAATCATTGGAATTAAAAGATGAA
66 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAA
22026 CTGCATGATC
Statistics
Matches: 216, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
114 135 0.62
115 80 0.37
116 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (114 bp):
TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGAAAGTGTTCTTTGAGTTATCTGATC
TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATT
Found at i:24171 original size:54 final size:54
Alignment explanation
Indices: 24089--24254 Score: 269
Period size: 54 Copynumber: 3.1 Consensus size: 54
24079 CAATGATTGA
24089 GAACATCTGAGCAGAAACCACAGGAAATGATGAATGTGTTGTCAAATGTTTTAC
1 GAACATCTGAGCAGAAACCACAGGAAATGATGAATGTGTTGTCAAATGTTTTAC
*
24143 GAACATCTGAGCAGAAACTACAGGAAATGATGAATGTGTTGTCAAATGTTTTAC
1 GAACATCTGAGCAGAAACCACAGGAAATGATGAATGTGTTGTCAAATGTTTTAC
* * * ** *
24197 GAACATCTGAGCAGAAGCCACAGGAAAGGATGAATGCGCCGTCAAATGTTTTAA
1 GAACATCTGAGCAGAAACCACAGGAAATGATGAATGTGTTGTCAAATGTTTTAC
24251 GAAC
1 GAAC
24255 CTGCTATTCT
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 104 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (54 bp):
GAACATCTGAGCAGAAACCACAGGAAATGATGAATGTGTTGTCAAATGTTTTAC
Found at i:24638 original size:22 final size:22
Alignment explanation
Indices: 24612--24690 Score: 113
Period size: 22 Copynumber: 3.6 Consensus size: 22
24602 ACATCTACAT
24612 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
24634 TCTTCAAAGATGATAGATTCCC
1 TCTTCAAAGATGATAGATTCTC
* * *
24656 TTTTTAAAGATGACAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
24678 TTTTCAAAGATGA
1 TCTTCAAAGATGA
24691 AAGCTTTATC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTCTC
Found at i:25313 original size:113 final size:113
Alignment explanation
Indices: 25092--25523 Score: 683
Period size: 113 Copynumber: 3.8 Consensus size: 113
25082 GATTAAAATC
* * ****
25092 CATCATTCAATGGATCAACATTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCT---G-AGGA
1 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
25153 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
*
25201 CATCATTCGATGGATCAACTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
25266 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
25314 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
25379 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
* **
25427 CATCATAAGGTAGATCAACATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA
1 CATCAT----TCGAT--GGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA
25492 GAAGGAAGAAGAAGTTCATAATGAGAAGAACT
60 GAAGGAAGAAGAAGTTCATAATGAGAAGAACT
25524 CATCTGAAGA
Statistics
Matches: 302, Mismatches: 11, Indels: 10
0.93 0.03 0.03
Matches are distributed among these distances:
109 50 0.17
112 1 0.00
113 169 0.56
117 4 0.01
119 78 0.26
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (113 bp):
CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
Found at i:25508 original size:40 final size:40
Alignment explanation
Indices: 25463--25560 Score: 196
Period size: 40 Copynumber: 2.5 Consensus size: 40
25453 TTTCCAGAGA
25463 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
25503 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
25543 AAGTTCATAATGAGAAGA
1 AAGTTCATAATGAGAAGA
25561 GCTTGTTCAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.48, C:0.09, G:0.24, T:0.18
Consensus pattern (40 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
Found at i:25510 original size:232 final size:222
Alignment explanation
Indices: 25092--25523 Score: 675
Period size: 232 Copynumber: 1.9 Consensus size: 222
25082 GATTAAAATC
****
25092 CATCATTCAATGGATCAACATTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAGGAAGAA
1 CATCATTCAATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAGGAAGAA
* **
25157 GAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATGGATCAACTT
66 GAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTAGATACATCAACTT
25222 TTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
131 TTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
25287 GAACTTGTTCAACTTTTCGCTTGAATT
196 GAACTTGTTCAACTTTTCGCTTGAATT
* *
25314 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCAATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT---G-AGGA
*
25379 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATCATAAGGTAGATCA
62 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCAT----TAGAT--
*
25444 ACATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTC
121 ACATCAACTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTC
25509 ATAATGAGAAGAACT
186 ATAATGAGAAGAACT
25524 CATCTGAAGA
Statistics
Matches: 189, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
222 50 0.26
225 1 0.01
226 57 0.30
230 4 0.02
232 77 0.41
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (222 bp):
CATCATTCAATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAGGAAGAA
GAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTAGATACATCAACTT
TTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
GAACTTGTTCAACTTTTCGCTTGAATT
Found at i:25524 original size:159 final size:162
Alignment explanation
Indices: 25344--25663 Score: 479
Period size: 159 Copynumber: 2.0 Consensus size: 162
25334 TTTCCAGAGA
25344 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * *
25409 CAACTTTTTGCTTGAATTC-AT-CATAA-G-G-TAGATCAACATCAACTTTTCCAGAGAAAGTTC
66 CAAC-CTTTGCTTG-ATTCTATACAGAATGAGATAGATCAACATCAACATTTCCAGAAAAAGTTC
*
25469 ATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
129 ATAATAAGAAGAACTCATCTGAAGAAGGAAGAAG
*
25503 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
* ** * *
25568 CAACCTTTGTTTGATTCTATCACAGAATGAGATAGATCAGTATCAGCATTTCCATAAAAAGTTCA
66 CAACCTTTGCTTGATTCTAT-ACAGAATGAGATAGATCAACATCAACATTTCCAGAAAAAGTTCA
25633 TAATAAGAAGAACTCATCTGAAGAAGGAAGA
130 TAATAAGAAGAACTCATCTGAAGAAGGAAGA
25664 GAATTTGTTC
Statistics
Matches: 144, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
157 4 0.03
158 9 0.06
159 68 0.47
160 4 0.03
161 1 0.01
162 1 0.01
163 57 0.40
ACGTcount: A:0.42, C:0.13, G:0.20, T:0.25
Consensus pattern (162 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
CAACCTTTGCTTGATTCTATACAGAATGAGATAGATCAACATCAACATTTCCAGAAAAAGTTCAT
AATAAGAAGAACTCATCTGAAGAAGGAAGAAG
Found at i:25862 original size:103 final size:101
Alignment explanation
Indices: 25562--25867 Score: 334
Period size: 102 Copynumber: 3.0 Consensus size: 101
25552 ATGAGAAGAG
* * * *
25562 CTTGTTCAACC-TTTGTTTGATTCTATCACAGAATGAGATAGATCAGTATCAGCATTTCCATAAA
1 CTTGTTCAACCTTTTGCTTGATTCTATCACAGAA-G-G-TAGATCA-AATCAAC-TTTCCAGAAA
25626 AAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAGAA
61 AAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAGAA
* * * * *** **
25667 TTTGTTCAACTTTTTGCTAGATTAC-ATCACAGAA-GAAGAT-AAATTGTCATCCCCAGCGAAAA
1 CTTGTTCAACCTTTTGCTTGATT-CTATCACAGAAGGTAGATCAAATCAAC-TTTCCA--GAAAA
*
25729 AGTTCATAATAAGAAGAACTCATCTGAAGAAGGAGGAGAA
62 AGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAGAA
*
25769 CTTGTTCAACCTTTTGCTTGATTCTATCACATAAGGTAGATCAACATCAACTTTGCCAGAAAAAG
1 CTTGTTCAACCTTTTGCTTGATTCTATCACAGAAGGTAGATCAA-ATCAACTTT-CCAGAAAAAG
*
25834 TTCATAATGAGAAGAACTCATCTGAAGAA-GAAGA
64 TTCATAATAAGAAGAACTCATCTGAAGAAGGAAGA
25868 AGTTCGTAAT
Statistics
Matches: 167, Mismatches: 25, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
100 8 0.05
101 2 0.01
102 79 0.47
103 41 0.25
104 3 0.02
105 15 0.09
106 18 0.11
107 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.27
Consensus pattern (101 bp):
CTTGTTCAACCTTTTGCTTGATTCTATCACAGAAGGTAGATCAAATCAACTTTCCAGAAAAAGTT
CATAATAAGAAGAACTCATCTGAAGAAGGAAGAGAA
Found at i:27596 original size:23 final size:23
Alignment explanation
Indices: 27551--27640 Score: 112
Period size: 23 Copynumber: 3.9 Consensus size: 23
27541 TTTAGTTATT
* *
27551 TTATTTCATTATTTATTTGTAATA
1 TTATTTTATTA-TTATTTTTAATA
27575 TTATTTTATTATTATTTTTAATA
1 TTATTTTATTATTATTTTTAATA
*
27598 -TATTTTAATTATTA-CTTTAATTA
1 TTATTTT-ATTATTATTTTTAA-TA
27621 TTATTTTATTATTATTTTTA
1 TTATTTTATTATTATTTTTA
27641 TCTTAGTCTT
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
22 11 0.19
23 27 0.47
24 20 0.34
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (23 bp):
TTATTTTATTATTATTTTTAATA
Found at i:27601 original size:14 final size:12
Alignment explanation
Indices: 27563--27674 Score: 62
Period size: 12 Copynumber: 9.5 Consensus size: 12
27553 ATTTCATTAT
27563 TTATTTGTA-ATA
1 TTATTT-TATATA
27575 TTATTTTAT-TA
1 TTATTTTATATA
27586 TTATTTT-TA-A
1 TTATTTTATATA
27596 TATATTTTA-ATTA
1 T-TATTTTATA-TA
*
27609 TTACTTTA-ATTA
1 TTATTTTATA-TA
27621 TTATTTTAT-TA
1 TTATTTTATATA
*
27632 TTATTTT-TATC
1 TTATTTTATATA
*
27643 TTAGTCTTATATA
1 TTA-TTTTATATA
*
27656 -TATGTATATATA
1 TTAT-TTTATATA
27668 TATATTT
1 T-TATTT
27675 GTTTAAATAA
Statistics
Matches: 79, Mismatches: 8, Indels: 25
0.71 0.07 0.22
Matches are distributed among these distances:
10 4 0.05
11 32 0.41
12 34 0.43
13 6 0.08
14 3 0.04
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (12 bp):
TTATTTTATATA
Found at i:27639 original size:12 final size:12
Alignment explanation
Indices: 27546--27641 Score: 85
Period size: 12 Copynumber: 8.3 Consensus size: 12
27536 TTTTATTTAG
27546 TTATT-TTA-TT
1 TTATTATTATTT
*
27556 TCATTATTTATTT
1 TTATTA-TTATTT
* *
27569 GTAATATTA-TT
1 TTATTATTATTT
27580 TTATTATTATTT
1 TTATTATTATTT
*
27592 TTAATA-TATTT
1 TTATTATTATTT
* *
27603 TAATTATTACTT
1 TTATTATTATTT
*
27615 TAATTATTA-TT
1 TTATTATTATTT
27626 TTATTATTATTT
1 TTATTATTATTT
27638 TTAT
1 TTAT
27642 CTTAGTCTTA
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
10 4 0.06
11 28 0.41
12 32 0.46
13 5 0.07
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (12 bp):
TTATTATTATTT
Found at i:27942 original size:21 final size:19
Alignment explanation
Indices: 27918--27965 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
27908 ATATTCTTAA
27918 ATAAATAAATATCTTACTTTT
1 ATAAATAAATATC-TA-TTTT
*
27939 ATAAAT-TATATCTATTTT
1 ATAAATAAATATCTATTTT
27957 -TAAATAAAT
1 ATAAATAAAT
27966 GTTTTAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 5 0.21
18 6 0.25
19 2 0.08
20 5 0.21
21 6 0.25
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (19 bp):
ATAAATAAATATCTATTTT
Found at i:29753 original size:99 final size:98
Alignment explanation
Indices: 29621--30362 Score: 514
Period size: 99 Copynumber: 7.4 Consensus size: 98
29611 ACACCGATGC
* * **
29621 TCAAATCACGGTCAGCTTGACTTGCAAATGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGAT
1 TCAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGAT
* * *
29686 GGTAGAATAGGTTTCTCGGGAAATACCTTAACGT
66 GGCA-AATAGGTTTCTCAGGAAATACCTCAACGT
* * **
29720 TCAAATCACGATCAACTTGATTTGGATGTGTTGGTGGCGGAT-TTAGTCCACC--GCCACCAATA
1 TCAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATACAAGT-CACCGTGCC-CC---A
* ** * * * *
29782 TTAGAAGGCAAATCA-AATTCGTCAAGAAGTGCCTCAACAT
61 -TAGATGGCAAAT-AGGTTTC-TCAGGAAATACCTCAACGT
* ** * * * * *
29822 CCATGTCACGATTAGCTTGACTTGCATGAGTTGGTGGCGGATACAAATCACCGTGCCGCATAGAT
1 TCAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGAT
29887 GGCAGAATAGGTTTCTCAGGAAATACCTCAACGT
66 GGCA-AATAGGTTTCTCAGGAAATACCTCAACGT
* * * ** *
29921 TCAAATCAGGATCAACTTGATTTGGATGTGTTGGTGGCGGAT-TTAGT--CCGCCGCCACCAATA
1 TCAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCG-TGCC-CC---A
* ** * * * * *
29983 TTAGAAGGCAAATCAAATTCCTCAAGAAGTGCCTCAACAT
61 -TAGATGGCAAAT-AGGTTTCTCAGGAAATACCTCAACGT
* ** * * **
30023 CCATGTCACGATTAGCTTGACTTGCAACTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGAT
1 TCAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGAT
* *
30088 GGCAGAATAGATTTCTCGGGAAATACCTCAACGT
66 GGCA-AATAGGTTTCTCAGGAAATACCTCAACGT
* ** * ** *
30122 TCAAATCACGATCAACTTGATTTGGGTGTGTTGGTGGTGGAT-TTAGT--CCGCCGCCACCAATA
1 TCAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCG-TGCC-CC---A
* * * * * ** *
30184 TTAGAAGGCAAATCAAGTTCCTCAAGAAGTGTCTCAACAT
61 -TAGATGGCAAAT-AGGTTTCTCAGGAAATACCTCAACGT
* ** * *
30224 CCATGTCACGATTAGCTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGAT
1 TCAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGAT
* *
30289 GGCAAAATAGGTTTCTCGGGAAATACCTTAACGT
66 GGC-AAATAGGTTTCTCAGGAAATACCTCAACGT
* * *
30323 TCAAATCACGATCAACTAGATTTGGATGTGTTGGTGGCGG
1 TCAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGG
30363 GTTTAGTCCG
Statistics
Matches: 474, Mismatches: 134, Indels: 70
0.70 0.20 0.10
Matches are distributed among these distances:
96 6 0.01
97 9 0.02
98 13 0.03
99 211 0.45
100 16 0.03
101 15 0.03
102 176 0.37
103 13 0.03
104 9 0.02
105 6 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (98 bp):
TCAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGAT
GGCAAATAGGTTTCTCAGGAAATACCTCAACGT
Found at i:29857 original size:102 final size:101
Alignment explanation
Indices: 29721--30587 Score: 627
Period size: 102 Copynumber: 8.6 Consensus size: 101
29711 CCTTAACGTT
* *
29721 CAAATCACGATCAACTTGATTTGGATGTGTTGGTGGCGGATTTAGTCCACCGCCACCAATATTAG
1 CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATTTAGTCCACCGCCACCAATATTAG
* *
29786 AAGGCAAATCAAATTCGTCAAGAAGTGCCTCAACATC
66 AAGGCAAAT-AAATTCCTCAAGAAATGCCTCAACATC
** * * * ** * ** **
29823 CATGTCACGATTAGCTTGACTTGCATGAGTTGGTGGCGGATACAAAT-CACCG-TGCC-GCA-TA
1 CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGAT-TTAGTCCACCGCCACCAATATTA
* ** * * * * *
29884 GATGGCAGAATAGGTTTCTCAGGAAATACCTCAACGTT
65 GAAGGCA-AATAAATTCCTCAAGAAATGCCTCAACATC
* * * *
29922 CAAATCAGGATCAACTTGATTTGGATGTGTTGGTGGCGGATTTAGTCCGCCGCCACCAATATTAG
1 CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATTTAGTCCACCGCCACCAATATTAG
*
29987 AAGGCAAATCAAATTCCTCAAGAAGTGCCTCAACATC
66 AAGGCAAAT-AAATTCCTCAAGAAATGCCTCAACATC
** * * ** **
30024 CATGTCACGATTAGCTTGACTTGCAACTGTTGGTGGCGGATACAAGT-CACCGTGCC-CC---A-
1 CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGAT-TTAGTCCACC--GCCACCAATAT
* * * ** * * *
30083 TAGATGGCAGAATAGATTTCTCGGGAAATACCTCAACGTT
63 TAGAAGGCA-AATAAATTCCTCAAGAAATGCCTCAACATC
* ** * *
30123 CAAATCACGATCAACTTGATTTGGGTGTGTTGGTGGTGGATTTAGTCCGCCGCCACCAATATTAG
1 CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATTTAGTCCACCGCCACCAATATTAG
* * *
30188 AAGGCAAATCAAGTTCCTCAAGAAGTGTCTCAACATC
66 AAGGCAAAT-AAATTCCTCAAGAAATGCCTCAACATC
** * * **
30225 CATGTCACGATTAGCTTGACTTGCATGTGTTGGTGGCGGATACAAGT-CACCGTGCC-CC---A-
1 CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGAT-TTAGTCCACC--GCCACCAATAT
* ** * ** * * * *
30284 TAGATGGCAAAATAGGTTTCTCGGGAAATACCTTAACGTT
63 TAGAAGGC-AAATAAATTCCTCAAGAAATGCCTCAACATC
* * * * *
30324 CAAATCACGATCAACTAGATTTGGATGTGTTGGTGGCGGGTTTAGTCCGCCGCCACCAATATTAG
1 CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATTTAGTCCACCGCCACCAATATTAG
30389 AAGGCAAATAAAGTTCCTCAA-AAAGTGCCTCAACATC
66 AAGGCAAATAAA-TTCCTCAAGAAA-TGCCTCAACATC
** * * * * **
30426 CATGTCACGATTAGCTTGACTTGCATGTGTTGGTGGCGGATTCAGTCCACTGCCACCAATCGTAG
1 CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATTTAGTCCACCGCCACCAATATTAG
* * * * * *
30491 ATGGCAGATCAAGTTCCTTAAGAAATATCC-CATCATC
66 AAGGCAAAT-AAATTCCTCAAGAAAT-GCCTCAACATC
* * * *
30528 CAAATCACGATCAATTTGACTTGCACGTGTTGGTGGTGGATATAGTCCACCGCCACCAAT
1 CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATTTAGTCCACCGCCACCAAT
30588 TGTAGATGGC
Statistics
Matches: 566, Mismatches: 166, Indels: 66
0.71 0.21 0.08
Matches are distributed among these distances:
97 6 0.01
98 12 0.02
99 184 0.33
100 15 0.03
101 19 0.03
102 305 0.54
103 19 0.03
104 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (101 bp):
CAAATCACGATCAACTTGACTTGCATGTGTTGGTGGCGGATTTAGTCCACCGCCACCAATATTAG
AAGGCAAATAAATTCCTCAAGAAATGCCTCAACATC
Found at i:29979 original size:201 final size:201
Alignment explanation
Indices: 29634--30466 Score: 1443
Period size: 201 Copynumber: 4.1 Consensus size: 201
29624 AATCACGGTC
** *
29634 AGCTTGACTTGCAAATGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGATGGTAGAATAGGTT
1 AGCTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGATGGCAGAATAGGTT
*
29699 TCTCGGGAAATACCTTAACGTTCAAATCACGATCAACTTGATTTGGATGTGTTGGTGGCGGATTT
66 TCTCGGGAAATACCTCAACGTTCAAATCACGATCAACTTGATTTGGATGTGTTGGTGGCGGATTT
* *
29764 AGTCCACCGCCACCAATATTAGAAGGCAAATCAAATTCGTCAAGAAGTGCCTCAACATCCATGTC
131 AGTCCGCCGCCACCAATATTAGAAGGCAAATCAAATTCCTCAAGAAGTGCCTCAACATCCATGTC
29829 ACGATT
196 ACGATT
* * *
29835 AGCTTGACTTGCATGAGTTGGTGGCGGATACAAATCACCGTGCCGCATAGATGGCAGAATAGGTT
1 AGCTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGATGGCAGAATAGGTT
* *
29900 TCTCAGGAAATACCTCAACGTTCAAATCAGGATCAACTTGATTTGGATGTGTTGGTGGCGGATTT
66 TCTCGGGAAATACCTCAACGTTCAAATCACGATCAACTTGATTTGGATGTGTTGGTGGCGGATTT
29965 AGTCCGCCGCCACCAATATTAGAAGGCAAATCAAATTCCTCAAGAAGTGCCTCAACATCCATGTC
131 AGTCCGCCGCCACCAATATTAGAAGGCAAATCAAATTCCTCAAGAAGTGCCTCAACATCCATGTC
30030 ACGATT
196 ACGATT
** *
30036 AGCTTGACTTGCAACTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGATGGCAGAATAGATT
1 AGCTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGATGGCAGAATAGGTT
* *
30101 TCTCGGGAAATACCTCAACGTTCAAATCACGATCAACTTGATTTGGGTGTGTTGGTGGTGGATTT
66 TCTCGGGAAATACCTCAACGTTCAAATCACGATCAACTTGATTTGGATGTGTTGGTGGCGGATTT
* *
30166 AGTCCGCCGCCACCAATATTAGAAGGCAAATCAAGTTCCTCAAGAAGTGTCTCAACATCCATGTC
131 AGTCCGCCGCCACCAATATTAGAAGGCAAATCAAATTCCTCAAGAAGTGCCTCAACATCCATGTC
30231 ACGATT
196 ACGATT
*
30237 AGCTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGATGGCAAAATAGGTT
1 AGCTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGATGGCAGAATAGGTT
* * *
30302 TCTCGGGAAATACCTTAACGTTCAAATCACGATCAACTAGATTTGGATGTGTTGGTGGCGGGTTT
66 TCTCGGGAAATACCTCAACGTTCAAATCACGATCAACTTGATTTGGATGTGTTGGTGGCGGATTT
*
30367 AGTCCGCCGCCACCAATATTAGAAGGCAAAT-AAAGTTCCTCAAAAAGTGCCTCAACATCCATGT
131 AGTCCGCCGCCACCAATATTAGAAGGCAAATCAAA-TTCCTCAAGAAGTGCCTCAACATCCATGT
30431 CACGATT
195 CACGATT
30438 AGCTTGACTTGCATGTGTTGGTGGCGGAT
1 AGCTTGACTTGCATGTGTTGGTGGCGGAT
30467 TCAGTCCACT
Statistics
Matches: 596, Mismatches: 35, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
200 2 0.00
201 594 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (201 bp):
AGCTTGACTTGCATGTGTTGGTGGCGGATACAAGTCACCGTGCCCCATAGATGGCAGAATAGGTT
TCTCGGGAAATACCTCAACGTTCAAATCACGATCAACTTGATTTGGATGTGTTGGTGGCGGATTT
AGTCCGCCGCCACCAATATTAGAAGGCAAATCAAATTCCTCAAGAAGTGCCTCAACATCCATGTC
ACGATT
Found at i:32768 original size:13 final size:14
Alignment explanation
Indices: 32744--32772 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32734 AATAAATATT
32744 TTATACTATTTAAA
1 TTATACTATTTAAA
32758 TTATA-TATTTAAA
1 TTATACTATTTAAA
32771 TT
1 TT
32773 TTTAAAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATACTATTTAAA
Found at i:33866 original size:108 final size:108
Alignment explanation
Indices: 33670--34287 Score: 809
Period size: 108 Copynumber: 5.8 Consensus size: 108
33660 TGGTGAAACG
* * *
33670 GGTTTATTTCCGCCGTGACCGGGTGAAGAAGGTGGTACAGGTGCCTGAGGAAGTACGCCAAAGTT
1 GGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGTACAGGTGCCTGAGGAAGTACACCAAAGTT
* * *
33735 CAAAGCACGACCAGTTTGCCTGACATAGGACGGAGGCGAAAGC
66 CAAAGCACGACCAGCTTGACTGACATAGGACGGAGGCGCAAGC
*
33778 GGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGTACTGGTGCCTGAGGAAGTACACCAAAGTT
1 GGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGTACAGGTGCCTGAGGAAGTACACCAAAGTT
* * **
33843 CAAAGCACGACCAGCTTGACTGACATAGAACGGCGGCTAAAGC
66 CAAAGCACGACCAGCTTGACTGACATAGGACGGAGGCGCAAGC
* * * * * *
33886 AGCTTATTTCCACCGTGACCGGGTGAAGATGGTGGGACGGGCGCTTGAGGAAGTACACCAAAGTT
1 GGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGTACAGGTGCCTGAGGAAGTACACCAAAGTT
* * * *
33951 CAAAGCAGGACCAGATTGACTTACATGGGACGGAGGCGCAA-C
66 CAAAGCACGACCAGCTTGACTGACATAGGACGGAGGCGCAAGC
* *
33993 --TTTATTTCCACCGTGACCGGGTGAAGAGGGTGGTACAGGTGCCTAAGGAAGTACACCAAAGTT
1 GGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGTACAGGTGCCTGAGGAAGTACACCAAAGTT
* * *
34056 CAAAGCAGGACCAGAC-TGACTTACATGGGACGGAGGCGCAA-C
66 CAAAGCACGACCAG-CTTGACTGACATAGGACGGAGGCGCAAGC
* * *
34098 --TTTATTTCCACCGTGACCGGGTGAAGAGGGTGGTACAGGTGCATGAGGAAGTACACCGAAGTT
1 GGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGTACAGGTGCCTGAGGAAGTACACCAAAGTT
* * *
34161 CAAAGCACGACCAGCTTAACTGACATAGGACGGCGGAGCAAGC
66 CAAAGCACGACCAGCTTGACTGACATAGGACGGAGGCGCAAGC
* * ** * * *
34204 GGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGGACGGGCACCTGAGGAAGCACAACTAAGTT
1 GGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGTACAGGTGCCTGAGGAAGTACACCAAAGTT
* *
34269 CAAAACACGACGAGCTTGA
66 CAAAGCACGACCAGCTTGA
34288 TTTATTTGGT
Statistics
Matches: 453, Mismatches: 52, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
104 1 0.00
105 189 0.42
106 1 0.00
107 1 0.00
108 261 0.58
ACGTcount: A:0.28, C:0.22, G:0.31, T:0.19
Consensus pattern (108 bp):
GGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGTACAGGTGCCTGAGGAAGTACACCAAAGTT
CAAAGCACGACCAGCTTGACTGACATAGGACGGAGGCGCAAGC
Found at i:34255 original size:318 final size:320
Alignment explanation
Indices: 33672--34272 Score: 936
Period size: 318 Copynumber: 1.9 Consensus size: 320
33662 GTGAAACGGG
* * *
33672 TTTATTTCCGCCGTGACCGGGTGAAGAAGGTGGTACAGGTGCCTGAGGAAGTACGCCAAAGTTCA
1 TTTATTTCCACCGTGACCGGGTGAAGAAGGTGGTACAGGTGCCTAAGGAAGTACACCAAAGTTCA
** *
33737 AAGCACGACCAGTTTGCCTGACATAGGACGGAGGCGAAAGCGGTTTATTTCCACCGTGACCGGGT
66 AAGCACGACCAGACTGACTGACATAGGACGGAGGCGAAAGC-GTTTATTTCCACCGTGACCGGGT
* * * *
33802 GAAGATGGTGGTACTGGTGCCTGAGGAAGTACACCAAAGTTCAAAGCACGACCAGCTTGACTGAC
130 GAAGAGGGTGGTACAGGTGCATGAGGAAGTACACCAAAGTTCAAAGCACGACCAGCTTAACTGAC
** * *
33867 ATAGAACGGCGGCTAAAGCAGCTTATTTCCACCGTGACCGGGTGAAGATGGTGGGACGGGCGCTT
195 ATAGAACGGCGGAGAAAGCAGCTTATTTCCACCGTGACCGGGTGAAGATGGTGGGACGGGCACCT
* *
33932 GAGGAAGTACACCAAAGTTCAAAGCAGGACCAGATTGACTTACATGGGACGGAGGCGCAAC
260 GAGGAAGCACAACAAAGTTCAAAGCAGGACCAGATTGACTTACATGGGACGGAGGCGCAAC
*
33993 TTTATTTCCACCGTGACCGGGTGAAGAGGGTGGTACAGGTGCCTAAGGAAGTACACCAAAGTTCA
1 TTTATTTCCACCGTGACCGGGTGAAGAAGGTGGTACAGGTGCCTAAGGAAGTACACCAAAGTTCA
* * * *
34058 AAGCAGGACCAGACTGACTTACATGGGACGGAGGCGCAA-C-TTTATTTCCACCGTGACCGGGTG
66 AAGCACGACCAGACTGACTGACATAGGACGGAGGCGAAAGCGTTTATTTCCACCGTGACCGGGTG
*
34121 AAGAGGGTGGTACAGGTGCATGAGGAAGTACACCGAAGTTCAAAGCACGACCAGCTTAACTGACA
131 AAGAGGGTGGTACAGGTGCATGAGGAAGTACACCAAAGTTCAAAGCACGACCAGCTTAACTGACA
* * * *
34186 TAGGACGGCGGAGCAAGCGGTTTATTTCCACCGTGACCGGGTGAAGATGGTGGGACGGGCACCTG
196 TAGAACGGCGGAGAAAGCAGCTTATTTCCACCGTGACCGGGTGAAGATGGTGGGACGGGCACCTG
*
34251 AGGAAGCACAACTAAGTTCAAA
261 AGGAAGCACAACAAAGTTCAAA
34273 ACACGACGAG
Statistics
Matches: 253, Mismatches: 27, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
318 159 0.63
320 1 0.00
321 93 0.37
ACGTcount: A:0.28, C:0.22, G:0.31, T:0.19
Consensus pattern (320 bp):
TTTATTTCCACCGTGACCGGGTGAAGAAGGTGGTACAGGTGCCTAAGGAAGTACACCAAAGTTCA
AAGCACGACCAGACTGACTGACATAGGACGGAGGCGAAAGCGTTTATTTCCACCGTGACCGGGTG
AAGAGGGTGGTACAGGTGCATGAGGAAGTACACCAAAGTTCAAAGCACGACCAGCTTAACTGACA
TAGAACGGCGGAGAAAGCAGCTTATTTCCACCGTGACCGGGTGAAGATGGTGGGACGGGCACCTG
AGGAAGCACAACAAAGTTCAAAGCAGGACCAGATTGACTTACATGGGACGGAGGCGCAAC
Found at i:34568 original size:17 final size:17
Alignment explanation
Indices: 34543--34582 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
34533 TTTTATGTGC
* *
34543 TATATTAATGTTTATTT
1 TATAATAATGTATATTT
34560 TATAATAATGTATATTT
1 TATAATAATGTATATTT
34577 TA-AATA
1 TATAATA
34583 TTAAAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TATAATAATGTATATTT
Found at i:36889 original size:24 final size:24
Alignment explanation
Indices: 36846--36891 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
36836 ACAATAAACT
**
36846 ATTACGAAAATAGCTTTTTTTATA
1 ATTACGAAAATAGCACTTTTTATA
36870 ATTACGAAAATAGCACTTTTTA
1 ATTACGAAAATAGCACTTTTTA
36892 AAAATAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (24 bp):
ATTACGAAAATAGCACTTTTTATA
Found at i:36939 original size:59 final size:59
Alignment explanation
Indices: 36867--37005 Score: 201
Period size: 59 Copynumber: 2.4 Consensus size: 59
36857 AGCTTTTTTT
* * *
36867 ATAATTACGAAAATAGCA-C-TTTTTAAAAATAATTACCAAAATATCACCTTTTTTAAAAA
1 ATAATTACCAAAATAGCACCGTTTTAAAAAATAATTACCAAAATATCACC-GTTTT-AAAA
*
36926 ATAATTACCAAAATATCACCGTTTTAAAAAATAATTACCAAAATATCACCGTTTTAAAA
1 ATAATTACCAAAATAGCACCGTTTTAAAAAATAATTACCAAAATATCACCGTTTTAAAA
*
36985 ATAATTACCAAAATATCACCG
1 ATAATTACCAAAATAGCACCG
37006 GGTCGGGTCG
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
59 41 0.55
60 5 0.07
61 28 0.38
ACGTcount: A:0.49, C:0.17, G:0.04, T:0.31
Consensus pattern (59 bp):
ATAATTACCAAAATAGCACCGTTTTAAAAAATAATTACCAAAATATCACCGTTTTAAAA
Found at i:36994 original size:29 final size:30
Alignment explanation
Indices: 36867--37005 Score: 212
Period size: 30 Copynumber: 4.7 Consensus size: 30
36857 AGCTTTTTTT
* * *
36867 ATAATTACGAAAATAGCA-C-TTTTTAAAA
1 ATAATTACCAAAATATCACCGTTTTAAAAA
*
36895 ATAATTACCAAAATATCACCTTTTTTAAAAA
1 ATAATTACCAAAATATCACC-GTTTTAAAAA
36926 ATAATTACCAAAATATCACCGTTTTAAAAA
1 ATAATTACCAAAATATCACCGTTTTAAAAA
36956 ATAATTACCAAAATATCACCGTTTT-AAAA
1 ATAATTACCAAAATATCACCGTTTTAAAAA
36985 ATAATTACCAAAATATCACCG
1 ATAATTACCAAAATATCACCG
37006 GGTCGGGTCG
Statistics
Matches: 104, Mismatches: 4, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
28 16 0.15
29 26 0.25
30 34 0.33
31 28 0.27
ACGTcount: A:0.49, C:0.17, G:0.04, T:0.31
Consensus pattern (30 bp):
ATAATTACCAAAATATCACCGTTTTAAAAA
Found at i:44927 original size:17 final size:17
Alignment explanation
Indices: 44905--44937 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
44895 AGCTTAGTGA
*
44905 TATTCTTGGGTTATTTC
1 TATTCTAGGGTTATTTC
44922 TATTCTAGGGTTATTT
1 TATTCTAGGGTTATTT
44938 TGGTCATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.09, G:0.18, T:0.58
Consensus pattern (17 bp):
TATTCTAGGGTTATTTC
Found at i:45478 original size:231 final size:231
Alignment explanation
Indices: 45075--45542 Score: 864
Period size: 231 Copynumber: 2.0 Consensus size: 231
45065 TTCTTAACTC
45075 AGAGATTTTTAGGTCAATTGTCTTCTCAGAAGTTACCAACAGGTTATCAGAAATTTTCTATACAA
1 AGAGATTTTTAGGTCAATTGTCTTCTCAGAAGTTACCAACAGGTTATCAGAAATTTTCTATACAA
*
45140 AGATAGGATCTTAACAATTAAACGTAATTTATCGAGTTAAGTATAAATCCTCAAAGCACTTTCTC
66 AGATAGGATCTTAACAATTAAACGTAATTTATCGAGTTAAATATAAATCCTCAAAGCACTTTCTC
* * *
45205 ATTCAGGGTCAATTCGGACTATTTTTACCTCTCAAGGGCATTTTTGTAATTTCTTAATCAAATAA
131 ATTCAGGGTCAACTCGGACTATTTTTACCTCTCAAGGGCATTTTTATAATTTCTTAACCAAATAA
45270 TTTCGATATTAACTCTTAACAAAAATAATATAATTT
196 TTTCGATATTAACTCTTAACAAAAATAATATAATTT
* *
45306 AGAGATTTTTAGGTCAATTGTCTTCTCAGAAGTTACCAACAGGTTATCAGGAATTTTCTGTACAA
1 AGAGATTTTTAGGTCAATTGTCTTCTCAGAAGTTACCAACAGGTTATCAGAAATTTTCTATACAA
*
45371 AGATAGGATCTTAACAATTAAACGTAATTTATCGAGTTAAATATAAATCCTCAAAGTACTTTCTC
66 AGATAGGATCTTAACAATTAAACGTAATTTATCGAGTTAAATATAAATCCTCAAAGCACTTTCTC
45436 ATTCAGGGTCAACTCGGACTATTTTTACCTCTCAAGGGCATTTTTATAATTTCTTAACCAAATAA
131 ATTCAGGGTCAACTCGGACTATTTTTACCTCTCAAGGGCATTTTTATAATTTCTTAACCAAATAA
*
45501 TTTCGATATTAATTCTTAACAAAAATAATATAATTT
196 TTTCGATATTAACTCTTAACAAAAATAATATAATTT
45537 AGAGAT
1 AGAGAT
45543 CCTATGATTA
Statistics
Matches: 229, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
231 229 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (231 bp):
AGAGATTTTTAGGTCAATTGTCTTCTCAGAAGTTACCAACAGGTTATCAGAAATTTTCTATACAA
AGATAGGATCTTAACAATTAAACGTAATTTATCGAGTTAAATATAAATCCTCAAAGCACTTTCTC
ATTCAGGGTCAACTCGGACTATTTTTACCTCTCAAGGGCATTTTTATAATTTCTTAACCAAATAA
TTTCGATATTAACTCTTAACAAAAATAATATAATTT
Found at i:48200 original size:23 final size:23
Alignment explanation
Indices: 48139--48200 Score: 106
Period size: 23 Copynumber: 2.7 Consensus size: 23
48129 CTCGTATAAA
*
48139 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCATGTAGAAT
48162 TGCACCGAAGTGCCATGTAGAAT
1 TGCACCGAAGTGCCATGTAGAAT
*
48185 TGCACCGAAGTTCCAT
1 TGCACCGAAGTGCCAT
48201 ATAAAATGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (23 bp):
TGCACCGAAGTGCCATGTAGAAT
Found at i:53181 original size:23 final size:23
Alignment explanation
Indices: 53163--53222 Score: 120
Period size: 23 Copynumber: 2.6 Consensus size: 23
53153 CTCGTATAAA
53163 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCGCGTAGAAT
53186 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCGCGTAGAAT
53209 TGCACCGAAGTGCC
1 TGCACCGAAGTGCC
53223 ATATAAAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.25, C:0.28, G:0.30, T:0.17
Consensus pattern (23 bp):
TGCACCGAAGTGCCGCGTAGAAT
Found at i:55799 original size:30 final size:28
Alignment explanation
Indices: 55756--55859 Score: 93
Period size: 31 Copynumber: 3.4 Consensus size: 28
55746 GCAGCGAGGG
55756 ATTTTGATC-AAATTTATTGGTTAAATTGTT
1 ATTTT-ATCTAAATTTA-TGGTTAAATTG-T
* *
55786 ATTTTATCTAAATTTCAAGGTTCAAATTAAT
1 ATTTTATCTAAATTT-ATGGTT-AAATT-GT
*
55817 ATTTTATCTAAAGTTTAGTGGTCAAATTAGT
1 ATTTTATCTAAA-TTTA-TGGTTAAATT-GT
55848 ATTTTATCTAAA
1 ATTTTATCTAAA
55860 ATTCAATGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
29 3 0.05
30 15 0.24
31 39 0.62
32 6 0.10
ACGTcount: A:0.35, C:0.07, G:0.11, T:0.48
Consensus pattern (28 bp):
ATTTTATCTAAATTTATGGTTAAATTGT
Found at i:55820 original size:31 final size:31
Alignment explanation
Indices: 55785--55879 Score: 106
Period size: 31 Copynumber: 3.1 Consensus size: 31
55775 GTTAAATTGT
55785 TATTTTATCTAAATTTCAAGGTTCAAATTAA
1 TATTTTATCTAAATTTCAAGGTTCAAATTAA
* *
55816 TATTTTATCTAAAGTTT--AGTGGTCAAATTAG
1 TATTTTATCTAAA-TTTCAAG-GTTCAAATTAA
* *
55847 TATTTTATCTAAAATTCAATGATT-AAATTAA
1 TATTTTATCTAAATTTCAA-GGTTCAAATTAA
55878 TA
1 TA
55880 ATTAAACCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
30 4 0.08
31 43 0.81
32 5 0.09
33 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.45
Consensus pattern (31 bp):
TATTTTATCTAAATTTCAAGGTTCAAATTAA
Found at i:55856 original size:62 final size:61
Alignment explanation
Indices: 55756--55879 Score: 155
Period size: 62 Copynumber: 2.0 Consensus size: 61
55746 GCAGCGAGGG
* * * *
55756 ATTTTGATCAAATTTATTGGTTAAATTGTTATTTTATCTAAATTTCAA-GGTTCAAATTAAT
1 ATTTTGATCAAATTTAGTGGTCAAATTGTTATTTTATCTAAAATTCAATGATT-AAATTAAT
55817 ATTTT-ATCTAAAGTTTAGTGGTCAAATTAG-TATTTTATCTAAAATTCAATGATTAAATTAAT
1 ATTTTGATC-AAA-TTTAGTGGTCAAATT-GTTATTTTATCTAAAATTCAATGATTAAATTAAT
55879 A
1 A
55880 ATTAAACCAT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
60 3 0.05
61 8 0.15
62 40 0.73
63 4 0.07
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.47
Consensus pattern (61 bp):
ATTTTGATCAAATTTAGTGGTCAAATTGTTATTTTATCTAAAATTCAATGATTAAATTAAT
Found at i:58957 original size:54 final size:54
Alignment explanation
Indices: 58899--59005 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 54
58889 CGTTTCGTCT
* *
58899 TTCGTCGGCCTTTTCGGTGCTCGAAGAAACGTTGCCTTTGTCGTCTTCGGAATG
1 TTCGTCGGCCTTTTCGGTGCTCGAAGAAACGTTGCCTTCGTCGTCTTCCGAATG
* * *
58953 TTCGTCGTCCTTTTCGTTGCTTGAAGAAACGTTGCCTTCGTCGTCTTCCGAAT
1 TTCGTCGGCCTTTTCGGTGCTCGAAGAAACGTTGCCTTCGTCGTCTTCCGAAT
59006 TACCCTCGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.13, C:0.25, G:0.24, T:0.37
Consensus pattern (54 bp):
TTCGTCGGCCTTTTCGGTGCTCGAAGAAACGTTGCCTTCGTCGTCTTCCGAATG
Found at i:65316 original size:171 final size:171
Alignment explanation
Indices: 64798--65319 Score: 667
Period size: 175 Copynumber: 3.0 Consensus size: 171
64788 TTCGGGGTTG
* ** * *
64798 AAATTTGTGTTCAATATCAATCTCATTCTTCCCCTCCAAGTATGATGTAGAGTTTATGAATCTTG
1 AAATTTATGTTCAATATTGATCTCATTCTTCCCCTCAAAGTATGATGTAGAGTTAATGAATCTTG
* * *
64863 TTTAAGACTAATTTGGTAGCTGATTGAAATGGTTCTGTTTAGTGTTTGCTGCCTGTTTAAGTAGA
66 TTTAGGACT-ATTCGGTAGCTGATTGAAATGGTT-T-TTT--TGTTTACTGCCTGTTTAAGTAGA
* * *
64928 ATTGTTACTCTCT-TGATGGCATTTCTAATTCATAGTTGTTGAACT
126 ATTGTTACTCTCTCTGATGGCATTGCTAATTCGTTGTTGTTGAACT
*
64973 AAATTTATGTTCAATATTGATCTCATTCTTCCCCTCGAAGACCGAAGTATGATGTAGAGTCAATG
1 AAATTTATGTTCAATATTGATCTCATTCTTCCCCTC----A---AAGTATGATGTAGAGTTAATG
* * *
65038 AATCCTGTTTAGGACTATTTCGGTAGCTGATTGAAATGG---TTTTGTCTACTGCCTG-TTAAGC
59 AATCTTGTTTAGGACTA-TTCGGTAGCTGATTGAAATGGTTTTTTTGTTTACTGCCTGTTTAAGT
* *
65099 GGAATTGTTGCTCTCTCTGATGGCATTGCTAATTCGTTGTTGTTGAACT
123 AGAATTGTTACTCTCTCTGATGGCATTGCTAATTCGTTGTTGTTGAACT
* * * * * *
65148 AAATTTATGTTCGATATTGATCTCGTTCTTCCTCTCAAAGTATGGTTTAGAGTTGATGAATCTTG
1 AAATTTATGTTCAATATTGATCTCATTCTTCCCCTCAAAGTATGATGTAGAGTTAATGAATCTTG
65213 TTTAGGACTATTCGGTAGCTGATTGAAATGGTTTTTTTGTTTACTGCCTGTTTAAGTAGAATTGT
66 TTTAGGACTATTCGGTAGCTGATTGAAATGGTTTTTTTGTTTACTGCCTGTTTAAGTAGAATTGT
* *
65278 TACTCTCTCTGATGGCATTGCTTATCCGTTGTTGTTGAACT
131 TACTCTCTCTGATGGCATTGCTAATTCGTTGTTGTTGAACT
65319 A
1 A
65320 GACTAATAGA
Statistics
Matches: 303, Mismatches: 31, Indels: 30
0.83 0.09 0.08
Matches are distributed among these distances:
167 21 0.07
168 33 0.11
170 15 0.05
171 52 0.17
174 19 0.06
175 106 0.35
177 3 0.01
181 1 0.00
182 53 0.17
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (171 bp):
AAATTTATGTTCAATATTGATCTCATTCTTCCCCTCAAAGTATGATGTAGAGTTAATGAATCTTG
TTTAGGACTATTCGGTAGCTGATTGAAATGGTTTTTTTGTTTACTGCCTGTTTAAGTAGAATTGT
TACTCTCTCTGATGGCATTGCTAATTCGTTGTTGTTGAACT
Found at i:67379 original size:29 final size:28
Alignment explanation
Indices: 67346--67407 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 28
67336 TTTTTTGTAT
* *
67346 TATAAGAATTAAATTAAAAAGATTAAAA
1 TATAAGAATCAAAGTAAAAAGATTAAAA
**
67374 GTATAAGAATCAAAGTAAAAATTTTAAAA
1 -TATAAGAATCAAAGTAAAAAGATTAAAA
67403 TATAA
1 TATAA
67408 TTATACATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (28 bp):
TATAAGAATCAAAGTAAAAAGATTAAAA
Found at i:67433 original size:16 final size:16
Alignment explanation
Indices: 67408--67446 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
67398 TAAAATATAA
*
67408 TTATACATAACAAATT
1 TTATAAATAACAAATT
*
67424 TTATAAATAATAAATT
1 TTATAAATAACAAATT
*
67440 TTTTAAA
1 TTATAAA
67447 AGAATAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (16 bp):
TTATAAATAACAAATT
Found at i:67452 original size:17 final size:18
Alignment explanation
Indices: 67422--67457 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
67412 ACATAACAAA
*
67422 TTTTATAAATAATAAATT
1 TTTTATAAAGAATAAATT
67440 TTTTA-AAAGAATAAATT
1 TTTTATAAAGAATAAATT
67457 T
1 T
67458 ATAAATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
TTTTATAAAGAATAAATT
Found at i:67462 original size:16 final size:17
Alignment explanation
Indices: 67419--67462 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
67409 TATACATAAC
*
67419 AAATTTTAT-AAATAAT
1 AAATTTTATAAAAGAAT
*
67435 AAATTTTTTAAAAGAAT
1 AAATTTTATAAAAGAAT
67452 AAA-TTTATAAA
1 AAATTTTATAAA
67463 TTTATTCGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 15 0.62
17 9 0.38
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (17 bp):
AAATTTTATAAAAGAAT
Found at i:67694 original size:2 final size:2
Alignment explanation
Indices: 67687--67711 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
67677 ATCATTCAAT
67687 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
67712 TTCAAATCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74241 original size:33 final size:33
Alignment explanation
Indices: 74211--74271 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
74201 ACATATAATT
* *
74211 TTTTTAAT-AAAATTAAA-TATTTAAATTATAA
1 TTTTAAATAAAAATTAAATTATTGAAATTATAA
74242 TTTTAAATAAAAATTAAATTATTGAAATTA
1 TTTTAAATAAAAATTAAATTATTGAAATTA
74272 ATTGATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 7 0.27
32 9 0.35
33 10 0.38
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (33 bp):
TTTTAAATAAAAATTAAATTATTGAAATTATAA
Found at i:74571 original size:27 final size:27
Alignment explanation
Indices: 74515--74572 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
74505 TTTAGTGATT
**
74515 TTAAATAAAAATAGATCTATATTTTCA
1 TTAAATAAAAATAGATCTATATCATCA
74542 TTAAATAAAAATAGGATC-ATATACAT-A
1 TTAAATAAAAATA-GATCTATAT-CATCA
74569 TTAA
1 TTAA
74573 CTGTAGACGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.36
Consensus pattern (27 bp):
TTAAATAAAAATAGATCTATATCATCA
Found at i:74619 original size:16 final size:15
Alignment explanation
Indices: 74595--74633 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
74585 GATTTCGACC
*
74595 ATATCATATAATGAAT
1 ATATTATATAAT-AAT
74611 ATATTATATAATAAT
1 ATATTATATAATAAT
74626 ATA-TATAT
1 ATATTATAT
74634 TTATATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 6 0.27
16 11 0.50
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (15 bp):
ATATTATATAATAAT
Found at i:86485 original size:105 final size:105
Alignment explanation
Indices: 86298--87071 Score: 1415
Period size: 105 Copynumber: 7.4 Consensus size: 105
86288 AGGTTTTACC
* * *
86298 CAGAGTCAATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
86363 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
86403 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
86468 ACGAAGGGACCGTTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
86508 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
86573 ATGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAACT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
86613 CA-AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
86677 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
86717 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
86782 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
86822 CAGAGCCAATTTCAACTTCACAACGAATGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
86887 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
86927 CAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
86992 ACGAAGGGACCACTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
*
87032 CAGGGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
87072 GGAACAATAC
Statistics
Matches: 648, Mismatches: 20, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
104 101 0.16
105 547 0.84
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
Found at i:86880 original size:314 final size:315
Alignment explanation
Indices: 86298--87071 Score: 1424
Period size: 314 Copynumber: 2.5 Consensus size: 315
86288 AGGTTTTACC
* *
86298 CAGAGTCAATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACG
86363 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
* * *
86428 AAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGTTGGTTGTCAACA
131 AAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
86493 AACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGC
196 AACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGC
*
86558 AAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAACT
261 AAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAACT
86613 CA-AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACG
86677 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
86742 AAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
131 AAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
*
86807 AACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAATGATATTGGACTCCAGACAACGC
196 AACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGC
*
86872 AAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
261 AAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAACT
* *
86927 CAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACG
* * *
86992 ACGAAGGGACCACTGGTTGTCAACAAACATTTCTCAATTTCAGGGCCAATTTCAACTTCACAACG
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
87057 AAGGATATTGGACTC
131 AAGGATATTGGACTC
87072 GGAACAATAC
Statistics
Matches: 445, Mismatches: 13, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
314 306 0.69
315 139 0.31
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (315 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACG
AAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA
AACATTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGC
AAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAACT
Found at i:88913 original size:32 final size:33
Alignment explanation
Indices: 88868--88931 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
88858 ATTCGGATCG
* *
88868 GATTTTTTATAAAAAAAATTTGGGATCGGGTCA
1 GATTTTTTATAAAAAAAAATCGGGATCGGGTCA
*
88901 GATTTTTT-TAAAAAAAAATCGGGTTCGGGTC
1 GATTTTTTATAAAAAAAAATCGGGATCGGGTC
88932 GGGTCGTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 20 0.71
33 8 0.29
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (33 bp):
GATTTTTTATAAAAAAAAATCGGGATCGGGTCA
Found at i:88966 original size:33 final size:33
Alignment explanation
Indices: 88924--89001 Score: 131
Period size: 33 Copynumber: 2.4 Consensus size: 33
88914 AAAAATCGGG
*
88924 TTCGGGTCGGGTCGTG-TTTTTTTAAGTTTGATA
1 TTCGGGTCGGGTCG-GATTTTTTTAAGTGTGATA
88957 TTCGGGTCGGGTCGGATTTTTTTAAGTGTGATA
1 TTCGGGTCGGGTCGGATTTTTTTAAGTGTGATA
88990 TTCGGGTCGGGT
1 TTCGGGTCGGGT
89002 TCATGGTGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
32 1 0.02
33 42 0.98
ACGTcount: A:0.12, C:0.10, G:0.35, T:0.44
Consensus pattern (33 bp):
TTCGGGTCGGGTCGGATTTTTTTAAGTGTGATA
Found at i:89592 original size:16 final size:16
Alignment explanation
Indices: 89571--89620 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
89561 CATGTTTCAG
*
89571 ATTCAGATTCTAATTC
1 ATTCAGATTCCAATTC
89587 ATTCAGATTCCAATTC
1 ATTCAGATTCCAATTC
*
89603 CTTCACAGATTCCAATTC
1 ATT--CAGATTCCAATTC
89621 CCTCAAAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 17 0.57
18 13 0.43
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTCAGATTCCAATTC
Found at i:94744 original size:102 final size:102
Alignment explanation
Indices: 94563--94768 Score: 376
Period size: 102 Copynumber: 2.0 Consensus size: 102
94553 ATCATGCTAG
*
94563 GATCCTATTTTTGCATGATTGAGCCAAGATACTAAAACAAATCACTTTGCAGTATATCTTTTTCT
1 GATCCTATTTTTGCATGATTGAGCCAAGATACTAAAACAAATCACTTTGCAGTACATCTTTTTCT
* *
94628 TCAATTTTATGCTTTGCTTCAATGCCAGAACTCTACA
66 TCAACTTTACGCTTTGCTTCAATGCCAGAACTCTACA
94665 GATCCTATTTTTGCATGATTGAGCCAAGATACTAAAACAAATCACTTTGCAGTACATCTTTTTCT
1 GATCCTATTTTTGCATGATTGAGCCAAGATACTAAAACAAATCACTTTGCAGTACATCTTTTTCT
*
94730 TCAACTTTACGCTTTGCTTCATTGCCAGAACTCTACA
66 TCAACTTTACGCTTTGCTTCAATGCCAGAACTCTACA
94767 GA
1 GA
94769 GTTTTCATAT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (102 bp):
GATCCTATTTTTGCATGATTGAGCCAAGATACTAAAACAAATCACTTTGCAGTACATCTTTTTCT
TCAACTTTACGCTTTGCTTCAATGCCAGAACTCTACA
Found at i:97903 original size:3 final size:3
Alignment explanation
Indices: 97895--97929 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
97885 AGCTTCTAGT
*
97895 GAA GAA GAA CAAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA G
97930 GTGGAGGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.93
4 2 0.07
ACGTcount: A:0.66, C:0.03, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:98914 original size:36 final size:36
Alignment explanation
Indices: 98873--98948 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
98863 ATTTTCGGGA
*
98873 TTTTGCTAATTTTGGCAAAATTCGAATAAATACGAT
1 TTTTGCTAATTTTGGCAAAATTCGAATAAAGACGAT
*
98909 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
1 TTTTGCTAATTTTGGCAAAATTCGAATAAAGACGAT
98945 TTTT
1 TTTT
98949 TTTGCTATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (36 bp):
TTTTGCTAATTTTGGCAAAATTCGAATAAAGACGAT
Found at i:122153 original size:2 final size:2
Alignment explanation
Indices: 122137--122180 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
122127 ATTGATTAGT
*
122137 TA TA T- TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
122177 TA TA
1 TA TA
122181 GGAATTGCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:129115 original size:24 final size:23
Alignment explanation
Indices: 129088--129147 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 23
129078 CTGTTCATAT
* *
129088 AATTTGTACCGAAGTGCCACGTAG
1 AATTTGTCCCGAAG-ACCACGTAG
129112 AATTTGTCCCGAAAGACCACGTAG
1 AATTTGTCCCG-AAGACCACGTAG
129136 AA-TTGTCCCGAA
1 AATTTGTCCCGAA
129148 AAACCGCGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 2 0.06
23 8 0.24
24 20 0.61
25 3 0.09
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (23 bp):
AATTTGTCCCGAAGACCACGTAG
Found at i:129145 original size:23 final size:24
Alignment explanation
Indices: 129104--129160 Score: 89
Period size: 23 Copynumber: 2.4 Consensus size: 24
129094 TACCGAAGTG
*
129104 CCACGTAGAATTTGTCCCGAAAGA
1 CCACGTAGAATTTGTCCCGAAAAA
129128 CCACGTAGAA-TTGTCCCGAAAAA
1 CCACGTAGAATTTGTCCCGAAAAA
*
129151 CCGCGTAGAA
1 CCACGTAGAA
129161 CCCTAGACTC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 21 0.68
24 10 0.32
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.18
Consensus pattern (24 bp):
CCACGTAGAATTTGTCCCGAAAAA
Found at i:131099 original size:99 final size:100
Alignment explanation
Indices: 130927--131125 Score: 382
Period size: 99 Copynumber: 2.0 Consensus size: 100
130917 CCAGGTCACT
130927 GTGAAACCCTAGTTTTTAGTTTCACCATAAAAAGGTTTACTGCAAATAGTAAAAATAATTTAGCA
1 GTGAAACCCTAGTTTTTAGTTTCACCATAAAAAGGTTTACTGCAAATAGTAAAAATAATTTAGCA
130992 TATTTTGAAAAATTTTAATTGGTTGGCAGAATGAA
66 TATTTTGAAAAATTTTAATTGGTTGGCAGAATGAA
*
131027 GTGAAACCCTAGTTTTTAGTTTCACCAT-AAAAGGTTTACTGTAAATAGTAAAAATAATTTAGCA
1 GTGAAACCCTAGTTTTTAGTTTCACCATAAAAAGGTTTACTGCAAATAGTAAAAATAATTTAGCA
131091 TATTTTGAAAAATTTTAATTGGTTGGCAGAATGAA
66 TATTTTGAAAAATTTTAATTGGTTGGCAGAATGAA
131126 ATGCATGGTA
Statistics
Matches: 98, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
99 70 0.71
100 28 0.29
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.36
Consensus pattern (100 bp):
GTGAAACCCTAGTTTTTAGTTTCACCATAAAAAGGTTTACTGCAAATAGTAAAAATAATTTAGCA
TATTTTGAAAAATTTTAATTGGTTGGCAGAATGAA
Found at i:134243 original size:2 final size:2
Alignment explanation
Indices: 134236--134267 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
134226 ATCTAAATGG
134236 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
134268 AACAAAAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:137175 original size:27 final size:27
Alignment explanation
Indices: 137137--137193 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
137127 TGCAAATCGA
*
137137 GGAAGCGGTGGAACATGAGGAAGTGCT
1 GGAAGCGGTGGAACACGAGGAAGTGCT
*
137164 GGAAGCGGTGGAACACGAGGTAGTGCT
1 GGAAGCGGTGGAACACGAGGAAGTGCT
137191 GGA
1 GGA
137194 TCACGTGCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.12, G:0.46, T:0.14
Consensus pattern (27 bp):
GGAAGCGGTGGAACACGAGGAAGTGCT
Found at i:143995 original size:35 final size:34
Alignment explanation
Indices: 143955--144032 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 34
143945 AACACAGTCC
143955 TCAATTTCATTCTAAACCCTAAATTTCAAAATAAT
1 TCAATTT-ATTCTAAACCCTAAATTTCAAAATAAT
* * *
143990 TCAATTATATTTTAAACCCTAAATTTTAAAATACT
1 TCAATT-TATTCTAAACCCTAAATTTCAAAATAAT
144025 TCAATTTA
1 TCAATTTA
144033 GGGTTTAGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
34 2 0.05
35 36 0.92
36 1 0.03
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.41
Consensus pattern (34 bp):
TCAATTTATTCTAAACCCTAAATTTCAAAATAAT
Found at i:144066 original size:35 final size:35
Alignment explanation
Indices: 144027--144101 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
144017 AAAATACTTC
144027 AATTTAGGGTTTAGAATATAATTAAAGTATTTTGG
1 AATTTAGGGTTTAGAATATAATTAAAGTATTTTGG
* * *
144062 AATTTGGGGTTTAGAATGTAATTAAAGTGTTTTGG
1 AATTTAGGGTTTAGAATATAATTAAAGTATTTTGG
144097 AATTT
1 AATTT
144102 TGAACATGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (35 bp):
AATTTAGGGTTTAGAATATAATTAAAGTATTTTGG
Found at i:147149 original size:20 final size:20
Alignment explanation
Indices: 147124--147164 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
147114 GAATTTCACC
*
147124 AAATGCAACTATATGCTCCT
1 AAATGCAACTATATGATCCT
*
147144 AAATGCATCTATATGATCCT
1 AAATGCAACTATATGATCCT
147164 A
1 A
147165 TATGAGCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (20 bp):
AAATGCAACTATATGATCCT
Found at i:151860 original size:21 final size:21
Alignment explanation
Indices: 151844--151891 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
151834 ATGTGCATCA
151844 ATGCATATTCAAGGTGCACCG
1 ATGCATATTCAAGGTGCACCG
*
151865 ATGCACATTCAAGGTGCACCG
1 ATGCATATTCAAGGTGCACCG
151886 ATGCAT
1 ATGCAT
151892 CAAGGGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (21 bp):
ATGCATATTCAAGGTGCACCG
Found at i:152095 original size:20 final size:20
Alignment explanation
Indices: 152030--152106 Score: 75
Period size: 20 Copynumber: 3.7 Consensus size: 20
152020 AGGTGATTTG
* * *
152030 TGCATCGATGCACGGGT-AT
1 TGCATCGATGCACTGTTGAA
*
152049 TGCATCGATGCACATGCTAAAGAA
1 TGCATCGATGCAC-TG-T--TGAA
152073 TGCATCGATGCACTGTTGAA
1 TGCATCGATGCACTGTTGAA
152093 TGCATCGATGCACT
1 TGCATCGATGCACT
152107 TCAAGAGAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
19 13 0.27
20 18 0.38
22 1 0.02
23 2 0.04
24 14 0.29
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (20 bp):
TGCATCGATGCACTGTTGAA
Found at i:154146 original size:60 final size:59
Alignment explanation
Indices: 154053--154178 Score: 216
Period size: 60 Copynumber: 2.1 Consensus size: 59
154043 TAGATCTCAG
154053 GGTGAAGCAAGAGATGATAGATTAGCTGAAAGTAGTAATTCACCTGCCCTGGCCAGGCAA
1 GGTGAAGCAAGAGATGATAGATTAGCTGAAAGTAGTAATTCACCTG-CCTGGCCAGGCAA
* *
154113 GGTGAAGCAAGAGATGATAGATTAGCTGAAAGTAGTAATTCACCTGCCTTGTCAGGCAA
1 GGTGAAGCAAGAGATGATAGATTAGCTGAAAGTAGTAATTCACCTGCCTGGCCAGGCAA
*
154172 TGTGAAG
1 GGTGAAG
154179 GACAGGTAAC
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
59 17 0.27
60 46 0.73
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (59 bp):
GGTGAAGCAAGAGATGATAGATTAGCTGAAAGTAGTAATTCACCTGCCTGGCCAGGCAA
Found at i:156666 original size:21 final size:21
Alignment explanation
Indices: 156637--156690 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
156627 CTGAGCTATA
*
156637 TGCATCGATGCACATTCAAGG
1 TGCACCGATGCACATTCAAGG
156658 TGCACCGATGCACATTCAAGG
1 TGCACCGATGCACATTCAAGG
156679 TGCACCGATGCA
1 TGCACCGATGCA
156691 TCAAGGGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (21 bp):
TGCACCGATGCACATTCAAGG
Found at i:156854 original size:64 final size:63
Alignment explanation
Indices: 156720--156880 Score: 191
Period size: 64 Copynumber: 2.5 Consensus size: 63
156710 AATTGTTCAG
* * * *
156720 TGTGTATCGATGCATAGGAAGTGCATCGATGCACCTATTAAAATGGAAACATCGAATGCAATT
1 TGTGCATCGATGCATAGGAAGTGCATCGATGCACCCATTAAAATGAAAACATCGAAGGCAATT
* * **
156783 GGTGCATCGATGCATAAGG-AGTGCATCGATGCATCCCCTTAAAATGAAAACATCGAAGGTGATT
1 TGTGCATCGATGCAT-AGGAAGTGCATCGATGCA-CCCATTAAAATGAAAACATCGAAGGCAATT
* *
156847 TGTGCATCGATGCA-CGGATACTGCATCGATGCAC
1 TGTGCATCGATGCATAGGA-AGTGCATCGATGCAC
156881 ATGCTAAAGA
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
62 2 0.02
63 28 0.34
64 53 0.64
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (63 bp):
TGTGCATCGATGCATAGGAAGTGCATCGATGCACCCATTAAAATGAAAACATCGAAGGCAATT
Found at i:156914 original size:20 final size:20
Alignment explanation
Indices: 156849--156925 Score: 75
Period size: 20 Copynumber: 3.7 Consensus size: 20
156839 AGGTGATTTG
* * *
156849 TGCATCGATGCACGGAT-AC
1 TGCATCGATGCACTGTTGAA
*
156868 TGCATCGATGCACATGCTAAAGAA
1 TGCATCGATGCAC-TG-T--TGAA
156892 TGCATCGATGCACTGTTGAA
1 TGCATCGATGCACTGTTGAA
156912 TGCATCGATGCACT
1 TGCATCGATGCACT
156926 TCAAGAGAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
19 13 0.27
20 18 0.38
22 1 0.02
23 2 0.04
24 14 0.29
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (20 bp):
TGCATCGATGCACTGTTGAA
Found at i:158089 original size:30 final size:30
Alignment explanation
Indices: 158021--158120 Score: 170
Period size: 30 Copynumber: 3.4 Consensus size: 30
158011 GGTTCTTCGG
*
158021 GACCTATGGATAGTTACCGAGGATC-TTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
158050 GA-C-CTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
158078 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
158108 GACCTCTGGATAG
1 GACCTCTGGATAG
158121 GTCCTTCGGA
Statistics
Matches: 67, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
27 19 0.28
28 7 0.10
29 3 0.04
30 38 0.57
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:159014 original size:60 final size:60
Alignment explanation
Indices: 158921--159047 Score: 245
Period size: 60 Copynumber: 2.1 Consensus size: 60
158911 TAGCTCTCGG
*
158921 GGTGAAGCAAGAGATGATAGATTAGCTGAAAGTAGTAATTCACCTGCCCTGGCCAGGCAA
1 GGTGAAGCAAGAGATGATAGATTAGCTAAAAGTAGTAATTCACCTGCCCTGGCCAGGCAA
158981 GGTGAAGCAAGAGATGATAGATTAGCTAAAAGTAGTAATTCACCTGCCCTGGCCAGGCAA
1 GGTGAAGCAAGAGATGATAGATTAGCTAAAAGTAGTAATTCACCTGCCCTGGCCAGGCAA
159041 GGTGAAG
1 GGTGAAG
159048 GACATGCAAC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 66 1.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (60 bp):
GGTGAAGCAAGAGATGATAGATTAGCTAAAAGTAGTAATTCACCTGCCCTGGCCAGGCAA
Found at i:161543 original size:21 final size:21
Alignment explanation
Indices: 161514--161567 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
161504 CTGAGCTATA
*
161514 TGCATCGATGCACATTCAAGG
1 TGCACCGATGCACATTCAAGG
161535 TGCACCGATGCACATTCAAGG
1 TGCACCGATGCACATTCAAGG
161556 TGCACCGATGCA
1 TGCACCGATGCA
161568 TCAAGGGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (21 bp):
TGCACCGATGCACATTCAAGG
Found at i:161729 original size:64 final size:62
Alignment explanation
Indices: 161597--161757 Score: 178
Period size: 64 Copynumber: 2.5 Consensus size: 62
161587 AATTGTTCAG
* * * * *
161597 TGTGTATCGATGCACAGGAAGTGCATCGATGCACCTATTAAAATGGAAACATCGAATGCAATT
1 TGTGCATCGATGCAAAGG-AGTGCATCGATGCACCCATTAAAATGAAAACATCGAAGGCAATT
* * **
161660 GGTGCATCGATGCATAAGGAGTGCATCGATGCATCCCCTTAAAATGAAAACATCGAAGGTGATT
1 TGTGCATCGATGCA-AAGGAGTGCATCGATGCA-CCCATTAAAATGAAAACATCGAAGGCAATT
* * *
161724 TGTGCATCGATGCACGAGTACTGCATCGATGCAC
1 TGTGCATCGATGCA-AAGGAGTGCATCGATGCAC
161758 ATGCTAAAGA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
63 27 0.33
64 55 0.67
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (62 bp):
TGTGCATCGATGCAAAGGAGTGCATCGATGCACCCATTAAAATGAAAACATCGAAGGCAATT
Found at i:161772 original size:24 final size:20
Alignment explanation
Indices: 161726--161802 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
161716 AGGTGATTTG
*
161726 TGCATCGATGCAC-G-AGTAC
1 TGCATCGATGCACTGTAG-AA
161745 TGCATCGATGCACATGCTAAAGAA
1 TGCATCGATGCAC-TG-T--AGAA
*
161769 TGCATCGATGCACTGTTGAA
1 TGCATCGATGCACTGTAGAA
161789 TGCATCGATGCACT
1 TGCATCGATGCACT
161803 TCAAGAGAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
19 13 0.26
20 17 0.34
21 1 0.02
22 1 0.02
23 2 0.04
24 14 0.28
25 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (20 bp):
TGCATCGATGCACTGTAGAA
Found at i:162940 original size:30 final size:30
Alignment explanation
Indices: 162906--163008 Score: 197
Period size: 30 Copynumber: 3.4 Consensus size: 30
162896 GGTTCTTCGG
*
162906 GACCTATGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
162936 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
162966 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
162996 GACCTCTGGATAG
1 GACCTCTGGATAG
163009 GTCCTTCGGA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
30 72 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:171322 original size:20 final size:20
Alignment explanation
Indices: 171297--171389 Score: 87
Period size: 20 Copynumber: 5.0 Consensus size: 20
171287 AGCAACAAAA
171297 TAAAACTGATTCTATCTAAT
1 TAAAACTGATTCTATCTAAT
*
171317 TAAAACTGATCCTATCTAA-
1 TAAAACTGATTCTATCTAAT
*
171336 TAACTAACAGA----A--TAA-
1 TAA--AACTGATTCTATCTAAT
171351 -AAAACTGATTCTATCTAAT
1 TAAAACTGATTCTATCTAAT
171370 TAAAACTGATTCTATCTAAT
1 TAAAACTGATTCTATCTAAT
171390 AACTAACAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 20
0.72 0.04 0.24
Matches are distributed among these distances:
12 5 0.08
14 2 0.03
15 3 0.05
16 1 0.02
17 1 0.02
18 3 0.05
19 3 0.05
20 37 0.62
21 5 0.08
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.34
Consensus pattern (20 bp):
TAAAACTGATTCTATCTAAT
Found at i:171357 original size:53 final size:53
Alignment explanation
Indices: 171290--171405 Score: 200
Period size: 53 Copynumber: 2.2 Consensus size: 53
171280 TAAAATTAGC
171290 AACAAAAT--AAAACTGATTCTATCTAATTAAAACTGATCCTATCTAATAACT
1 AACAAAATAAAAAACTGATTCTATCTAATTAAAACTGATCCTATCTAATAACT
* *
171341 AACAGAATAAAAAACTGATTCTATCTAATTAAAACTGATTCTATCTAATAACT
1 AACAAAATAAAAAACTGATTCTATCTAATTAAAACTGATCCTATCTAATAACT
171394 AACAAAATAAAA
1 AACAAAATAAAA
171406 TATCTAGTTA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
51 7 0.12
53 53 0.88
ACGTcount: A:0.51, C:0.16, G:0.04, T:0.29
Consensus pattern (53 bp):
AACAAAATAAAAAACTGATTCTATCTAATTAAAACTGATCCTATCTAATAACT
Found at i:175991 original size:20 final size:20
Alignment explanation
Indices: 175962--176001 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
175952 AGCAACAGAA
175962 TAAAACTGATTC-TATCTAAT
1 TAAAACTGA-TCATATCTAAT
*
175982 TAAAATTGATCATATCTAAT
1 TAAAACTGATCATATCTAAT
176002 AATTAACAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.40
Consensus pattern (20 bp):
TAAAACTGATCATATCTAAT
Found at i:176035 original size:53 final size:53
Alignment explanation
Indices: 175955--176070 Score: 164
Period size: 53 Copynumber: 2.2 Consensus size: 53
175945 TAAAATTAGC
* * * *
175955 AACAGAAT--AAAACTGATTCTATCTAATTAAAATTGATCATATCTAATAATT
1 AACAGAATAAAAAACTGATTATATATAATTAAAACTGATCATATCTAATAACT
*
176006 AACAGAATAAAAAACTGATTATATATAATTAAAACTGATCCTATCTAATAACT
1 AACAGAATAAAAAACTGATTATATATAATTAAAACTGATCATATCTAATAACT
*
176059 AACAAAATAAAA
1 AACAGAATAAAA
176071 TATCTAGTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 8 0.14
53 49 0.86
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (53 bp):
AACAGAATAAAAAACTGATTATATATAATTAAAACTGATCATATCTAATAACT
Found at i:190608 original size:24 final size:24
Alignment explanation
Indices: 190574--190685 Score: 119
Period size: 24 Copynumber: 4.9 Consensus size: 24
190564 ATGTTGGAGC
*
190574 TGATAGCGGCAGTGACACTGGTTG
1 TGATAGTGGCAGTGACACTGGTTG
190598 TGATAGTGGCAGTGACACTGGTTG
1 TGATAGTGGCAGTGACACTGGTTG
**
190622 TGATAGTGGCA--G----TGGTAC
1 TGATAGTGGCAGTGACACTGGTTG
* * *
190640 TGATAGCGGCAGCGACACTGATTG
1 TGATAGTGGCAGTGACACTGGTTG
*
190664 TGATAGTGGCAGTGATACTGGT
1 TGATAGTGGCAGTGACACTGGT
190686 AGCGGCAGTG
Statistics
Matches: 71, Mismatches: 11, Indels: 12
0.76 0.12 0.13
Matches are distributed among these distances:
18 14 0.20
20 1 0.01
22 1 0.01
24 55 0.77
ACGTcount: A:0.22, C:0.14, G:0.37, T:0.27
Consensus pattern (24 bp):
TGATAGTGGCAGTGACACTGGTTG
Found at i:190657 original size:42 final size:42
Alignment explanation
Indices: 190598--190698 Score: 157
Period size: 42 Copynumber: 2.4 Consensus size: 42
190588 ACACTGGTTG
* * *
190598 TGATAGTGGCAGTGACACTGGTTGTGATAGTGGCAGTGGTAC
1 TGATAGCGGCAGTGACACTGATTGTGATAGTGGCAGTGATAC
*
190640 TGATAGCGGCAGCGACACTGATTGTGATAGTGGCAGTGATAC
1 TGATAGCGGCAGTGACACTGATTGTGATAGTGGCAGTGATAC
*
190682 TGGTAGCGGCAGTGACA
1 TGATAGCGGCAGTGACA
190699 TCGGTGGTGG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.24, C:0.15, G:0.37, T:0.25
Consensus pattern (42 bp):
TGATAGCGGCAGTGACACTGATTGTGATAGTGGCAGTGATAC
Found at i:197028 original size:17 final size:18
Alignment explanation
Indices: 196989--197023 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
196979 GTATTTGCCA
*
196989 AATATTACTTTTATAATC
1 AATATTACTTTAATAATC
197007 AATATTACTTTAATAAT
1 AATATTACTTTAATAAT
197024 TATATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
AATATTACTTTAATAATC
Found at i:202130 original size:29 final size:30
Alignment explanation
Indices: 202058--202131 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 30
202048 GATTTTAATG
202058 GTTTAATGGTATAATTGAAGTCAAAATTAAA
1 GTTTAATGGTATAATTGAAGTC-AAATTAAA
* * * *
202089 ATTCAATGCTATAATTGGAG-C-AATTGAAA
1 GTTTAATGGTATAATTGAAGTCAAATT-AAA
202118 GTTTAATGGTATAA
1 GTTTAATGGTATAA
202132 CTGATACATC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
28 4 0.11
29 14 0.40
30 1 0.03
31 16 0.46
ACGTcount: A:0.42, C:0.05, G:0.18, T:0.35
Consensus pattern (30 bp):
GTTTAATGGTATAATTGAAGTCAAATTAAA
Found at i:202663 original size:18 final size:18
Alignment explanation
Indices: 202625--202662 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
202615 ATTATATTTC
202625 AAAGTAAAAGCAAAAAGA
1 AAAGTAAAAGCAAAAAGA
202643 AAAGTAAAAG-AAAAAGA
1 AAAGTAAAAGCAAAAAGA
202660 AAA
1 AAA
202663 AAATACAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.05
Consensus pattern (18 bp):
AAAGTAAAAGCAAAAAGA
Found at i:203467 original size:449 final size:451
Alignment explanation
Indices: 202637--203542 Score: 1337
Period size: 449 Copynumber: 2.0 Consensus size: 451
202627 AGTAAAAGCA
* *
202637 AAAAGAAAAGTAAAAGAAAAAGAAAAAAATACAATGATTTCAATCATTTTCTTTAAAGAAAAAAA
1 AAAAGAAAAGAAAAAGAAAAAGAAAAAAACACAATGATTTCAATCATTTTCTTTAAAGAAAAAAA
* * *
202702 AGCATGTTGTAAAATCAGGGGCTATCTGAACCTGAAGCAAAAAATGTAAGGGGACTCTTGAGATC
66 AGCATGTTGTAAAATCAGGGGCTATATGAACCCGAAGCAAAAAATGTAAGGGGACTCTCGAGATC
*
202767 GAAAAAAAACAATAAAAAATATGGAAATTTTGAGTAATTTTGAAGGTATTTTTGTTATTTATTTT
131 G-------A-AATAAAAAATATGGAAATTTTGAGTAATTTTGAAGGTATTTTTGTCATTTATTTT
* ***
202832 CGTAGTTCGAAACAAAATTTTTTTTATCTTGCATATGTAAATAAAACAATGGAATGAGAGTGATT
188 CATAGTTCGAAACAAAA--TAAATTATCTTGCATATGTAAATAAAACAATGGAATGAGAGTGATT
* *
202897 AGATTTTTTTACCTGAGAAGGGTGTCGATCGGGGTTGATTCGTGGTCGTCGGAGTGTTTGAGTAT
251 AGATTTTTTTACCTGAGAAGGGTGCCAATCGGGGTTGATTCGTGGTCGTCGGAGTGTTTGAG--T
*
202962 CGAAGGGTCGGGGGTTCCATTCCCATTCAAAAATCAATAAAAAGCAGAAAAAAGATTCAAAGATA
314 CGAAGGGTCGGGGGTTCCATTCCCATTCAAAAATCAATAAAAAGCAAAAAAAAGATTCAAAGATA
* *
203027 TTTTTCTGGTGTTTTTATTTTATTTTATTTTAGTTTAATTTTTGAAACAAAAAA-ATATAATAAA
379 TTTTTCT-G-GTATTT-TTTTATTTTATTTTAGTTTAATTTTCGAAACAAAAAATATATAATAAA
203091 AATGAGAGAAG
441 AATGAGAGAAG
* * *
203102 AAAAGTAAAAGAAAAATGCAAAAGAAAAAAACACGATGATTTCAATCATTTTGTTTAAAG-AAAA
1 AAAAG-AAAAGAAAAA-GAAAAAGAAAAAAACACAATGATTTCAATCATTTTCTTTAAAGAAAAA
*
203166 AAA-CATGTTGTAAAAT-AGGATGCTATATGAACCCGAAGCAAAAAAATGTAAGGGGACTCTCGA
64 AAAGCATGTTGTAAAATCAGG-GGCTATATGAACCCGAAGC-AAAAAATGTAAGGGGACTCTCGA
203229 GATCG-AA-AAAAAATAT-GAAATTTTTGAGTAATTTTGAAGGTATTTTTGTCATTTATTTTCAT
127 GATCGAAATAAAAAATATGGAAA-TTTTGAGTAATTTTGAAGGTATTTTTGTCATTTATTTTCAT
* *
203291 AGTTCGAAACAAAA-AAATTATCTTGCATGTGTAAATAAAACAATGGAATGAGAGTGGTTAGA-T
191 AGTTCGAAACAAAATAAATTATCTTGCATATGTAAATAAAACAATGGAATGAGAGTGATTAGATT
* *
203354 TTTTTACCTGAGAAGGGTGCCAATTGGGGTTGATTCGTGGTCGTTGGAGTGTTTGAG-CGAAGGG
256 TTTTTACCTGAGAAGGGTGCCAATCGGGGTTGATTCGTGGTCGTCGGAGTGTTTGAGTCGAAGGG
203418 TCGGGGGTTCCATTCCCATTCAAAAATCAATAAAAAGCAAAAAAAAGATTCAAAGATATTTTTCT
321 TCGGGGGTTCCATTCCCATTCAAAAATCAATAAAAAGCAAAAAAAAGATTCAAAGATATTTTTCT
* *
203483 GGTATTTTTTTATTTTATTTTATTTTAGTTTTCGAAACAAAAAATATATAATAAAAATGA
386 GGTATTTTTTTATTTTATTTTAGTTTAATTTTCGAAACAAAAAATATATAATAAAAATGA
203543 TAGTACATTG
Statistics
Matches: 410, Mismatches: 25, Indels: 30
0.88 0.05 0.06
Matches are distributed among these distances:
446 34 0.08
447 20 0.05
448 1 0.00
449 71 0.17
452 54 0.13
453 43 0.10
455 4 0.01
456 62 0.15
457 2 0.00
464 3 0.01
465 34 0.08
466 43 0.10
467 39 0.10
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (451 bp):
AAAAGAAAAGAAAAAGAAAAAGAAAAAAACACAATGATTTCAATCATTTTCTTTAAAGAAAAAAA
AGCATGTTGTAAAATCAGGGGCTATATGAACCCGAAGCAAAAAATGTAAGGGGACTCTCGAGATC
GAAATAAAAAATATGGAAATTTTGAGTAATTTTGAAGGTATTTTTGTCATTTATTTTCATAGTTC
GAAACAAAATAAATTATCTTGCATATGTAAATAAAACAATGGAATGAGAGTGATTAGATTTTTTT
ACCTGAGAAGGGTGCCAATCGGGGTTGATTCGTGGTCGTCGGAGTGTTTGAGTCGAAGGGTCGGG
GGTTCCATTCCCATTCAAAAATCAATAAAAAGCAAAAAAAAGATTCAAAGATATTTTTCTGGTAT
TTTTTTATTTTATTTTAGTTTAATTTTCGAAACAAAAAATATATAATAAAAATGAGAGAAG
Found at i:205574 original size:15 final size:15
Alignment explanation
Indices: 205521--205574 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
205511 GTTAAATTTG
205521 CAATTTATCATATAA
1 CAATTTATCATATAA
205536 -ACATTTAT-AT-TAA
1 CA-ATTTATCATATAA
* *
205549 TTAATTCATCATATAA
1 -CAATTTATCATATAA
205565 CAATTTATCA
1 CAATTTATCA
205575 AACATGGAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
13 3 0.10
14 8 0.26
15 17 0.55
16 3 0.10
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.43
Consensus pattern (15 bp):
CAATTTATCATATAA
Found at i:209409 original size:16 final size:16
Alignment explanation
Indices: 209376--209409 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
209366 TCCTAATAAC
*
209376 ATTATAAAAAATTCAA
1 ATTATAAAAAATTAAA
*
209392 ATTATAAAACATTAAA
1 ATTATAAAAAATTAAA
209408 AT
1 AT
209410 AAATAGGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTATAAAAAATTAAA
Found at i:209793 original size:178 final size:178
Alignment explanation
Indices: 209494--209843 Score: 691
Period size: 178 Copynumber: 2.0 Consensus size: 178
209484 CAATCACAAC
209494 ATAAAAAATCACGTCAGCTAATCATGTTATTGTAATTTCGCATGCAGTTGCTGTAAGTTAGGTCC
1 ATAAAAAATCACGTCAGCTAATCATGTTATTGTAATTTCGCATGCAGTTGCTGTAAGTTAGGTCC
*
209559 AATTCTATAGAAGGTCCATGTAGTTCGTGTTTTTAGCATATTCAGTCCCTCTAATGTAATTTGAA
66 AATTCTATAGAAGGTCCATGTAGTTCGTGTTTTTAGCATATTCAGTCACTCTAATGTAATTTGAA
209624 ACTTCAATAACTTAATAAAATAGTAGCCTTTAATTTTTTTTTAACTTA
131 ACTTCAATAACTTAATAAAATAGTAGCCTTTAATTTTTTTTTAACTTA
209672 ATAAAAAATCACGTCAGCTAATCATGTTATTGTAATTTCGCATGCAGTTGCTGTAAGTTAGGTCC
1 ATAAAAAATCACGTCAGCTAATCATGTTATTGTAATTTCGCATGCAGTTGCTGTAAGTTAGGTCC
209737 AATTCTATAGAAGGTCCATGTAGTTCGTGTTTTTAGCATATTCAGTCACTCTAATGTAATTTGAA
66 AATTCTATAGAAGGTCCATGTAGTTCGTGTTTTTAGCATATTCAGTCACTCTAATGTAATTTGAA
209802 ACTTCAATAACTTAATAAAATAGTAGCCTTTAATTTTTTTTT
131 ACTTCAATAACTTAATAAAATAGTAGCCTTTAATTTTTTTTT
209844 TAACAATCTA
Statistics
Matches: 171, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
178 171 1.00
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (178 bp):
ATAAAAAATCACGTCAGCTAATCATGTTATTGTAATTTCGCATGCAGTTGCTGTAAGTTAGGTCC
AATTCTATAGAAGGTCCATGTAGTTCGTGTTTTTAGCATATTCAGTCACTCTAATGTAATTTGAA
ACTTCAATAACTTAATAAAATAGTAGCCTTTAATTTTTTTTTAACTTA
Found at i:211695 original size:24 final size:25
Alignment explanation
Indices: 211649--211696 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
211639 CTTCTTGTAC
211649 TTTTCTTCGACATAGTGAATTTTTA
1 TTTTCTTCGACATAGTGAATTTTTA
* *
211674 TTTTCTTCTACAT-GTGATTTTTT
1 TTTTCTTCGACATAGTGAATTTTT
211697 CTTAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.19, C:0.12, G:0.10, T:0.58
Consensus pattern (25 bp):
TTTTCTTCGACATAGTGAATTTTTA
Found at i:217688 original size:19 final size:20
Alignment explanation
Indices: 217656--217693 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
217646 AAATTTTTAA
217656 TAAAAAATATTAAAAATATC
1 TAAAAAATATTAAAAATATC
*
217676 TAAAACATA-TAAAAATAT
1 TAAAAAATATTAAAAATAT
217694 ATTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (20 bp):
TAAAAAATATTAAAAATATC
Found at i:218959 original size:22 final size:22
Alignment explanation
Indices: 218934--219003 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
218924 TAAACATTGA
218934 TAATTATATAAAATAGACAAGT
1 TAATTATATAAAATAGACAAGT
* * * *
218956 TAA-TATA-ATGAATCATTAC-GGA
1 TAATTATATA-AAAT-A-GACAAGT
218978 TAATTATATAAAATAGACAAGT
1 TAATTATATAAAATAGACAAGT
219000 TAAT
1 TAAT
219004 ATAATAATCA
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
20 1 0.03
21 9 0.26
22 14 0.41
23 9 0.26
24 1 0.03
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (22 bp):
TAATTATATAAAATAGACAAGT
Found at i:218981 original size:44 final size:43
Alignment explanation
Indices: 218932--219018 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 43
218922 ATTAAACATT
218932 GATAATTATATAAAATAGACAAGTTAATATAATGAATCATTACG
1 GATAATTATATAAAATAGACAAGTTAATATAAT-AATCATTACG
218976 GATAATTATATAAAATAGACAAGTTAATATAATAATCATTACG
1 GATAATTATATAAAATAGACAAGTTAATATAATAATCATTACG
219019 TCAATATCGT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 10 0.23
44 33 0.77
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (43 bp):
GATAATTATATAAAATAGACAAGTTAATATAATAATCATTACG
Found at i:226292 original size:21 final size:22
Alignment explanation
Indices: 226266--226326 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
226256 TATTTGCATG
226266 TTTAAAATATTATAAATTT-AA
1 TTTAAAATATTATAAATTTAAA
*
226287 TTTAAATAATCTTA-AAATTTAAA
1 TTT-AA-AATATTATAAATTTAAA
*
226310 TTTATAA-ATTATAAATT
1 TTTAAAATATTATAAATT
226327 GGTTAACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
20 3 0.09
21 10 0.30
22 9 0.27
23 11 0.33
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTAAAATATTATAAATTTAAA
Found at i:226324 original size:22 final size:22
Alignment explanation
Indices: 226270--226324 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
226260 TGCATGTTTA
226270 AAAT-ATTAT-AAATTTAATTT
1 AAATAATTATAAAATTTAATTT
226290 AAATAATCT-TAAAATTTAAATTT
1 AAATAAT-TATAAAATTT-AATTT
*
226313 ATA-AATTATAAA
1 AAATAATTATAAA
226325 TTGGTTAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
20 4 0.14
21 4 0.14
22 14 0.48
23 7 0.24
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAATAATTATAAAATTTAATTT
Found at i:229592 original size:20 final size:21
Alignment explanation
Indices: 229539--229601 Score: 85
Period size: 20 Copynumber: 3.0 Consensus size: 21
229529 ATTTAATATT
229539 TTAAAATA-AAAAATTAAATTA
1 TTAAAATACAAAAATTAAA-TA
229560 TTAAAACATACAAAAATTAAATA
1 TT-AAA-ATACAAAAATTAAATA
229583 -TAAAATACAAAAATTAAAT
1 TTAAAATACAAAAATTAAAT
229602 TTTTAAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
20 15 0.38
21 5 0.13
22 4 0.10
23 5 0.13
24 10 0.26
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (21 bp):
TTAAAATACAAAAATTAAATA
Found at i:229737 original size:17 final size:18
Alignment explanation
Indices: 229715--229753 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
229705 AAAGTATCTA
229715 AAATTTTTAATGTTT-AT
1 AAATTTTTAATGTTTAAT
*
229732 AAATTTTTAATTTTTAAT
1 AAATTTTTAATGTTTAAT
229750 AAAT
1 AAAT
229754 AATAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
AAATTTTTAATGTTTAAT
Found at i:229824 original size:18 final size:19
Alignment explanation
Indices: 229792--229831 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
229782 TTTTTTTTAC
*
229792 TTTTTAATATTATTTTAATA
1 TTTTTAATA-TATTTAAATA
229812 TTTTTAATA-ATTTAAATA
1 TTTTTAATATATTTAAATA
229830 TT
1 TT
229832 ATTATTAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
20 9 0.47
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTAATATATTTAAATA
Found at i:231088 original size:214 final size:215
Alignment explanation
Indices: 230719--231147 Score: 833
Period size: 214 Copynumber: 2.0 Consensus size: 215
230709 TAACAGAGAG
230719 GTAATTTTTACAATTGCTAAATGTTGCTGATGAACACGATGATTTTGGTGAAATGATTGTAATTT
1 GTAATTTTTACAATTGCTAAATGTTGCTGATGAACACGATGATTTTGGTGAAATGATTGTAATTT
230784 TGATTTGGTTTTTGCAGAATGGACATGCTGGATTTATGTTATCTTGTTATGATGCCAAGCTTAGC
66 TGATTTGGTTTTTGCAGAATGGACATGCTGGATTTATGTTATCTTGTTATGATGCCAAGCTTAGC
230849 TATGATTCCAAGACTGATACCTTTCAGGCAAGGTAATTTGGTTATGGCATATTCGTCCGCAACGG
131 TATGATTCCAAGACTGATACCTTTCAGGCAAGGTAATTTGGTTATGGCATATTCGTCCGCAACGG
230914 CGAT-AATTTAGACCCGAAA
196 CGATAAATTTAGACCCGAAA
*
230933 GTAATTTTTATAATTGCTAAATGTTGCTGATGAACACGATGATTTTGGTGAAATGATTGTAATTT
1 GTAATTTTTACAATTGCTAAATGTTGCTGATGAACACGATGATTTTGGTGAAATGATTGTAATTT
230998 TGATTTGGTTTTTGCAGAATGGACATGCTGGATTTATGTTATCTTGTTATGATGCCAAGCTTAGC
66 TGATTTGGTTTTTGCAGAATGGACATGCTGGATTTATGTTATCTTGTTATGATGCCAAGCTTAGC
*
231063 TATGATTCCAAGACTGATACCTTTCAGGCAAGGTAATTTGGTTATGGCATATTCGTCGGCAACGG
131 TATGATTCCAAGACTGATACCTTTCAGGCAAGGTAATTTGGTTATGGCATATTCGTCCGCAACGG
231128 CGATAAATTTAGACCCGAAA
196 CGATAAATTTAGACCCGAAA
231148 ACGCGATGGA
Statistics
Matches: 212, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
214 197 0.93
215 15 0.07
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.37
Consensus pattern (215 bp):
GTAATTTTTACAATTGCTAAATGTTGCTGATGAACACGATGATTTTGGTGAAATGATTGTAATTT
TGATTTGGTTTTTGCAGAATGGACATGCTGGATTTATGTTATCTTGTTATGATGCCAAGCTTAGC
TATGATTCCAAGACTGATACCTTTCAGGCAAGGTAATTTGGTTATGGCATATTCGTCCGCAACGG
CGATAAATTTAGACCCGAAA
Found at i:234549 original size:2 final size:2
Alignment explanation
Indices: 234542--234569 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
234532 TGTCTCCTTT
234542 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
234570 GAATCCGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:242088 original size:28 final size:28
Alignment explanation
Indices: 242048--242106 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
242038 GAGAACTTTC
242048 ATCAAATTTAATGTCAAATTAATATTTT
1 ATCAAATTTAATGTCAAATTAATATTTT
242076 ATCAAATTTAATGTCAAATTAATATTTT
1 ATCAAATTTAATGTCAAATTAATATTTT
242104 ATC
1 ATC
242107 TAAAATCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.46
Consensus pattern (28 bp):
ATCAAATTTAATGTCAAATTAATATTTT
Found at i:250422 original size:64 final size:65
Alignment explanation
Indices: 250348--250527 Score: 197
Period size: 65 Copynumber: 2.8 Consensus size: 65
250338 TGACCGTTGG
* * *
250348 ACTCTCAGTGCATCGGTGCACTAAG-A-GTGCATCGATGCATAAAATGCATTCAATGCTTTGA-A
1 ACTCTGAGTGCATCGATGCA-T-AGTATGTGCATCGATGCATAAAATGCATTCAATGCTTTCATA
250410 AA
64 AA
* * * * *
250412 AGC-CTGAGTGCATCGATGTATGGTATGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAA
1 A-CTCTGAGTGCATCGATGCATAGTATGTGCATCGATGCATAAAATGCATTCAATGCTTTCATAA
250476 A
65 A
** * *
250477 ACTCTGAGTGCATCGATATATGGTATGTGCATCGATGCATCAAATGCATTC
1 ACTCTGAGTGCATCGATGCATAGTATGTGCATCGATGCATAAAATGCATTC
250528 GATGTTCAAT
Statistics
Matches: 102, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
62 1 0.01
63 2 0.02
64 47 0.46
65 52 0.51
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (65 bp):
ACTCTGAGTGCATCGATGCATAGTATGTGCATCGATGCATAAAATGCATTCAATGCTTTCATAAA
Found at i:250504 original size:65 final size:64
Alignment explanation
Indices: 250374--250533 Score: 250
Period size: 65 Copynumber: 2.5 Consensus size: 64
250364 TGCACTAAGA
* * * * *
250374 GTGCATCGATGCATAAAATGCATTCAATGCTTTGAAAAAGCCTGAGTGCATCGATGTATGGTAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAAAGCCTGAGTGCATCGATATATGGTAT
250438 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAA-CTCTGAGTGCATCGATATATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAAAGC-CTGAGTGCATCGATATATGGTA
250502 T
64 T
250503 GTGCATCGATGCATCAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
250534 CAATTAAATC
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
64 32 0.36
65 57 0.64
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAAAGCCTGAGTGCATCGATATATGGTAT
Found at i:266197 original size:27 final size:27
Alignment explanation
Indices: 266158--266215 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
266148 GGTGGTGGCA
*
266158 GCGGCATCGGGTAAAGGAATGGCGGCG
1 GCGGCATCGGGTAAAGGAAAGGCGGCG
* * *
266185 GCGGCATCTGGTAATGGAAAGGCGGTG
1 GCGGCATCGGGTAAAGGAAAGGCGGCG
266212 GCGG
1 GCGG
266216 TATCATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.17, G:0.48, T:0.14
Consensus pattern (27 bp):
GCGGCATCGGGTAAAGGAAAGGCGGCG
Found at i:267927 original size:9 final size:8
Alignment explanation
Indices: 267897--267947 Score: 59
Period size: 8 Copynumber: 6.1 Consensus size: 8
267887 TTTGCAAAAA
267897 AATTAAAT
1 AATTAAAT
*
267905 AAGTAAA-
1 AATTAAAT
267912 ATATTAAAT
1 A-ATTAAAT
267921 AATTTAAAT
1 AA-TTAAAT
267930 AATTAAAT
1 AATTAAAT
267938 AAATTAAAT
1 -AATTAAAT
267947 A
1 A
267948 CAAAATATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 1 0.03
8 19 0.51
9 17 0.46
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (8 bp):
AATTAAAT
Found at i:267946 original size:17 final size:17
Alignment explanation
Indices: 267897--267947 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 17
267887 TTTGCAAAAA
* *
267897 AATTAAATAAGTAAAAT
1 AATTAAATAAATTAAAT
*
267914 -ATTAAATAATTTAAAT
1 AATTAAATAAATTAAAT
267930 AATTAAATAAATTAAAT
1 AATTAAATAAATTAAAT
267947 A
1 A
267948 CAAAATATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
16 14 0.47
17 16 0.53
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AATTAAATAAATTAAAT
Found at i:267963 original size:33 final size:34
Alignment explanation
Indices: 267892--267963 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 34
267882 TTATATTTGC
* **
267892 AAAAA-AATTAAATAAGTAAAATATTAAATAATT
1 AAAAATAATTAAATAAATAAAATACAAAATAATT
* *
267925 -TAAATAATTAAATAAATTAAATACAAAAT-ATT
1 AAAAATAATTAAATAAATAAAATACAAAATAATT
267957 AAAAATA
1 AAAAATA
267964 TAATAAAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
32 6 0.19
33 25 0.81
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (34 bp):
AAAAATAATTAAATAAATAAAATACAAAATAATT
Found at i:275671 original size:23 final size:23
Alignment explanation
Indices: 275643--275687 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
275633 GCCTTGGTAT
*
275643 ATAATATTATATTTATTATTGAA
1 ATAATATTAGATTTATTATTGAA
275666 ATAATATTAGATTTATTATTGA
1 ATAATATTAGATTTATTATTGA
275688 TATTGTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (23 bp):
ATAATATTAGATTTATTATTGAA
Found at i:278752 original size:4 final size:4
Alignment explanation
Indices: 278743--278787 Score: 81
Period size: 4 Copynumber: 11.0 Consensus size: 4
278733 ACCCAAAAAT
278743 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATATA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA
278788 TCCCACCAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 36 0.90
5 4 0.10
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:283505 original size:688 final size:688
Alignment explanation
Indices: 282314--283688 Score: 2602
Period size: 688 Copynumber: 2.0 Consensus size: 688
282304 CTTTCTTTCG
*
282314 ATCAATTGTCGTAGATTTTGAAAGTTTTGAGGTATAGGGACTTTTGTTTTACTTTTTTTTACTGC
1 ATCAATGGTCGTAGATTTTGAAAGTTTTGAGGTATAGGGACTTTTGTTTTACTTTTTTTTACTGC
282379 AATGCTTAGATAGTAAATACAGAAATGATGGGTAAAATCACTCATTTGAAGACTGTTAAGTTGTT
66 AATGCTTAGATAGTAAATACAGAAATGATGGGTAAAATCACTCATTTGAAGACTGTTAAGTTGTT
282444 GAATATGTGTACAGAACAAGAACCCTAATTTTTATTCCGACTTCAACATACTCTTCTCCCCCATA
131 GAATATGTGTACAGAAC-A-AACCCTAATTTTTATTCCGACTTCAACATACTCTTCTCCCCCATA
282509 ACCCTACTTGATTTCACATGTAATAAGTGTTTTTCTTTGGGTGAAATGAAATGATGATACTGACA
194 ACCCTACTTGATTTCACATGTAATAAGTGTTTTTCTTTGGGTGAAATGAAATGATGATACTGACA
282574 TTAGATCTAGGATTTAAATTTGGACAACTCTTTTTGGACATGAATTTTCGGATGAGATGATACTC
259 TTAGATCTAGGATTTAAATTTGGACAACTCTTTTTGGACATGAATTTTCGGATGAGATGATACTC
282639 GACGGATCACTCTTCCGTCGAGTATTAAAGTTCGATTCTCATCGATAATCTCGATTTTTATACAA
324 GACGGATCACTCTTCCGTCGAGTATTAAAGTTCGATTCTCATCGATAATCTCGATTTTTATACAA
282704 TAATAAGAATCTAATATATGTTTGTTTCTAGATAATGCTAAGAGATCATCATGAAGATGCCAAAG
389 TAATAAGAATCTAATATATGTTTGTTTCTAGATAATGCTAAGAGATCATCATGAAGATGCCAAAG
282769 CTTGTCGTGTCTTGAACACTTAAATCTTTGATATATGAACCAGTGGGATGTCTCTGTCTATTGAC
454 CTTGTCGTGTCTTGAACACTTAAATCTTTGATATATGAACCAGTGGGATGTCTCTGTCTATTGAC
282834 TTTATTTTATTCTTATCTATGAAATATTCCCAATAATAATAAAGGAATTTTCGTTGTAATAGAAT
519 TTTATTTT-TTCTTATCTATGAAATATT-CCAATAATAATAAAGGAATTTTCGTTGTAATAGAAT
*
282899 ATTTCCCATTAGGGTTTGCAAATTTATTTTTTTTAAAGCTATTTATTTAAGTGAATTTA-GGTTG
582 A-TTCCCATTAGGGTTTGC-AATTTATTATTTTTAAAGCTATTTATTTAAGTGAATTTAGGGTTG
282963 TAACTAG-TTTGATACCTCT-AAAACAATCTAAAAGTGAGTGTAA
645 TAACTAGTTTTGATACCTCTAAAAACAATCTAAAAG-GAGTGTAA
283006 ATCAATGGTCGTAGATTTTGAAAGTTTTGAGGTATAGGGACTTTTGTTTTTACTTTTTTTTACTG
1 ATCAATGGTCGTAGATTTTGAAAGTTTTGAGGTATAGGGACTTTTG-TTTTACTTTTTTTTACTG
283071 CAATGCTTAGATAGTAAATACAGAAATGATGGGTAAAATCACTCATTTGAAGACTGTTAAGTTGT
65 CAATGCTTAGATAGTAAATACAGAAATGATGGGTAAAATCACTCATTTGAAGACTGTTAAGTTGT
283136 TGAATATGTGTACAGAAC-AACCCTAATTTTTATTCCGACTTCAACATACTCTTCTCCCCCATAA
130 TGAATATGTGTACAGAACAAACCCTAATTTTTATTCCGACTTCAACATACTCTTCTCCCCCATAA
283200 CCCTACTTGATTTCACATGTAATAAGTGTTTTTC-TTGGGTGAAATGAAATGATGATACTGACAT
195 CCCTACTTGATTTCACATGTAATAAGTGTTTTTCTTTGGGTGAAATGAAATGATGATACTGACAT
283264 TAGATCTAGGATTTAAATTTGGACAACTCTTTTTGGACATGAA-TTTCGGATGAGATGATACTCG
260 TAGATCTAGGATTTAAATTTGGACAACTCTTTTTGGACATGAATTTTCGGATGAGATGATACTCG
283328 ACGGATCACTCTTCCGTCGAGTATTAAAGTTCGATTCTCATCGATAATCTCGATTTTTATACAAT
325 ACGGATCACTCTTCCGTCGAGTATTAAAGTTCGATTCTCATCGATAATCTCGATTTTTATACAAT
283393 AATAAGAATCTAATATATGTTTGTTTCTAGATAATGCTAAGAGATCATCATTGAAGATGCCAAAG
390 AATAAGAATCTAATATATGTTTGTTTCTAGATAATGCTAAGAGATCATCA-TGAAGATGCCAAAG
283458 CTTGTCGTGTCTTGAACACTTAAATCTTTGATATATGAACC-GTGGGATGTCTCTGTCTATTGAC
454 CTTGTCGTGTCTTGAACACTTAAATCTTTGATATATGAACCAGTGGGATGTCTCTGTCTATTGAC
283522 TTTATTTTTTCTTATCTATGAAATATTCCAATAATAATAAAGGAATTTTCGTTGTAATAGAATAT
519 TTTATTTTTTCTTATCTATGAAATATTCCAATAATAATAAAGGAATTTTCGTTGTAATAGAATAT
283587 TCCCATTAGGGTTTGCAATTTATTATTTTTAAAGCTATTTATTTAAGTGAATTTAGGGTTGTAAC
584 TCCCATTAGGGTTTGCAATTTATTATTTTTAAAGCTATTTATTTAAGTGAATTTAGGGTTGTAAC
283652 TAGTTTTGATACCTCTAAAAACAATCTAAAAGGAGTG
649 TAGTTTTGATACCTCTAAAAACAATCTAAAAGGAGTG
283689 AGTGTAACAC
Statistics
Matches: 676, Mismatches: 2, Indels: 16
0.97 0.00 0.02
Matches are distributed among these distances:
684 38 0.06
685 29 0.04
686 54 0.08
687 34 0.05
688 167 0.25
689 128 0.19
690 80 0.12
692 45 0.07
693 101 0.15
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (688 bp):
ATCAATGGTCGTAGATTTTGAAAGTTTTGAGGTATAGGGACTTTTGTTTTACTTTTTTTTACTGC
AATGCTTAGATAGTAAATACAGAAATGATGGGTAAAATCACTCATTTGAAGACTGTTAAGTTGTT
GAATATGTGTACAGAACAAACCCTAATTTTTATTCCGACTTCAACATACTCTTCTCCCCCATAAC
CCTACTTGATTTCACATGTAATAAGTGTTTTTCTTTGGGTGAAATGAAATGATGATACTGACATT
AGATCTAGGATTTAAATTTGGACAACTCTTTTTGGACATGAATTTTCGGATGAGATGATACTCGA
CGGATCACTCTTCCGTCGAGTATTAAAGTTCGATTCTCATCGATAATCTCGATTTTTATACAATA
ATAAGAATCTAATATATGTTTGTTTCTAGATAATGCTAAGAGATCATCATGAAGATGCCAAAGCT
TGTCGTGTCTTGAACACTTAAATCTTTGATATATGAACCAGTGGGATGTCTCTGTCTATTGACTT
TATTTTTTCTTATCTATGAAATATTCCAATAATAATAAAGGAATTTTCGTTGTAATAGAATATTC
CCATTAGGGTTTGCAATTTATTATTTTTAAAGCTATTTATTTAAGTGAATTTAGGGTTGTAACTA
GTTTTGATACCTCTAAAAACAATCTAAAAGGAGTGTAA
Found at i:283963 original size:24 final size:24
Alignment explanation
Indices: 283932--283981 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
283922 ATTTGATATG
283932 GTTAACAAGTTAATCATTAAACTA
1 GTTAACAAGTTAATCATTAAACTA
283956 GTTAACAAGTTAATCATTAAACTA
1 GTTAACAAGTTAATCATTAAACTA
283980 GT
1 GT
283982 GTTTGATGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (24 bp):
GTTAACAAGTTAATCATTAAACTA
Found at i:289461 original size:32 final size:32
Alignment explanation
Indices: 289425--289498 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 32
289415 GTCTTTCGAG
289425 ACATATGGACAGGATTACCTATGTTCTAAG-GA
1 ACATATGGACAGGATTACCTA-GTTCTAAGAGA
* * **
289457 ACATATGGATA-GTTTACCTAGTTCTTCGAGA
1 ACATATGGACAGGATTACCTAGTTCTAAGAGA
289488 AC-TATGGACAG
1 ACATATGGACAG
289499 TTGTCGAGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 13 0.37
31 12 0.34
32 10 0.29
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (32 bp):
ACATATGGACAGGATTACCTAGTTCTAAGAGA
Found at i:295918 original size:15 final size:16
Alignment explanation
Indices: 295898--295938 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
295888 GTTTACTTCA
*
295898 AAATGATT-AAGCGTT
1 AAATGATTCAAACGTT
*
295913 AAATGATTCAAATGTT
1 AAATGATTCAAACGTT
295929 AAATGATTCA
1 AAATGATTCA
295939 GAGGCTCTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (16 bp):
AAATGATTCAAACGTT
Found at i:295947 original size:254 final size:249
Alignment explanation
Indices: 295466--295964 Score: 935
Period size: 254 Copynumber: 2.0 Consensus size: 249
295456 ATAATGATAT
295466 AAATCGAGAATGTAAACGTTAAATTTTCCTAGTATGTATGAAGAGAAATCTAGATAACATAAACG
1 AAATCGAGAATGTAAACGTTAAATTTTCCTAGTATGTATGAAGAGAAATCTAGATAACATAAACG
295531 TTATATCAAATTGTTTTAAAACAAATTTCAAATATAAGATATTAAGATGATAAATTCTTCAATCA
66 TTATATCAAATTGTTTTAAAACAAATTTCAAATATAAGATATTAAGATGATAAATTCTTCAATCA
295596 CATGTATGTGCTTTGTCAACTGCGACTTATGACTGTTTGTTTACTTCAAAATGATTAAGCATTAA
131 CATGTATGTGCTTTGTCAACTGCGACTTATGACTGTTTGTTTACTTCAAAATGATTAAGCATTAA
295661 ATGATTCAAATGTTAAATGATTCAGAGGCTCTGTATGAATTAACTCTGAAGAGA
196 ATGATTCAAATGTTAAATGATTCAGAGGCTCTGTATGAATTAACTCTGAAGAGA
295715 AAATCGAGAATGTTTAAACGTTAAATATTTTCCTAGTTATGTATGAAGAGAAATCTAGATAACAT
1 AAATCGAGAATG--TAAACGTT-AA-ATTTTCCTAG-TATGTATGAAGAGAAATCTAGATAACAT
295780 AAACGTTATATCAAATTGTTTTAAAACAAATTTCAAATATAAGATATTAAGATGATAAATTCTTC
61 AAACGTTATATCAAATTGTTTTAAAACAAATTTCAAATATAAGATATTAAGATGATAAATTCTTC
295845 AATCACATGTATGTGCTTTGTCAACTGCGACTTATGACTGTTTGTTTACTTCAAAATGATTAAGC
126 AATCACATGTATGTGCTTTGTCAACTGCGACTTATGACTGTTTGTTTACTTCAAAATGATTAAGC
* *
295910 GTTAAATGATTCAAATGTTAAATGATTCAGAGGCTCTGTATGGATTAACTCTGAA
191 ATTAAATGATTCAAATGTTAAATGATTCAGAGGCTCTGTATGAATTAACTCTGAA
295965 TGTGACATGT
Statistics
Matches: 243, Mismatches: 2, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
249 12 0.05
251 8 0.03
252 2 0.01
253 10 0.04
254 211 0.87
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (249 bp):
AAATCGAGAATGTAAACGTTAAATTTTCCTAGTATGTATGAAGAGAAATCTAGATAACATAAACG
TTATATCAAATTGTTTTAAAACAAATTTCAAATATAAGATATTAAGATGATAAATTCTTCAATCA
CATGTATGTGCTTTGTCAACTGCGACTTATGACTGTTTGTTTACTTCAAAATGATTAAGCATTAA
ATGATTCAAATGTTAAATGATTCAGAGGCTCTGTATGAATTAACTCTGAAGAGA
Found at i:298338 original size:18 final size:18
Alignment explanation
Indices: 298315--298349 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
298305 ACGATGTTCT
298315 AAATAAAATAATTGAAAA
1 AAATAAAATAATTGAAAA
* *
298333 AAATAAAGTTATTGAAA
1 AAATAAAATAATTGAAA
298350 GAGAGTGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATAAAATAATTGAAAA
Found at i:310666 original size:13 final size:13
Alignment explanation
Indices: 310648--310679 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
310638 TTATCTAAAA
310648 TTATAAATATATT
1 TTATAAATATATT
310661 TTATAAATATATT
1 TTATAAATATATT
310674 TT-TAAA
1 TTATAAA
310680 AGAATGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTATAAATATATT
Found at i:312772 original size:25 final size:26
Alignment explanation
Indices: 312683--312773 Score: 123
Period size: 26 Copynumber: 3.5 Consensus size: 26
312673 ACCGAAGTGC
312683 TAATACACAT-AAGATCGTGCCCACCA
1 TAATACACATAAAG-TCGTGCCCACCA
* * *
312709 TAATTCACATAAGGTCATGCCCACCA
1 TAATACACATAAAGTCGTGCCCACCA
312735 TAATACACATAAAGTCGTGCCCACCA
1 TAATACACATAAAGTCGTGCCCACCA
*
312761 T-ATACACTTAAAG
1 TAATACACATAAAG
312774 GCCTTACACA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
25 11 0.19
26 44 0.77
27 2 0.04
ACGTcount: A:0.38, C:0.29, G:0.11, T:0.22
Consensus pattern (26 bp):
TAATACACATAAAGTCGTGCCCACCA
Found at i:316967 original size:34 final size:36
Alignment explanation
Indices: 316922--317011 Score: 148
Period size: 34 Copynumber: 2.6 Consensus size: 36
316912 AATTCAAAGA
*
316922 TTTTGTGTTTCAAGAGAAACATTTTCAAAGG-TT-T
1 TTTTGTGTTTCAAGAGAAACAATTTCAAAGGTTTCT
*
316956 TTTTATGTTTCAAGAGAAACAATTTCAAAGGTTTCT
1 TTTTGTGTTTCAAGAGAAACAATTTCAAAGGTTTCT
316992 TTTTGTGTTTCAAGAGAAAC
1 TTTTGTGTTTCAAGAGAAAC
317012 TGTCTTAAGG
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
34 29 0.57
35 2 0.04
36 20 0.39
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (36 bp):
TTTTGTGTTTCAAGAGAAACAATTTCAAAGGTTTCT
Found at i:317231 original size:65 final size:65
Alignment explanation
Indices: 316997--317306 Score: 195
Period size: 65 Copynumber: 4.7 Consensus size: 65
316987 TTTCTTTTTG
* * * *
316997 TGTTTCAAGAGAAACTGTCTTAAGGGAGGCAAAATTTTGTTTCAA-GAGAAACATATTCAAAG-A
1 TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAA-TTTGTTTCAAGGA-AAACATATTCAAAGTT
317060 T-
64 TA
* * * * * *
317061 TG-AT-AAGAGAAACTGTCTCAAGAGAGATAAAACTTTGTTTCAAGGGAAAC-TGTCTCAAGAGA
1 TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAA-TTTGTTTCAAGGAAAACATAT-TC-A-A-A
***
317123 GACAAAA
61 G--TTTA
** * * * * ** *
317130 ACTTCCAAAAGAAACTGTCTCAAGGGATACGGAATTTGTTT-AATGTAAAACATATTCAAAGATT
1 TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTCAA-GGAAAACATATTCAAAG-TT
317194 T-
64 TA
* * * * * *
317195 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTATTTCAAGGGAAATATTTTCAATGTTTA
1 TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTCAAGGAAAACATATTCAAAGTTTA
*
317260 TGTTTCAATAGAAACTATCTCAAGGGAGACAAAATTTTGTTTCAAGG
1 TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAA-TTTGTTTCAAGG
317307 GAACCTATCT
Statistics
Matches: 186, Mismatches: 44, Indels: 30
0.72 0.17 0.12
Matches are distributed among these distances:
61 2 0.01
62 40 0.22
63 3 0.02
64 6 0.03
65 77 0.41
66 13 0.07
67 2 0.01
68 2 0.01
69 3 0.02
70 14 0.08
71 24 0.13
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (65 bp):
TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTCAAGGAAAACATATTCAAAGTTTA
Found at i:317315 original size:37 final size:37
Alignment explanation
Indices: 317260--317346 Score: 111
Period size: 37 Copynumber: 2.4 Consensus size: 37
317250 TCAATGTTTA
** * *
317260 TGTTTCAATAGAAACTATCTCAAGGGAGACAAAATTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACTT
*
317297 TGTTTCAAGGGAACCTATCTCAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACTT
**
317334 CATTTCAAGGGAA
1 TGTTTCAAGGGAA
317347 TTTTTTTTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.26
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACTT
Found at i:317315 original size:102 final size:104
Alignment explanation
Indices: 317186--317392 Score: 310
Period size: 103 Copynumber: 2.0 Consensus size: 104
317176 AAAACATATT
*
317186 CAAAGATTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAA-TTTATTTCAAGGGAAATATTT
1 CAAAGATTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACTTCATTTCAAGGGAAATATTT
* *
317250 TCAATGTTTATGTTTCAATAGAAACTATCTCAAGGGAGA
66 TCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGA
* * * *
317289 CAAA-ATTTTGTTTCAAGGGAACCTATCTCAAGAGAGACAAAACTTCATTTCAAGGGAATTTTTT
1 CAAAGATTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACTTCATTTCAAGGGAAATATTT
* * *
317353 TTAATGTTTATGTTTCAAGAGAAATTGTCTCAAGAGAGA
66 TCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGA
317392 C
1 C
317393 GAAACTTAGT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
102 36 0.39
103 57 0.61
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.33
Consensus pattern (104 bp):
CAAAGATTTTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAACTTCATTTCAAGGGAAATATTT
TCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGA
Done.