Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008480.1 Hibiscus syriacus cultivar Beakdansim tig00111311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2515485
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 12 of 13
Found at i:2300293 original size:52 final size:50
Alignment explanation
Indices: 2300166--2300363 Score: 122
Period size: 52 Copynumber: 3.9 Consensus size: 50
2300156 TACTATATAT
* * *
2300166 TATTAA-ATTTTATTATATATATTAAATATTTTAATAGTATTAAATATTA
1 TATTAATAATTTATTATATATATTAAATATTTTAATAATAATAAATATTA
** *
2300215 -AACAATATTATTT-TTATACAAATATTAAATATTTTAATAAATAATATAA-ATTA
1 TATTAATA--ATTTATTAT--ATATATTAAATATTTTAAT-AATAATA-AATATTA
* * * *
2300268 TATTAATAATTTATTATATATTATTAAGTTAAATTATAATATTGAA-AAATATAA
1 TATTAATAATTTATTATATA-TATTAA---ATATTTTAATAAT-AATAAATATTA
* * *
2300322 TATTATTAA--TGTTATATATACTAAATATTTTAATAACTAATA
1 TATTAATAATTTATTATATATATTAAATATTTTAATAA-TAATA
2300364 TACTTTTTTG
Statistics
Matches: 113, Mismatches: 19, Indels: 34
0.68 0.11 0.20
Matches are distributed among these distances:
48 14 0.12
49 3 0.03
50 4 0.04
51 10 0.09
52 36 0.32
53 15 0.13
54 21 0.19
55 10 0.09
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.47
Consensus pattern (50 bp):
TATTAATAATTTATTATATATATTAAATATTTTAATAATAATAAATATTA
Found at i:2306381 original size:3 final size:3
Alignment explanation
Indices: 2306373--2306458 Score: 93
Period size: 3 Copynumber: 28.3 Consensus size: 3
2306363 ATTTATTTAT
** **
2306373 TAA TAA TAA TAA T-A TAA TTT TAA TAA TAA TTAA TAA TTT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
* *
2306418 TAT TAA TAA TAA TATT TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA T
2306459 TTTAAAAATA
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
2 2 0.03
3 61 0.90
4 5 0.07
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (3 bp):
TAA
Found at i:2306426 original size:28 final size:26
Alignment explanation
Indices: 2306373--2306458 Score: 70
Period size: 28 Copynumber: 3.3 Consensus size: 26
2306363 ATTTATTTAT
* *
2306373 TAATAATAATAA-TATAAT--TTTAA
1 TAATAATAATAATTTTAATAATATAA
2306396 TAATAATTAATAATTTTAATAATATTAA
1 TAATAA-TAATAATTTTAATAATA-TAA
* **
2306424 TAATAATATTTAATAATAATAATAATAA
1 TAATAATA-ATAATTTTAATAAT-ATAA
2306452 TAATAAT
1 TAATAAT
2306459 TTTAAAAATA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
23 6 0.12
24 6 0.12
25 5 0.10
27 3 0.06
28 30 0.59
29 1 0.02
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
TAATAATAATAATTTTAATAATATAA
Found at i:2306431 original size:31 final size:31
Alignment explanation
Indices: 2306371--2306458 Score: 115
Period size: 31 Copynumber: 2.9 Consensus size: 31
2306361 TTATTTATTT
**
2306371 ATTAATAATAATAAT-ATAATTTTAATAATA
1 ATTAATAATAATAATAATAATAATAATAATA
** *
2306401 ATTAATAATTTTAATAATATTAATAATAATA
1 ATTAATAATAATAATAATAATAATAATAATA
*
2306432 TTTAATAATAATAATAATAATAATAAT
1 ATTAATAATAATAATAATAATAATAAT
2306459 TTTAAAAATA
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
30 13 0.27
31 35 0.73
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (31 bp):
ATTAATAATAATAATAATAATAATAATAATA
Found at i:2306450 original size:19 final size:18
Alignment explanation
Indices: 2306376--2306449 Score: 96
Period size: 19 Copynumber: 3.9 Consensus size: 18
2306366 TATTTATTAA
2306376 TAATAATAAT-ATAATTT
1 TAATAATAATAATAATTT
2306393 TAATAATAATTAATAATTT
1 TAATAATAA-TAATAATTT
2306412 TAATAATATTAATAATAATATT
1 TAAT-A-A-TAATAATAAT-TT
2306434 TAATAATAATAATAAT
1 TAATAATAATAATAAT
2306450 AATAATAATT
Statistics
Matches: 51, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.18
18 1 0.02
19 21 0.41
20 2 0.04
21 9 0.18
22 9 0.18
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATAATAATAATAATTT
Found at i:2306631 original size:20 final size:20
Alignment explanation
Indices: 2306603--2306657 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
2306593 AAAACATTCT
*
2306603 GCCCAGAGGTCTTAT-GAATG
1 GCCCTGAGGTCTTATAG-ATG
2306623 GCCCTGAGGTCTTATAGATG
1 GCCCTGAGGTCTTATAGATG
*
2306643 GCCCTGAGGTGTTAT
1 GCCCTGAGGTCTTAT
2306658 CATCTTACAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (20 bp):
GCCCTGAGGTCTTATAGATG
Found at i:2306924 original size:22 final size:23
Alignment explanation
Indices: 2306863--2306925 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 23
2306853 TTTTTGAAAA
*
2306863 CATCCTGCACTGTAGGTCTTATG
1 CATCTTGCACTGTAGGTCTTATG
* * *
2306886 GA--TGGCCCTG-AGGTCTTAT-
1 CATCTTGCACTGTAGGTCTTATG
2306905 CATCTTGCACTGTAGGTCTTA
1 CATCTTGCACTGTAGGTCTTA
2306926 CAGATGACCT
Statistics
Matches: 30, Mismatches: 7, Indels: 7
0.68 0.16 0.16
Matches are distributed among these distances:
19 1 0.03
20 9 0.30
21 11 0.37
22 8 0.27
23 1 0.03
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (23 bp):
CATCTTGCACTGTAGGTCTTATG
Found at i:2306943 original size:116 final size:116
Alignment explanation
Indices: 2306739--2307115 Score: 637
Period size: 116 Copynumber: 3.2 Consensus size: 116
2306729 TAAAATCTCA
* * * * * *
2306739 TTTGAAAACATCCTGCACTGGAGGTCTTATAGATGGCCCTGAGGTCTTATCATTTTGCATTATAG
1 TTTGAAAACATCATGCACTGTAGGTCTTATGGATGGCCCTGAGGTCTTATCATCTTGCACTGTAG
2306804 GTCTTACAGATGACCCGGAGGCTTTAAATATCAAAAAGCTCCCGAAGGCTT
66 GTCTTACAGATGACCCGGAGGCTTTAAATATCAAAAAGCTCCCGAAGGCTT
*
2306855 TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGGCCCTGAGGTCTTATCATCTTGCACTGTAG
1 TTTGAAAACATCATGCACTGTAGGTCTTATGGATGGCCCTGAGGTCTTATCATCTTGCACTGTAG
*
2306920 GTCTTACAGATGACCTGGAGGCTTTAAATATCAAAAAGCTCCCGAAGGCTT
66 GTCTTACAGATGACCCGGAGGCTTTAAATATCAAAAAGCTCCCGAAGGCTT
* * *
2306971 TTTGAAAACATCATGCACTATAGGTCTTAAGGATGGCCATGAGGTCTTATCATCTTGCACTGTAG
1 TTTGAAAACATCATGCACTGTAGGTCTTATGGATGGCCCTGAGGTCTTATCATCTTGCACTGTAG
* *
2307036 GTCTTACAGATGACCCAGAGGCTTTAAATATCAAAAAGCTCCCAAAGGCTT
66 GTCTTACAGATGACCCGGAGGCTTTAAATATCAAAAAGCTCCCGAAGGCTT
2307087 TTTGAAAACATCATGCACTGTAGGTCTTA
1 TTTGAAAACATCATGCACTGTAGGTCTTA
2307116 CAGATGTGGG
Statistics
Matches: 247, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 247 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (116 bp):
TTTGAAAACATCATGCACTGTAGGTCTTATGGATGGCCCTGAGGTCTTATCATCTTGCACTGTAG
GTCTTACAGATGACCCGGAGGCTTTAAATATCAAAAAGCTCCCGAAGGCTT
Found at i:2308516 original size:53 final size:52
Alignment explanation
Indices: 2308405--2308655 Score: 283
Period size: 53 Copynumber: 4.8 Consensus size: 52
2308395 ATAATCACTG
* * * * * *
2308405 GTTCATAAAACATTTGGCAACACATTCATCATTTCCTGTGGTTTTGCACAAAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCTTGT-GTTTTGTACAGAT
* *
2308458 GTTCGTAAAACATTTGACAACACATTCATTCTTT-TTGTGTCTTATGTAGAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCTTGTGT-TT-TGTACAGAT
* * * *
2308511 ATTCGTAATACATTTGACAACACATTCATCCTTTCATGTGGTTTCTGCACAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCTTGT-GTTT-TGTACAGAT
* *
2308565 GTTCGTAAAATATTTGACAACACATTCGT-CTTTCTTGTGTATTTGTACAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCTTGTGT-TTTGTACAGAT
* *
2308617 GTTCGT-ATACATTTGACAACACATTCATCCTTTCCTGTG
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCTTGTG
2308656 GCTTCTGCAC
Statistics
Matches: 167, Mismatches: 25, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
51 21 0.13
52 30 0.18
53 77 0.46
54 37 0.22
55 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (52 bp):
GTTCGTAAAACATTTGACAACACATTCATCCTTTCTTGTGTTTTGTACAGAT
Found at i:2308664 original size:105 final size:106
Alignment explanation
Indices: 2308414--2308672 Score: 380
Period size: 105 Copynumber: 2.4 Consensus size: 106
2308404 GGTTCATAAA
* * * *
2308414 ACATTTGGCAACACATTCATCATTTCCTGTGGTTTTGCACAAATGTTCGTAAAACATTTGACAAC
1 ACATTTGACAACACATTCATCCTTTCCTGTGGTTCTGCACAGATGTTCGTAAAACATTTGACAAC
* * *
2308479 ACATTCATTCTTTTTGTGTCTTATGTAGAGATATTCGTAAT
66 ACATTCAGTCTTTTTGTGTATTATGTACAGATATTCGTAAT
* *
2308520 ACATTTGACAACACATTCATCCTTTCATGTGGTTTCTGCACAGATGTTCGTAAAATATTTGACAA
1 ACATTTGACAACACATTCATCCTTTCCTGTGG-TTCTGCACAGATGTTCGTAAAACATTTGACAA
*
2308585 CACATTC-GTCTTTCTTGTGTATT-TGTACAGATGTTCGT-AT
65 CACATTCAGTCTTT-TTGTGTATTATGTACAGATATTCGTAAT
2308625 ACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCACAGATGTT
1 ACATTTGACAACACATTCATCCTTTCCTGTGG-TTCTGCACAGATGTT
2308673 TGCCAGTGAA
Statistics
Matches: 139, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
105 48 0.35
106 47 0.34
107 44 0.32
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (106 bp):
ACATTTGACAACACATTCATCCTTTCCTGTGGTTCTGCACAGATGTTCGTAAAACATTTGACAAC
ACATTCAGTCTTTTTGTGTATTATGTACAGATATTCGTAAT
Found at i:2309708 original size:41 final size:41
Alignment explanation
Indices: 2309579--2309708 Score: 104
Period size: 42 Copynumber: 3.1 Consensus size: 41
2309569 AATACAGACG
*
2309579 TTCAAAATGCCCCAACATTCTTGA-TTCTGATTGAAATGGGCT
1 TTCAAAATGCCCCAACATT-TT-ATTTCTGATTGAAATGGACT
** * * * * * * *
2309621 TTCAGCATGCCCC-ACATGAATCATTTATGTTTGAATTAGACA
1 TTCAAAATGCCCCAACAT--TTTATTTCTGATTGAAATGGACT
2309663 TTCAAAATGCCCCAACATTTTATTTCT-AGTTGAAATGGACT
1 TTCAAAATGCCCCAACATTTTATTTCTGA-TTGAAATGGACT
2309704 TTCAA
1 TTCAA
2309709 GATGTTTCAC
Statistics
Matches: 64, Mismatches: 19, Indels: 11
0.68 0.20 0.12
Matches are distributed among these distances:
41 25 0.39
42 35 0.55
43 4 0.06
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.35
Consensus pattern (41 bp):
TTCAAAATGCCCCAACATTTTATTTCTGATTGAAATGGACT
Found at i:2314784 original size:42 final size:43
Alignment explanation
Indices: 2314737--2314817 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
2314727 CGGTACATCA
* * *
2314737 AACAAAACTTTATATATA-GGGATAGCTTTCACTCCTAACTTC
1 AACAAAAATTTACATATAGGGGATAACTTTCACTCCTAACTTC
2314779 AACAAAAATTTACATATAGGGGATAACTTTCACTCCTAA
1 AACAAAAATTTACATATAGGGGATAACTTTCACTCCTAA
2314818 ATTTTACAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 16 0.46
43 19 0.54
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (43 bp):
AACAAAAATTTACATATAGGGGATAACTTTCACTCCTAACTTC
Found at i:2315186 original size:36 final size:36
Alignment explanation
Indices: 2315136--2315221 Score: 136
Period size: 36 Copynumber: 2.4 Consensus size: 36
2315126 CCATAAACTG
*
2315136 CTTTTGGTACCAATCGAACAGGATCTTTGTGGAATA
1 CTTTTGGTATCAATCGAACAGGATCTTTGTGGAATA
* * *
2315172 CTTTTGGTATCAATCTAATATGATCTTTGTGGAATA
1 CTTTTGGTATCAATCGAACAGGATCTTTGTGGAATA
2315208 CTTTTGGTATCAAT
1 CTTTTGGTATCAAT
2315222 ATTACAGGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (36 bp):
CTTTTGGTATCAATCGAACAGGATCTTTGTGGAATA
Found at i:2315233 original size:36 final size:36
Alignment explanation
Indices: 2315136--2315233 Score: 133
Period size: 36 Copynumber: 2.7 Consensus size: 36
2315126 CCATAAACTG
* **
2315136 CTTTTGGTACCAATCGAACAGGATCTTTGTGGAATA
1 CTTTTGGTATCAATATAACAGGATCTTTGTGGAATA
* * *
2315172 CTTTTGGTATCAATCTAATATGATCTTTGTGGAATA
1 CTTTTGGTATCAATATAACAGGATCTTTGTGGAATA
*
2315208 CTTTTGGTATCAATATTACAGGATCT
1 CTTTTGGTATCAATATAACAGGATCT
2315234 CTATGTGCAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (36 bp):
CTTTTGGTATCAATATAACAGGATCTTTGTGGAATA
Found at i:2316794 original size:2 final size:2
Alignment explanation
Indices: 2316787--2316817 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
2316777 AACAAAGTAA
*
2316787 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2316818 AGAAGGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:2318455 original size:3 final size:3
Alignment explanation
Indices: 2318447--2318532 Score: 111
Period size: 3 Copynumber: 28.3 Consensus size: 3
2318437 ATTATTTATT
*
2318447 TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAT TAA TAA TAA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
** *
2318492 TAA TTT TAA TAA TAA TAA TAA TATT TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA T
2318533 TTTAAAAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
2 2 0.03
3 65 0.90
4 5 0.07
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:2320978 original size:18 final size:18
Alignment explanation
Indices: 2320955--2320990 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2320945 ATATTCATTC
*
2320955 ATATATATATACATATAT
1 ATATATATAAACATATAT
2320973 ATATATATAAACATATAT
1 ATATATATAAACATATAT
2320991 TCATGTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATATATAAACATATAT
Found at i:2321261 original size:21 final size:21
Alignment explanation
Indices: 2321236--2321295 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
2321226 GTGTAGAATT
2321236 TGTCCCGAAGGACCACGTAGA
1 TGTCCCGAAGGACCACGTAGA
*
2321257 TGTCCCGAAGGGCCAC-T--A
1 TGTCCCGAAGGACCACGTAGA
*
2321275 TGTCCCGAAAGACCACGTAGA
1 TGTCCCGAAGGACCACGTAGA
2321296 CCCTCGACTC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 15 0.45
19 1 0.03
20 1 0.03
21 16 0.48
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.15
Consensus pattern (21 bp):
TGTCCCGAAGGACCACGTAGA
Found at i:2321279 original size:18 final size:20
Alignment explanation
Indices: 2321236--2321293 Score: 75
Period size: 18 Copynumber: 3.0 Consensus size: 20
2321226 GTGTAGAATT
2321236 TGTCCCGAAGGACCACGTAGA
1 TGTCCCGAAGGACCACGTA-A
*
2321257 TGTCCCGAAGGGCCAC-T-A
1 TGTCCCGAAGGACCACGTAA
*
2321275 TGTCCCGAAAGACCACGTA
1 TGTCCCGAAGGACCACGTA
2321294 GACCCTCGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
18 15 0.47
19 1 0.03
20 1 0.03
21 15 0.47
ACGTcount: A:0.28, C:0.31, G:0.26, T:0.16
Consensus pattern (20 bp):
TGTCCCGAAGGACCACGTAA
Found at i:2321423 original size:15 final size:13
Alignment explanation
Indices: 2321377--2321423 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
2321367 CATTACACAT
2321377 TCACATA-TTCATA
1 TCACATAGTTC-TA
*
2321390 TCACATAGTTCTT
1 TCACATAGTTCTA
2321403 TCACATAGCTCTCTA
1 TCACATAG-T-TCTA
2321418 TCACAT
1 TCACAT
2321424 TTCATATGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 16 0.55
14 4 0.14
15 9 0.31
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.38
Consensus pattern (13 bp):
TCACATAGTTCTA
Found at i:2323848 original size:23 final size:22
Alignment explanation
Indices: 2323821--2323895 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 22
2323811 TGATATATGA
2323821 ATATGCAATACGTGATACATGTG
1 ATATG-AATACGTGATACATGTG
* ** *
2323844 ATATG-ATATGAAATGACATATG
1 ATATGAATACGTGAT-ACATGTG
*
2323866 AATATGTAATGCGTGATACATGTG
1 -ATATG-AATACGTGATACATGTG
2323890 ATATGA
1 ATATGA
2323896 TATGAAATAC
Statistics
Matches: 39, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
21 6 0.15
22 7 0.18
23 15 0.38
24 6 0.15
25 5 0.13
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (22 bp):
ATATGAATACGTGATACATGTG
Found at i:2323855 original size:46 final size:46
Alignment explanation
Indices: 2323803--2323907 Score: 176
Period size: 46 Copynumber: 2.3 Consensus size: 46
2323793 CTATATGATT
*
2323803 ATATGAAATGATATATGAATATGCAATACGTGATACATGTGATATG
1 ATATGAAATGACATATGAATATGCAATACGTGATACATGTGATATG
* *
2323849 ATATGAAATGACATATGAATATGTAATGCGTGATACATGTGATATG
1 ATATGAAATGACATATGAATATGCAATACGTGATACATGTGATATG
2323895 ATATGAAAT-ACAT
1 ATATGAAATGACAT
2323908 GGTTACACAT
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 4 0.07
46 52 0.93
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.32
Consensus pattern (46 bp):
ATATGAAATGACATATGAATATGCAATACGTGATACATGTGATATG
Found at i:2324112 original size:38 final size:38
Alignment explanation
Indices: 2324056--2324151 Score: 147
Period size: 38 Copynumber: 2.5 Consensus size: 38
2324046 TATAAGACAT
* *
2324056 ATGATAGGTCATACGGGACACAGATTACATCCTTCGGG
1 ATGATAGGTCATTCGGGACACAGATGACATCCTTCGGG
* *
2324094 ATGACAGGTCATTCGGGACACATATGACATCCTTCGGG
1 ATGATAGGTCATTCGGGACACAGATGACATCCTTCGGG
*
2324132 ATGATAGGTCCTTCGGGACA
1 ATGATAGGTCATTCGGGACA
2324152 TTTATACGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (38 bp):
ATGATAGGTCATTCGGGACACAGATGACATCCTTCGGG
Found at i:2329161 original size:22 final size:21
Alignment explanation
Indices: 2329136--2329208 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 21
2329126 TTATATGAAA
2329136 TGATATATGAATATGCAATACG
1 TGATATATGAATATG-AATACG
* * **
2329158 TGATACATGTGATATGATATGAAA
1 TGATATATG-AATATGA-AT-ACG
*
2329182 TGACATATGAATATGTAATACG
1 TGATATATGAATATG-AATACG
2329204 TGATA
1 TGATA
2329209 CATGTGATAT
Statistics
Matches: 37, Mismatches: 10, Indels: 8
0.67 0.18 0.15
Matches are distributed among these distances:
22 14 0.38
23 14 0.38
24 9 0.24
ACGTcount: A:0.41, C:0.07, G:0.19, T:0.33
Consensus pattern (21 bp):
TGATATATGAATATGAATACG
Found at i:2329173 original size:23 final size:22
Alignment explanation
Indices: 2329146--2329220 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 22
2329136 TGATATATGA
2329146 ATATGCAATACGTGATACATGTG
1 ATATG-AATACGTGATACATGTG
* ** *
2329169 ATATG-ATATGAAATGACATATG
1 ATATGAATACGTGAT-ACATGTG
2329191 AATATGTAATACGTGATACATGTG
1 -ATATG-AATACGTGATACATGTG
2329215 ATATGA
1 ATATGA
2329221 TATGAAATAC
Statistics
Matches: 40, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
21 6 0.15
22 7 0.17
23 15 0.38
24 6 0.15
25 6 0.15
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (22 bp):
ATATGAATACGTGATACATGTG
Found at i:2329180 original size:46 final size:46
Alignment explanation
Indices: 2329120--2329233 Score: 189
Period size: 46 Copynumber: 2.5 Consensus size: 46
2329110 GAGATAAGCT
*
2329120 ATGTGAT-T-ATATGAAATGATATATGAATATGCAATACGTGATAC
1 ATGTGATATGATATGAAATGACATATGAATATGCAATACGTGATAC
*
2329164 ATGTGATATGATATGAAATGACATATGAATATGTAATACGTGATAC
1 ATGTGATATGATATGAAATGACATATGAATATGCAATACGTGATAC
2329210 ATGTGATATGATATGAAAT-ACATA
1 ATGTGATATGATATGAAATGACATA
2329234 GTTACACATA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
44 7 0.11
45 6 0.09
46 53 0.80
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (46 bp):
ATGTGATATGATATGAAATGACATATGAATATGCAATACGTGATAC
Found at i:2329437 original size:38 final size:38
Alignment explanation
Indices: 2329381--2329476 Score: 129
Period size: 38 Copynumber: 2.5 Consensus size: 38
2329371 TATAAGACAT
* * **
2329381 ATGATAGGTCCTGCGGGACACAGATTACATCCTTCGGG
1 ATGATAGGTCCTTCGGGACACAGATGACATCCTTCAAG
* *
2329419 ATGACAGGTCCTTCGGGACACAGATGACATCCTTCAAT
1 ATGATAGGTCCTTCGGGACACAGATGACATCCTTCAAG
*
2329457 ATGATAGGTCCTTTGGGACA
1 ATGATAGGTCCTTCGGGACA
2329477 TTTATACGAG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (38 bp):
ATGATAGGTCCTTCGGGACACAGATGACATCCTTCAAG
Found at i:2329453 original size:21 final size:21
Alignment explanation
Indices: 2329389--2329453 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
2329379 ATATGATAGG
* *
2329389 TCCTGCGGGACACAGATTACA
1 TCCTTCGGGACACAGATGACA
*
2329410 TCCTTCGGGATGACAG--G---
1 TCCTTCGGGA-CACAGATGACA
2329427 TCCTTCGGGACACAGATGACA
1 TCCTTCGGGACACAGATGACA
2329448 TCCTTC
1 TCCTTC
2329454 AATATGATAG
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
16 4 0.12
17 10 0.29
18 1 0.03
21 15 0.44
22 4 0.12
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (21 bp):
TCCTTCGGGACACAGATGACA
Found at i:2332539 original size:19 final size:19
Alignment explanation
Indices: 2332515--2332593 Score: 104
Period size: 19 Copynumber: 4.1 Consensus size: 19
2332505 GTCGAGGGTT
2332515 ATATGAGGTCCTTCGGGAC
1 ATATGAGGTCCTTCGGGAC
2332534 ATATGAGGTCCTTCGGGAC
1 ATATGAGGTCCTTCGGGAC
* * *
2332553 ATACGAGGTCCTTTGGGAT
1 ATATGAGGTCCTTCGGGAC
*
2332572 ATACATGAGGTCCTTTGGGAC
1 AT--ATGAGGTCCTTCGGGAC
2332593 A
1 A
2332594 AATTTCATAT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
19 37 0.70
21 16 0.30
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (19 bp):
ATATGAGGTCCTTCGGGAC
Found at i:2332584 original size:40 final size:38
Alignment explanation
Indices: 2332519--2332593 Score: 105
Period size: 40 Copynumber: 1.9 Consensus size: 38
2332509 AGGGTTATAT
2332519 GAGGTCCTTCGGGACATATGAGGTCCTTCGGGACATAC
1 GAGGTCCTTCGGGACATATGAGGTCCTTCGGGACATAC
* * *
2332557 GAGGTCCTTTGGGATATACATGAGGTCCTTTGGGACA
1 GAGGTCCTTCGGGACAT--ATGAGGTCCTTCGGGACA
2332594 AATTTCATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 15 0.47
40 17 0.53
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (38 bp):
GAGGTCCTTCGGGACATATGAGGTCCTTCGGGACATAC
Found at i:2339793 original size:91 final size:91
Alignment explanation
Indices: 2339682--2339869 Score: 349
Period size: 91 Copynumber: 2.1 Consensus size: 91
2339672 ATCTAATTCC
*
2339682 AGAACTGATACTGCTGAAGATTCAGTTCCGATAGTAAGATATGGCTAGCCATTACATCTCAAACT
1 AGAACTGATAATGCTGAAGATTCAGTTCCGATAGTAAGATATGGCTAGCCATTACATCTCAAACT
2339747 GCTTAGTCATTTGGTAATCAATATGT
66 GCTTAGTCATTTGGTAATCAATATGT
* *
2339773 AGAACTGATAATGCTGAAGATTCCGTTCCGATGGTAAGATATGGCTAGCCATTACATCTCAAACT
1 AGAACTGATAATGCTGAAGATTCAGTTCCGATAGTAAGATATGGCTAGCCATTACATCTCAAACT
2339838 GCTTAGTCATTTGGTAATCAATATGT
66 GCTTAGTCATTTGGTAATCAATATGT
2339864 AGAACT
1 AGAACT
2339870 AATGATTCTT
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 94 1.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (91 bp):
AGAACTGATAATGCTGAAGATTCAGTTCCGATAGTAAGATATGGCTAGCCATTACATCTCAAACT
GCTTAGTCATTTGGTAATCAATATGT
Found at i:2341007 original size:21 final size:20
Alignment explanation
Indices: 2340983--2341022 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
2340973 AATTAAAAAT
* *
2340983 AATATTATTCAAATTATATTG
1 AATATAATT-AAAATATATTG
2341004 AATATAATTAAAATATATT
1 AATATAATTAAAATATATT
2341023 AACTTTTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (20 bp):
AATATAATTAAAATATATTG
Found at i:2341925 original size:19 final size:19
Alignment explanation
Indices: 2341889--2341924 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
2341879 TTAGAAGGTG
*
2341889 AAATTATTATAATATTTTA
1 AAATTAATATAATATTTTA
2341908 AAATTAATA-AATATTTT
1 AAATTAATATAATATTTT
2341925 TTATAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATTAATATAATATTTTA
Found at i:2341939 original size:19 final size:20
Alignment explanation
Indices: 2341903--2341941 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
2341893 TATTATAATA
*
2341903 TTTTAAAATTAATAAATATT
1 TTTTAAAATAAATAAATATT
*
2341923 TTTTATAATAAAT-AATATT
1 TTTTAAAATAAATAAATATT
2341942 AATTATTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTTAAAATAAATAAATATT
Found at i:2345590 original size:23 final size:23
Alignment explanation
Indices: 2345564--2345666 Score: 78
Period size: 23 Copynumber: 4.7 Consensus size: 23
2345554 ATGTGAAGTT
2345564 TGAATAAATTGGATAAAATGTTA
1 TGAATAAATTGGATAAAATGTTA
* *
2345587 TGAATAAATTGAAT-AAATGTGAA
1 TGAATAAATTGGATAAAATGT-TA
*
2345610 GTG-ATCAATTGG-T----TGTT-
1 -TGAATAAATTGGATAAAATGTTA
*
2345627 TGAATATATTGGATAAAATGTTA
1 TGAATAAATTGGATAAAATGTTA
* *
2345650 TGGATAAATTGAATAAA
1 TGAATAAATTGGATAAA
2345667 TGTGAAGTGA
Statistics
Matches: 61, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
16 2 0.03
17 7 0.11
18 1 0.02
19 3 0.05
22 11 0.18
23 35 0.57
24 2 0.03
ACGTcount: A:0.44, C:0.01, G:0.19, T:0.36
Consensus pattern (23 bp):
TGAATAAATTGGATAAAATGTTA
Found at i:2345629 original size:63 final size:63
Alignment explanation
Indices: 2345561--2345688 Score: 222
Period size: 63 Copynumber: 2.0 Consensus size: 63
2345551 ATTATGTGAA
2345561 GTTTGAATAAATTGGATAAAATGTTATGAATAAATTGAATAAATGTGAAGTGATCAA-TTGGTT
1 GTTTGAATAAATTGGATAAAATGTTATGAATAAATTGAATAAATGTGAAGTGAT-AAGTTGGTT
* *
2345624 GTTTGAATATATTGGATAAAATGTTATGGATAAATTGAATAAATGTGAAGTGATAAGTTGGTT
1 GTTTGAATAAATTGGATAAAATGTTATGAATAAATTGAATAAATGTGAAGTGATAAGTTGGTT
2345687 GT
1 GT
2345689 GACATTGAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
62 2 0.03
63 60 0.97
ACGTcount: A:0.39, C:0.01, G:0.23, T:0.38
Consensus pattern (63 bp):
GTTTGAATAAATTGGATAAAATGTTATGAATAAATTGAATAAATGTGAAGTGATAAGTTGGTT
Found at i:2345773 original size:14 final size:14
Alignment explanation
Indices: 2345754--2345784 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
2345744 TGATAAGTTG
2345754 GTTTTAATGTATAT
1 GTTTTAATGTATAT
2345768 GTTTTAATGTATAT
1 GTTTTAATGTATAT
2345782 GTT
1 GTT
2345785 AAGGATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (14 bp):
GTTTTAATGTATAT
Found at i:2345937 original size:34 final size:34
Alignment explanation
Indices: 2345892--2345964 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
2345882 TTAAGTTGAA
2345892 TTTAATGTTAAATTTCAAATACCATAATTTGTAT
1 TTTAATGTTAAATTTCAAATACCATAATTTGTAT
* * *
2345926 TTTAATTTTAAATTTCGAATACTATAATTTGTAT
1 TTTAATGTTAAATTTCAAATACCATAATTTGTAT
*
2345960 ATTAA
1 TTTAA
2345965 AAACATTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.49
Consensus pattern (34 bp):
TTTAATGTTAAATTTCAAATACCATAATTTGTAT
Found at i:2346525 original size:21 final size:21
Alignment explanation
Indices: 2346474--2346525 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
2346464 GGTGTCATAA
* * *
2346474 AACCCTACAGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
2346495 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
2346516 AACCCTGCGG
1 AACCCTGCGG
2346526 AGATGGCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 3 0.12
21 20 0.77
22 3 0.12
ACGTcount: A:0.25, C:0.27, G:0.31, T:0.17
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:2348140 original size:17 final size:17
Alignment explanation
Indices: 2348118--2348156 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
2348108 TGCATTATAA
*
2348118 AAATTTATAATTAATAT
1 AAATTTATAATAAATAT
* *
2348135 AAATTTATTATAAATTT
1 AAATTTATAATAAATAT
2348152 AAATT
1 AAATT
2348157 AAAAATAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATTTATAATAAATAT
Found at i:2348186 original size:22 final size:20
Alignment explanation
Indices: 2348139--2348186 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 20
2348129 TAATATAAAT
*
2348139 TTATTATAAATTTAAATTAA
1 TTATAATAAATTTAAATTAA
**
2348159 AAATAATAAATATTAACATTAA
1 TTATAATAAAT-TTAA-ATTAA
2348181 TTATAA
1 TTATAA
2348187 AAAAAATAGT
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
20 8 0.38
21 4 0.19
22 9 0.43
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
TTATAATAAATTTAAATTAA
Found at i:2348378 original size:17 final size:15
Alignment explanation
Indices: 2348331--2348370 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
2348321 TATATAACAA
2348331 TTATATAAATATTATT
1 TTATATAAATATTA-T
*
2348347 TTAATAAAAATATTAT
1 TT-ATATAAATATTAT
2348363 TTATATAA
1 TTATATAA
2348371 TTATATTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 5 0.24
16 5 0.24
17 11 0.52
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATATAAATATTAT
Found at i:2349794 original size:21 final size:21
Alignment explanation
Indices: 2349739--2349794 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
2349729 AAAGTTGACG
*
2349739 TTTTAATTGAATTTTATTCAC
1 TTTTAATTGATTTTTATTCAC
**
2349760 TTTTAATTCTTTTTTATTGCA-
1 TTTTAATTGATTTTTATT-CAC
*
2349781 TTTTTATTGATTTT
1 TTTTAATTGATTTT
2349795 AAAAAAAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.21, C:0.07, G:0.05, T:0.66
Consensus pattern (21 bp):
TTTTAATTGATTTTTATTCAC
Found at i:2349891 original size:32 final size:32
Alignment explanation
Indices: 2349836--2349921 Score: 97
Period size: 32 Copynumber: 2.7 Consensus size: 32
2349826 TATCAATTGT
*
2349836 AATTAAAAG-T-ATAAAAATGCAATAAAAAAAG
1 AATTAAAAGTTAAT-AAAATTCAATAAAAAAAG
*
2349867 AATTAAAAGTTAATAAAATTCAATACAAAAAG
1 AATTAAAAGTTAATAAAATTCAATAAAAAAAG
* *
2349899 AA-TATAAAGTCAAAAAAATTCAA
1 AATTA-AAAGTTAATAAAATTCAA
2349922 AAATATATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
31 11 0.23
32 35 0.73
33 2 0.04
ACGTcount: A:0.65, C:0.06, G:0.07, T:0.22
Consensus pattern (32 bp):
AATTAAAAGTTAATAAAATTCAATAAAAAAAG
Found at i:2350800 original size:24 final size:25
Alignment explanation
Indices: 2350757--2350806 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
2350747 ATAACAAACT
*
2350757 TGGAAAAGGAGTGGACCAAAAACAG
1 TGGAAAAGGAGAGGACCAAAAACAG
* *
2350782 TGGAAAAGGA-AGGATCAAAAGCAG
1 TGGAAAAGGAGAGGACCAAAAACAG
2350806 T
1 T
2350807 TTCCAAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.48, C:0.10, G:0.32, T:0.10
Consensus pattern (25 bp):
TGGAAAAGGAGAGGACCAAAAACAG
Found at i:2354168 original size:20 final size:20
Alignment explanation
Indices: 2354102--2354185 Score: 87
Period size: 20 Copynumber: 4.2 Consensus size: 20
2354092 GTTTCTAATT
*
2354102 TCGCAACGCGAATATGTAAA
1 TCGCAACGCGAATTTGTAAA
*** * **
2354122 TCGCGTTGCGATTTTCCAAA
1 TCGCAACGCGAATTTGTAAA
*
2354142 TTCGCAACGCGAATCTGTAAA
1 -TCGCAACGCGAATTTGTAAA
2354163 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATTTGTAAA
2354183 TCG
1 TCG
2354186 TAACACAAAA
Statistics
Matches: 48, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
20 35 0.73
21 13 0.27
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (20 bp):
TCGCAACGCGAATTTGTAAA
Found at i:2354222 original size:21 final size:20
Alignment explanation
Indices: 2354138--2354275 Score: 106
Period size: 20 Copynumber: 6.8 Consensus size: 20
2354128 TGCGATTTTC
*
2354138 CAAATTCGCAACGCGAATCTGT
1 CAAATTCGCAACACGAA--TGT
*
2354160 -AAA-TCGCAACGCGAATTTGT
1 CAAATTCGCAACACGAA--TGT
* * *
2354180 -AAA-TCGTAACACAAAAGT
1 CAAATTCGCAACACGAATGT
*
2354198 CAAATTCGCAACACTGAATTT
1 CAAATTCGCAACAC-GAATGT
* *
2354219 CAAATTCGCAACACAAAAGT
1 CAAATTCGCAACACGAATGT
2354239 CAAATTCGCAACACG-ATAGT
1 CAAATTCGCAACACGAAT-GT
*
2354259 CAAATTCGCAACGCGAA
1 CAAATTCGCAACACGAA
2354276 ACACAATATT
Statistics
Matches: 96, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
18 2 0.02
19 4 0.04
20 69 0.72
21 21 0.22
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.20
Consensus pattern (20 bp):
CAAATTCGCAACACGAATGT
Found at i:2354232 original size:41 final size:40
Alignment explanation
Indices: 2354187--2354270 Score: 134
Period size: 41 Copynumber: 2.1 Consensus size: 40
2354177 TGTAAATCGT
*
2354187 AACACAAAAGTCAAATTCGCAACACTGA-ATTTCAAATTCGC
1 AACACAAAAGTCAAATTCGCAACAC-GATA-GTCAAATTCGC
2354228 AACACAAAAGTCAAATTCGCAACACGATAGTCAAATTCGC
1 AACACAAAAGTCAAATTCGCAACACGATAGTCAAATTCGC
2354268 AAC
1 AAC
2354271 GCGAAACACA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
40 15 0.37
41 26 0.63
ACGTcount: A:0.45, C:0.25, G:0.11, T:0.19
Consensus pattern (40 bp):
AACACAAAAGTCAAATTCGCAACACGATAGTCAAATTCGC
Found at i:2354243 original size:20 final size:20
Alignment explanation
Indices: 2354187--2354270 Score: 114
Period size: 20 Copynumber: 4.2 Consensus size: 20
2354177 TGTAAATCGT
2354187 AACACAAAAGTCAAATTCGC
1 AACACAAAAGTCAAATTCGC
* **
2354207 AACACTGAATTTCAAATTCGC
1 AACAC-AAAAGTCAAATTCGC
2354228 AACACAAAAGTCAAATTCGC
1 AACACAAAAGTCAAATTCGC
* *
2354248 AACACGATAGTCAAATTCGC
1 AACACAAAAGTCAAATTCGC
2354268 AAC
1 AAC
2354271 GCGAAACACA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
20 38 0.69
21 17 0.31
ACGTcount: A:0.45, C:0.25, G:0.11, T:0.19
Consensus pattern (20 bp):
AACACAAAAGTCAAATTCGC
Found at i:2354404 original size:22 final size:22
Alignment explanation
Indices: 2354379--2354458 Score: 133
Period size: 22 Copynumber: 3.6 Consensus size: 22
2354369 TCACTCTCTA
*
2354379 CGACGACATCCGTCCCCATCTC
1 CGACGAAATCCGTCCCCATCTC
*
2354401 CGACAAAATCCGTCCCCATCTC
1 CGACGAAATCCGTCCCCATCTC
2354423 CGACGAAATCCGTCCCCATCTC
1 CGACGAAATCCGTCCCCATCTC
*
2354445 CGGCGAAATCCGTC
1 CGACGAAATCCGTC
2354459 TATCTCCATC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 54 1.00
ACGTcount: A:0.23, C:0.45, G:0.15, T:0.17
Consensus pattern (22 bp):
CGACGAAATCCGTCCCCATCTC
Found at i:2354825 original size:20 final size:20
Alignment explanation
Indices: 2354802--2354848 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
2354792 AAACTTAAAT
2354802 TCGCAACAAGAAAATGAAAA
1 TCGCAACAAGAAAATGAAAA
*
2354822 TCGCAACACGAAAATGAAAA
1 TCGCAACAAGAAAATGAAAA
2354842 TCGCAAC
1 TCGCAAC
2354849 GCGATTTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.53, C:0.21, G:0.15, T:0.11
Consensus pattern (20 bp):
TCGCAACAAGAAAATGAAAA
Found at i:2354874 original size:19 final size:20
Alignment explanation
Indices: 2354852--2354889 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2354842 TCGCAACGCG
2354852 ATTTT-AGTTTCGCGTTGCT
1 ATTTTCAGTTTCGCGTTGCT
*
2354871 ATTTTCATTTTCGCGTTGC
1 ATTTTCAGTTTCGCGTTGC
2354890 GAATTTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.11, C:0.18, G:0.18, T:0.53
Consensus pattern (20 bp):
ATTTTCAGTTTCGCGTTGCT
Found at i:2356564 original size:14 final size:14
Alignment explanation
Indices: 2356545--2356581 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
2356535 GCTTGTTTAA
2356545 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
2356559 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
2356573 TTGATTTGT
1 TTGATTTGT
2356582 TGTTTTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.49
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:2356661 original size:20 final size:20
Alignment explanation
Indices: 2356636--2356718 Score: 79
Period size: 20 Copynumber: 4.5 Consensus size: 20
2356626 GTTGAAGGTA
2356636 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACGCGAAAGT
2356656 CAAATTCGCAACGCGAAA-T
1 CAAATTCGCAACGCGAAAGT
*** *
2356675 --AA---GCGTTGCGATAGT
1 CAAATTCGCAACGCGAAAGT
*
2356690 CAAATTCGCAACGCGAAAGG
1 CAAATTCGCAACGCGAAAGT
2356710 CAAATTCGC
1 CAAATTCGC
2356719 GTTGCGATTT
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
14 7 0.15
15 1 0.02
17 4 0.08
19 1 0.02
20 35 0.73
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (20 bp):
CAAATTCGCAACGCGAAAGT
Found at i:2356725 original size:20 final size:20
Alignment explanation
Indices: 2356677--2356725 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
2356667 CGCGAAATAA
* *
2356677 GCGTTGCGATAGTCAAATTC
1 GCGTTGCGAAAGGCAAATTC
***
2356697 GCAACGCGAAAGGCAAATTC
1 GCGTTGCGAAAGGCAAATTC
2356717 GCGTTGCGA
1 GCGTTGCGA
2356726 TTTTCGGTTT
Statistics
Matches: 21, Mismatches: 8, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (20 bp):
GCGTTGCGAAAGGCAAATTC
Found at i:2356765 original size:20 final size:20
Alignment explanation
Indices: 2356740--2356789 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
2356730 CGGTTTGCGA
*
2356740 TTTCACGTTGCAAATTTTAC
1 TTTCACGTTGCAAATTTGAC
*
2356760 TTTCACGTTGCGAATTTGAC
1 TTTCACGTTGCAAATTTGAC
2356780 TTTCACGTTG
1 TTTCACGTTG
2356790 ATCGCAACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (20 bp):
TTTCACGTTGCAAATTTGAC
Found at i:2359401 original size:24 final size:24
Alignment explanation
Indices: 2359364--2359419 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
2359354 CCATCATATC
* *
2359364 ATCAAAATCTGAGTATTGACCAAG
1 ATCAAAGTCCGAGTATTGACCAAG
2359388 ATCAAAGTCCGAGTATTGACCAAG
1 ATCAAAGTCCGAGTATTGACCAAG
2359412 ATCAAAGT
1 ATCAAAGT
2359420 TCGAATACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (24 bp):
ATCAAAGTCCGAGTATTGACCAAG
Found at i:2359431 original size:24 final size:24
Alignment explanation
Indices: 2359380--2359431 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
2359370 ATCTGAGTAT
* *
2359380 TGACCAAGATCAAAGTCCGAGTAT
1 TGACCAAGATCAAAGTCCGAATAC
*
2359404 TGACCAAGATCAAAGTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
2359428 TGAC
1 TGAC
2359432 TAGTACTCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.21
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:2359574 original size:12 final size:12
Alignment explanation
Indices: 2359541--2359575 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
2359531 AAGATTGTGA
*
2359541 GTTTGAGATTGT
1 GTTTGATATTGT
2359553 GTTTGATATTGT
1 GTTTGATATTGT
*
2359565 GTTTGGTATTG
1 GTTTGATATTG
2359576 GAAATGTGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.31, T:0.54
Consensus pattern (12 bp):
GTTTGATATTGT
Found at i:2360400 original size:19 final size:20
Alignment explanation
Indices: 2360359--2360416 Score: 91
Period size: 19 Copynumber: 3.0 Consensus size: 20
2360349 ACTAAAAACT
* *
2360359 GTTGCGAATTCGAAAATCTA
1 GTTGCGAATTTGAAATTCTA
2360379 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCTA
2360398 GTTGCGAATTTGAAATTCT
1 GTTGCGAATTTGAAATTCT
2360417 GCATTGCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 19 0.54
20 16 0.46
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (20 bp):
GTTGCGAATTTGAAATTCTA
Found at i:2360448 original size:20 final size:20
Alignment explanation
Indices: 2360420--2360485 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
2360410 AAATTCTGCA
*
2360420 TTGCAAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTTGTG
* * *
2360440 TTGCGAATTTGACTATCGCG
1 TTGCGAATTTGACTTTTGTG
*
2360460 TTGCGAATTTGACTTCTGTG
1 TTGCGAATTTGACTTTTGTG
2360480 TTGCGA
1 TTGCGA
2360486 TTTACACATT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.18, C:0.15, G:0.24, T:0.42
Consensus pattern (20 bp):
TTGCGAATTTGACTTTTGTG
Found at i:2360469 original size:40 final size:41
Alignment explanation
Indices: 2360398--2360485 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 41
2360388 TTGAAATTCA
*
2360398 GTTGCGAATTTGAAATTCTGCATTGCAAATTTGACTTTTGT
1 GTTGCGAATTTGAAATTCTGCATTGCAAATTTGACTTCTGT
* * *
2360439 GTTGCGAATTTG-ACTATC-GCGTTGCGAATTTGACTTCTGT
1 GTTGCGAATTTGAAAT-TCTGCATTGCAAATTTGACTTCTGT
2360479 GTTGCGA
1 GTTGCGA
2360486 TTTACACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
40 28 0.67
41 14 0.33
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (41 bp):
GTTGCGAATTTGAAATTCTGCATTGCAAATTTGACTTCTGT
Found at i:2360499 original size:40 final size:40
Alignment explanation
Indices: 2360420--2360505 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 40
2360410 AAATTCTGCA
* * *
2360420 TTGCAAATTTGACTTTTGTGTTGCGAATTTGACTATCGCG
1 TTGCGAATTTGACTTCTGTGTTGCGAATTTCACTATCGCG
2360460 TTGCGAATTTGACTTCTGTGTTGCG-ATTTACAC-ATTCGCG
1 TTGCGAATTTGACTTCTGTGTTGCGAATTT-CACTA-TCGCG
2360500 TTGCGA
1 TTGCGA
2360506 TTTACAGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
39 5 0.12
40 36 0.88
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.41
Consensus pattern (40 bp):
TTGCGAATTTGACTTCTGTGTTGCGAATTTCACTATCGCG
Found at i:2360502 original size:20 final size:20
Alignment explanation
Indices: 2360479--2360566 Score: 86
Period size: 20 Copynumber: 4.3 Consensus size: 20
2360469 TGACTTCTGT
*
2360479 GTTGCGATTTACACATTCGC
1 GTTGCGATTTACAAATTCGC
*
2360499 GTTGCGATTTACAGATTCGC
1 GTTGCGATTTACAAATTCGC
** *
2360519 GTTGCGAATTTGGAAAATCGC
1 GTTGCG-ATTTACAAATTCGC
** * *
2360540 AATGCGATTTACATATTCAC
1 GTTGCGATTTACAAATTCGC
2360560 GTTGCGA
1 GTTGCGA
2360567 AATTGGAAAC
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
20 39 0.74
21 14 0.26
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (20 bp):
GTTGCGATTTACAAATTCGC
Found at i:2363221 original size:20 final size:20
Alignment explanation
Indices: 2363001--2363229 Score: 209
Period size: 20 Copynumber: 11.2 Consensus size: 20
2362991 AATGACCAAT
* *
2363001 AAATTCGCAAAGCGAT-CTC
1 AAATTCGCAACGCGATAGTC
*
2363020 AAATTCGCAACGCGA-ATTCC
1 AAATTCGCAACGCGATAGT-C
* * *
2363040 AATTTCGCAACTC-AGT-TTCC
1 AAATTCGCAACGCGA-TAGT-C
2363060 AAATTCGCAACGCGATAGTC
1 AAATTCGCAACGCGATAGTC
*
2363080 AAATTCGCAACGCGAAAG-C
1 AAATTCGCAACGCGATAGTC
* * *
2363099 GAATTTGTAAATCGAAACACAGA-AGTC
1 --A-----AATTCGCAACGC-GATAGTC
*
2363126 AAATTCGTAACGCGATAGTC
1 AAATTCGCAACGCGATAGTC
*
2363146 AAATTCGCAATGCGATAGTC
1 AAATTCGCAACGCGATAGTC
2363166 AAATTCGCAACGCGATAGTC
1 AAATTCGCAACGCGATAGTC
2363186 AAATTCGCAACGCGATAGTC
1 AAATTCGCAACGCGATAGTC
2363206 AAATTCGCAACGCGATAGTC
1 AAATTCGCAACGCGATAGTC
2363226 AAAT
1 AAAT
2363230 GTTTTTACGC
Statistics
Matches: 177, Mismatches: 17, Indels: 31
0.79 0.08 0.14
Matches are distributed among these distances:
19 19 0.11
20 140 0.79
21 3 0.02
25 1 0.01
26 11 0.06
27 3 0.02
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.22
Consensus pattern (20 bp):
AAATTCGCAACGCGATAGTC
Found at i:2363387 original size:22 final size:22
Alignment explanation
Indices: 2363361--2363403 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
2363351 GGCGACATCC
*
2363361 GTCCCCATCTCTGACGAAATCT
1 GTCCCCATCTCCGACGAAATCT
*
2363383 GTCCCCATTTCCGACGAAATC
1 GTCCCCATCTCCGACGAAATC
2363404 CGTCTATCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.37, G:0.14, T:0.26
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCT
Found at i:2363636 original size:12 final size:12
Alignment explanation
Indices: 2363608--2363644 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
2363598 GAAGTTAGTA
*
2363608 TTTGTCTTTGT-
1 TTTGTCTTTTTG
2363619 TTTGTCTTTTTG
1 TTTGTCTTTTTG
2363631 TTTGTCTTTTTG
1 TTTGTCTTTTTG
2363643 TT
1 TT
2363645 GAAGTAACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.00, C:0.08, G:0.16, T:0.76
Consensus pattern (12 bp):
TTTGTCTTTTTG
Found at i:2363713 original size:19 final size:20
Alignment explanation
Indices: 2363673--2363715 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
2363663 AACACCAAAT
2363673 TCGCAACGCGAAAATGAAAA
1 TCGCAACGCGAAAATGAAAA
*
2363693 TCGCAACGCGAAACT-AAAA
1 TCGCAACGCGAAAATGAAAA
2363712 TCGC
1 TCGC
2363716 GTTGCGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.44, C:0.26, G:0.19, T:0.12
Consensus pattern (20 bp):
TCGCAACGCGAAAATGAAAA
Found at i:2363753 original size:20 final size:20
Alignment explanation
Indices: 2363712--2363753 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
2363702 GAAACTAAAA
* * *
2363712 TCGCGTTGCGATTTTCATTT
1 TCGCGTTGCGAATTTAAGTT
2363732 TCGCGTTGCGAATTTAAGTT
1 TCGCGTTGCGAATTTAAGTT
2363752 TC
1 TC
2363754 AGAAACTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.14, C:0.19, G:0.21, T:0.45
Consensus pattern (20 bp):
TCGCGTTGCGAATTTAAGTT
Found at i:2366521 original size:14 final size:14
Alignment explanation
Indices: 2366502--2366537 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
2366492 TTTGATTAAT
2366502 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
2366516 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
2366530 TGATTTGT
1 TGATTTGT
2366538 TTAATTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:2366779 original size:20 final size:20
Alignment explanation
Indices: 2366707--2366783 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 20
2366697 GATTTTCGGT
*
2366707 TTGCGAATTTGACTTTCGCG
1 TTGCGAATTTAACTTTCGCG
* * *
2366727 TTTCGAATTTAACTATCGCA
1 TTGCGAATTTAACTTTCGCG
*
2366747 ATGC----TT-A-TTTCGCG
1 TTGCGAATTTAACTTTCGCG
2366761 TTGCGAATTTAACTTTCGCG
1 TTGCGAATTTAACTTTCGCG
2366781 TTG
1 TTG
2366784 ATCGCAACAT
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
14 8 0.19
15 1 0.02
16 2 0.05
18 2 0.05
19 1 0.02
20 28 0.67
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (20 bp):
TTGCGAATTTAACTTTCGCG
Found at i:2367013 original size:39 final size:39
Alignment explanation
Indices: 2366959--2367045 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
2366949 TCAAGTTGTA
*
2366959 GATTTTGATTTCCTTTTGCTTGGTACCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
* *
2366998 GATTTTGATTTCCTTTTTCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
2367037 GATTTTGAT
1 GATTTTGAT
2367046 GAGCATCGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.17, C:0.14, G:0.20, T:0.49
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:2367363 original size:6 final size:6
Alignment explanation
Indices: 2367352--2367414 Score: 90
Period size: 6 Copynumber: 10.5 Consensus size: 6
2367342 ATTTATATTG
* * *
2367352 AAATTC AAATTC AAACTC AAATTC AAATTC AAATTC AAACTC AAATTG
1 AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC
*
2367400 AAATTT AAATTC AAA
1 AAATTC AAATTC AAA
2367415 CTCCAATTAC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.52, C:0.16, G:0.02, T:0.30
Consensus pattern (6 bp):
AAATTC
Found at i:2367371 original size:12 final size:12
Alignment explanation
Indices: 2367356--2367422 Score: 89
Period size: 12 Copynumber: 5.6 Consensus size: 12
2367346 ATATTGAAAT
2367356 TCAAATTCAAAC
1 TCAAATTCAAAC
*
2367368 TCAAATTCAAAT
1 TCAAATTCAAAC
2367380 TCAAATTCAAAC
1 TCAAATTCAAAC
* *
2367392 TCAAATTGAAAT
1 TCAAATTCAAAC
*
2367404 TTAAATTCAAAC
1 TCAAATTCAAAC
*
2367416 TCCAATT
1 TCAAATT
2367423 ACATATGAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 46 1.00
ACGTcount: A:0.48, C:0.19, G:0.01, T:0.31
Consensus pattern (12 bp):
TCAAATTCAAAC
Found at i:2367384 original size:24 final size:24
Alignment explanation
Indices: 2367352--2367422 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
2367342 ATTTATATTG
2367352 AAATTCAAATTCAAACTCAAATTC
1 AAATTCAAATTCAAACTCAAATTC
*
2367376 AAATTCAAATTCAAACTCAAATTG
1 AAATTCAAATTCAAACTCAAATTC
* *
2367400 AAATTTAAATTCAAACTCCAATT
1 AAATTCAAATTCAAACTCAAATT
2367423 ACATATGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.49, C:0.18, G:0.01, T:0.31
Consensus pattern (24 bp):
AAATTCAAATTCAAACTCAAATTC
Found at i:2367433 original size:24 final size:24
Alignment explanation
Indices: 2367356--2367433 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
2367346 ATATTGAAAT
*
2367356 TCAAATTCAAACTCAAATT-CAAA
1 TCAAATTCAAACTCAAATTACATA
*
2367379 TTCAAATTCAAACTCAAATTGAAAT-
1 -TCAAATTCAAACTCAAATT-ACATA
* *
2367404 TTAAATTCAAACTCCAATTACATA
1 TCAAATTCAAACTCAAATTACATA
*
2367428 TGAAAT
1 TCAAAT
2367434 GAATTTGAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
23 3 0.07
24 41 0.91
26 1 0.02
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.31
Consensus pattern (24 bp):
TCAAATTCAAACTCAAATTACATA
Found at i:2367835 original size:25 final size:25
Alignment explanation
Indices: 2367801--2367850 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
2367791 ATTATTTTTC
*
2367801 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
2367826 CAAATAATGTACCCACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
2367851 TAATTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:2367993 original size:20 final size:20
Alignment explanation
Indices: 2367968--2368013 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
2367958 TTACGATTTT
*
2367968 GCGTTGCGAATTTGTCTTTC
1 GCGTTGCGAATTTGACTTTC
2367988 GCGTTGCGAATTTGACTTTC
1 GCGTTGCGAATTTGACTTTC
*
2368008 GTGTTG
1 GCGTTG
2368014 ATCGCAACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.17, G:0.28, T:0.43
Consensus pattern (20 bp):
GCGTTGCGAATTTGACTTTC
Found at i:2368322 original size:18 final size:18
Alignment explanation
Indices: 2368299--2368334 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2368289 AAGCCAGTTG
*
2368299 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
2368317 TGATTGCGATTTTGATTT
1 TGATTGCGATTTTGATTT
2368335 CCTTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:2370654 original size:24 final size:24
Alignment explanation
Indices: 2370608--2370654 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
2370598 CAAAATCCAA
*
2370608 GTATTGACCAATATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
* *
2370632 GTATTGACCAAGATTAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
2370655 AATGCCGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:2371579 original size:20 final size:20
Alignment explanation
Indices: 2371543--2371893 Score: 159
Period size: 20 Copynumber: 17.6 Consensus size: 20
2371533 ACTAAAACCT
*
2371543 GTTGCGAAATT-AAATTCGC
1 GTTGCGAATTTGAAATTCGC
* *
2371562 ATTGCGAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCGC
**
2371581 GTTGCGAATTTGACTTTCGC
1 GTTGCGAATTTGAAATTCGC
* *
2371601 GTTGCGCATTTG-ACTATCGC
1 GTTGCGAATTTGAAAT-TCGC
* * **
2371621 GTTGCGCATTTG-ACTATCAT
1 GTTGCGAATTTGAAAT-TCGC
*
2371641 GTTGCGAATTTGGAAAATCGC
1 GTTGCGAATTT-GAAATTCGC
*** *
2371662 AACGCG-ATTT-ACATATCCGC
1 GTTGCGAATTTGA-A-ATTCGC
* * *
2371682 GTTGCGAAATTAGAAACT-GG
1 GTTGCG-AATTTGAAATTCGC
* *
2371702 GTTGCGAAATTGGAATTCGC
1 GTTGCGAATTTGAAATTCGC
*
2371722 GTTGCGAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCGC
**
2371741 GTTGCGAATTTGACTTTCGC
1 GTTGCGAATTTGAAATTCGC
* **
2371761 GTTGTGAATTTGACTTTCGC
1 GTTGCGAATTTGAAATTCGC
* **
2371781 GTTGCGAATTTG-ACTATCAT
1 GTTGCGAATTTGAAAT-TCGC
*
2371801 GTTGCGAATTTGGAAAATCGC
1 GTTGCGAATTT-GAAATTCGC
***
2371822 AACGCG-ATTT-ACATATTCGC
1 GTTGCGAATTTGA-A-ATTCGC
* * *
2371842 GTTGCGAAATTGGACATT-GG
1 GTTGCG-AATTTGAAATTCGC
* * *
2371862 GTTACGAAATTGGAATTCGC
1 GTTGCGAATTTGAAATTCGC
2371882 GTTGCGAATTTG
1 GTTGCGAATTTG
2371894 TTGGTCATTT
Statistics
Matches: 243, Mismatches: 68, Indels: 41
0.69 0.19 0.12
Matches are distributed among these distances:
18 2 0.01
19 58 0.24
20 156 0.64
21 16 0.07
22 9 0.04
23 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (20 bp):
GTTGCGAATTTGAAATTCGC
Found at i:2371810 original size:40 final size:40
Alignment explanation
Indices: 2371558--2371821 Score: 191
Period size: 40 Copynumber: 6.6 Consensus size: 40
2371548 GAAATTAAAT
* * *
2371558 TCGCATTGCGAATTTGAAATTC-AGTTGCGAATTTGACTT
1 TCGCGTTGCGAATTTGAAATTCGCGTTGCGAATTTGACTA
* * *
2371597 TCGCGTTGCGCATTTG-ACTATCGCGTTGCGCATTTGACTA
1 TCGCGTTGCGAATTTGAAAT-TCGCGTTGCGAATTTGACTA
** * ***
2371637 TCATGTTGCGAATTTGGAAAATCGCAACGCG-ATTT-ACATA
1 TCGCGTTGCGAATTT-GAAATTCGCGTTGCGAATTTGAC-TA
* * * * *
2371677 TCCGCGTTGCGAAATTAGAAACT-GGGTTGCGAAATTGGAAT-
1 T-CGCGTTGCG-AATTTGAAATTCGCGTTGCG-AATTTGACTA
* *
2371718 TCGCGTTGCGAATTTGAAATTC-AGTTGCGAATTTGACTT
1 TCGCGTTGCGAATTTGAAATTCGCGTTGCGAATTTGACTA
* **
2371757 TCGCGTTGTGAATTTGACTTTCGCGTTGCGAATTTGACTA
1 TCGCGTTGCGAATTTGAAATTCGCGTTGCGAATTTGACTA
** *
2371797 TCATGTTGCGAATTTGGAAAATCGC
1 TCGCGTTGCGAATTT-GAAATTCGC
2371822 AACGCGATTT
Statistics
Matches: 171, Mismatches: 40, Indels: 26
0.72 0.17 0.11
Matches are distributed among these distances:
38 9 0.05
39 52 0.30
40 73 0.43
41 27 0.16
42 9 0.05
43 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (40 bp):
TCGCGTTGCGAATTTGAAATTCGCGTTGCGAATTTGACTA
Found at i:2371819 original size:160 final size:160
Alignment explanation
Indices: 2371543--2371893 Score: 596
Period size: 160 Copynumber: 2.2 Consensus size: 160
2371533 ACTAAAACCT
* *
2371543 GTTGCGAAATT-AAATTCGCATTGCGAATTTGAAATTCAGTTGCGAATTTGACTTTCGCGTTGCG
1 GTTGCGAAATTGGAATTCGCGTTGCGAATTTGAAATTCAGTTGCGAATTTGACTTTCGCGTTGCG
* *
2371607 CATTTGACTATCGCGTTGCGCATTTGACTATCATGTTGCGAATTTGGAAAATCGCAACGCGATTT
66 AATTTGACTATCGCGTTGCGAATTTGACTATCATGTTGCGAATTTGGAAAATCGCAACGCGATTT
2371672 ACATATCCGCGTTGCGAAATTAGAAACTGG
131 ACATATCCGCGTTGCGAAATTAGAAACTGG
*
2371702 GTTGCGAAATTGGAATTCGCGTTGCGAATTTGAAATTCAGTTGCGAATTTGACTTTCGCGTTGTG
1 GTTGCGAAATTGGAATTCGCGTTGCGAATTTGAAATTCAGTTGCGAATTTGACTTTCGCGTTGCG
*
2371767 AATTTGACTTTCGCGTTGCGAATTTGACTATCATGTTGCGAATTTGGAAAATCGCAACGCGATTT
66 AATTTGACTATCGCGTTGCGAATTTGACTATCATGTTGCGAATTTGGAAAATCGCAACGCGATTT
* * * *
2371832 ACATATTCGCGTTGCGAAATTGGACATTGG
131 ACATATCCGCGTTGCGAAATTAGAAACTGG
*
2371862 GTTACGAAATTGGAATTCGCGTTGCGAATTTG
1 GTTGCGAAATTGGAATTCGCGTTGCGAATTTG
2371894 TTGGTCATTT
Statistics
Matches: 180, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
159 11 0.06
160 169 0.94
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (160 bp):
GTTGCGAAATTGGAATTCGCGTTGCGAATTTGAAATTCAGTTGCGAATTTGACTTTCGCGTTGCG
AATTTGACTATCGCGTTGCGAATTTGACTATCATGTTGCGAATTTGGAAAATCGCAACGCGATTT
ACATATCCGCGTTGCGAAATTAGAAACTGG
Found at i:2376285 original size:31 final size:31
Alignment explanation
Indices: 2376247--2376308 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
2376237 AAGTGTTTTA
2376247 TACGAGCTGTGGCGAGAGGATGAAGCTTTGC
1 TACGAGCTGTGGCGAGAGGATGAAGCTTTGC
*
2376278 TACGAGCTGTGGTGAGAGGATGAAGCTTTGC
1 TACGAGCTGTGGCGAGAGGATGAAGCTTTGC
2376309 ATGCGCCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.15, G:0.39, T:0.24
Consensus pattern (31 bp):
TACGAGCTGTGGCGAGAGGATGAAGCTTTGC
Found at i:2376365 original size:21 final size:22
Alignment explanation
Indices: 2376312--2376365 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
2376302 GCTTTGCATG
*
2376312 CGCCATGCACGTCGGAAGAGGT
1 CGCCATGCACGTCGGAAGAGAT
*
2376334 TGCCATGCACGTCGGAAGAGAT
1 CGCCATGCACGTCGGAAGAGAT
2376356 CGCC-TGCACG
1 CGCCATGCACG
2376366 CAGTGGGGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 6 0.21
22 23 0.79
ACGTcount: A:0.22, C:0.30, G:0.33, T:0.15
Consensus pattern (22 bp):
CGCCATGCACGTCGGAAGAGAT
Found at i:2376475 original size:29 final size:28
Alignment explanation
Indices: 2376409--2376504 Score: 111
Period size: 29 Copynumber: 3.3 Consensus size: 28
2376399 AGGGCGCAGA
*
2376409 ACAAGGTCGCCCAGCGTGCATGGCGACCT
1 ACAAGGTCG-CCGGCGTGCATGGCGACCT
* *
2376438 ACCATGTCGCCTGGCGTGCATGGCGACCT
1 ACAAGGTCGCC-GGCGTGCATGGCGACCT
* * *
2376467 ACAAGGTCGTCCGGAGGGCATGACGACCT
1 ACAAGGTCG-CCGGCGTGCATGGCGACCT
2376496 ACAAGGTCG
1 ACAAGGTCG
2376505 TCAGGAGGGC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
28 2 0.04
29 53 0.93
30 2 0.04
ACGTcount: A:0.21, C:0.31, G:0.32, T:0.16
Consensus pattern (28 bp):
ACAAGGTCGCCGGCGTGCATGGCGACCT
Found at i:2376505 original size:29 final size:29
Alignment explanation
Indices: 2376455--2376526 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
2376445 CGCCTGGCGT
* *
2376455 GCATGGCGACCTACAAGGTCGTCCGGAGG
1 GCATGACGACCTACAAGGTCGTCAGGAGG
2376484 GCATGACGACCTACAAGGTCGTCAGGAGG
1 GCATGACGACCTACAAGGTCGTCAGGAGG
2376513 GCAT-ATCGACCTAC
1 GCATGA-CGACCTAC
2376527 GACCAATGCT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.25, C:0.28, G:0.32, T:0.15
Consensus pattern (29 bp):
GCATGACGACCTACAAGGTCGTCAGGAGG
Found at i:2377993 original size:2 final size:2
Alignment explanation
Indices: 2377988--2378024 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
2377978 ACACACACAA
*
2377988 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2378025 CATACACACC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:2378029 original size:10 final size:10
Alignment explanation
Indices: 2377990--2378030 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
2377980 ACACACAAAT
*
2377990 ATATATATAT
1 ATATATATAC
*
2378000 ATATATATAT
1 ATATATATAC
2378010 ATATATATAC
1 ATATATATAC
*
2378020 ATATACATAC
1 ATATATATAC
2378030 A
1 A
2378031 CACCAAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATATAC
Found at i:2380262 original size:3 final size:3
Alignment explanation
Indices: 2380254--2380280 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2380244 CCATTATCTT
2380254 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
2380281 CTGCTACTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:2381280 original size:14 final size:14
Alignment explanation
Indices: 2381257--2381289 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2381247 TTTTTTTTTC
2381257 AAAT-GGACAATTT
1 AAATGGGACAATTT
2381270 AAATGGGACAATTT
1 AAATGGGACAATTT
*
2381284 TAATGG
1 AAATGG
2381290 AATAGAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (14 bp):
AAATGGGACAATTT
Found at i:2388901 original size:32 final size:30
Alignment explanation
Indices: 2388860--2388973 Score: 95
Period size: 32 Copynumber: 3.5 Consensus size: 30
2388850 AACGATGAGT
2388860 TTAACGAGCAACGAGTCGAGTAACAAATTTTC
1 TTAACGAGC-ACGAGTCGAG-AACAAATTTTC
* * *
2388892 TTAACGAGCATGGGTCGAGCA-AAATTTTAAC
1 TTAACGAGCACGAGTCGAGAACAAATTTT--C
*
2388923 GAGTTTAACGAGCAATGAGTCGAGCAACAAATTTTC
1 ----TTAACGAGC-ACGAGTCGAG-AACAAATTTTC
2388959 TTAACGAGCACGAGT
1 TTAACGAGCACGAGT
2388974 TGAACAAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 19
0.73 0.07 0.21
Matches are distributed among these distances:
29 7 0.10
30 1 0.01
31 14 0.21
32 18 0.27
35 9 0.13
36 10 0.15
37 1 0.01
38 7 0.10
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (30 bp):
TTAACGAGCACGAGTCGAGAACAAATTTTC
Found at i:2388982 original size:67 final size:67
Alignment explanation
Indices: 2388856--2388985 Score: 206
Period size: 67 Copynumber: 1.9 Consensus size: 67
2388846 GGCAAACGAT
* * * *
2388856 GAGTTTAACGAGCAACGAGTCGAGTAACAAATTTTCTTAACGAGCATGGGTCGAGCAAAATTTTA
1 GAGTTTAACGAGCAACGAGTCGAGCAACAAATTTTCTTAACGAGCACGAGTCGAACAAAATTTTA
2388921 AC
66 AC
* *
2388923 GAGTTTAACGAGCAATGAGTCGAGCAACAAATTTTCTTAACGAGCACGAGTTGAACAAAATTT
1 GAGTTTAACGAGCAACGAGTCGAGCAACAAATTTTCTTAACGAGCACGAGTCGAACAAAATTT
2388986 AGTGAACTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (67 bp):
GAGTTTAACGAGCAACGAGTCGAGCAACAAATTTTCTTAACGAGCACGAGTCGAACAAAATTTTA
AC
Found at i:2389450 original size:14 final size:14
Alignment explanation
Indices: 2389418--2389455 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
2389408 TTGAAGATTT
* *
2389418 ATAACATAAGAATC
1 ATAATATAATAATC
2389432 ATAATATAATAATC
1 ATAATATAATAATC
2389446 ATAAT-TAATA
1 ATAATATAATA
2389456 TAAGAAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (14 bp):
ATAATATAATAATC
Found at i:2389456 original size:18 final size:18
Alignment explanation
Indices: 2389433--2389495 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
2389423 ATAAGAATCA
2389433 TAATATAATAATCATAAT
1 TAATATAATAATCATAAT
* *
2389451 TAATATAAGAAATCTATTTAT
1 TAATATAA-TAATC-A-TAAT
* *
2389472 TAATTTAATTATCATAAT
1 TAATATAATAATCATAAT
2389490 TAATAT
1 TAATAT
2389496 TTTATTATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 16 0.46
19 5 0.14
20 4 0.11
21 10 0.29
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (18 bp):
TAATATAATAATCATAAT
Found at i:2391218 original size:11 final size:11
Alignment explanation
Indices: 2391191--2391221 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
2391181 CATTAAACTC
2391191 TTAAAATTTTG
1 TTAAAATTTTG
2391202 -TAAAATTTTG
1 TTAAAATTTTG
2391212 TTAAAATTTT
1 TTAAAATTTT
2391222 AAGATGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (11 bp):
TTAAAATTTTG
Found at i:2412690 original size:63 final size:65
Alignment explanation
Indices: 2412544--2412700 Score: 205
Period size: 63 Copynumber: 2.5 Consensus size: 65
2412534 TTGAAGGTGT
*
2412544 ACCGATGCACAAGTAGTGCATCGATGCA-CTTCTTAATAATAGAAACATCGAATGCAATTAGTGC
1 ACCGATGCACAAGTAGTGCATCGATGCATCTCCTTAATAATAGAAACATCGAATGCAATTAGTGC
* * * ** * *
2412608 ATCAATGCATAAGGCGTGCATCGATGCATC-CCTTAAT-ATTGAAACATCGAATGCATTTTA-TG
1 ACCGATGCACAAGTAGTGCATCGATGCATCTCCTTAATAATAGAAACATCGAATGCA-ATTAGTG
2412670 C
65 C
2412671 ACCGATGCACAAGTAGTGCATCGATGCATC
1 ACCGATGCACAAGTAGTGCATCGATGCATC
2412701 GTTAAAGAAT
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
63 45 0.58
64 32 0.41
65 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (65 bp):
ACCGATGCACAAGTAGTGCATCGATGCATCTCCTTAATAATAGAAACATCGAATGCAATTAGTGC
Found at i:2412733 original size:43 final size:43
Alignment explanation
Indices: 2412685--2412785 Score: 184
Period size: 43 Copynumber: 2.3 Consensus size: 43
2412675 ATGCACAAGT
2412685 AGTGCATCGATGCATCGTTAAAGAATACATCGATACACTGTAG
1 AGTGCATCGATGCATCGTTAAAGAATACATCGATACACTGTAG
* *
2412728 AGTGCATCGATGCACCGTTAAAGAATGCATCGATACACTGTAG
1 AGTGCATCGATGCATCGTTAAAGAATACATCGATACACTGTAG
2412771 AGTGCATCGATGCAT
1 AGTGCATCGATGCAT
2412786 ACCTTCATTG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (43 bp):
AGTGCATCGATGCATCGTTAAAGAATACATCGATACACTGTAG
Found at i:2412737 original size:20 final size:20
Alignment explanation
Indices: 2412712--2412781 Score: 86
Period size: 20 Copynumber: 3.4 Consensus size: 20
2412702 TTAAAGAATA
2412712 CATCGATACACTGTAGAGTG
1 CATCGATACACTGTAGAGTG
* * *
2412732 CATCGATGCACCGTTAAAGAATG
1 CATCGATACACTG-T--AGAGTG
2412755 CATCGATACACTGTAGAGTG
1 CATCGATACACTGTAGAGTG
2412775 CATCGAT
1 CATCGAT
2412782 GCATACCTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
20 23 0.56
21 1 0.02
22 1 0.02
23 16 0.39
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (20 bp):
CATCGATACACTGTAGAGTG
Found at i:2412760 original size:23 final size:23
Alignment explanation
Indices: 2412687--2412761 Score: 84
Period size: 23 Copynumber: 3.4 Consensus size: 23
2412677 GCACAAGTAG
*
2412687 TGCATCGATGCATCGTTAAAGAA
1 TGCATCGATGCACCGTTAAAGAA
* * * *
2412710 TACATCGATACACTG-T--AGAG
1 TGCATCGATGCACCGTTAAAGAA
2412730 TGCATCGATGCACCGTTAAAGAA
1 TGCATCGATGCACCGTTAAAGAA
2412753 TGCATCGAT
1 TGCATCGAT
2412762 ACACTGTAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
20 15 0.38
21 1 0.03
22 1 0.03
23 23 0.57
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.25
Consensus pattern (23 bp):
TGCATCGATGCACCGTTAAAGAA
Found at i:2414540 original size:19 final size:19
Alignment explanation
Indices: 2414499--2414541 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
2414489 ATATACAGAA
*
2414499 ATGATAAATACAAGATTAT
1 ATGATAAATACAAGATTAG
*
2414518 ATGATAAATA-GAGATTTAG
1 ATGATAAATACAAGA-TTAG
2414537 ATGAT
1 ATGAT
2414542 GGTATATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.49, C:0.02, G:0.16, T:0.33
Consensus pattern (19 bp):
ATGATAAATACAAGATTAG
Found at i:2419011 original size:21 final size:21
Alignment explanation
Indices: 2418985--2419025 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
2418975 GACTATAGCA
*
2418985 TTGCGATTTTCCAAATTCGCG
1 TTGCGATTTTCCAAAATCGCG
2419006 TTGCGATTTTCCAAAATCGC
1 TTGCGATTTTCCAAAATCGC
2419026 AATGCGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (21 bp):
TTGCGATTTTCCAAAATCGCG
Found at i:2419031 original size:21 final size:21
Alignment explanation
Indices: 2418986--2419032 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
2418976 ACTATAGCAT
* **
2418986 TGCGATTTTCCAAATTCGCGT
1 TGCGATTTTCCAAAATCGCAA
2419007 TGCGATTTTCCAAAATCGCAA
1 TGCGATTTTCCAAAATCGCAA
2419028 TGCGA
1 TGCGA
2419033 ATATGTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (21 bp):
TGCGATTTTCCAAAATCGCAA
Found at i:2419073 original size:20 final size:20
Alignment explanation
Indices: 2419044--2419168 Score: 69
Period size: 20 Copynumber: 6.2 Consensus size: 20
2419034 TATGTAAATT
*
2419044 GCAACACGATTCTGACTATC
1 GCAACGCGATTCTGACTATC
* *
2419064 GCAACGCGA-TCTCCAGTATC
1 GCAACGCGATTCT-GACTATC
** * *
2419084 GCAAATCAGTTTCCAGA-T-TC
1 GCAACGC-GATT-CTGACTATC
* *
2419104 GCAACGCGATTTTGACTATT
1 GCAACGCGATTCTGACTATC
* * * *
2419124 GCAATGCGAATATGTA-AATC
1 GCAACGCGATTCTG-ACTATC
2419144 GCAACGCGATTCTGACTATC
1 GCAACGCGATTCTGACTATC
2419164 GCAAC
1 GCAAC
2419169 ACAATCTCCA
Statistics
Matches: 74, Mismatches: 23, Indels: 16
0.65 0.20 0.14
Matches are distributed among these distances:
18 2 0.03
19 8 0.11
20 58 0.78
21 3 0.04
22 2 0.03
23 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (20 bp):
GCAACGCGATTCTGACTATC
Found at i:2419146 original size:40 final size:40
Alignment explanation
Indices: 2419102--2419240 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 40
2419092 GTTTCCAGAT
*
2419102 TCGCAACGCGATTTTGACTATTGCAATGCGAATATGTAAA
1 TCGCAACGCGATTTTGACTATCGCAATGCGAATATGTAAA
* ** * *
2419142 TCGCAACGCGATTCTGACTATCGCAACAC-AATCTCCAATTTTCAGAT
1 TCGCAACGCGATTTTGACTATCGCAATGCGAA--T---A-TGT-A-AA
2419189 TCGCAACGCGATTTTGACTATCGCAATGCGAATATGTAAA
1 TCGCAACGCGATTTTGACTATCGCAATGCGAATATGTAAA
2419229 TCGCAACGCGAT
1 TCGCAACGCGAT
2419241 AATACAAAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
39 2 0.03
40 38 0.48
41 2 0.03
42 2 0.03
43 1 0.01
44 1 0.01
45 2 0.03
46 2 0.03
47 27 0.34
48 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (40 bp):
TCGCAACGCGATTTTGACTATCGCAATGCGAATATGTAAA
Found at i:2419704 original size:19 final size:19
Alignment explanation
Indices: 2419680--2419769 Score: 81
Period size: 19 Copynumber: 4.4 Consensus size: 19
2419670 TTATTTTGGA
*
2419680 TTTTTCACTATCGGAACAC
1 TTTTTCACTATCGCAACAC
2419699 TTTTTCACTATCGCAACAACAC
1 TTTTTCACTATCG---CAACAC
*
2419721 GTTTTTCAAACTCTCGCAACAC
1 -TTTTTC--ACTATCGCAACAC
* *
2419743 ATTTTAACTATCGCAACAC
1 TTTTTCACTATCGCAACAC
2419762 ATTTTTCA
1 -TTTTTCA
2419770 AAATCGCGTT
Statistics
Matches: 57, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
19 25 0.44
20 5 0.09
21 4 0.07
22 11 0.19
23 6 0.11
25 6 0.11
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.36
Consensus pattern (19 bp):
TTTTTCACTATCGCAACAC
Found at i:2424563 original size:36 final size:36
Alignment explanation
Indices: 2424492--2424564 Score: 87
Period size: 36 Copynumber: 2.0 Consensus size: 36
2424482 GTTGGAAAAT
*
2424492 ATTTATATATTTTATTTAAAAAAATAAATTCATAAA
1 ATTTATATATTTTATTTAAAAAAATAAAATCATAAA
* *
2424528 ATTTATATAATTTT-TTTACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTATTTAAAAAAAT-AAAATCATAAA
2424564 A
1 A
2424565 AGGTTTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 23 0.72
37 9 0.28
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (36 bp):
ATTTATATATTTTATTTAAAAAAATAAAATCATAAA
Found at i:2425368 original size:3 final size:3
Alignment explanation
Indices: 2425360--2425398 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
2425350 TCTATTTAGC
2425360 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2425399 GACAAATTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:2430133 original size:29 final size:29
Alignment explanation
Indices: 2430070--2430142 Score: 96
Period size: 30 Copynumber: 2.6 Consensus size: 29
2430060 TTTATTTAAG
2430070 TATTTAAAATA-TTTTTAATTAAAATAAA
1 TATTTAAAATATTTTTTAATTAAAATAAA
* * *
2430098 TATTTAAATTTATTTTTTAGTTAAAATAGA
1 TATTTAAA-ATATTTTTTAATTAAAATAAA
2430128 TA-TTAAAATATTTTT
1 TATTTAAAATATTTTT
2430143 GGTTCCTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 15 0.38
29 7 0.18
30 17 0.44
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (29 bp):
TATTTAAAATATTTTTTAATTAAAATAAA
Found at i:2430278 original size:31 final size:30
Alignment explanation
Indices: 2430243--2430310 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 30
2430233 TTTTTATATC
*
2430243 AAAAAAT-ATTTTACATATTTATTTTGACCA
1 AAAAAATAAGTTTACATATTTATTTTGA-CA
* *
2430273 AAAAAATAAGTTTAGATATTTATTTTGATA
1 AAAAAATAAGTTTACATATTTATTTTGACA
2430303 AAAAAATA
1 AAAAAATA
2430311 CTTTAGATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 16 0.47
31 18 0.53
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (30 bp):
AAAAAATAAGTTTACATATTTATTTTGACA
Found at i:2430901 original size:19 final size:19
Alignment explanation
Indices: 2430877--2430939 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
2430867 AAAATCAATT
2430877 ATTATTATGTAAAAAAATA
1 ATTATTATGTAAAAAAATA
* *
2430896 ATTATTA---AAAATCAATT
1 ATTATTATGTAAAA-AAATA
* *
2430913 ATTATTATGTCAAAATATA
1 ATTATTATGTAAAAAAATA
2430932 ATTATTAT
1 ATTATTAT
2430940 TTGACATCTA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
16 4 0.12
17 10 0.29
19 17 0.50
20 3 0.09
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (19 bp):
ATTATTATGTAAAAAAATA
Found at i:2430905 original size:36 final size:36
Alignment explanation
Indices: 2430864--2430938 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
2430854 TATCAGTAAT
2430864 TTAAAAATCAATTATTATTATGTAAAAAAATAATTA
1 TTAAAAATCAATTATTATTATGTAAAAAAATAATTA
* *
2430900 TTAAAAATCAATTATTATTATGTCAAAATATAATTA
1 TTAAAAATCAATTATTATTATGTAAAAAAATAATTA
2430936 TTA
1 TTA
2430939 TTTGACATCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (36 bp):
TTAAAAATCAATTATTATTATGTAAAAAAATAATTA
Found at i:2434072 original size:63 final size:64
Alignment explanation
Indices: 2434003--2434122 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 64
2433993 ATGCACAGGA
* *
2434003 AGTGCATCGATGCA-CCTATTAAAAT-AGAAACATCGAATGCAATTGGTGCATCGATGTATAAGG
1 AGTGCATCGATGCATCCCATTAAAATGA-AAACATCGAAGGCAATTGGTGCATCGATGTATAAGG
* ** *
2434066 AGTGCATCGATGCATCCCCTTAAAATGAAAACATCGAAGGTGATTTGTGCATCGATG
1 AGTGCATCGATGCATCCCATTAAAATGAAAACATCGAAGGCAATTGGTGCATCGATG
2434123 CACATGCTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
63 14 0.29
64 34 0.69
65 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (64 bp):
AGTGCATCGATGCATCCCATTAAAATGAAAACATCGAAGGCAATTGGTGCATCGATGTATAAGG
Found at i:2434145 original size:24 final size:20
Alignment explanation
Indices: 2434113--2434170 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
2434103 AGGTGATTTG
2434113 TGCATCGATGCACATGCTAAAGAA
1 TGCATCGATGCAC-TG-T--AGAA
*
2434137 TGCATCGATGCACTGTTGAA
1 TGCATCGATGCACTGTAGAA
2434157 TGCATCGATGCACT
1 TGCATCGATGCACT
2434171 TCAAGGGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 17 0.52
22 1 0.03
23 2 0.06
24 13 0.39
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (20 bp):
TGCATCGATGCACTGTAGAA
Found at i:2435351 original size:30 final size:30
Alignment explanation
Indices: 2435281--2435353 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
2435271 GGTTCTTCGG
* *
2435281 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
2435311 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
2435341 GACCTCTGGATAG
1 GACCTCTGGATAG
2435354 GTCCTTCGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:2438890 original size:64 final size:63
Alignment explanation
Indices: 2438776--2438897 Score: 165
Period size: 64 Copynumber: 1.9 Consensus size: 63
2438766 ATGCACAGGA
* * *
2438776 AGTGCATCGATGCACCTATTAAAATGGAAATATCGAATGCAATTGGTGCATCGATGCATAAGG
1 AGTGCATCGATGCACCCATTAAAATGAAAACATCGAATGCAATTGGTGCATCGATGCATAAGG
* * *
2438839 AGTGCATCGATGCATCCCCTTAAAATGAAAACATCGAA-GGATATTTGTGCATCGATGCA
1 AGTGCATCGATGCA-CCCATTAAAATGAAAACATCGAATGCA-ATTGGTGCATCGATGCA
2438898 CGGGTACTGC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
63 16 0.31
64 35 0.69
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (63 bp):
AGTGCATCGATGCACCCATTAAAATGAAAACATCGAATGCAATTGGTGCATCGATGCATAAGG
Found at i:2438909 original size:64 final size:63
Alignment explanation
Indices: 2438778--2438917 Score: 158
Period size: 64 Copynumber: 2.2 Consensus size: 63
2438768 GCACAGGAAG
* * * *
2438778 TGCATCGATGCACCTATTAAAATGGAAATATCGAATGCAATTGGTGCATCGATGCATAAGGAG
1 TGCATCGATGCACCCATTAAAATGAAAACATCGAATGCAATTGGTGCATCGATGCATAAGGAC
* * * **
2438841 TGCATCGATGCATCCCCTTAAAATGAAAACATCGAA-GGATATTTGTGCATCGATGCA-CGGGTA
1 TGCATCGATGCA-CCCATTAAAATGAAAACATCGAATGCA-ATTGGTGCATCGATGCATAAGG-A
2438904 C
63 C
2438905 TGCATCGATGCAC
1 TGCATCGATGCAC
2438918 ATGCTAAAGA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
63 17 0.26
64 48 0.74
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (63 bp):
TGCATCGATGCACCCATTAAAATGAAAACATCGAATGCAATTGGTGCATCGATGCATAAGGAC
Found at i:2439449 original size:2 final size:2
Alignment explanation
Indices: 2439442--2439487 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
2439432 CATGTTACAG
2439442 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2439483 TA TA T
1 TA TA T
2439488 GAGTTGTGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2440112 original size:31 final size:31
Alignment explanation
Indices: 2440033--2440114 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 31
2440023 ACCTATGTCT
* * * *
2440033 TTCGAGACATATGGACAGTATACCTATGTTC
1 TTCGGGACATATGGATAGTTTACCTAGGTTC
** * * *
2440064 TAAGGAATATATAGATAGTTTACCTAGGTTC
1 TTCGGGACATATGGATAGTTTACCTAGGTTC
2440095 TTCGGGACATATGGATAGTT
1 TTCGGGACATATGGATAGTT
2440115 ACCGAGGATC
Statistics
Matches: 37, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.34
Consensus pattern (31 bp):
TTCGGGACATATGGATAGTTTACCTAGGTTC
Found at i:2440140 original size:30 final size:30
Alignment explanation
Indices: 2440106--2440172 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
2440096 TCGGGACATA
*
2440106 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCAAGGATCTTTATGACCTC
*
2440136 TGGATAGTTACTAAGGATCTTTATGACCTC
1 TGGATAGTTACCAAGGATCTTTATGACCTC
2440166 TGGATAG
1 TGGATAG
2440173 GTCCTTCGGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (30 bp):
TGGATAGTTACCAAGGATCTTTATGACCTC
Done.