genome.fa.s8485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008485.1 Hibiscus syriacus cultivar Beakdansim tig00111319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  259404

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11192--11229	2	19.0	2	100	0	76	50	0	0	50	1.00
26597--26627	14	2.2	14	100	0	62	74	0	19	6	1.03
28655--28704	21	2.4	21	82	0	64	24	12	24	40	1.88
57507--57554	17	2.9	17	80	17	57	14	0	27	58	1.37
61777--61818	2	21.0	2	100	0	84	50	0	0	50	1.00
70316--70352	18	2.1	18	100	0	74	10	21	16	51	1.74
77730--77794	31	2.1	31	82	0	76	32	7	15	44	1.75
77741--77804	31	2.1	31	84	0	83	26	6	17	50	1.69
80812--80900	21	4.1	21	76	11	72	33	24	14	26	1.94
81623--81764	55	2.6	55	86	0	203	32	21	16	28	1.96
82296--82320	4	6.2	4	100	0	50	76	0	24	0	0.80
86327--86460	21	6.3	21	72	14	96	35	26	14	23	1.94
87224--87301	41	1.9	41	94	0	138	21	16	23	38	1.93
87224--87286	20	3.0	22	65	21	62	20	12	25	41	1.88
91137--91166	15	2.0	15	100	0	60	33	6	26	33	1.83
91140--91178	14	2.7	15	88	4	53	33	5	25	35	1.78
91267--91343	23	3.4	22	77	8	82	20	18	24	36	1.95
93364--93407	5	8.8	5	97	0	70	45	0	13	40	1.44
93423--93463	21	2.0	21	85	0	55	48	4	2	43	1.37
93509--93541	2	16.5	2	100	0	66	48	0	0	51	1.00
93529--93615	37	2.3	38	88	6	131	39	11	6	42	1.68
99430--99464	18	1.9	18	100	0	70	17	22	34	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107590--107629	21	1.9	21	89	0	62	10	25	40	25	1.86
113903--113937	18	1.9	18	94	0	61	20	22	31	25	1.98
118012--118059	19	2.5	19	86	0	69	33	18	27	20	1.96
118871--118919	18	2.8	17	90	6	71	20	20	30	28	1.98
119311--119350	21	1.9	21	90	10	64	52	0	20	27	1.46
136456--136574	24	5.0	24	86	4	168	26	12	20	40	1.88
136690--136784	43	2.2	43	96	0	172	16	10	35	36	1.84
138889--138931	13	3.3	13	90	0	68	18	48	13	18	1.80
141496--141612	24	4.9	24	90	4	173	25	15	19	39	1.91
141730--141824	43	2.2	43	94	3	165	20	10	32	36	1.86
143910--143971	26	2.4	27	78	8	74	56	6	1	35	1.35
143943--143993	22	2.4	21	81	9	68	49	5	1	43	1.38
143972--144066	41	2.2	42	81	12	113	45	4	4	46	1.42
144031--144112	37	2.2	38	87	8	125	40	7	7	45	1.60
145319--145354	16	2.2	17	95	5	65	63	13	5	16	1.47
147046--147092	16	2.8	16	87	6	58	27	17	0	55	1.42
153465--153542	3	25.3	3	82	10	95	37	1	0	61	1.04
154797--154839	19	2.3	18	80	11	52	30	4	2	62	1.28
155521--155572	20	2.6	21	76	11	56	26	7	0	65	1.20
159282--159317	4	9.0	4	100	0	72	75	0	0	25	0.81
162514--162768	83	3.1	83	98	0	483	29	14	20	35	1.92
165476--165555	22	3.6	22	70	0	70	36	12	11	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166224--166718	76	6.5	76	96	0	857	22	21	20	35	1.96
166845--166918	3	24.3	3	83	8	96	36	1	0	62	1.04
172320--172354	14	2.5	14	100	0	70	40	22	5	31	1.78
174504--174532	13	2.2	13	100	0	58	48	0	6	44	1.29
190838--190922	3	27.7	3	90	4	134	35	1	0	63	1.02
194568--194607	20	1.9	20	85	10	53	20	10	10	60	1.57
197952--197988	12	3.2	12	96	3	67	86	0	13	0	0.57
197962--197994	17	2.0	16	94	5	57	84	0	15	0	0.61
197952--197988	11	3.3	11	92	3	56	86	0	13	0	0.57
202920--202998	22	3.6	22	86	3	97	34	13	13	37	1.85
203435--204638	113	10.6	112	93	2	1553	38	13	18	28	1.90
204965--205022	3	19.3	3	92	0	98	34	3	0	62	1.12
205018--205058	11	3.8	10	87	9	55	56	2	0	41	1.13
205466--205504	16	2.2	17	86	13	53	76	5	17	0	0.96
205468--205515	15	3.1	16	88	8	64	70	8	20	0	1.12
229406--229833	214	2.0	214	97	0	811	31	13	16	38	1.87
242687--242756	34	2.1	34	94	2	124	24	5	28	41	1.77
247756--247796	20	2.2	19	91	8	66	29	26	17	26	1.97
256093--256174	29	2.8	29	92	1	128	32	14	10	41	1.81

Tables:   1

The End!