genome.fa.s8473.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008473.1 Hibiscus syriacus cultivar Beakdansim tig00111300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90714

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730--764	15	2.3	15	100	0	70	28	34	22	14	1.93
4234--4478	36	6.9	36	75	12	177	27	18	13	40	1.88
4261--4508	36	6.9	36	75	13	190	25	19	13	41	1.88
4265--4655	144	2.8	142	85	6	485	25	19	13	40	1.88
4542--4655	37	3.0	37	75	5	102	22	21	13	42	1.87
4696--4856	84	1.9	84	89	0	250	33	27	18	21	1.96
5168--5207	11	3.6	11	82	0	53	25	0	0	75	0.81
7417--7512	31	3.1	31	72	3	95	28	18	19	33	1.96
8194--8258	21	3.1	21	91	4	105	26	20	29	24	1.99
8976--9024	20	2.5	20	93	0	80	24	18	6	51	1.69
10641--10693	21	2.5	21	84	0	70	20	22	20	35	1.96
10677--10775	20	4.9	20	87	0	144	38	17	20	24	1.93
10677--10775	40	2.5	40	93	0	162	38	17	20	24	1.93
10970--11035	22	3.0	22	90	0	105	24	39	15	21	1.91
11343--11433	20	4.6	20	86	1	103	14	16	23	46	1.83
11397--11440	20	2.2	20	91	0	70	11	13	20	54	1.69
13306--13462	20	8.5	20	72	18	108	42	19	18	19	1.90
13329--13431	34	3.1	34	72	8	84	45	18	18	17	1.86
13507--13575	20	3.5	20	95	0	120	17	20	26	36	1.94
13490--13589	40	2.8	34	76	16	101	15	22	25	38	1.92
13560--13592	14	2.4	14	100	0	66	9	18	24	48	1.76
14080--14119	21	2.0	20	86	13	57	25	32	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15532--15567	14	2.6	14	90	0	54	30	0	22	47	1.52
15673--15768	33	2.9	34	87	3	140	43	19	21	14	1.87
15779--15845	20	3.7	19	73	20	72	11	22	19	46	1.82
15783--15878	33	2.8	33	90	3	138	12	23	21	41	1.87
15854--15943	20	4.5	20	84	2	119	20	20	25	34	1.96
18361--18407	24	2.0	24	95	0	85	34	17	21	27	1.95
18365--18416	24	2.2	24	82	0	59	38	19	19	23	1.93
19245--19331	20	4.3	20	92	0	138	24	19	26	29	1.98
19318--19370	20	2.7	20	90	0	88	20	20	20	37	1.94
19367--19412	21	2.2	21	92	0	74	39	17	26	17	1.91
19388--19475	40	2.2	40	80	10	99	29	18	27	25	1.98
24975--25049	34	2.2	34	97	0	141	16	13	32	38	1.87
27586--27628	18	2.4	18	80	0	50	46	0	44	9	1.35
48063--48113	20	2.5	20	81	18	61	33	1	0	64	1.05
48336--48411	38	2.0	38	100	0	152	5	36	13	44	1.66
50230--50255	7	3.7	7	100	0	52	26	11	15	46	1.80
53791--53837	22	2.1	23	88	4	69	23	12	25	38	1.90
58249--58296	21	2.3	21	92	0	78	50	4	4	41	1.41
58495--58551	26	2.2	26	96	0	105	54	10	12	22	1.68
61026--61058	15	2.1	16	94	5	59	39	0	0	60	0.97
71243--71339	42	2.3	42	89	0	140	23	19	24	31	1.98
71298--71788	80	6.1	80	91	0	793	33	17	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71298--71788	240	2.0	240	96	0	901	33	17	19	29	1.95
72268--72461	106	1.8	106	93	2	336	30	20	26	21	1.98
72255--72461	53	3.9	53	87	3	301	30	20	26	22	1.98

Tables:   1

The End!