genome.fa.s8476.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008476.1 Hibiscus syriacus cultivar Beakdansim tig00111305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170783

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944--1000	14	3.7	14	77	20	60	45	22	21	10	1.82
925--1017	33	2.8	33	95	0	168	47	21	20	10	1.80
888--1022	19	7.6	19	76	16	128	45	23	19	11	1.82
1018--1142	19	7.3	19	72	21	89	8	17	28	44	1.79
1018--1105	31	2.8	33	88	8	130	7	19	28	44	1.78
1186--1557	180	2.0	181	95	3	669	46	18	13	22	1.83
1186--1557	92	4.1	91	94	4	671	46	18	13	22	1.83
3245--3334	14	5.7	14	74	23	81	42	23	25	8	1.83
3237--3351	33	3.5	33	95	0	212	45	20	24	9	1.81
3244--3356	19	6.8	18	72	23	88	43	22	24	9	1.83
3541--3611	33	2.2	33	92	0	115	47	18	22	11	1.80
3793--3847	22	2.5	22	81	0	74	20	16	40	23	1.91
3991--4182	20	9.6	20	81	7	212	19	19	26	34	1.96
4175--4251	21	3.7	20	70	13	57	27	16	23	32	1.96
4237--4288	20	2.6	20	96	0	95	21	13	26	38	1.90
10560--10617	23	2.6	22	84	10	73	53	10	18	17	1.71
11896--11925	2	15.0	2	100	0	60	50	0	0	50	1.00
22030--22127	38	2.6	38	85	7	130	43	7	4	44	1.50
21973--22097	36	3.5	35	77	14	132	46	7	3	43	1.47
29907--29932	13	2.0	13	100	0	52	30	30	23	15	1.95
35582--35629	20	2.5	20	86	3	62	47	4	14	33	1.63
36928--36968	22	1.9	21	95	5	73	56	9	0	34	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37318--37393	30	2.6	29	80	2	80	59	3	9	27	1.46
38670--38753	3	27.3	3	80	9	71	55	2	0	41	1.12
38707--38753	14	3.3	14	88	11	69	61	0	0	38	0.96
38670--38753	21	4.2	20	77	8	82	55	2	0	41	1.12
38709--38753	23	1.9	24	95	4	83	62	0	0	37	0.96
38943--39659	125	5.6	125	78	9	650	26	18	26	28	1.98
38950--39659	253	2.8	252	79	8	774	26	18	26	28	1.98
39767--39839	37	1.9	37	83	2	92	39	9	16	34	1.81
42095--42147	1	53.0	1	76	0	52	0	11	0	88	0.51
42087--42119	17	1.9	17	93	0	57	3	15	0	81	0.80
42080--42145	19	3.6	18	88	8	89	1	13	0	84	0.68
42080--42147	28	2.5	28	87	2	102	1	13	0	85	0.67
46320--46344	13	1.9	13	100	0	50	44	8	8	40	1.63
48382--48422	22	1.9	21	95	5	73	56	9	0	34	1.32
48964--49032	21	3.3	21	62	22	54	53	15	4	26	1.61
48956--49039	42	2.0	42	100	0	168	52	14	7	26	1.67
50173--50257	3	28.0	3	80	11	75	56	2	0	41	1.12
50204--50255	14	3.9	13	87	12	79	61	0	0	38	0.96
59423--59480	17	3.4	17	72	13	64	60	12	10	17	1.58
59421--59492	35	2.0	36	97	2	137	58	11	12	18	1.63
59426--59483	19	3.2	19	65	30	54	60	10	12	17	1.58
59676--59717	21	2.0	21	90	0	66	26	26	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59830--59955	33	3.5	35	76	11	103	16	27	34	21	1.95
59889--59960	20	3.5	20	90	5	117	12	31	33	22	1.91
61405--61452	19	2.5	20	82	3	62	29	12	6	52	1.63
62666--62707	21	2.0	21	95	0	75	26	28	21	23	1.99
62822--62883	15	3.9	16	76	17	67	22	25	30	20	1.98
62822--62890	32	2.1	33	89	2	104	20	24	33	21	1.97
63749--63890	43	3.3	42	83	2	149	21	21	22	35	1.96
63749--63921	86	2.0	86	81	8	201	23	20	20	35	1.96
66010--66065	28	2.0	28	100	0	112	35	3	17	42	1.67
73257--73365	54	2.0	54	87	0	155	47	11	15	25	1.78
75375--75464	13	6.8	13	71	8	58	76	3	5	14	1.09
75374--75498	9	14.0	9	72	12	71	75	3	5	16	1.12
75374--75476	52	2.0	52	86	3	145	74	2	6	15	1.14
75756--75782	2	13.5	2	100	0	54	51	0	0	48	1.00
76810--76865	18	3.2	17	85	7	67	57	1	0	41	1.09
76810--76865	14	4.2	14	80	8	64	57	1	0	41	1.09
77480--78265	121	6.5	120	81	7	797	25	16	25	32	1.96
77488--78268	240	3.2	240	87	3	1032	25	16	25	32	1.96
78336--78566	64	3.6	63	88	2	336	29	15	21	34	1.94
79353--79550	99	2.0	99	93	0	342	29	17	19	33	1.94
83847--83921	23	3.4	22	83	3	80	30	25	18	25	1.98
83931--84148	103	2.1	103	94	0	382	37	22	13	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84907--84945	19	2.1	19	90	0	60	10	30	33	25	1.89
85913--86119	63	3.2	63	64	18	172	35	7	9	47	1.63
85887--86158	131	2.1	131	97	0	510	39	6	8	45	1.62
93993--94044	13	4.0	13	79	0	59	28	21	17	32	1.96
107305--107359	24	2.5	22	85	8	67	32	23	16	27	1.96
107305--107377	21	3.3	22	74	20	64	32	23	17	26	1.97
110028--110132	45	2.3	45	81	14	119	32	20	13	33	1.92
115734--115776	21	2.0	21	86	0	59	51	4	34	9	1.55
120794--120836	21	2.0	21	95	0	77	51	4	39	4	1.44
122854--122897	23	1.9	23	86	9	63	45	6	4	43	1.51
127813--127894	42	2.0	42	95	0	146	26	28	8	36	1.86
128805--128837	15	2.1	16	88	5	50	51	6	0	42	1.26
131086--131518	83	5.3	82	83	4	487	25	17	24	33	1.96
131086--131518	163	2.6	166	81	1	550	25	17	24	33	1.96
131953--132062	43	2.6	43	88	0	148	20	20	31	27	1.97
132067--132151	33	2.5	34	83	11	104	22	18	23	35	1.96
132173--132303	64	2.0	64	85	2	174	33	9	20	36	1.84
134308--134340	7	4.6	7	96	3	57	0	0	15	84	0.61
138642--138729	39	2.3	39	84	4	124	34	5	28	31	1.81
139193--139451	126	2.1	123	91	3	412	32	18	18	29	1.96
140162--140227	13	4.7	13	74	20	53	75	7	3	13	1.13
144105--144129	13	1.9	13	100	0	50	36	8	16	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163235--163266	2	16.0	2	100	0	64	50	0	0	50	1.00
163903--163939	2	18.5	2	100	0	74	48	0	0	51	1.00
165173--165284	58	1.9	58	83	8	147	31	25	4	39	1.75

Tables:   1

The End!