Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008475.1 Hibiscus syriacus cultivar Beakdansim tig00111303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 982705
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
File 4 of 4
Found at i:837270 original size:35 final size:34
Alignment explanation
Indices: 837180--837275 Score: 111
Period size: 35 Copynumber: 2.7 Consensus size: 34
837170 AACACAATCA
* * *
837180 TCAATTACATTCTAAACCCCAAATTTCAAAATACT
1 TCAATTACA-TCTTAACCTCAAATTCCAAAATACT
* *
837215 TCAATTATATTTTAAACCTCAAATTCCAAAATACT
1 TCAATTACATCTT-AACCTCAAATTCCAAAATACT
*
837250 TCAATTACATACTTAGCCTCAAATTC
1 TCAATTACAT-CTTAACCTCAAATTC
837276 ATAATCCATT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
34 2 0.04
35 47 0.92
36 2 0.04
ACGTcount: A:0.41, C:0.24, G:0.01, T:0.34
Consensus pattern (34 bp):
TCAATTACATCTTAACCTCAAATTCCAAAATACT
Found at i:845222 original size:8 final size:8
Alignment explanation
Indices: 845211--845243 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
845201 AATAGGTAAA
845211 TTGATTTT
1 TTGATTTT
845219 TTGATTTT
1 TTGATTTT
845227 TTGATTTT
1 TTGATTTT
845235 TTGATTTT
1 TTGATTTT
845243 T
1 T
845244 CAATTATTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (8 bp):
TTGATTTT
Found at i:865681 original size:22 final size:22
Alignment explanation
Indices: 865656--865710 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
865646 ACAGGACTTA
* *
865656 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* * *
865678 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTC
*
865700 CGGGAGTTATA
1 CAGGAGTTATA
865711 ACAGCTGAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:874008 original size:21 final size:21
Alignment explanation
Indices: 873982--874063 Score: 76
Period size: 20 Copynumber: 3.9 Consensus size: 21
873972 ACAGAACCCC
* *
873982 AGGGGGTATCGATTCCCTTGT
1 AGGGGGAATCGATTCCCTTAT
* *
874003 AGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGAATCGATT-CCCTT-AT
* *
874026 AGGGGGAATCGGTTCCCTCAT
1 AGGGGGAATCGATTCCCTTAT
*
874047 -GGGGGGATCGATTCCCT
1 AGGGGGAATCGATTCCCT
874064 CTGCACCAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
20 15 0.29
21 13 0.25
22 9 0.18
23 14 0.27
ACGTcount: A:0.17, C:0.23, G:0.34, T:0.26
Consensus pattern (21 bp):
AGGGGGAATCGATTCCCTTAT
Found at i:877913 original size:22 final size:21
Alignment explanation
Indices: 877871--877910 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
877861 GAGTTTGTTT
*
877871 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
877892 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
877911 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:881187 original size:22 final size:22
Alignment explanation
Indices: 881162--881216 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
881152 TCAGGACTTA
* *
881162 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* * *
881184 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTC
*
881206 CATGAGTTATA
1 CAGGAGTTATA
881217 ACAGCTAAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:881859 original size:18 final size:18
Alignment explanation
Indices: 881836--881875 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
881826 TGTTGCTCAA
881836 GCCACCACCTACCATGCC
1 GCCACCACCTACCATGCC
881854 GCCACCACCTACCATGCC
1 GCCACCACCTACCATGCC
881872 GCCA
1 GCCA
881876 ACCCCAGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.55, G:0.12, T:0.10
Consensus pattern (18 bp):
GCCACCACCTACCATGCC
Found at i:887095 original size:22 final size:22
Alignment explanation
Indices: 887070--887124 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
887060 TCAGGACTTA
* *
887070 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* *
887092 CAGGGGTTACATGATATAATTC
1 CAGGAGTTATATGATATAATTC
887114 C-GGAAGTTATA
1 CAGG-AGTTATA
887125 ACAGCTGAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 2 0.08
22 24 0.92
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:891411 original size:22 final size:22
Alignment explanation
Indices: 891384--891437 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
891374 TATATAAAAA
*
891384 AAATTAGATTCAGGT-AAAAATT
1 AAATTAAATT-AGGTAAAAAATT
**
891406 AAATTAAATTTTGTAAAAAATT
1 AAATTAAATTAGGTAAAAAATT
891428 AAATTAAATT
1 AAATTAAATT
891438 TGAATTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (22 bp):
AAATTAAATTAGGTAAAAAATT
Found at i:892856 original size:85 final size:84
Alignment explanation
Indices: 892704--892869 Score: 235
Period size: 85 Copynumber: 2.0 Consensus size: 84
892694 TATATTTTTA
* * * * * *
892704 TTTATGTCACATGTTTCATTTATCAGATAAAAACTGATTGTCTTTTTCGTCTTTGTCTTATCTTT
1 TTTATGTCAAATGTTTCATTTATCAGAAAAAAACTAATTGTCTTTTTAGTCTTTGTCTCATCCTT
892769 GTTAACACAAGAATGTTTG
66 GTTAACACAAGAATGTTTG
* *
892788 TTTATGTCAAATGTTTCATTTATC-GAACAAAAAATTAATTGTCTTTTTATTCTTTGTCTCATCC
1 TTTATGTCAAATGTTTCATTTATCAG-A-AAAAAACTAATTGTCTTTTTAGTCTTTGTCTCATCC
892852 TTGTTAACACAAGAATGT
64 TTGTTAACACAAGAATGT
892870 GCACAGAGGA
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
83 1 0.01
84 24 0.33
85 47 0.65
ACGTcount: A:0.28, C:0.14, G:0.11, T:0.46
Consensus pattern (84 bp):
TTTATGTCAAATGTTTCATTTATCAGAAAAAAACTAATTGTCTTTTTAGTCTTTGTCTCATCCTT
GTTAACACAAGAATGTTTG
Found at i:892967 original size:21 final size:21
Alignment explanation
Indices: 892917--892971 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
892907 AATTGAAAAA
* *
892917 AATATTTTAAATATTATTATT
1 AATATTTTTATTATTATTATT
*
892938 AGTATTTTTATTATTATTATT
1 AATATTTTTATTATTATTATT
892959 AATATTTTT-TTAT
1 AATATTTTTATTAT
892972 CAAATATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
AATATTTTTATTATTATTATT
Found at i:893052 original size:33 final size:33
Alignment explanation
Indices: 892988--893052 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
892978 TTATTTAACC
* **
892988 TAAAAACTAACTACCTATTAAATAATCATCCAT
1 TAAAAACCAACTACCTATTAAATAAAAATCCAT
*
893021 TAAAAACCCACTACCTATTAAATAAAAATCCA
1 TAAAAACCAACTACCTATTAAATAAAAATCCA
893053 CTAACTATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (33 bp):
TAAAAACCAACTACCTATTAAATAAAAATCCAT
Found at i:893053 original size:22 final size:22
Alignment explanation
Indices: 893021--893064 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
893011 AATCATCCAT
*
893021 TAAAAACCCACTACCTATTAAA
1 TAAAAACCCACTAACTATTAAA
*
893043 TAAAAATCCACTAACTATTAAA
1 TAAAAACCCACTAACTATTAAA
893065 CAAATAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.25
Consensus pattern (22 bp):
TAAAAACCCACTAACTATTAAA
Found at i:893361 original size:18 final size:18
Alignment explanation
Indices: 893315--893380 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
893305 ATTTTACTAG
*
893315 ATAATTATTTAATAGGTA
1 ATAAGTATTTAATAGGTA
*
893333 GTAAGTATTTAATAGGTA
1 ATAAGTATTTAATAGGTA
*
893351 ATGAGT-TTT--TAGGTA
1 ATAAGTATTTAATAGGTA
893366 ATGTAA-TATTTAATA
1 A--TAAGTATTTAATA
893381 AAAAAATATT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
15 7 0.18
16 1 0.03
17 8 0.21
18 20 0.53
19 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (18 bp):
ATAAGTATTTAATAGGTA
Found at i:893415 original size:16 final size:16
Alignment explanation
Indices: 893391--893422 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
893381 AAAAAATATT
*
893391 AATATTAATAATAATA
1 AATACTAATAATAATA
893407 AATACTAATAATAATA
1 AATACTAATAATAATA
893423 TTTAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (16 bp):
AATACTAATAATAATA
Found at i:896503 original size:29 final size:29
Alignment explanation
Indices: 896461--896595 Score: 182
Period size: 29 Copynumber: 4.7 Consensus size: 29
896451 GTTAACCAAA
*
896461 TAATTACGAAAATAACACACT-TTTCTAAT
1 TAATTACTAAAATAACAC-CTATTTCTAAT
* *
896490 TAATTACTAAAATAGCACCTTTTTCTAAT
1 TAATTACTAAAATAACACCTATTTCTAAT
* * *
896519 TAATTACTAAAATAGCACATATTTCAAAT
1 TAATTACTAAAATAACACCTATTTCTAAT
*
896548 TAATTACTAAAATAACACCTATTTCGAAT
1 TAATTACTAAAATAACACCTATTTCTAAT
*
896577 TAATTACTAAAATAGCACC
1 TAATTACTAAAATAACACC
896596 CTGTCAACGG
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 2 0.02
29 94 0.98
ACGTcount: A:0.44, C:0.17, G:0.04, T:0.35
Consensus pattern (29 bp):
TAATTACTAAAATAACACCTATTTCTAAT
Found at i:897986 original size:23 final size:23
Alignment explanation
Indices: 897960--898006 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
897950 AAGGGGTGGA
897960 GAGAGGGAAAGAAAAAACAACTT
1 GAGAGGGAAAGAAAAAACAACTT
897983 GAGAGGGAAAGAAAAAACAACTT
1 GAGAGGGAAAGAAAAAACAACTT
898006 G
1 G
898007 TTGGTCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.28, T:0.09
Consensus pattern (23 bp):
GAGAGGGAAAGAAAAAACAACTT
Found at i:905985 original size:22 final size:22
Alignment explanation
Indices: 905958--906013 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
905948 TTATCAGTTA
905958 TCAAGTAGCCAAGAGAACTCAC
1 TCAAGTAGCCAAGAGAACTCAC
905980 TCAAGTAGCCAAGAGAACTCAC
1 TCAAGTAGCCAAGAGAACTCAC
906002 TCAAGTAGCCAA
1 TCAAGTAGCCAA
906014 TTGTTTAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.41, C:0.27, G:0.18, T:0.14
Consensus pattern (22 bp):
TCAAGTAGCCAAGAGAACTCAC
Found at i:906842 original size:29 final size:29
Alignment explanation
Indices: 906800--906866 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 29
906790 TTTAAATCAG
906800 TCCTCAAACTTTTGAACA-TTTCATTTTCA
1 TCCTCAAACTTTTGAACATTTTCA-TTTCA
*
906829 TCCTCAAACTTTTGAACATTTTGATTTCA
1 TCCTCAAACTTTTGAACATTTTCATTTCA
906858 TCC-CAAACT
1 TCCTCAAACT
906867 ATTAATATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
28 6 0.17
29 26 0.72
30 4 0.11
ACGTcount: A:0.28, C:0.25, G:0.04, T:0.42
Consensus pattern (29 bp):
TCCTCAAACTTTTGAACATTTTCATTTCA
Found at i:912811 original size:13 final size:14
Alignment explanation
Indices: 912793--912823 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
912783 GGTCAAAGGA
912793 GGTCAACGATC-AC
1 GGTCAACGATCAAC
912806 GGTCAACGATCAAC
1 GGTCAACGATCAAC
912820 GGTC
1 GGTC
912824 GGGTCGGGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.16
Consensus pattern (14 bp):
GGTCAACGATCAAC
Found at i:920054 original size:7 final size:7
Alignment explanation
Indices: 920024--920081 Score: 84
Period size: 7 Copynumber: 8.6 Consensus size: 7
920014 GGTCAAAGGA
920024 GGTCAAC
1 GGTCAAC
920031 GGTC-AC
1 GGTCAAC
*
920037 AGTC-AC
1 GGTCAAC
920043 GGTCAAC
1 GGTCAAC
*
920050 AGTCAAC
1 GGTCAAC
920057 GGTCAAC
1 GGTCAAC
920064 GGTCAAC
1 GGTCAAC
920071 GGTCAAC
1 GGTCAAC
920078 GGTC
1 GGTC
920082 GGGTCGGGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
6 10 0.22
7 36 0.78
ACGTcount: A:0.28, C:0.29, G:0.28, T:0.16
Consensus pattern (7 bp):
GGTCAAC
Found at i:921280 original size:18 final size:18
Alignment explanation
Indices: 921257--921310 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
921247 GAGGGATTAT
*
921257 CAGTGGTCCTTCGAGACA
1 CAGTGGTCCTACGAGACA
*
921275 CAGTGGTCCTACGGGACA
1 CAGTGGTCCTACGAGACA
* *
921293 CAGTGGTCTTACGGGACA
1 CAGTGGTCCTACGAGACA
921311 AATTTCTACG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.20
Consensus pattern (18 bp):
CAGTGGTCCTACGAGACA
Found at i:922846 original size:23 final size:23
Alignment explanation
Indices: 922820--922888 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
922810 CACCACAGCT
*
922820 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
* * *
922843 CGTAGAATTGCACCGGAGTACCG
1 CGTAGAATTGCACCGAAGTGCCA
* *
922866 CATAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
922889 TATAATAATG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.20
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:923837 original size:2 final size:2
Alignment explanation
Indices: 923830--923871 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
923820 ATATCTCCTA
923830 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
923872 CTATTAATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:926648 original size:28 final size:29
Alignment explanation
Indices: 926593--926648 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
926583 TATAACTCAT
* *
926593 ATTTTAAATTAGTCTTGAAATTCTTGAAC
1 ATTTTAAATTAGTCTTCAAACTCTTGAAC
* *
926622 ATTTTAATTTATTCTTCAAACT-TTGAA
1 ATTTTAAATTAGTCTTCAAACTCTTGAA
926649 TTTCATTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (29 bp):
ATTTTAAATTAGTCTTCAAACTCTTGAAC
Found at i:927227 original size:2 final size:2
Alignment explanation
Indices: 927220--927258 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
927210 TTGGGTAAAT
927220 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
927259 TTACGTAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:932386 original size:76 final size:75
Alignment explanation
Indices: 932305--932452 Score: 235
Period size: 76 Copynumber: 2.0 Consensus size: 75
932295 TAAACTCAAA
932305 TTTAGGATAATATTTTAAACATTATAT-TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTA
1 TTTAGGATAATATTTT-AACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGTA
932369 TTTTAATTAAGT
64 TTTTAATTAAGT
* * * *
932381 TTTAGGATATTATTTTTATATTTTATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTATT
1 TTTAGGATAATATTTTAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTATT
932446 TTAATTA
66 TTAATTA
932453 GGATTTATAA
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
75 24 0.36
76 43 0.64
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.58
Consensus pattern (75 bp):
TTTAGGATAATATTTTAACATTATATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTATT
TTAATTAAGT
Found at i:932531 original size:65 final size:65
Alignment explanation
Indices: 932417--932552 Score: 190
Period size: 65 Copynumber: 2.1 Consensus size: 65
932407 CTTTATCTTT
*
932417 GTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAGGATTTATAATATTATA-TTATTTTTTTA
1 GTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAGGATTTATAATATTATAGTT-TGTTTTTA
932481 G
65 G
* *
932482 GTATTTTAGTTTAAATA-GTTTTAAGTGTTTTAATTAGGATTTA-AGATATTTTAGTTTGTTTTT
1 GTATTTTAGTTTAAATAGGTTTT-AGTATTTTAATTAGGATTTATA-ATATTATAGTTTGTTTTT
932545 AG
64 AG
932547 G-ATTTT
1 GTATTTT
932553 GAAGGTTATA
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
64 11 0.17
65 52 0.80
66 2 0.03
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.57
Consensus pattern (65 bp):
GTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAGGATTTATAATATTATAGTTTGTTTTTAG
Found at i:933133 original size:23 final size:23
Alignment explanation
Indices: 933107--933150 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
933097 CTTTAATTTG
933107 TTTATTTAATTATTATTTTTTCT
1 TTTATTTAATTATTATTTTTTCT
*
933130 TTTATTTAATTCTTATTTTTT
1 TTTATTTAATTATTATTTTTT
933151 TATTTTAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTATTTAATTATTATTTTTTCT
Found at i:933854 original size:25 final size:25
Alignment explanation
Indices: 933826--933880 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
933816 TGTTGGAATT
933826 CCACATGGTTTGCACTAGCATGAAA
1 CCACATGGTTTGCACTAGCATGAAA
933851 CCACATGGTTTGCACTAGCATGAAA
1 CCACATGGTTTGCACTAGCATGAAA
933876 CCACA
1 CCACA
933881 AGGAGTCACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (25 bp):
CCACATGGTTTGCACTAGCATGAAA
Found at i:938846 original size:8 final size:8
Alignment explanation
Indices: 938818--938875 Score: 57
Period size: 8 Copynumber: 7.1 Consensus size: 8
938808 GAGGCAATTC
*
938818 ATTTTGTT
1 ATTTTTTT
*
938826 ATATTTTT
1 ATTTTTTT
938834 A--TTTTT
1 ATTTTTTT
938840 ATTTTTTT
1 ATTTTTTT
938848 ATTTTCATTTT
1 A-TTT--TTTT
938859 ATTTTTTT
1 ATTTTTTT
938867 ATTTTTTT
1 ATTTTTTT
938875 A
1 A
938876 GCGAACTTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
6 6 0.14
8 26 0.60
9 3 0.07
10 3 0.07
11 5 0.12
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (8 bp):
ATTTTTTT
Found at i:938846 original size:14 final size:14
Alignment explanation
Indices: 938824--938875 Score: 70
Period size: 14 Copynumber: 3.8 Consensus size: 14
938814 ATTCATTTTG
*
938824 TTATATTTTTATTT
1 TTATTTTTTTATTT
938838 TTATTTTTTTATTT
1 TTATTTTTTTATTT
* *
938852 TCATTTTATT-TTT
1 TTATTTTTTTATTT
938865 TTATTTTTTTA
1 TTATTTTTTTA
938876 GCGAACTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
13 11 0.34
14 21 0.66
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (14 bp):
TTATTTTTTTATTT
Found at i:938906 original size:5 final size:5
Alignment explanation
Indices: 938882--938928 Score: 51
Period size: 5 Copynumber: 9.6 Consensus size: 5
938872 TTTAGCGAAC
* * * *
938882 TTTAT TTCAT TCTA- TTTAT TTTAT TTTAT TTTAA TTAAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
938929 TTCTAAATAG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
4 3 0.09
5 30 0.91
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.72
Consensus pattern (5 bp):
TTTAT
Found at i:939116 original size:15 final size:16
Alignment explanation
Indices: 939088--939118 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
939078 TCAAACAATG
939088 CAGTGCAGGAAAAAAA
1 CAGTGCAGGAAAAAAA
939104 CAGTGCA-GAAAAAAA
1 CAGTGCAGGAAAAAAA
939119 TAGATTTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.13, G:0.23, T:0.06
Consensus pattern (16 bp):
CAGTGCAGGAAAAAAA
Found at i:941242 original size:72 final size:72
Alignment explanation
Indices: 941164--941302 Score: 192
Period size: 72 Copynumber: 1.9 Consensus size: 72
941154 TAAACTCAAA
*
941164 TTTAGGATAATATTTTAAACATTAT-TTTATCTTTGTAGTTTAGTTTAAAT-GTTTTTAGTATTT
1 TTTAGGATAATATTTT-AACATTATCTTTATCTTTGTAGTTTAGTTTAAATAG-GTTTAGTATTT
941227 TAATTAAGT
64 TAATTAAGT
* * * * *
941236 TTTAGGATATTATTTTTATATTTTCTTTATCTTTGTATTTTAGTTTAAATAGGTTTAGTATTTTA
1 TTTAGGATAATATTTTAACATTATCTTTATCTTTGTAGTTTAGTTTAAATAGGTTTAGTATTTTA
941301 AT
66 AT
941303 AGGATCTAGA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
71 5 0.08
72 53 0.90
73 1 0.02
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.58
Consensus pattern (72 bp):
TTTAGGATAATATTTTAACATTATCTTTATCTTTGTAGTTTAGTTTAAATAGGTTTAGTATTTTA
ATTAAGT
Found at i:953250 original size:20 final size:20
Alignment explanation
Indices: 953156--953524 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
953146 GATTTTCCAT
* ** *
953156 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
953176 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
953196 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
953216 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
953236 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
953256 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
953276 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
953296 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
953316 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
953336 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
953356 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
953376 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
953396 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
953416 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
953436 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
953456 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
953476 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
953496 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
953516 AATCACAAC
1 AATCGCAAC
953525 ACTGAAATTT
Statistics
Matches: 305, Mismatches: 36, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
19 3 0.01
20 299 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:954222 original size:24 final size:24
Alignment explanation
Indices: 954194--954239 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
954184 AAATTTGGTC
954194 TGGTCAATATC-CGGACTTTGATAT
1 TGGTCAATA-CACGGACTTTGATAT
*
954218 TGGTCAATACACGGATTTTGAT
1 TGGTCAATACACGGACTTTGAT
954240 GATGTTTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (24 bp):
TGGTCAATACACGGACTTTGATAT
Found at i:954430 original size:12 final size:12
Alignment explanation
Indices: 954413--954437 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
954403 CATATAATCT
954413 GAAGAAGAAAAA
1 GAAGAAGAAAAA
954425 GAAGAAGAAAAA
1 GAAGAAGAAAAA
954437 G
1 G
954438 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:956745 original size:19 final size:19
Alignment explanation
Indices: 956723--957048 Score: 398
Period size: 19 Copynumber: 18.4 Consensus size: 19
956713 CGGAAAATAC
*
956723 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
956742 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
956756 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
956776 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
956790 AATCGCAATGCGAAATGAAA
1 AATCGCAATGCGAAATG-AA
956810 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
956829 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
956843 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
956862 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
956881 AATCGCAA--CG--A-G-A
1 AATCGCAATGCGAAATGAA
956894 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
956913 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
956932 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
956951 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
956970 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
956989 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
957003 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
957022 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
957041 AATCGCAA
1 AATCGCAA
957049 CGAGATGATC
Statistics
Matches: 269, Mismatches: 10, Indels: 56
0.80 0.03 0.17
Matches are distributed among these distances:
13 9 0.03
14 41 0.15
15 5 0.02
16 11 0.04
17 13 0.05
18 4 0.01
19 155 0.58
20 31 0.12
ACGTcount: A:0.48, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:956896 original size:38 final size:38
Alignment explanation
Indices: 956723--957070 Score: 398
Period size: 33 Copynumber: 9.9 Consensus size: 38
956713 CGGAAAATAC
* *
956723 AATCGCAACGCGAAATGAAAATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
956756 AATCGCAATGCGGAAATGAAAATCGCAA--CG--A-GAG
1 AATCGCAATGC-GAAATGAAAATCGCAATGCGAAATGAA
956790 AATCGCAATGCGAAATGAAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATG-AAAATCGCAATGCGAAATGAA
*
956829 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
956862 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-G-A
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
956894 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
956932 AATCGCAATACGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
956970 AATCGCAATGCGAAATGAAAATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
957003 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
957041 AATCGCAA--CGAGATG---ATCGCAATGCGAAAT
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAAT
957071 TATAAACGCA
Statistics
Matches: 280, Mismatches: 11, Indels: 48
0.83 0.03 0.14
Matches are distributed among these distances:
32 28 0.10
33 87 0.31
34 43 0.15
35 10 0.04
36 17 0.06
37 3 0.01
38 82 0.29
39 10 0.04
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (38 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:956988 original size:160 final size:158
Alignment explanation
Indices: 956751--957070 Score: 538
Period size: 160 Copynumber: 2.0 Consensus size: 158
956741 AAATCCCAAC
*
956751 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAAATCGC
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAAATCGC
*
956816 AATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
66 AATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
956881 AATCGCAACGAGA-AATCGCAATGCGAA
131 AATCGCAACGAGATAATCGCAATGCGAA
*
956908 ATGAAAATCGCAATGC-GAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAAATG-AAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGC-A-ACG--A-GAAAATCGCAATGCGAAATGAAAA
956971 ATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
61 ATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
*
957036 ATGAAAATCGCAACGAGATGATCGCAATGCGAA
126 ATGAAAATCGCAACGAGATAATCGCAATGCGAA
957069 AT
1 AT
957071 TATAAACGCA
Statistics
Matches: 153, Mismatches: 4, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
156 13 0.08
157 17 0.11
158 3 0.02
160 86 0.56
161 34 0.22
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (158 bp):
ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAAATCGC
AATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
AATCGCAACGAGATAATCGCAATGCGAA
Found at i:957086 original size:52 final size:52
Alignment explanation
Indices: 956751--957070 Score: 527
Period size: 52 Copynumber: 6.0 Consensus size: 52
956741 AAATCCCAAC
956751 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
956804 ATGAAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATG-AAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
956857 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGA-AATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
956908 ATGAAAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
*
956965 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
957017 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATG-ATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGA-GAATCGCAATGCGAA
957069 AT
1 AT
957071 TATAAACGCA
Statistics
Matches: 254, Mismatches: 5, Indels: 17
0.92 0.02 0.06
Matches are distributed among these distances:
51 43 0.17
52 101 0.40
53 47 0.19
54 13 0.05
55 4 0.02
56 3 0.01
57 43 0.17
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:957186 original size:19 final size:19
Alignment explanation
Indices: 957077--957178 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
957067 AAATTATAAA
957077 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
957096 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
957116 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
957132 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
957149 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
957168 CGCATTGCGAT
1 CGCATTGCGAT
957179 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:957304 original size:14 final size:14
Alignment explanation
Indices: 957285--957321 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
957275 CATCAATTAC
957285 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
957299 ACAAATCATCTTTT
1 ACAAATCAACTTTT
957313 ACAAATCAA
1 ACAAATCAA
957322 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:957333 original size:12 final size:12
Alignment explanation
Indices: 957316--957387 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 12
957306 ATCTTTTACA
957316 AATCAATTAAAC
1 AATCAATTAAAC
*
957328 AATCAA--AAATTG
1 AATCAATTAAA--C
*
957340 AATCAACTT-TAC
1 AATCAA-TTAAAC
957352 AAATCAATTAAAC
1 A-ATCAATTAAAC
*
957365 AATCAA-AAAAC
1 AATCAATTAAAC
957376 AATCAATTAAAC
1 AATCAATTAAAC
957388 TATTGAATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 16
0.68 0.09 0.24
Matches are distributed among these distances:
10 3 0.07
11 10 0.22
12 24 0.52
13 8 0.17
14 1 0.02
ACGTcount: A:0.58, C:0.17, G:0.01, T:0.24
Consensus pattern (12 bp):
AATCAATTAAAC
Found at i:959250 original size:14 final size:14
Alignment explanation
Indices: 959231--959287 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
959221 GCGAAATGAA
*
959231 AATCGCAACGACAG
1 AATCGCAACGAAAG
959245 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
959262 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
959278 AATCGCAACG
1 AATCGCAACG
959288 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:959258 original size:33 final size:33
Alignment explanation
Indices: 959212--959303 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
959202 GCGAAACCAA
*
959212 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
959245 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
959278 AATCGCAACGCGAAATG-AAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
959304 TGCGATTTGG
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 9 0.16
33 47 0.84
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:959269 original size:19 final size:19
Alignment explanation
Indices: 959175--959308 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
959165 TAGTTTACTT
* *
959175 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
959195 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
959214 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
959233 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
959247 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
959266 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
959280 TCGCAACGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
*
959298 TCGCAATGCGA
1 TCGCAACGCGA
959309 TTTGGTTTCG
Statistics
Matches: 97, Mismatches: 8, Indels: 20
0.78 0.06 0.16
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
18 12 0.12
19 35 0.36
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:959349 original size:33 final size:32
Alignment explanation
Indices: 959304--959393 Score: 137
Period size: 33 Copynumber: 2.8 Consensus size: 32
959294 GAAATCGCAA
959304 TGCGA-TTTGGTTTCGCGTTGCGATCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATCTT-TCGT
959336 TGCGATTTTGGTTTCGCGTTGCGATTCTTTCGT
1 TGCGATTTTGGTTTCGCGTTGCGA-TCTTTCGT
**
959369 TGCGATTTTCATTTCGCGTTGCGAT
1 TGCGATTTTGGTTTCGCGTTGCGAT
959394 TTGGTTTCGC
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
32 6 0.11
33 44 0.81
34 4 0.07
ACGTcount: A:0.08, C:0.19, G:0.28, T:0.46
Consensus pattern (32 bp):
TGCGATTTTGGTTTCGCGTTGCGATCTTTCGT
Found at i:959357 original size:19 final size:19
Alignment explanation
Indices: 959304--959429 Score: 105
Period size: 19 Copynumber: 7.3 Consensus size: 19
959294 GAAATCGCAA
959304 TGCGA-TTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
959322 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
959336 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
959355 TGCGA--TT-CTTT--CGT
1 TGCGATTTTGGTTTCGCGT
**
959369 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
959388 TGCGA-TTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
** *
959406 TGCGATTTAAGTTTCGTGT
1 TGCGATTTTGGTTTCGCGT
959425 TGCGA
1 TGCGA
959430 AAGTAAACTA
Statistics
Matches: 87, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
14 19 0.22
15 1 0.01
16 6 0.07
17 6 0.07
18 22 0.25
19 33 0.38
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.45
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:959632 original size:93 final size:93
Alignment explanation
Indices: 959473--959848 Score: 708
Period size: 93 Copynumber: 4.1 Consensus size: 93
959463 TTGAATGGAT
959473 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
959538 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
959566 AAATTTACTTTCAAGCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
959631 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
959659 AAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AA-A-TATTTCACAGTGTTAAAGAAT--AC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
959719 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
959747 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
959812 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
959840 AAATTTACT
1 AAATTTACT
959849 AAGCAATCTA
Statistics
Matches: 276, Mismatches: 2, Indels: 10
0.96 0.01 0.03
Matches are distributed among these distances:
88 64 0.23
89 2 0.01
90 22 0.08
91 22 0.08
92 2 0.01
93 164 0.59
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:959782 original size:181 final size:185
Alignment explanation
Indices: 959473--959848 Score: 706
Period size: 181 Copynumber: 2.0 Consensus size: 185
959463 TTGAATGGAT
959473 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATA-AC
*
959538 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAAGCAAAAGACAAAACAAAGACAAA
65 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
959603 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
130 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
959659 AAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AA-A-TATTTCACAGTGTTAAAGAAT-ACA
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATAACA
959720 GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
66 GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
959785 ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
959840 AAATTTACT
1 AAATTTACT
959849 AAGCAATCTA
Statistics
Matches: 189, Mismatches: 1, Indels: 5
0.97 0.01 0.03
Matches are distributed among these distances:
181 131 0.69
183 21 0.11
184 1 0.01
185 2 0.01
186 34 0.18
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (185 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATAACA
GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:961562 original size:14 final size:14
Alignment explanation
Indices: 961543--961632 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
961533 TTGAAATGAA
961543 AATCGCAACGAGAG
1 AATCGCAACGAGAG
961557 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
961574 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
961590 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
961609 AATCGCAACGAGAG
1 AATCGCAACGAGAG
961623 AATCGCAACG
1 AATCGCAACG
961633 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:961580 original size:33 final size:33
Alignment explanation
Indices: 961535--961649 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
961525 TCTTTTGGTT
961535 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
961568 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
961601 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
961634 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
961650 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:961581 original size:19 final size:18
Alignment explanation
Indices: 961542--961654 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
961532 GTTGAAATGA
961542 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
961557 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
961574 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
961590 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
961607 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
961623 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
961640 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
961655 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:961881 original size:33 final size:33
Alignment explanation
Indices: 961839--961909 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
961829 AATACTAACT
*
961839 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
961872 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
961905 TGAAA
1 TGAAA
961910 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:962142 original size:22 final size:22
Alignment explanation
Indices: 962090--962144 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
962080 TGGTTGTGAG
**
962090 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
962112 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
962134 GGATTTCTTCG
1 GGATTTCTTCG
962145 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:962311 original size:20 final size:20
Alignment explanation
Indices: 962286--962479 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
962276 CTTTAAATAT
962286 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
962306 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
962328 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
962347 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
962367 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
962387 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
962407 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
962427 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
962447 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
962467 CGCGTTGCGATTT
1 CGCGTTGCGATTT
962480 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:962473 original size:60 final size:60
Alignment explanation
Indices: 962286--962479 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
962276 CTTTAAATAT
**
962286 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
962347 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
962407 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
962467 CGCGTTGCGATTT
1 CGCGTTGCGATTT
962480 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:962496 original size:21 final size:20
Alignment explanation
Indices: 962472--962548 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
962462 ATATTCGCGT
962472 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
962493 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
962513 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
962535 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
962549 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:962559 original size:20 final size:20
Alignment explanation
Indices: 962534--962585 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
962524 AAGAATCGCG
*
962534 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
962554 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
962574 TTGCGATTCTGG
1 TTGCGATTCTGG
962586 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:968867 original size:23 final size:22
Alignment explanation
Indices: 968830--968887 Score: 80
Period size: 23 Copynumber: 2.6 Consensus size: 22
968820 TAAAAACTGA
*
968830 AAAACGTGTCAAAAGATAGAAG
1 AAAACGTGTCAAAAGACAGAAG
*
968852 AAAACGTGTCATAAAGACAGATG
1 AAAACGTGTCA-AAAGACAGAAG
*
968875 AAAATGTGTCAAA
1 AAAACGTGTCAAA
968888 CATATAGACT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 13 0.41
23 19 0.59
ACGTcount: A:0.52, C:0.10, G:0.21, T:0.17
Consensus pattern (22 bp):
AAAACGTGTCAAAAGACAGAAG
Found at i:970207 original size:2 final size:2
Alignment explanation
Indices: 970160--970194 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
970150 ACACGAAAAT
970160 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
970195 TGTGAAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:980043 original size:20 final size:22
Alignment explanation
Indices: 980005--980046 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
979995 AATAAAAGAA
980005 AAATAGAATAAAGAATAAAATG
1 AAATAGAATAAAGAATAAAATG
980027 AAATA-AATAAA-AATAAAATG
1 AAATAGAATAAAGAATAAAATG
980047 CAACAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
21 6 0.30
22 5 0.25
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (22 bp):
AAATAGAATAAAGAATAAAATG
Found at i:980159 original size:12 final size:12
Alignment explanation
Indices: 980142--980202 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 12
980132 ATATTATACG
980142 TTTTTAAAAATA
1 TTTTTAAAAATA
980154 TTTTTAAAAATA
1 TTTTTAAAAATA
* * * *
980166 -TATTATATATG
1 TTTTTAAAAATA
*
980177 TTTTTAAAAATG
1 TTTTTAAAAATA
* *
980189 TTTTCAAAACTA
1 TTTTTAAAAATA
980201 TT
1 TT
980203 ATATTTCATT
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
11 7 0.18
12 31 0.82
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (12 bp):
TTTTTAAAAATA
Found at i:980185 original size:35 final size:34
Alignment explanation
Indices: 980120--980201 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 34
980110 CAAAAATCGC
980120 TTTTTAAAAACTATATTATACGTTTTTAAAAATA
1 TTTTTAAAAACTATATTATACGTTTTTAAAAATA
*
980154 TTTTTAAAAA-TATATTATATATGTTTTTAAAAAT-
1 TTTTTAAAAACTATA-T-TATACGTTTTTAAAAATA
* *
980188 GTTTTCAAAACTAT
1 TTTTTAAAAACTAT
980202 TATATTTCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
33 4 0.10
34 19 0.45
35 19 0.45
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.49
Consensus pattern (34 bp):
TTTTTAAAAACTATATTATACGTTTTTAAAAATA
Found at i:980203 original size:33 final size:34
Alignment explanation
Indices: 980121--980206 Score: 104
Period size: 35 Copynumber: 2.5 Consensus size: 34
980111 AAAAATCGCT
* *
980121 TTTTAAAAACTA-TATTATACGTTTTTAAAAATAT
1 TTTTAAAAACTATTA-TATATGTTTTTAAAAATAG
*
980155 TTTTAAAAATATATTATATATGTTTTTAAAAAT-G
1 TTTTAAAAA-CTATTATATATGTTTTTAAAAATAG
*
980189 TTTTCAAAACTATTATAT
1 TTTTAAAAACTATTATAT
980207 TTCATTATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
33 8 0.18
34 17 0.38
35 18 0.40
36 2 0.04
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (34 bp):
TTTTAAAAACTATTATATATGTTTTTAAAAATAG
Done.