Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000848.1 Hibiscus syriacus cultivar Beakdansim tig00001635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114727

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8076--8460
181
2.1
183
91
2
625
43
2
7
46
1.46
9917--10361
134
3.3
133
83
5
529
28
15
22
33
1.95
11582--11693
13
7.9
13
69
19
64
10
8
0
80
0.91
11575--11683
19
5.2
20
77
15
98
11
9
0
78
0.95
11575--11701
7
16.6
7
70
23
53
11
9
0
79
0.94
11582--11631
25
2.1
25
88
7
77
4
10
0
86
0.71
11592--11700
6
17.7
6
75
15
57
11
8
0
79
0.92
11592--11707
31
3.7
30
69
21
87
12
8
0
79
0.94
14225--14267
21
2.0
21
82
8
52
34
0
0
65
0.93
14653--14698
22
2.0
23
83
4
58
52
0
13
34
1.40
15973--16087
52
2.2
52
96
0
212
40
8
25
25
1.84
16171--16208
20
1.9
19
85
15
51
15
5
5
73
1.19
28699--28777
24
3.3
24
81
10
99
21
11
10
56
1.63
38346--38372
2
13.5
2
100
0
54
51
0
0
48
1.00
38841--38901
23
2.7
23
78
0
77
18
24
27
29
1.98
46329--46384
27
2.1
27
89
0
85
25
26
8
39
1.85
47750--47803
24
2.2
24
80
0
63
11
12
14
61
1.58
48246--48284
19
2.1
19
90
0
60
38
0
0
61
0.96
48557--48594
7
5.4
7
100
0
76
28
0
0
71
0.87
48557--48600
21
2.1
21
91
0
70
34
0
0
65
0.93
49339--49363
6
4.2
6
100
0
50
16
0
36
48
1.46
51405--51473
25
2.7
26
78
13
72
42
7
1
49
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52374--52425
2
26.0
2
92
7
88
50
0
1
48
1.12
52503--52574
3
24.0
3
74
13
51
26
1
2
69
1.10
52511--52685
26
6.4
25
68
22
79
24
4
1
69
1.15
52503--52649
57
2.6
55
77
13
147
27
2
1
69
1.08
52554--52641
13
5.9
16
79
19
70
26
2
0
71
0.98
52554--52792
4
57.8
4
68
23
72
20
7
0
71
1.14
52554--52793
9
25.9
9
66
20
86
20
7
0
71
1.14
52682--52807
40
3.2
38
76
14
123
17
10
0
71
1.18
59037--59067
13
2.4
13
94
0
53
74
0
25
0
0.82
64496--65458
84
11.5
84
83
3
1150
32
23
19
24
1.98
64496--65448
168
5.7
168
87
1
1270
31
24
19
24
1.98
66014--66073
23
2.5
24
84
10
70
40
3
0
56
1.16
66003--66073
25
2.8
24
79
12
72
42
4
0
53
1.20
66014--66056
17
2.7
16
89
7
61
37
2
0
60
1.10
66951--67001
7
7.3
7
80
10
52
11
5
0
82
0.83
67023--67082
24
2.5
24
82
15
72
23
3
1
71
1.10
67128--67177
3
16.7
3
82
0
64
34
4
0
62
1.14
67102--67172
18
4.1
18
76
20
53
38
2
1
57
1.22
67044--67173
12
10.7
12
72
17
54
29
3
2
64
1.23
67231--67475
4
60.8
4
69
21
65
17
7
2
72
1.19
67230--67476
9
27.4
9
67
19
72
17
7
2
72
1.19
67393--67475
39
2.1
39
85
12
109
16
7
2
73
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67564--67598
6
5.7
6
96
3
61
31
0
0
68
0.90
70466--70559
3
31.0
3
83
10
120
35
1
0
63
1.01
70466--70559
16
6.0
16
81
9
106
35
1
0
63
1.01
70491--70566
13
6.2
12
77
9
55
40
1
0
57
1.07
70470--70576
34
3.1
37
82
7
91
40
1
0
57
1.09
71956--72005
12
4.3
12
78
16
52
30
4
2
64
1.23
72020--72049
2
15.0
2
100
0
60
50
0
0
50
1.00
72063--72305
130
1.9
131
86
2
355
37
6
8
47
1.60
74578--74640
12
5.3
12
73
17
51
20
12
3
63
1.42
74579--74648
35
2.0
35
91
0
113
18
12
4
64
1.44
80059--80092
17
2.0
17
94
0
59
38
11
26
23
1.89
80225--80421
75
2.6
74
81
7
195
34
16
19
29
1.94
81342--81551
53
4.0
53
85
5
257
39
14
19
27
1.90
81361--81583
53
4.2
52
79
10
188
39
14
20
26
1.91
83548--83608
21
3.0
21
90
2
97
11
24
34
29
1.91
83640--83664
3
8.3
3
100
0
50
68
0
0
32
0.90
84764--85114
45
7.8
45
97
0
648
23
24
18
33
1.97
85240--85349
3
36.0
3
80
10
109
32
1
0
64
1.10
85239--85348
11
10.2
11
74
20
67
31
1
0
65
1.09
85240--85339
49
2.1
49
88
3
150
33
2
0
65
1.04
85263--85356
25
3.9
24
76
18
88
37
1
1
60
1.11
86949--87140
106
1.8
106
87
4
289
37
9
10
42
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90473--90505
15
2.1
16
88
5
50
45
15
15
24
1.84
93767--93864
9
10.3
9
77
10
97
15
26
29
28
1.96
93766--93862
19
5.1
19
88
6
133
16
24
29
28
1.97
93876--93917
22
1.9
22
95
0
75
23
40
21
14
1.90
93911--93937
7
3.9
7
100
0
54
14
25
29
29
1.95
103611--103639
8
3.8
8
90
9
51
58
0
13
27
1.36
103611--103639
15
1.9
15
100
0
58
58
0
13
27
1.36
105153--105269
60
2.0
60
98
0
225
38
27
7
26
1.83
107673--107714
21
2.0
21
90
0
66
26
26
21
26
1.99
107825--107885
19
3.2
19
83
0
68
40
9
9
39
1.72
107950--108009
29
2.0
31
90
6
97
41
16
6
35
1.75
109280--109327
19
2.5
20
82
3
62
29
12
6
52
1.63
110533--110572
20
2.0
20
90
0
62
27
27
17
27
1.98
110677--110737
19
3.2
19
83
0
68
40
9
9
39
1.72
110802--110861
29
2.0
31
90
6
97
41
16
6
35
1.75
111635--111690
24
2.3
24
87
0
76
30
5
0
64
1.16
112767--112809
22
1.9
23
90
4
70
48
2
0
48
1.14
114417--114469
18
2.7
19
80
13
54
41
0
0
58
0.98

Tables:   1

The End!