genome.fa.s8474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008474.1 Hibiscus syriacus cultivar Beakdansim tig00111302_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115817

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4321--4379	29	2.0	29	100	0	118	49	13	13	23	1.78
8032--8075	23	2.0	23	82	8	56	45	0	4	50	1.22
8069--8107	13	3.0	13	84	0	51	46	0	0	53	1.00
9743--9792	21	2.4	21	96	0	91	6	34	20	40	1.77
28127--28180	20	2.7	19	75	8	63	33	31	18	16	1.93
28127--28242	21	5.6	21	68	7	67	34	25	18	20	1.96
28271--28566	20	14.6	20	76	9	251	38	26	17	18	1.92
28271--28566	41	7.3	40	82	6	283	38	26	17	18	1.92
28230--28463	102	2.3	102	96	1	425	37	27	16	18	1.92
28230--28521	102	2.9	102	90	4	396	38	26	16	18	1.92
28373--28565	81	2.4	80	88	2	242	39	25	17	17	1.91
29102--29180	20	3.9	21	86	5	94	51	17	18	11	1.75
29222--29277	14	3.6	14	74	21	58	8	25	23	42	1.82
29205--29277	33	2.2	33	97	0	137	10	21	21	45	1.83
29216--29297	33	2.5	33	91	2	128	12	24	21	41	1.87
29262--29317	20	2.8	20	80	20	80	16	25	19	39	1.91
31022--31401	94	4.1	94	94	1	629	22	12	18	47	1.81
31523--31549	14	1.9	14	100	0	54	48	29	14	7	1.71
31505--31568	33	1.9	33	100	0	128	48	29	15	6	1.70
31489--31574	19	4.8	19	81	13	110	47	27	17	6	1.73
31618--31704	20	4.3	20	91	2	131	20	17	21	40	1.92
33649--33684	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33869--33958	33	2.7	33	87	3	117	14	23	18	43	1.87
33930--34018	20	4.5	19	87	8	115	17	20	24	37	1.94
33930--34018	40	2.2	40	88	4	135	17	20	24	37	1.94
36451--36504	24	2.2	24	93	0	90	40	20	18	20	1.91
37365--37550	20	9.1	20	79	7	196	20	18	24	37	1.94
37345--37577	41	5.7	39	75	11	145	21	18	24	34	1.96
37363--37550	41	4.6	41	84	4	186	20	18	23	36	1.95
37404--37577	61	2.9	61	81	7	178	22	18	24	35	1.96
37563--37615	20	2.7	20	91	5	81	13	18	24	43	1.86
37583--37676	42	2.3	42	76	9	95	21	21	22	35	1.96
37665--37715	20	2.6	19	72	9	57	15	19	33	31	1.93
41986--42143	79	2.0	79	92	2	264	43	8	13	34	1.75
47388--47427	21	1.9	21	89	0	62	50	10	2	37	1.50
48114--48280	20	8.2	20	70	5	86	26	19	13	40	1.88
48077--48241	40	4.0	40	75	6	125	30	21	13	33	1.93
48229--48293	20	3.3	20	86	2	96	18	12	16	52	1.74
48254--48324	34	2.1	34	81	5	81	19	11	22	46	1.81
55974--56003	3	9.7	3	92	7	51	0	3	30	66	1.07
56865--56952	45	2.0	45	93	0	149	27	26	19	27	1.99
71113--71160	10	3.6	14	73	23	50	70	2	8	18	1.22
71101--71163	25	2.5	25	92	0	108	69	1	11	17	1.25
73611--73667	30	1.9	30	92	3	98	45	14	5	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74820--74878	27	2.2	27	90	0	91	35	11	16	35	1.86
75494--75588	23	4.4	21	79	9	86	28	26	21	24	1.99
75513--75593	23	3.7	23	80	8	105	27	25	23	23	2.00
75494--75588	44	2.2	42	87	7	129	28	26	21	24	1.99
77716--77744	13	2.2	13	100	0	58	34	6	6	51	1.55
79167--79208	21	2.0	21	85	0	57	35	11	33	19	1.88
79566--79673	21	4.8	21	76	18	110	35	32	10	22	1.87
79579--79633	28	2.0	28	92	0	92	36	34	7	21	1.81
79607--79694	42	2.1	42	93	0	149	35	34	9	21	1.85
79615--79708	21	4.5	21	86	5	127	34	34	9	22	1.87
79803--79926	42	3.0	42	88	5	175	24	12	37	25	1.91
85318--85376	30	1.9	30	86	3	82	33	6	8	50	1.59
91182--91431	117	2.1	117	88	0	392	32	19	32	16	1.94
91182--91493	117	2.7	116	84	4	342	32	19	32	15	1.93
92101--92135	15	2.3	15	95	0	61	20	11	31	37	1.88
97464--97535	29	2.5	29	84	8	85	63	5	12	18	1.47
97564--97632	36	1.9	36	82	11	88	37	7	14	40	1.74
103387--103585	65	3.1	64	79	11	210	30	23	19	26	1.98
103429--103608	65	2.8	63	81	9	168	28	23	19	27	1.98
114317--114348	16	2.0	16	100	0	64	25	6	25	43	1.77

Tables:   1

The End!