Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008488.1 Hibiscus syriacus cultivar Beakdansim tig00111330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12876159
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 28 of 54
Found at i:6885719 original size:31 final size:27
Alignment explanation
Indices: 6885668--6885784 Score: 93
Period size: 28 Copynumber: 4.3 Consensus size: 27
6885658 ATTAATTACA
6885668 AATTATAA-ACTAT-ATTATATTAATAT
1 AATTATAATA-TATAATTATATTAATAT
*
6885694 AAGTTAATATTAATATTAATTATATTAATATT
1 AA-TT-ATAAT-ATA-TAATTATATTAATA-T
*
6885726 AATTATAATATATAATTATTTTAATATT
1 AATTATAATATATAATTATATTAATA-T
*
6885754 AATTAT-A-A-ATAGTT-TATTAATAT
1 AATTATAATATATAATTATATTAATAT
6885777 AAATTATA
1 -AATTATA
6885785 TAGGAATGAA
Statistics
Matches: 77, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
23 1 0.01
24 13 0.17
25 5 0.06
26 3 0.04
27 3 0.04
28 24 0.31
29 5 0.06
30 6 0.08
31 14 0.18
32 3 0.04
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.49
Consensus pattern (27 bp):
AATTATAATATATAATTATATTAATAT
Found at i:6885750 original size:28 final size:27
Alignment explanation
Indices: 6885704--6885784 Score: 105
Period size: 28 Copynumber: 3.1 Consensus size: 27
6885694 AAGTTAATAT
6885704 TAATATTAATTATATTAATATTAATTA
1 TAATATTAATTATATTAATATTAATTA
*
6885731 TAATATATAATTATTTTAATATTAATTA
1 TAATAT-TAATTATATTAATATTAATTA
* *
6885759 TAA-A-TAGTT-TATTAATATAAATTA
1 TAATATTAATTATATTAATATTAATTA
6885783 TA
1 TA
6885785 TAGGAATGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
24 15 0.31
25 4 0.08
27 7 0.14
28 23 0.47
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (27 bp):
TAATATTAATTATATTAATATTAATTA
Found at i:6888546 original size:18 final size:18
Alignment explanation
Indices: 6888523--6888558 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6888513 GTTCTTCTTT
6888523 TGTCCAAAGTAGCACATC
1 TGTCCAAAGTAGCACATC
6888541 TGTCCAAAGTAGCACATC
1 TGTCCAAAGTAGCACATC
6888559 CTTGGACAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (18 bp):
TGTCCAAAGTAGCACATC
Found at i:6889107 original size:3 final size:3
Alignment explanation
Indices: 6889089--6889136 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
6889079 TTTCATTAAA
* **
6889089 ATT ATT TTT AATT ATT ATT ATT ATT AAA ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6889135 AT
1 AT
6889137 ATATATATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 36 0.95
4 2 0.05
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:6892229 original size:12 final size:11
Alignment explanation
Indices: 6892202--6892240 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
6892192 TGAATTAACC
6892202 CAAATGTTATT
1 CAAATGTTATT
*
6892213 CAAATTTTATAT
1 CAAATGTTAT-T
6892225 CAAATGTTATT
1 CAAATGTTATT
*
6892236 TAAAT
1 CAAAT
6892241 TATCATTATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (11 bp):
CAAATGTTATT
Found at i:6892529 original size:23 final size:24
Alignment explanation
Indices: 6892503--6892555 Score: 90
Period size: 23 Copynumber: 2.2 Consensus size: 24
6892493 TATATAAATT
6892503 ATTTACATAAATTAAACTATA-TA
1 ATTTACATAAATTAAACTATATTA
*
6892526 ATTTATATAAATTAAACTATATTA
1 ATTTACATAAATTAAACTATATTA
6892550 ATTTAC
1 ATTTAC
6892556 GTTTAATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (24 bp):
ATTTACATAAATTAAACTATATTA
Found at i:6892841 original size:16 final size:16
Alignment explanation
Indices: 6892800--6892848 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
6892790 ATATATAAGC
6892800 CAGATAAATATCAAGT
1 CAGATAAATATCAAGT
*
6892816 CAGTTAAATATC-AGAT
1 CAGATAAATATCAAG-T
* *
6892832 CAGATCAATAACAAGT
1 CAGATAAATATCAAGT
6892848 C
1 C
6892849 GGATCATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
15 2 0.07
16 23 0.85
17 2 0.07
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.24
Consensus pattern (16 bp):
CAGATAAATATCAAGT
Found at i:6893757 original size:15 final size:15
Alignment explanation
Indices: 6893737--6893768 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6893727 TCGTTGTAAG
6893737 ATAATTTTTTAATAT
1 ATAATTTTTTAATAT
*
6893752 ATAATTTTTTTATAT
1 ATAATTTTTTAATAT
6893767 AT
1 AT
6893769 GATTATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATAATTTTTTAATAT
Found at i:6893951 original size:24 final size:24
Alignment explanation
Indices: 6893887--6893952 Score: 59
Period size: 24 Copynumber: 2.8 Consensus size: 24
6893877 TATAAAATTA
6893887 TATTATTTAAAT--TAT-TTACGTT
1 TATT-TTTAAATAATATATTACGTT
*
6893909 TATTTTTAAATAATTTATTACG-T
1 TATTTTTAAATAATATATTACGTT
* *
6893932 TATATTTTAATTCATATATTA
1 TAT-TTTTAAATAATATATTA
6893953 TTGTTGACGA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 7 0.19
22 4 0.11
23 6 0.17
24 19 0.53
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.58
Consensus pattern (24 bp):
TATTTTTAAATAATATATTACGTT
Found at i:6901947 original size:3 final size:3
Alignment explanation
Indices: 6901939--6901982 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
6901929 CTCCTCACTC
* *
6901939 TCA TCA TCA TCA TCA TCA CCA TCA TCA TCA TCA CCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
6901983 GTCGTCGTCG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.30
Consensus pattern (3 bp):
TCA
Found at i:6901963 original size:15 final size:15
Alignment explanation
Indices: 6901943--6901982 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
6901933 TCACTCTCAT
6901943 CATCATCATCATCAC
1 CATCATCATCATCAC
6901958 CATCATCATCATCAC
1 CATCATCATCATCAC
6901973 CATCATCATC
1 CATCATCATC
6901983 GTCGTCGTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.40, G:0.00, T:0.28
Consensus pattern (15 bp):
CATCATCATCATCAC
Found at i:6904057 original size:10 final size:10
Alignment explanation
Indices: 6904039--6904068 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
6904029 ATTAAAATAT
*
6904039 TAATTTATTA
1 TAATATATTA
6904049 TAATATATTA
1 TAATATATTA
6904059 TAATATATTA
1 TAATATATTA
6904069 CCTTCTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TAATATATTA
Found at i:6905602 original size:15 final size:15
Alignment explanation
Indices: 6905582--6905615 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6905572 ATGTATCTAT
6905582 TATACTTAAAATATA
1 TATACTTAAAATATA
* *
6905597 TATACTTATAATTTA
1 TATACTTAAAATATA
6905612 TATA
1 TATA
6905616 AAGTATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
TATACTTAAAATATA
Found at i:6905665 original size:2 final size:2
Alignment explanation
Indices: 6905658--6905683 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6905648 TAATTATGTG
6905658 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
6905684 CAAGTAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6906050 original size:20 final size:20
Alignment explanation
Indices: 6906025--6906190 Score: 196
Period size: 20 Copynumber: 8.2 Consensus size: 20
6906015 TATGTAAATA
6906025 GCAACACAGAAGTCAAATTC
1 GCAACACAGAAGTCAAATTC
*
6906045 GCAACACAAAAGTCAAATTC
1 GCAACACAGAAGTCAAATTC
*
6906065 GCAACGC-GATAGTCAAATTC
1 GCAACACAGA-AGTCAAATTC
*
6906085 GCAACACTGAAGTCAAATTC
1 GCAACACAGAAGTCAAATTC
*
6906105 GCAACGC-GAA-TCTGTAAA-TC
1 GCAACACAGAAGTC---AAATTC
6906125 GCAACACAGAAGTCAAATTC
1 GCAACACAGAAGTCAAATTC
*
6906145 GCAACAAAGAAGTCAAATTC
1 GCAACACAGAAGTCAAATTC
* *
6906165 GCAACACTGAATTTCAAATTC
1 GCAACACAGAA-GTCAAATTC
6906186 GCAAC
1 GCAAC
6906191 TGAATTTCAA
Statistics
Matches: 127, Mismatches: 10, Indels: 17
0.82 0.06 0.11
Matches are distributed among these distances:
18 2 0.02
19 7 0.06
20 95 0.75
21 21 0.17
22 2 0.02
ACGTcount: A:0.42, C:0.25, G:0.15, T:0.18
Consensus pattern (20 bp):
GCAACACAGAAGTCAAATTC
Found at i:6906069 original size:40 final size:39
Alignment explanation
Indices: 6906025--6906209 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 39
6906015 TATGTAAATA
6906025 GCAACACAGAAGTCAAATTCGCAACACAAAAGTCAAATTC
1 GCAACAC-GAAGTCAAATTCGCAACACAAAAGTCAAATTC
* **
6906065 GCAACGCGATAGTCAAATTCGCAACACTGAAGTCAAATTC
1 GCAACACGA-AGTCAAATTCGCAACACAAAAGTCAAATTC
* *
6906105 GCAACGCGAA-TCTGTAAA-TCGCAACACAGAAGTCAAATTC
1 GCAACACGAAGTC---AAATTCGCAACACAAAAGTCAAATTC
* * **
6906145 GCAACAAAGAAGTCAAATTCGCAACACTGAATTTCAAATTC
1 GCAAC-ACGAAGTCAAATTCGCAACAC-AAAAGTCAAATTC
* *
6906186 GCAAC-TGAATTTCAAATTCGCAAC
1 GCAACACGAA-GTCAAATTCGCAAC
6906210 TGAATTTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 18
0.81 0.08 0.12
Matches are distributed among these distances:
38 2 0.02
39 9 0.07
40 91 0.73
41 20 0.16
42 2 0.02
ACGTcount: A:0.42, C:0.24, G:0.15, T:0.19
Consensus pattern (39 bp):
GCAACACGAAGTCAAATTCGCAACACAAAAGTCAAATTC
Found at i:6906194 original size:19 final size:19
Alignment explanation
Indices: 6906157--6906266 Score: 157
Period size: 19 Copynumber: 5.6 Consensus size: 19
6906147 AACAAAGAAG
6906157 TCAAATTCGCAACACTGAATT
1 TCAAATTCGC-A-ACTGAATT
6906178 TCAAATTCGCAACTGAATT
1 TCAAATTCGCAACTGAATT
6906197 TCAAATTCGCAACTGAATT
1 TCAAATTCGCAACTGAATT
6906216 TCAAATTCGCAACTGAATT
1 TCAAATTCGCAACTGAATT
** *
6906235 TCAAATTCATAACTCGATTT
1 TCAAATTCGCAACT-GAATT
*
6906255 TCAAATTGGCAA
1 TCAAATTCGCAA
6906267 TACGAATTTA
Statistics
Matches: 82, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
19 58 0.71
20 14 0.17
21 10 0.12
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (19 bp):
TCAAATTCGCAACTGAATT
Found at i:6906201 original size:60 final size:59
Alignment explanation
Indices: 6906025--6906242 Score: 207
Period size: 60 Copynumber: 3.7 Consensus size: 59
6906015 TATGTAAATA
* ** *
6906025 GCAACACAGAAGTCAAATTCGCAACACAAAAGTCAAATTCGCAAC-GCGATAGTCAAATTC
1 GCAACACAGAAGTCAAATTCGCAACACGAATTTCAAATTCGCAACTG-AAT-GTCAAATTC
* * *
6906085 GCAACACTGAAGTCAAATTCGCAACGCGAATCTGT-AAA-TCGCAACACAGAA-GTCAAATTC
1 GCAACACAGAAGTCAAATTCGCAACACGAAT-T-TCAAATTCGC-A-ACTGAATGTCAAATTC
* *
6906145 GCAACAAAGAAGTCAAATTCGCAACACTGAATTTCAAATTCGCAACTGAATTTCAAATTC
1 GCAACACAGAAGTCAAATTCGCAACAC-GAATTTCAAATTCGCAACTGAATGTCAAATTC
* * *
6906205 GC-A-ACTGAATTTCAAATTCGCAAC-TGAATTTCAAATTC
1 GCAACACAGAA-GTCAAATTCGCAACACGAATTTCAAATTC
6906243 ATAACTCGAT
Statistics
Matches: 133, Mismatches: 15, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
57 13 0.10
58 4 0.03
59 20 0.15
60 79 0.59
61 12 0.09
62 4 0.03
63 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (59 bp):
GCAACACAGAAGTCAAATTCGCAACACGAATTTCAAATTCGCAACTGAATGTCAAATTC
Found at i:6907093 original size:12 final size:12
Alignment explanation
Indices: 6907072--6907105 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6907062 ACCACATTTC
*
6907072 CAATACCAAACA
1 CAATATCAAACA
6907084 CAATATCAAACA
1 CAATATCAAACA
*
6907096 CAATCTCAAA
1 CAATATCAAA
6907106 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:6909784 original size:20 final size:20
Alignment explanation
Indices: 6909759--6909807 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
6909749 GTTTTCCTTG
6909759 AATTCGCAACGCGAAAGTCA
1 AATTCGCAACGCGAAAGTCA
6909779 AATTCGCAACGCGAAAGTCA
1 AATTCGCAACGCGAAAGTCA
6909799 AATTCGCAA
1 AATTCGCAA
6909808 TGCAAAATCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.16
Consensus pattern (20 bp):
AATTCGCAACGCGAAAGTCA
Found at i:6910121 original size:64 final size:66
Alignment explanation
Indices: 6909963--6910108 Score: 235
Period size: 66 Copynumber: 2.2 Consensus size: 66
6909953 AATTTAAAAC
*
6909963 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAAATAATTTTTATTTACATATCAAATT
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAAATAATTCTTATTTACATATCAAATT
6910028 A
66 A
* *
6910029 AACAAATCAACTTTTACAAATCAATTAAACAAGC-AAAAAATAATTCTTATTT-CCTCAT-TAAT
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAAATAATTCTTATTTACAT-ATCAAAT
6910091 TA
65 TA
6910093 AACAAATCAACTTTTA
1 AACAAATCAACTTTTA
6910109 ATGTAAAATT
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
64 23 0.30
65 19 0.25
66 34 0.45
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.32
Consensus pattern (66 bp):
AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAAATAATTCTTATTTACATATCAAATT
A
Found at i:6911376 original size:21 final size:21
Alignment explanation
Indices: 6911352--6911429 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
6911342 GAGAGACCCA
* *
6911352 TTGAACGATGTCAGGGGCCTC
1 TTGAACGATGACAGGAGCCTC
* **
6911373 TTGAACGGTGGGAGGAGCCTC
1 TTGAACGATGACAGGAGCCTC
*
6911394 TTGAACGATGAGAGGAGCCTC
1 TTGAACGATGACAGGAGCCTC
6911415 TTGAACGATGACAGG
1 TTGAACGATGACAGG
6911430 TGAATCGGGC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (21 bp):
TTGAACGATGACAGGAGCCTC
Found at i:6911398 original size:42 final size:42
Alignment explanation
Indices: 6911328--6911421 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 42
6911318 GTGAATCGGG
* * *
6911328 CTCTTGAACGGTGTGAGAGACCCATTGAACGATGTCAGGGGC
1 CTCTTGAACGGTGGGAGAGACCCATTGAACGATGACAGGAGC
*
6911370 CTCTTGAACGGTGGGAG-GAGCCTC-TTGAACGATGAGAGGAGC
1 CTCTTGAACGGTGGGAGAGA-CC-CATTGAACGATGACAGGAGC
6911412 CTCTTGAACG
1 CTCTTGAACG
6911422 ATGACAGGTG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
41 2 0.04
42 43 0.93
43 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.21
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGAGACCCATTGAACGATGACAGGAGC
Found at i:6911590 original size:4 final size:4
Alignment explanation
Indices: 6911569--6911602 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
6911559 GGGCCGCTGA
* *
6911569 AAAT AAAT TAAT ACAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
6911603 TGTTGAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:6913684 original size:20 final size:20
Alignment explanation
Indices: 6913645--6913684 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
6913635 TGCGATTTTG
* * *
6913645 GTGTTGCGATTTTCATTTTC
1 GTGTTGCGAATTTAAGTTTC
6913665 GTGTTGCGAATTTAAGTTTC
1 GTGTTGCGAATTTAAGTTTC
6913685 AAAAACTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.23, T:0.50
Consensus pattern (20 bp):
GTGTTGCGAATTTAAGTTTC
Found at i:6914048 original size:22 final size:22
Alignment explanation
Indices: 6914018--6914068 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
6914008 GATGGAGATA
6914018 GACGAATTTCACCGGAGATGGG
1 GACGAATTTCACCGGAGATGGG
* **
6914040 GACGGATTTCGTCGGAGATGGG
1 GACGAATTTCACCGGAGATGGG
6914062 GACGAAT
1 GACGAAT
6914069 ATCGCCATAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.25, C:0.16, G:0.39, T:0.20
Consensus pattern (22 bp):
GACGAATTTCACCGGAGATGGG
Found at i:6914243 original size:20 final size:20
Alignment explanation
Indices: 6914218--6914504 Score: 241
Period size: 20 Copynumber: 14.3 Consensus size: 20
6914208 TAAACGCGCT
*
6914218 TTGCGAATTTGACTATCGCG
1 TTGCGAATTTGACTATCGTG
*
6914238 TTGCGAATTTGACTATCGCG
1 TTGCGAATTTGACTATCGTG
* *
6914258 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTATCGTG
**
6914278 TTGCGAATTT-AAAATTCAGTG
1 TTGCGAATTTGACTA-TC-GTG
*
6914299 TTGCGAATTTGACTATCGCG
1 TTGCGAATTTGACTATCGTG
*
6914319 TTGCAAATTTGACTTAT-GTG
1 TTGCGAATTTGAC-TATCGTG
* *
6914339 TTGCGAATTTAACT-TCTATG
1 TTGCGAATTTGACTATC-GTG
* *
6914359 TTGCG-ATTT-ACAGAT-TTG
1 TTGCGAATTTGAC-TATCGTG
*
6914377 CTTTGCGAATTTGACTATCGCG
1 --TTGCGAATTTGACTATCGTG
* *
6914399 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTATCGTG
6914419 TTGCGAATTTGACTTAT-GTG
1 TTGCGAATTTGAC-TATCGTG
* *
6914439 TTGCAAATTTGACTATCGCG
1 TTGCGAATTTGACTATCGTG
* *
6914459 TTGTGAATTTCACTTAT-GTG
1 TTGCGAATTTGAC-TATCGTG
*
6914479 TTACGAATTTGACTTAT-GTG
1 TTGCGAATTTGAC-TATCGTG
6914499 TTGCGA
1 TTGCGA
6914505 TTTACAAATT
Statistics
Matches: 217, Mismatches: 34, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
18 5 0.02
19 9 0.04
20 169 0.78
21 29 0.13
22 5 0.02
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.42
Consensus pattern (20 bp):
TTGCGAATTTGACTATCGTG
Found at i:6914589 original size:20 final size:20
Alignment explanation
Indices: 6914566--6914610 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
6914556 GGAAACTGGA
* *
6914566 TTGCGAAATTGGAGTTCTCG
1 TTGCGAAATTGGAGATCGCG
*
6914586 TTGCG-AATTTGAGATCGCG
1 TTGCGAAATTGGAGATCGCG
6914605 TTGCGA
1 TTGCGA
6914611 GTTTGTTGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (20 bp):
TTGCGAAATTGGAGATCGCG
Found at i:6919677 original size:41 final size:45
Alignment explanation
Indices: 6919581--6919685 Score: 119
Period size: 41 Copynumber: 2.4 Consensus size: 45
6919571 AAGGGGGCAA
* * * *
6919581 AACCTAAAATGTTATAAAAAAAGCATAACATTTTTTTATTGAGTGC
1 AACCAAAAATGTTAT-GAAAAAGCATAACATTGTTTGATTGAGTGC
* *
6919627 AACCGAAAATGTTATGAAAAAG-ATAACATTGTTTGGTT-A-T-C
1 AACCAAAAATGTTATGAAAAAGCATAACATTGTTTGATTGAGTGC
6919668 AACCAAAAATGTTATGAA
1 AACCAAAAATGTTATGAA
6919686 GAAGGTGTCC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
41 18 0.34
42 1 0.02
43 1 0.02
44 13 0.25
45 6 0.11
46 14 0.26
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.31
Consensus pattern (45 bp):
AACCAAAAATGTTATGAAAAAGCATAACATTGTTTGATTGAGTGC
Found at i:6919704 original size:29 final size:28
Alignment explanation
Indices: 6919667--6919739 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 28
6919657 GTTTGGTTAT
6919667 CAACCAAAAATGTTATGAAGAAGGTGTC
1 CAACCAAAAATGTTATGAAGAAGGTGTC
6919695 CAACCGAAAAATGTTATGAAGAAGGTGTC
1 CAACC-AAAAATGTTATGAAGAAGGTGTC
*
6919724 CAATCAAAAAATGTTA
1 CAA-CCAAAAATGTTA
6919740 AGAAAAAGTT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
28 5 0.12
29 36 0.86
30 1 0.02
ACGTcount: A:0.45, C:0.14, G:0.19, T:0.22
Consensus pattern (28 bp):
CAACCAAAAATGTTATGAAGAAGGTGTC
Found at i:6930624 original size:13 final size:13
Alignment explanation
Indices: 6930606--6930631 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6930596 ATACCATCAT
6930606 TCAAATCATAAAA
1 TCAAATCATAAAA
6930619 TCAAATCATAAAA
1 TCAAATCATAAAA
6930632 GTGCAAGTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (13 bp):
TCAAATCATAAAA
Found at i:6941134 original size:21 final size:21
Alignment explanation
Indices: 6941108--6941147 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6941098 CAGAACCCCA
*
6941108 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
6941129 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
6941148 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:6945250 original size:180 final size:175
Alignment explanation
Indices: 6944953--6945309 Score: 669
Period size: 180 Copynumber: 2.0 Consensus size: 175
6944943 TTGTTTTCAT
6944953 TTTTCAATTTTGAAACATCATTTTATATTTAAAAATTTTCATAATCCGAAGCCAACCCATTGTAC
1 TTTTCAATTTTGAAACATCATTTTATATTTAAAAATTTTCATAATCCGAAGCCAACCCATTGTAC
6945018 TCCTCAAATAACTCATCATAAGATAAATCATCAAAATCGGATGAGTTAGAGGTTACCTTAGAATC
66 TCCTCAAATAACTCATCATAAGATAAATCATCAAAATCGGATGAGTTAGAGGTTACCTTAGAATC
6945083 TTCCCCGAATGCCATCAAGCACAAGTTTGCTACTTCTTGTTCCTC
131 TTCCCCGAATGCCATCAAGCACAAGTTTGCTACTTCTTGTTCCTC
6945128 TTTTCAATTTTGAAACATCATTTTATATTTTAAAAACAATTTCTCATAATCCGAAGCCAACCCAT
1 TTTTCAATTTTGAAACATCATTTTATA-TTT--AAA-AATTT-TCATAATCCGAAGCCAACCCAT
6945193 TGTACTCCTCAAATAACTCATCATAAGATAAATCATCAAAATCGGATGAGTTAGAGGTTACCTTA
61 TGTACTCCTCAAATAACTCATCATAAGATAAATCATCAAAATCGGATGAGTTAGAGGTTACCTTA
6945258 GAATCTTCCCCGAATGCCATCAAGCACAAGTTTGCTACTTCTTGTTCCTC
126 GAATCTTCCCCGAATGCCATCAAGCACAAGTTTGCTACTTCTTGTTCCTC
6945308 TT
1 TT
6945310 CATCGGAACC
Statistics
Matches: 177, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
175 27 0.15
176 3 0.02
178 3 0.02
179 5 0.03
180 139 0.79
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.34
Consensus pattern (175 bp):
TTTTCAATTTTGAAACATCATTTTATATTTAAAAATTTTCATAATCCGAAGCCAACCCATTGTAC
TCCTCAAATAACTCATCATAAGATAAATCATCAAAATCGGATGAGTTAGAGGTTACCTTAGAATC
TTCCCCGAATGCCATCAAGCACAAGTTTGCTACTTCTTGTTCCTC
Found at i:6948840 original size:3 final size:3
Alignment explanation
Indices: 6948832--6948894 Score: 108
Period size: 3 Copynumber: 20.7 Consensus size: 3
6948822 AGGATTAGGG
6948832 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
*
6948878 TTC TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
6948895 TTCTTTGTAG
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
3 54 0.95
4 3 0.05
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6949905 original size:2 final size:2
Alignment explanation
Indices: 6949894--6949992 Score: 150
Period size: 2 Copynumber: 51.0 Consensus size: 2
6949884 TATTTTAATT
6949894 TA TA -A TA TA TA TA TA TA TA TA TA TA -A TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
6949933 TA GA TA TA TA TA TA TA TA TA TA TA TC TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
6949975 TA TA TA TA TA TA TC TA TA
1 TA TA TA TA TA TA TA TA TA
6949993 ATCTAGTTGT
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
1 3 0.03
2 85 0.97
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (2 bp):
TA
Found at i:6950337 original size:16 final size:16
Alignment explanation
Indices: 6950316--6950346 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6950306 AGGATCAACT
6950316 ACTTATTTTGTATTTC
1 ACTTATTTTGTATTTC
*
6950332 ACTTATTTTTTATTT
1 ACTTATTTTGTATTT
6950347 TTATTTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.10, G:0.03, T:0.68
Consensus pattern (16 bp):
ACTTATTTTGTATTTC
Found at i:6951315 original size:16 final size:16
Alignment explanation
Indices: 6951294--6951326 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6951284 TGTTTGATAT
6951294 TGCATCTTGTACATGC
1 TGCATCTTGTACATGC
6951310 TGCATCTTGTACATGC
1 TGCATCTTGTACATGC
6951326 T
1 T
6951327 TCTAGTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (16 bp):
TGCATCTTGTACATGC
Found at i:6951949 original size:16 final size:16
Alignment explanation
Indices: 6951923--6951990 Score: 66
Period size: 16 Copynumber: 4.2 Consensus size: 16
6951913 ATTGCTCGAG
*
6951923 TCATTGTTCGTTAAGC
1 TCATTGCTCGTTAAGC
* *
6951939 TCATTACTCGTTAAAC
1 TCATTGCTCGTTAAGC
* *
6951955 TCAATGCTTGTTAAGC
1 TCATTGCTCGTTAAGC
*
6951971 TCGA-TGCTCGTTAAGT
1 TC-ATTGCTCGTTAAGC
6951987 TCAT
1 TCAT
6951991 AGAAATTTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
15 1 0.02
16 39 0.95
17 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (16 bp):
TCATTGCTCGTTAAGC
Found at i:6966624 original size:23 final size:23
Alignment explanation
Indices: 6966588--6966642 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
6966578 CTCGTATAAA
* *
6966588 TGCACCAAAGTGCCACATAGAAT
1 TGCACCGAACTGCCACATAGAAT
* *
6966611 TGCACCGAACTGCCGCGTAGAAT
1 TGCACCGAACTGCCACATAGAAT
6966634 TGCACCGAA
1 TGCACCGAA
6966643 GTTCCATATC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (23 bp):
TGCACCGAACTGCCACATAGAAT
Found at i:6985356 original size:23 final size:23
Alignment explanation
Indices: 6985326--6985386 Score: 122
Period size: 23 Copynumber: 2.7 Consensus size: 23
6985316 CGGTAGTAGC
6985326 AACCCTAATGATGGGAAGAGAAA
1 AACCCTAATGATGGGAAGAGAAA
6985349 AACCCTAATGATGGGAAGAGAAA
1 AACCCTAATGATGGGAAGAGAAA
6985372 AACCCTAATGATGGG
1 AACCCTAATGATGGG
6985387 TAGACATTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.44, C:0.15, G:0.26, T:0.15
Consensus pattern (23 bp):
AACCCTAATGATGGGAAGAGAAA
Found at i:6987007 original size:3 final size:3
Alignment explanation
Indices: 6986999--6987057 Score: 68
Period size: 3 Copynumber: 19.7 Consensus size: 3
6986989 CTACAAAAAA
* *
6986999 TAT TAT TA- TAT TAT AAA TAT TAAT TAT T-T TATT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA-T TAT TAT TAT TAT
6987044 TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
6987058 CATATTTTGT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
2 4 0.08
3 38 0.79
4 6 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:6988706 original size:30 final size:30
Alignment explanation
Indices: 6988672--6988869 Score: 140
Period size: 30 Copynumber: 6.7 Consensus size: 30
6988662 TAAATTTCAA
*
6988672 TTTTTACTATTTTAGCCCTTTAAGTTTTTG
1 TTTTTACTATTTTAGTCCTTTAAGTTTTTG
* * ** * * * * *
6988702 TTTTTGCCATTAAAATCCTTTAACTATCTA
1 TTTTTACTATTTTAGTCCTTTAAGTTTTTG
** *
6988732 TTTTTGTTATTTTAGTCCTTTGAGTTTTTG
1 TTTTTACTATTTTAGTCCTTTAAGTTTTTG
* *
6988762 TTTTTACTATTTT-GATCCTTTAACTTTCTG
1 TTTTTACTATTTTAG-TCCTTTAAGTTTTTG
6988792 TTTTTACTATTTT-GATCCTTTAAGTTTTT-
1 TTTTTACTATTTTAG-TCCTTTAAGTTTTTG
* * * *
6988821 TTTGT--TGTTTTAGT-CTTATAAATTTCTG
1 TTTTTACTATTTTAGTCCTT-TAAGTTTTTG
*
6988849 TTTTTGCTA-TTTAGTCCTTTA
1 TTTTTACTATTTTAGTCCTTTA
6988870 TTTTACTAAG
Statistics
Matches: 128, Mismatches: 33, Indels: 15
0.73 0.19 0.09
Matches are distributed among these distances:
26 3 0.02
27 13 0.10
28 5 0.04
29 13 0.10
30 94 0.73
ACGTcount: A:0.18, C:0.13, G:0.10, T:0.60
Consensus pattern (30 bp):
TTTTTACTATTTTAGTCCTTTAAGTTTTTG
Found at i:6988735 original size:60 final size:60
Alignment explanation
Indices: 6988671--6988820 Score: 185
Period size: 60 Copynumber: 2.5 Consensus size: 60
6988661 TTAAATTTCA
* *
6988671 ATTTTTACTATTTTAGCCCTTTAAGTTTTTGTTTTTGCCATTAAAATCCTTTAACTATCT
1 ATTTTTACTATTTTAGTCCTTTAAGTTTTTGTTTTTACCATTAAAATCCTTTAACTATCT
** * * *** *
6988731 ATTTTTGTTATTTTAGTCCTTTGAGTTTTTGTTTTTACTATTTTGATCCTTTAACTTTCT
1 ATTTTTACTATTTTAGTCCTTTAAGTTTTTGTTTTTACCATTAAAATCCTTTAACTATCT
*
6988791 GTTTTTACTATTTT-GATCCTTTAAGTTTTT
1 ATTTTTACTATTTTAG-TCCTTTAAGTTTTT
6988821 TTTGTTGTTT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
59 1 0.01
60 74 0.99
ACGTcount: A:0.19, C:0.13, G:0.09, T:0.59
Consensus pattern (60 bp):
ATTTTTACTATTTTAGTCCTTTAAGTTTTTGTTTTTACCATTAAAATCCTTTAACTATCT
Found at i:6988810 original size:90 final size:87
Alignment explanation
Indices: 6988662--6988869 Score: 197
Period size: 90 Copynumber: 2.4 Consensus size: 87
6988652 TTTAGACCCT
** * * * *
6988662 TAAATTTCAATTTTTACTATTTT-AGCCCTTTAAGTTTTTGTTTTTGCCATTAAAATCCTTTAAC
1 TAAATTTCTGTTTTTACTATTTTGA-TCCTTTAACTTTCTGTTTTTACCATTAAAATCCTTTAAC
6988726 TATCTATTTTTGTTATTTTAGTCCTT-
65 T-T-T-TTTTTGTTATTTTAGT-CTTA
* * * * *** *
6988752 TGAGTTTTTGTTTTTACTATTTTGATCCTTTAACTTTCTGTTTTTACTATTTTGATCCTTTAAGT
1 TAAATTTCTGTTTTTACTATTTTGATCCTTTAACTTTCTGTTTTTACCATTAAAATCCTTTAACT
*
6988817 TTTTTTTGTTGTTTTAGTCTTA
66 TTTTTTTGTTATTTTAGTCTTA
* *
6988839 TAAATTTCTGTTTTTGCTATTTAG-TCCTTTA
1 TAAATTTCTGTTTTTACTATTTTGATCCTTTA
6988870 TTTTACTAAG
Statistics
Matches: 96, Mismatches: 20, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
86 10 0.10
87 34 0.35
88 1 0.01
89 1 0.01
90 49 0.51
91 1 0.01
ACGTcount: A:0.19, C:0.12, G:0.09, T:0.59
Consensus pattern (87 bp):
TAAATTTCTGTTTTTACTATTTTGATCCTTTAACTTTCTGTTTTTACCATTAAAATCCTTTAACT
TTTTTTTGTTATTTTAGTCTTA
Found at i:6994585 original size:66 final size:66
Alignment explanation
Indices: 6994343--6994607 Score: 259
Period size: 66 Copynumber: 4.0 Consensus size: 66
6994333 AAAATAAAGT
* * * **
6994343 TTTTGTCTCTCTTGAGACAGTGTCTTTTGAA-ACACAAATCGTTGAGTATATTTCTTTTAAAAC-
1 TTTTATCTCTCTTGAGACAGTATCTTTTGAAGA-A-AAATCTTTGAGTATATTTCTTTGGAAACA
*
6994406 AAG
64 AAA
** * * * *
6994409 TTTTGCCTCTCTTGGGACAGTTTCTTTTGAAGAAAAATCTTTGAGTCTGTTTCTTTGGAAACCAA
1 TTTTATCTCTCTTGAGACAGTATCTTTTGAAGAAAAATCTTTGAGTATATTTCTTTGGAAA-CAA
6994474 AA
65 AA
* * * * *
6994476 TTTTATCTCT-TCTAAAACAGTCTCTGTTAAAGAAAAATCTTTGAGTATATTTCTTTGGAAACAA
1 TTTTATCTCTCT-TGAGACAGTATCTTTTGAAGAAAAATCTTTGAGTATATTTCTTTGGAAACAA
6994540 AA
65 AA
* * * * *
6994542 TTTTATATCTCTTGAGACAATATCTTTTGAAGGAAAATCTTTGAGTCTGTTTCTCTT-GAAACAA
1 TTTTATCTCTCTTGAGACAGTATCTTTTGAAGAAAAATCTTTGAGTATATTTCT-TTGGAAACAA
6994606 AA
65 AA
6994608 CCATCTTTGA
Statistics
Matches: 164, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
65 22 0.13
66 87 0.53
67 55 0.34
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (66 bp):
TTTTATCTCTCTTGAGACAGTATCTTTTGAAGAAAAATCTTTGAGTATATTTCTTTGGAAACAAA
A
Found at i:6994947 original size:134 final size:133
Alignment explanation
Indices: 6994707--6995055 Score: 504
Period size: 134 Copynumber: 2.6 Consensus size: 133
6994697 AACCATTATC
* *
6994707 CCTAAAGATGGCCAAAACTCTTCATCACATATGGGCCGTGTCATCCCCCGACCAGATCTCCTCAT
1 CCTAAAGATGGCC-AAACTCTTCATCACGTATGAGCCGTGTCATCCCCCGACCAGATCTCCTCAT
* * * *
6994772 CACGTAGGAGAC-GTGTCACCCCTAGATAACCAGTCGTCCTCATTGCGTAGGAACCGTGTTATCA
65 CACGTAGGAG-CTGTGTCACCCCTAGATAACCAGTCATCCTCATCGCATAGGAACCGAGTTATCA
6994836 CCCTT
129 CCCTT
*
6994841 CCTAAAGATGGCCAATACTCTTCATCACGTATGAGCCGTGTCATCCCCCGACCAAATCTCCTCAT
1 CCTAAAGATGGCCAA-ACTCTTCATCACGTATGAGCCGTGTCATCCCCCGACCAGATCTCCTCAT
*
6994906 CACGTAGGAGCTGTGTCACCTCTAGATAACCA-TCCATCCTCATCGCATAGGAACCGAGTTATCA
65 CACGTAGGAGCTGTGTCACCCCTAGATAACCAGT-CATCCTCATCGCATAGGAACCGAGTTATCA
6994970 CCCTT
129 CCCTT
** * * * *
6994975 CCTAAAGATGGCCAGAACTCTTCATCACGTATGAGCTATATTATCCACCGACTAGATCTCCTCAT
1 CCTAAAGATGGCCA-AACTCTTCATCACGTATGAGCCGTGTCATCCCCCGACCAGATCTCCTCAT
*
6995040 CACGTAGGAACTGTGT
65 CACGTAGGAGCTGTGT
6995056 TATCACCCTC
Statistics
Matches: 195, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
133 4 0.02
134 190 0.97
135 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (133 bp):
CCTAAAGATGGCCAAACTCTTCATCACGTATGAGCCGTGTCATCCCCCGACCAGATCTCCTCATC
ACGTAGGAGCTGTGTCACCCCTAGATAACCAGTCATCCTCATCGCATAGGAACCGAGTTATCACC
CTT
Found at i:6995060 original size:91 final size:92
Alignment explanation
Indices: 6994942--6995140 Score: 294
Period size: 92 Copynumber: 2.2 Consensus size: 92
6994932 TAACCATCCA
* * *
6994942 TCCTCATCGCATAGGAACCGAGTTATCACCCTTCCTAAAGATGGCC-AGAACTCTTCATCACGTA
1 TCCTCATCACGTAGGAACCGAGTTATCACCCTCCCTAAAGATGGCCAAGAACTCTTCATCACGTA
* *
6995006 TGAGCTA-TATTATCCACCGACTAGATC
66 TGAGC-AGTATCATCCACCGACCAGATC
* *
6995033 TCCTCATCACGTAGGAACTGTGTTATCACCCTCCCTAAAGATGGCCAAGAACTCTTCATCACGTA
1 TCCTCATCACGTAGGAACCGAGTTATCACCCTCCCTAAAGATGGCCAAGAACTCTTCATCACGTA
* *
6995098 TGAGCAGTGTCATCCCCCGACCAGATC
66 TGAGCAGTATCATCCACCGACCAGATC
6995125 TCCTCATCACGTAGGA
1 TCCTCATCACGTAGGA
6995141 GTCATGTCAC
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
91 42 0.43
92 55 0.57
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (92 bp):
TCCTCATCACGTAGGAACCGAGTTATCACCCTCCCTAAAGATGGCCAAGAACTCTTCATCACGTA
TGAGCAGTATCATCCACCGACCAGATC
Found at i:6995375 original size:18 final size:17
Alignment explanation
Indices: 6995341--6995404 Score: 60
Period size: 18 Copynumber: 3.7 Consensus size: 17
6995331 GGTATACAAA
6995341 AAATATTATTATATTAT
1 AAATATTATTATATTAT
*
6995358 AAATATTAATTATTTTAT
1 AAATATT-ATTATATTAT
**
6995376 TTAT-TTATTATTATTATT
1 AAATATTATTA-TATTA-T
6995394 AAATATT-TTAT
1 AAATATTATTAT
6995405 TACATATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 4 0.11
17 14 0.38
18 17 0.46
19 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
AAATATTATTATATTAT
Found at i:6995380 original size:16 final size:16
Alignment explanation
Indices: 6995361--6995405 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
6995351 ATATTATAAA
6995361 TATTAATTATTTTATT
1 TATTAATTATTTTATT
*
6995377 TATTTATTA--TTA-T
1 TATTAATTATTTTATT
*
6995390 TATTAAATATTTTATT
1 TATTAATTATTTTATT
6995406 ACATATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 6
0.72 0.09 0.19
Matches are distributed among these distances:
13 8 0.35
14 3 0.13
15 3 0.13
16 9 0.39
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTAATTATTTTATT
Found at i:6995385 original size:29 final size:30
Alignment explanation
Indices: 6995346--6995405 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
6995336 ACAAAAAATA
*
6995346 TTATTATATTATAAATATTAATTATTTTAT
1 TTATTATATTATAAATATTAAATATTTTAT
* *
6995376 TTATT-TATTATTATTATTAAATATTTTAT
1 TTATTATATTATAAATATTAAATATTTTAT
6995405 T
1 T
6995406 ACATATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (30 bp):
TTATTATATTATAAATATTAAATATTTTAT
Found at i:6997003 original size:30 final size:30
Alignment explanation
Indices: 6996968--6997190 Score: 138
Period size: 30 Copynumber: 7.5 Consensus size: 30
6996958 TGTTAATACC
* *
6996968 ATTTTAGACCCTTAAATTTTAGTTTTTACT
1 ATTTTAGTCCTTTAAATTTTAGTTTTTACT
* * *
6996998 ATTTTAG-CTCTTTAAATTTTTGTTTTTGCC
1 ATTTTAGTC-CTTTAAATTTTAGTTTTTACT
* * * *
6997028 ATGTAAGTCCTTTAACTTTCTA-TTTTTATT
1 ATTTTAGTCCTTTAAATTT-TAGTTTTTACT
* * *
6997058 ATTTTAGTCCTTTGAGTTTTTGTTTTTACT
1 ATTTTAGTCCTTTAAATTTTAGTTTTTACT
* **
6997088 ATTTT-GATCCTTTAACTTTCTAG-ACTTACT
1 ATTTTAG-TCCTTTAAATTT-TAGTTTTTACT
* * **
6997118 ATTTTAATCCTTTAAGTTTCTA-TTTTTGTT
1 ATTTTAGTCCTTTAAATTT-TAGTTTTTACT
* *
6997148 GTTTTAGT-CTTATAAA-TTTATGTTTTTGCT
1 ATTTTAGTCCTT-TAAATTTTA-GTTTTTACT
6997178 A-TTTAGTCCTTTA
1 ATTTTAGTCCTTTA
6997191 TTTTACTAAG
Statistics
Matches: 148, Mismatches: 33, Indels: 25
0.72 0.16 0.12
Matches are distributed among these distances:
28 2 0.01
29 16 0.11
30 126 0.85
31 4 0.03
ACGTcount: A:0.21, C:0.13, G:0.09, T:0.58
Consensus pattern (30 bp):
ATTTTAGTCCTTTAAATTTTAGTTTTTACT
Found at i:6998017 original size:124 final size:124
Alignment explanation
Indices: 6997792--6998028 Score: 332
Period size: 124 Copynumber: 1.9 Consensus size: 124
6997782 CTCACTCGAG
* * * ***
6997792 GCATCAACATTTCTAGTGGAGAGTTCATAATGAGAATAACTCATCTGAAGAGGGAGAAGAAGTTC
1 GCATCAACATTTCAAGTGGAGAGTTCATAATGAGAAGAACTCATCTCAAGAAAAAGAAGAAGTTC
*
6997857 ATAATGAGAAGAACTTGTTCAACCTTTAGCTAGATTCCATCACAGAAGGAGATAGATTA
66 ATAATGAGAAGAACTTGTTCAACCTTTAGATAGATTCCATCACAGAAGGAGATAGATTA
* *
6997916 GCATCAACATTTTCAAGT-GAGAGTTTATAATGAGAAGAACTCATCTCATGAAAAAGAAGAAGTT
1 GCATCAACA-TTTCAAGTGGAGAGTTCATAATGAGAAGAACTCATCTCAAGAAAAAGAAGAAGTT
* * * * *
6997980 CATAATGAGAAGAACTTGTTCGATCTTTTGATTGATTCTATCACAGAAG
65 CATAATGAGAAGAACTTGTTCAACCTTTAGATAGATTCCATCACAGAAG
6998029 ATGGTGGATC
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
124 91 0.93
125 7 0.07
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (124 bp):
GCATCAACATTTCAAGTGGAGAGTTCATAATGAGAAGAACTCATCTCAAGAAAAAGAAGAAGTTC
ATAATGAGAAGAACTTGTTCAACCTTTAGATAGATTCCATCACAGAAGGAGATAGATTA
Found at i:6998655 original size:6 final size:6
Alignment explanation
Indices: 6998644--6998670 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
6998634 CAGCTTTGTA
6998644 TTTTAT TTTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT
6998671 CGAAATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:6999708 original size:22 final size:23
Alignment explanation
Indices: 6999669--6999713 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
6999659 TGTCAAAATG
*
6999669 GTATCGATACCATAGTA-TAGTA
1 GTATCGATACCAGAGTATTAGTA
*
6999691 GTATCGATACCAGGGTATTAGTA
1 GTATCGATACCAGAGTATTAGTA
6999714 ACCGGTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (23 bp):
GTATCGATACCAGAGTATTAGTA
Found at i:7001411 original size:17 final size:18
Alignment explanation
Indices: 7001389--7001423 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7001379 AGGCGGCGTG
7001389 ATGAT-AACCCTAGGGTA
1 ATGATAAACCCTAGGGTA
7001406 ATGATACAACCCTAGGGT
1 ATGATA-AACCCTAGGGT
7001424 TTCTACCGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
19 11 0.69
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (18 bp):
ATGATAAACCCTAGGGTA
Found at i:7002845 original size:42 final size:42
Alignment explanation
Indices: 7002727--7002850 Score: 153
Period size: 42 Copynumber: 3.0 Consensus size: 42
7002717 TATCATCTTG
* *
7002727 CTCGAAAGGCTTACAGATGACCCGGAGGATTTA-AGCATCATG
1 CTCGAAAGGCTTACAGATGACCCGAAGGATTTACA-CATCATA
7002769 CTCGAAAGGCTTACAGATGACCCGAATGG-TTTACACATCATA
1 CTCGAAAGGCTTACAGATGACCCGAA-GGATTTACACATCATA
* * * * *
7002811 CTCGAAAGACTTACAGATGGCCTGAAGGACTTACAAATCA
1 CTCGAAAGGCTTACAGATGACCCGAAGGATTTACACATCA
7002851 AGAAACCCTC
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 2 0.03
42 67 0.93
43 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.22
Consensus pattern (42 bp):
CTCGAAAGGCTTACAGATGACCCGAAGGATTTACACATCATA
Found at i:7003079 original size:42 final size:41
Alignment explanation
Indices: 7003005--7003085 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 41
7002995 AGGTCTTATG
* * *
7003005 GATGACCCAAAGGCTTTATCATATCGCTCGAAAGGCTTACA
1 GATGACCCAAAGGATTTAGCATATCGCTCGAAAGACTTACA
*
7003046 GATGACCCGAAGGATTTAAGCATCAT-GCTCGAAAGACTTA
1 GATGACCCAAAGGATTT-AGCAT-ATCGCTCGAAAGACTTA
7003086 TTGATGGCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 15 0.44
42 17 0.50
43 2 0.06
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.23
Consensus pattern (41 bp):
GATGACCCAAAGGATTTAGCATATCGCTCGAAAGACTTACA
Found at i:7011803 original size:3 final size:3
Alignment explanation
Indices: 7011795--7011827 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7011785 ATTCATTATT
7011795 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7011828 ATAAGAAACG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7012280 original size:27 final size:27
Alignment explanation
Indices: 7012212--7012281 Score: 65
Period size: 27 Copynumber: 2.6 Consensus size: 27
7012202 ATTCCACTAA
*
7012212 TAAACCTCA-ATAAAAACCCATATATC
1 TAAATCTCATATAAAAACCCATATATC
* * *
7012238 AAAATATCAT-TCAAAAACCCATTTA-C
1 TAAATCTCATAT-AAAAACCCATATATC
7012264 TTAAATCTCATATAAAAA
1 -TAAATCTCATATAAAAA
7012282 ATCCATCGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
26 8 0.24
27 25 0.74
28 1 0.03
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.27
Consensus pattern (27 bp):
TAAATCTCATATAAAAACCCATATATC
Found at i:7013377 original size:13 final size:13
Alignment explanation
Indices: 7013361--7013390 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7013351 TAAATATTTA
7013361 AAATTATAATCAT
1 AAATTATAATCAT
7013374 AAATTATAATCAT
1 AAATTATAATCAT
7013387 AAAT
1 AAAT
7013391 GTAAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
AAATTATAATCAT
Found at i:7013452 original size:2 final size:2
Alignment explanation
Indices: 7013445--7013495 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
7013435 TAAATCATAA
7013445 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7013487 AT AT AT AT A
1 AT AT AT AT A
7013496 CACACACGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7018189 original size:21 final size:21
Alignment explanation
Indices: 7018163--7018205 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7018153 TGAAAACGAA
7018163 CACATGAGTTTTAATTAGGGG
1 CACATGAGTTTTAATTAGGGG
7018184 CACATGAGTTTTAATTAGGGG
1 CACATGAGTTTTAATTAGGGG
7018205 C
1 C
7018206 GAAATAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (21 bp):
CACATGAGTTTTAATTAGGGG
Found at i:7020409 original size:23 final size:23
Alignment explanation
Indices: 7020383--7020429 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7020373 AAATATGTCA
* * *
7020383 AAAACAGAGCAAAACGTACTATG
1 AAAACAAAGAAAAACGTACCATG
*
7020406 AAAATAAAGAAAAACGTACCATG
1 AAAACAAAGAAAAACGTACCATG
7020429 A
1 A
7020430 GGTTGAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.57, C:0.15, G:0.15, T:0.13
Consensus pattern (23 bp):
AAAACAAAGAAAAACGTACCATG
Found at i:7020871 original size:26 final size:26
Alignment explanation
Indices: 7020813--7020872 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
7020803 GTCGGATCCT
* * *
7020813 GTCAGGTCGGGTAAAATCAGATGCAT
1 GTCAAGTCGGGTAAAATCAGATACAG
*
7020839 GTCAAGTCGGGTAAAATCGGATACAG
1 GTCAAGTCGGGTAAAATCAGATACAG
*
7020865 GTTAAGTC
1 GTCAAGTC
7020873 AAGTAAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (26 bp):
GTCAAGTCGGGTAAAATCAGATACAG
Found at i:7021653 original size:2 final size:2
Alignment explanation
Indices: 7021644--7022304 Score: 146
Period size: 2 Copynumber: 331.0 Consensus size: 2
7021634 TTAAAACAAT
*
7021644 TA TA -A TA TA TA TA T- TA TA TA TA TA TA TA TA TT TA TA TA CTA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * * *
7021685 TA TA TGA -A CTA TA TA TA T- TA TG CA TA AA CTA TA GTT TA TA TA
1 TA TA T-A TA -TA TA TA TA TA TA TA TA TA TA -TA TA -TA TA TA TA
* *
7021727 TA AA GTA TA TA TA TA TA TA TA TA TT TA TA T- TA T- TA TA TA CTA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * * *
7021769 TA TA TA AA CTA TA TA GTT TA TA TT TA TA T- TA T- TA TA CA CTA
1 TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * * * *
7021810 TA TA TA AA CTA TA TA TA T- TA TG TA TA AA CTA TA TA CA -A TG TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
7021852 TA -A CTA TA GA GTT TA TA TA TGA -A CTA T- TGA -A CTA TA TA AA
1 TA TA -TA TA TA -TA TA TA TA T-A TA -TA TA T-A TA -TA TA TA TA
* * * *
7021892 CTA TA TA TT TA T- TA TA TA AA T- TA TA GTT TA TA TA AA T- TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
* * *
7021933 TA TGA -A T- TA TA TT TA -A TA TA TA CA -A CT- TA TA TT TA TA TA
1 TA T-A TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * * *
7021972 T- TA TG TA TA -A T- TA TA AA T- TA TA TA CTA TG TA TA -A T- TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
7022009 TA AA TA AA GTA CA TA -A GTA TA TA TA TA -A CTA TA TA TA TA TA
1 TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA
* * *
7022050 TT TA TA TA TA TA TA TA TA TA TA TA TA TA AA GT- TT TA GTA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA
* *
7022092 GTA TA TA TA CA TA TA -A TA -A TA -A AA GTA TA -A GTA T- TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA
* *
7022130 TA TA TA TA AA TA TA TA TA TA -A GTA TA TA TA TA AA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
* * * *
7022171 GTA T- TA AA TA AA GTG TA TA TA TG TA TA TA -A TA TA -A GTA TA
1 -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
* * * * * * * * *
7022211 AA GTA TA TA AA GTA CA TA TA CA TC TA AA GTA TA TA TG TG TG TA
1 TA -TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * * *
7022254 TA TA TA TA GTT TA TA TT TA TA TT TA TA CTA TA TA AA CTA TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA
7022297 TA TA TA TA
1 TA TA TA TA
7022305 CATTATGTAT
Statistics
Matches: 471, Mismatches: 105, Indels: 166
0.63 0.14 0.22
Matches are distributed among these distances:
1 42 0.09
2 388 0.82
3 41 0.09
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (2 bp):
TA
Found at i:7021664 original size:11 final size:11
Alignment explanation
Indices: 7021648--7021827 Score: 91
Period size: 11 Copynumber: 15.7 Consensus size: 11
7021638 AACAATTATA
7021648 ATATATATATT
1 ATATATATATT
7021659 ATATATATA-T
1 ATATATATATT
*
7021669 ATATATTTA-T
1 ATATATATATT
*
7021679 ATACTATATATGA
1 ATA-TATATAT-T
7021692 ACTATATATATT
1 A-TATATATATT
** * *
7021704 ATGCATAAACT
1 ATATATATATT
*
7021715 ATAGTTTATATAT
1 ATA-TATATAT-T
*
7021728 AAAGTATATATAT
1 ATA-TATATAT-T
7021741 ATATATATATT
1 ATATATATATT
7021752 -TATAT-TATT
1 ATATATATATT
7021761 ATATACTATATAT
1 ATATA-TATAT-T
*
7021774 AAACTATATAGTTT
1 ATA-TATATA--TT
*
7021788 ATATTTATATT
1 ATATATATATT
* *
7021799 AT-TATACACT
1 ATATATATATT
* *
7021809 ATATATAAACT
1 ATATATATATT
7021820 ATATATAT
1 ATATATAT
7021828 TATGTATAAA
Statistics
Matches: 131, Mismatches: 24, Indels: 28
0.72 0.13 0.15
Matches are distributed among these distances:
9 4 0.03
10 29 0.22
11 42 0.32
12 14 0.11
13 34 0.26
14 7 0.05
15 1 0.01
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (11 bp):
ATATATATATT
Found at i:7021798 original size:41 final size:40
Alignment explanation
Indices: 7021738--7021835 Score: 153
Period size: 41 Copynumber: 2.5 Consensus size: 40
7021728 AAAGTATATA
*
7021738 TATATATATATATTTATATTATTATATACTATATATAAAC
1 TATATATATATATTTATATTATTATACACTATATATAAAC
*
7021778 TATATAGTTTATATTTATATTATTATACACTATATATAAAC
1 TATATA-TATATATTTATATTATTATACACTATATATAAAC
*
7021819 TATATATAT-TATGTATA
1 TATATATATATATTTATA
7021836 AACTATATAC
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 7 0.13
40 8 0.15
41 38 0.72
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (40 bp):
TATATATATATATTTATATTATTATACACTATATATAAAC
Found at i:7021908 original size:37 final size:35
Alignment explanation
Indices: 7021732--7021910 Score: 96
Period size: 37 Copynumber: 4.8 Consensus size: 35
7021722 ATATATAAAG
* * * *
7021732 TATATATA-TATATATATATTTATATTATTATATAC
1 TATATAAACTATATATTTA-TTATATAACTATATAC
* * *
7021767 TATATATAAACTATATAGTTTATATTTATATTATTATACAC
1 --TATATAAACTATATA--TT-TA-TTATATAACTATATAC
7021808 TATATATAAACTATATATATTATGTATA-AACTATATAC
1 --TATATAAACTATATAT-TTAT-TATATAACTATATAC
* * *
7021846 AATGTATAACTATAGAGTTTA-TATATGAACTAT-TGAAC
1 TATATA-AACTATATA-TTTATTATAT-AACTATAT--AC
7021884 TATATAAACTATATATTTATTATATAA
1 TATATAAACTATATATTTATTATATAA
7021911 ATTATAGTTT
Statistics
Matches: 117, Mismatches: 12, Indels: 27
0.75 0.08 0.17
Matches are distributed among these distances:
35 4 0.03
36 11 0.09
37 37 0.32
38 21 0.18
39 7 0.06
40 2 0.02
41 35 0.30
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (35 bp):
TATATAAACTATATATTTATTATATAACTATATAC
Found at i:7021923 original size:27 final size:25
Alignment explanation
Indices: 7021893--7021953 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 25
7021883 CTATATAAAC
7021893 TATATATTTATTATATAAATTATAGTT
1 TATATATTTA-TATATAAATTATA-TT
* *
7021920 TATATAAATTATATATGAATTATATT
1 TATAT-ATTTATATATAAATTATATT
7021946 TAATATAT
1 T-ATATAT
7021954 ACAACTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 4 0.14
27 21 0.72
28 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (25 bp):
TATATATTTATATATAAATTATATT
Found at i:7022354 original size:19 final size:18
Alignment explanation
Indices: 7022327--7022380 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
7022317 CTATACAATG
7022327 TATAACTATAGAGTTATA
1 TATAACTATAGAGTTATA
* **
7022345 TATGAACTATTGAACTATA
1 TAT-AACTATAGAGTTATA
*
7022364 TATAACTATATAGTTAT
1 TATAACTATAGAGTTAT
7022381 TAATAAATTA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
18 13 0.46
19 15 0.54
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (18 bp):
TATAACTATAGAGTTATA
Found at i:7022436 original size:18 final size:17
Alignment explanation
Indices: 7022406--7022443 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
7022396 TTTATGTAAA
*
7022406 TTAAATATGAATTATAT
1 TTAAATATAAATTATAT
7022423 TTAATATATAAATTATAT
1 TTAA-ATATAAATTATAT
7022441 TTA
1 TTA
7022444 TATTATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TTAAATATAAATTATAT
Found at i:7022571 original size:2 final size:2
Alignment explanation
Indices: 7022557--7022638 Score: 94
Period size: 2 Copynumber: 40.5 Consensus size: 2
7022547 AAAGACTAAA
* * * *
7022557 AT AT AT A- AGT AT AT AC AT AT AA AGT AT GT AT GT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT
*
7022600 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7022639 AACTATAAAG
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
1 1 0.01
2 64 0.96
3 2 0.03
ACGTcount: A:0.48, C:0.01, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7023636 original size:19 final size:20
Alignment explanation
Indices: 7023598--7023637 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
7023588 GACCGTTAAA
*
7023598 TAGGGGGAATCGGTACTCCCT
1 TAGGGAGAATCGGTA-TCCCT
7023619 TAGGGAGAATCGGT-TCCCT
1 TAGGGAGAATCGGTATCCCT
7023638 CCGAGCATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.25
Consensus pattern (20 bp):
TAGGGAGAATCGGTATCCCT
Found at i:7023779 original size:11 final size:11
Alignment explanation
Indices: 7023761--7023790 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7023751 AAATACTTTG
7023761 TAAAATTATTT
1 TAAAATTATTT
*
7023772 TGAAATTATTT
1 TAAAATTATTT
7023783 TAAAATTA
1 TAAAATTA
7023791 AAACTTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
TAAAATTATTT
Found at i:7025900 original size:196 final size:202
Alignment explanation
Indices: 7025566--7025966 Score: 760
Period size: 196 Copynumber: 2.0 Consensus size: 202
7025556 TGTTTGGATC
7025566 ATCGGGATTAGGATTAGGAATTTGTTGGATAGGTGGAGGATTTGGAGGTGAGTTTGAAGGTTGGC
1 ATCGGGATTAGGATTAGGAATTTGTTGGATAGGTGGAGGATTTGGAGGTGAGTTTGAAGGTTGGC
7025631 TAGAACGACTAGAGAAAGGTCTAGAACATTTGTGAGACATGATTTAAGGTAATTGGAATGAAGAG
66 TAGAACGACTAGAGAAAGGTCTAGAACATTTGTGAGACATGATTTAAGGTAATTGGAATGAAGAG
7025696 AATAACCTGCAA-TTTTTTCAAACACATGTATAC-A-AT-ATC-ATCCCAAAACTCAATTGAGTC
131 AATAACCTGCAATTTTTTTCAAACACATGTATACAATATAATCAATCCCAAAACTCAATTGAGTC
7025756 CTC-AAT
196 CTCAAAT
7025762 ATCGGGATTAGGATTAGGAATTTGTTGGATAGGTGGAGGATTTGGAGGTGAGTTTGAAGGTTGGC
1 ATCGGGATTAGGATTAGGAATTTGTTGGATAGGTGGAGGATTTGGAGGTGAGTTTGAAGGTTGGC
7025827 TAGAACGACTAGAGAAAGGTCTAGAACATTTGTGAGACATGATTTAAGGTAATTGGAATGAAGAG
66 TAGAACGACTAGAGAAAGGTCTAGAACATTTGTGAGACATGATTTAAGGTAATTGGAATGAAGAG
7025892 AATAACCTGCAATTTTTTTCAAACACATGTATACAATATAATCAATCCCAAAACTCAATTGAGTC
131 AATAACCTGCAATTTTTTTCAAACACATGTATACAATATAATCAATCCCAAAACTCAATTGAGTC
7025957 CTCAAAT
196 CTCAAAT
7025964 ATC
1 ATC
7025967 TCAATGTTCT
Statistics
Matches: 199, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
196 142 0.71
197 21 0.11
198 1 0.01
199 2 0.01
200 3 0.02
201 24 0.12
202 6 0.03
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (202 bp):
ATCGGGATTAGGATTAGGAATTTGTTGGATAGGTGGAGGATTTGGAGGTGAGTTTGAAGGTTGGC
TAGAACGACTAGAGAAAGGTCTAGAACATTTGTGAGACATGATTTAAGGTAATTGGAATGAAGAG
AATAACCTGCAATTTTTTTCAAACACATGTATACAATATAATCAATCCCAAAACTCAATTGAGTC
CTCAAAT
Found at i:7026567 original size:23 final size:23
Alignment explanation
Indices: 7026516--7026588 Score: 89
Period size: 23 Copynumber: 3.3 Consensus size: 23
7026506 CAGAACCCCG
* *
7026516 AGGGGGTATCGATTCCCC-T-AC
1 AGGGGGAATCGATTCCCCTTCAA
7026537 AGGGGGAATCGATTCCCCTTCAA
1 AGGGGGAATCGATTCCCCTTCAA
7026560 AGGGGGAATC-AGTTCCCCTTCAA
1 AGGGGGAATCGA-TTCCCCTTCAA
*
7026583 GGGGGG
1 AGGGGG
7026589 TATCAACTCC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
21 17 0.37
22 2 0.04
23 27 0.59
ACGTcount: A:0.22, C:0.25, G:0.33, T:0.21
Consensus pattern (23 bp):
AGGGGGAATCGATTCCCCTTCAA
Found at i:7026593 original size:23 final size:22
Alignment explanation
Indices: 7026516--7026587 Score: 94
Period size: 21 Copynumber: 3.3 Consensus size: 22
7026506 CAGAACCCCG
* *
7026516 AGGGGGTATCGATTCCCCTAC-
1 AGGGGGAATCGATTCCCCTTCA
7026537 AGGGGGAATCGATTCCCCTTCAA
1 AGGGGGAATCGATTCCCCTTC-A
7026560 AGGGGGAATC-AGTTCCCCTTCA
1 AGGGGGAATCGA-TTCCCCTTCA
7026582 AGGGGG
1 AGGGGG
7026588 GTATCAACTC
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.41
22 8 0.17
23 19 0.41
ACGTcount: A:0.22, C:0.25, G:0.32, T:0.21
Consensus pattern (22 bp):
AGGGGGAATCGATTCCCCTTCA
Found at i:7026600 original size:22 final size:23
Alignment explanation
Indices: 7026537--7026599 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
7026527 ATTCCCCTAC
* *
7026537 AGGGGGAATCGATTCCCCTTCAA
1 AGGGGGAATCAACTCCCCTTCAA
**
7026560 AGGGGGAATCAGTTCCCCTTCAA
1 AGGGGGAATCAACTCCCCTTCAA
* *
7026583 GGGGGGTATCAACTCCC
1 AGGGGGAATCAACTCCC
7026600 TCTGCACAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.21
Consensus pattern (23 bp):
AGGGGGAATCAACTCCCCTTCAA
Found at i:7031829 original size:21 final size:22
Alignment explanation
Indices: 7031805--7031858 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
7031795 CGTTAAACAA
7031805 GGGGAATCGGTACCCCCTTGGG
1 GGGGAATCGGTACCCCCTTGGG
7031827 GGGGAATCGGTACCCCCTT-GG
1 GGGGAATCGGTACCCCCTTGGG
7031848 GGGGAATCGGT
1 GGGGAATCGGT
7031859 TCCCTCCGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 13 0.41
22 19 0.59
ACGTcount: A:0.15, C:0.24, G:0.43, T:0.19
Consensus pattern (22 bp):
GGGGAATCGGTACCCCCTTGGG
Found at i:7036011 original size:24 final size:24
Alignment explanation
Indices: 7035984--7036041 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
7035974 TATACCTATG
7035984 GTATCGGTACTACTATGTAAAGTA
1 GTATCGGTACTACTATGTAAAGTA
7036008 GTATCGGTACTACTATGTAAAGTA
1 GTATCGGTACTACTATGTAAAGTA
7036032 GTATCGGTAC
1 GTATCGGTAC
7036042 CCCTTTAGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (24 bp):
GTATCGGTACTACTATGTAAAGTA
Found at i:7036147 original size:40 final size:38
Alignment explanation
Indices: 7036099--7036191 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 38
7036089 TTGGTATAAG
* * *
7036099 TATACATATATATATACATAAAGTTTTAGTATAAAGTATA
1 TATACATATATATATACATAAAATATAAGTAT--AGTATA
* *
7036139 TATACATATATA-ATAATATAAAATATAAGTATATTATA
1 TATACATATATATAT-ACATAAAATATAAGTATAGTATA
7036177 TATACATATA-ATATA
1 TATACATATATATATA
7036192 ATATAATTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
37 2 0.04
38 17 0.37
39 2 0.04
40 25 0.54
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (38 bp):
TATACATATATATATACATAAAATATAAGTATAGTATA
Found at i:7036166 original size:15 final size:15
Alignment explanation
Indices: 7036146--7036281 Score: 60
Period size: 15 Copynumber: 9.3 Consensus size: 15
7036136 ATATATACAT
7036146 ATATAATAATATAAA
1 ATATAATAATATAAA
*
7036161 ATATAAGT-ATAT--T
1 ATATAA-TAATATAAA
*
7036174 ATAT-ATACATATAAT
1 ATATAATA-ATATAAA
7036189 ATA-ATATAAT-TAAA
1 ATATA-ATAATATAAA
* *
7036203 AGACTAA-AGTATATAA
1 ATA-TAATAATATA-AA
* *
7036219 ACAT-ATAATACAAA
1 ATATAATAATATAAA
* *
7036233 GTAT-ATAAATATATA
1 ATATAAT-AATATAAA
7036248 ATATAA-AATATATAA
1 ATATAATAATATA-AA
7036263 ATATAA-AATATAAA
1 ATATAATAATATAAA
7036277 ATATA
1 ATATA
7036282 TATACGTATA
Statistics
Matches: 93, Mismatches: 13, Indels: 31
0.68 0.09 0.23
Matches are distributed among these distances:
11 1 0.01
12 1 0.01
13 8 0.09
14 27 0.29
15 46 0.49
16 10 0.11
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (15 bp):
ATATAATAATATAAA
Found at i:7036235 original size:22 final size:22
Alignment explanation
Indices: 7036207--7036296 Score: 108
Period size: 22 Copynumber: 4.1 Consensus size: 22
7036197 ATTAAAAGAC
*
7036207 TAAAGTATATAAACATATAATA
1 TAAAATATATAAACATATAATA
* * *
7036229 CAAAGTATATAAATATATAATA
1 TAAAATATATAAACATATAATA
* *
7036251 TAAAATATATAAATATAAAATA
1 TAAAATATATAAACATATAATA
* *
7036273 TAAAATATATATACGTATAATA
1 TAAAATATATAAACATATAATA
7036295 TA
1 TA
7036297 TATGTGTGTG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 59 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (22 bp):
TAAAATATATAAACATATAATA
Found at i:7036235 original size:66 final size:66
Alignment explanation
Indices: 7036165--7036294 Score: 158
Period size: 66 Copynumber: 2.0 Consensus size: 66
7036155 TATAAAATAT
* * *
7036165 AAGTATAT-TATATATACATATAATATA-ATATAAT-TAAAAGACTAAAGTATATAAACATATAA
1 AAGTATATAAATATATA-ATATAAAATATATA-AATATAAAAGA-TAAAATATATAAACATATAA
7036227 TACA
63 TACA
* * *
7036231 AAGTATATAAATATATAATATAAAATATATAAATATAAAATATAAAATATATATACGTATAATA
1 AAGTATATAAATATATAATATAAAATATATAAATATAAAAGATAAAATATATAAACATATAATA
7036295 TATATGTGTG
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
66 39 0.71
67 16 0.29
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (66 bp):
AAGTATATAAATATATAATATAAAATATATAAATATAAAAGATAAAATATATAAACATATAATAC
A
Found at i:7036280 original size:20 final size:21
Alignment explanation
Indices: 7036144--7036283 Score: 95
Period size: 22 Copynumber: 6.3 Consensus size: 21
7036134 GTATATATAC
7036144 ATATATAATAATATAAA-ATATAA
1 ATATAT-A-AATATAAATATA-AA
* * * *
7036167 GTATATTATATATACATATAAT
1 ATATA-TAAATATAAATATAAA
* *
7036189 ATAATATAATTA-AAAGACTAAA
1 AT-ATATAAATATAAATA-TAAA
* * *
7036211 GTATATAAACATATAATACAAA
1 ATATATAAATATA-AATATAAA
*
7036233 GTATATAAATATATAATATAAA
1 ATATATAAATATA-AATATAAA
7036255 ATATATAAATATAAAATATAAA
1 ATATATAAATAT-AAATATAAA
7036277 ATATATA
1 ATATATA
7036284 TACGTATAAT
Statistics
Matches: 92, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
21 10 0.11
22 66 0.72
23 15 0.16
24 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (21 bp):
ATATATAAATATAAATATAAA
Found at i:7036388 original size:2 final size:2
Alignment explanation
Indices: 7036369--7036956 Score: 242
Period size: 2 Copynumber: 298.0 Consensus size: 2
7036359 AACATATAAG
*
7036369 TA TA TA -A TA TA AA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
7036411 TA TA TA TA TA TA TA CTT TA TA T- TA TA TA CT- TA TA CTT TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA -TA TA TA
** *
7036452 TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA CG TA TA TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
7036493 TA TA TT TA -A TA CT- TA TA TA CTT TG TA T- TA TA T- TA T- TA TA
1 TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
* * * *
7036532 TA CTT TA TA T- TA TA TA TA TA TA TA TA CA TA TA TA TA AA CTT TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
* *
7036575 TA GTT TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
7036617 CT- TA TA TT TA -A TGC T- TA TA TA CTT TA TA T- TA TA TA TT TA
1 -TA TA TA TA TA TA T-A TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * * *
7036656 TA TA CTT TA GTC TT TA TA -A T- TA TA CTT TA TA TA TA TA TA -A
1 TA TA -TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
* * * * *
7036696 TA TGC T- TA TA TT TA TA T- TA T- TA TA TT TA TA TA CTT TA GTC
1 TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA -TA
* * *
7036736 TT TA TA -A T- TA TA -A TT TA TA TA TA TA T- TA -A TA TGC T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA
* * * *
7036773 TA T- TT TC TA T- TA T- TA TA TA TG TA TA TA TA CTT TA TA CTA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA
* * ** *
7036813 AA CTT TA TA TA TA TA TA CC T- TA TA GTT TA TA TA TA TA T- TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * * *
7036855 TA TA CTT TA TA GTT TA CA CTT TA TA TA TA TA CT- TA TA CT- TA TA
1 TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA -TA TA TA -TA TA TA
*
7036898 CT- TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
7036940 TA TA TA TA -A TA TT TA TA
1 TA TA TA TA TA TA TA TA TA
7036957 ATGAATGTTA
Statistics
Matches: 439, Mismatches: 81, Indels: 132
0.67 0.12 0.20
Matches are distributed among these distances:
1 37 0.08
2 375 0.85
3 27 0.06
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7037405 original size:24 final size:24
Alignment explanation
Indices: 7037360--7037405 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7037350 TAAGTCCATT
*
7037360 TTTTATATTAATATCAGCTTCACA
1 TTTTATATTAATATCAACTTCACA
*
7037384 TTTTATATTTAAT-TCAATTTCA
1 TTTTATA-TTAATATCAACTTCA
7037406 TCCCTCATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.33, C:0.13, G:0.02, T:0.52
Consensus pattern (24 bp):
TTTTATATTAATATCAACTTCACA
Found at i:7037644 original size:20 final size:20
Alignment explanation
Indices: 7037579--7037632 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
7037569 GACCAATAAA
7037579 TTCGCAACGCGAATTCTAAT
1 TTCGCAACGCGAATTCTAAT
* *
7037599 TTCGCAAC-CCAATTTCCAAT
1 TTCGCAACGCGAA-TTCTAAT
7037619 TTCGCAACGCGAAT
1 TTCGCAACGCGAAT
7037633 ATGTAATTCG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 3 0.10
20 23 0.79
21 3 0.10
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (20 bp):
TTCGCAACGCGAATTCTAAT
Found at i:7037853 original size:22 final size:22
Alignment explanation
Indices: 7037811--7037853 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7037801 CGGTGACATC
*
7037811 CGTCCCCATCTCCGACGAAATT
1 CGTCCCCATCTCCGACAAAATT
* *
7037833 CGTCCCCATTTCTGACAAAAT
1 CGTCCCCATCTCCGACAAAAT
7037854 CCATCTATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.37, G:0.12, T:0.26
Consensus pattern (22 bp):
CGTCCCCATCTCCGACAAAATT
Found at i:7038089 original size:13 final size:13
Alignment explanation
Indices: 7038071--7038099 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7038061 AGTATTTGTC
7038071 TTTGTTTTGTCTT
1 TTTGTTTTGTCTT
7038084 TTTGTTTTGTCTT
1 TTTGTTTTGTCTT
7038097 TTT
1 TTT
7038100 ATTAAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.14, T:0.79
Consensus pattern (13 bp):
TTTGTTTTGTCTT
Found at i:7040390 original size:21 final size:21
Alignment explanation
Indices: 7040299--7040394 Score: 81
Period size: 21 Copynumber: 4.6 Consensus size: 21
7040289 GATACACCTA
***
7040299 TCATCATTCAAGAGGTGACTC
1 TCATCATTCAAGAGGCCCCTC
*
7040320 -CTATCAGTCAAGAGGCCCCTC
1 TC-ATCATTCAAGAGGCCCCTC
* *
7040341 TCATTA-TCAAAGAAGCCCCTC
1 TCATCATTC-AAGAGGCCCCTC
*
7040362 -CTACCATTCAAGAGGCCCCTC
1 TC-ATCATTCAAGAGGCCCCTC
7040383 TCATCATTCAAG
1 TCATCATTCAAG
7040395 TGGTCCCGCC
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
20 4 0.07
21 51 0.86
22 4 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (21 bp):
TCATCATTCAAGAGGCCCCTC
Found at i:7041869 original size:60 final size:64
Alignment explanation
Indices: 7041769--7041906 Score: 169
Period size: 60 Copynumber: 2.2 Consensus size: 64
7041759 TTTTACATTG
* *
7041769 AAAGTTGATTTG-TTACAATTGATGAGGAAATAAGATTTA-TTTT-TTGATTAATT-ATTTGTA
1 AAAGTTGATTTGTTTACAATTGATGAGGAAATAAAAATTATTTTTCTTGATTAATTGATTTGTA
* ** * *
7041829 AAAGTTGATTTGTTTA-ATTTGATTTGTAAATAAAAATTATTTTTCCTTGTTTAATTGATTTGTA
1 AAAGTTGATTTGTTTACAATTGATGAGGAAATAAAAATTATTTTT-CTTGATTAATTGATTTGTA
7041893 AAAGTTGATTTGTT
1 AAAGTTGATTTGTT
7041907 GTTTCTAAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
60 29 0.44
61 7 0.11
63 9 0.14
64 21 0.32
ACGTcount: A:0.33, C:0.02, G:0.15, T:0.50
Consensus pattern (64 bp):
AAAGTTGATTTGTTTACAATTGATGAGGAAATAAAAATTATTTTTCTTGATTAATTGATTTGTA
Found at i:7041990 original size:20 final size:20
Alignment explanation
Indices: 7041965--7042074 Score: 106
Period size: 20 Copynumber: 5.8 Consensus size: 20
7041955 ATTGAAGGTA
7041965 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACGCGAAAGT
* *
7041985 CAAATTCGCAGCGCGAAAAT
1 CAAATTCGCAACGCGAAAGT
*
7042005 CAAATTCGCAACACGAAA-T
1 CAAATTCGCAACGCGAAAGT
*** *
7042024 --AA---GCATTACGATAGT
1 CAAATTCGCAACGCGAAAGT
*
7042039 CAAATTCGCAACGTGAAAGT
1 CAAATTCGCAACGCGAAAGT
7042059 CAAATTCGCAACGCGA
1 CAAATTCGCAACGCGA
7042075 TTTTTTGTTT
Statistics
Matches: 71, Mismatches: 13, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
14 8 0.11
15 1 0.01
17 4 0.06
19 1 0.01
20 57 0.80
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.17
Consensus pattern (20 bp):
CAAATTCGCAACGCGAAAGT
Found at i:7042108 original size:20 final size:20
Alignment explanation
Indices: 7042083--7042121 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7042073 GATTTTTTGT
*
7042083 TTGCGAATTTGACTTTCGCG
1 TTGCGAATTTGACTATCGCG
7042103 TTGCGAATTTGACTATCGC
1 TTGCGAATTTGACTATCGC
7042122 AACGCTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (20 bp):
TTGCGAATTTGACTATCGCG
Found at i:7042388 original size:39 final size:39
Alignment explanation
Indices: 7042334--7042419 Score: 154
Period size: 39 Copynumber: 2.2 Consensus size: 39
7042324 CAAGTTGTAG
7042334 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* *
7042373 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
7042412 ATTTTGAT
1 ATTTTGAT
7042420 GAGCATCGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.19, C:0.15, G:0.19, T:0.48
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:7042752 original size:18 final size:18
Alignment explanation
Indices: 7042729--7042765 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7042719 CGAAATTTAT
7042729 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
7042747 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
7042765 A
1 A
7042766 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:7043186 original size:25 final size:25
Alignment explanation
Indices: 7043152--7043201 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
7043142 ATTATTTTTC
*
7043152 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
7043177 CAAATAATGTACCCACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
7043202 TAATTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:7043285 original size:20 final size:20
Alignment explanation
Indices: 7043262--7043303 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
7043252 AGACCTGTTG
*
7043262 AAGGTAAATTCGCAACGTGA
1 AAGGTAAATTCGCAACGCGA
7043282 AAGGTAAATTCGCAACGCGA
1 AAGGTAAATTCGCAACGCGA
7043302 AA
1 AA
7043304 TAAGCGTTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.17
Consensus pattern (20 bp):
AAGGTAAATTCGCAACGCGA
Found at i:7043365 original size:19 final size:20
Alignment explanation
Indices: 7043312--7043372 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 20
7043302 AATAAGCGTT
*
7043312 GCGATAGTCAAATTTGCAAC
1 GCGATAGTCAAATTCGCAAC
* *
7043332 GCGAAAGTCAAATTCGCTAC
1 GCGATAGTCAAATTCGCAAC
7043352 GCGATAGT-AAATTCGCAAC
1 GCGATAGTCAAATTCGCAAC
7043371 GC
1 GC
7043373 TTATTTCGCG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
19 12 0.33
20 24 0.67
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.21
Consensus pattern (20 bp):
GCGATAGTCAAATTCGCAAC
Found at i:7043714 original size:18 final size:18
Alignment explanation
Indices: 7043691--7043726 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7043681 AAGCCGGTTG
*
7043691 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
7043709 TGATTGCGATTTTGATTT
1 TGATTGCGATTTTGATTT
7043727 CCTTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:7046023 original size:24 final size:24
Alignment explanation
Indices: 7045996--7046042 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
7045986 CAAAATTCAA
7045996 GTATTGACCAAGATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
*
7046020 GTATTGACCAAGATCAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
7046043 AATACTGACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:7046051 original size:24 final size:24
Alignment explanation
Indices: 7046000--7046051 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7045990 ATTCAAGTAT
** *
7046000 TGACCAAGATCAAAGTTCGGGTAT
1 TGACCAAGATCAAAGTTCGAATAC
*
7046024 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTTCGAATAC
7046048 TGAC
1 TGAC
7046052 TAGTACTCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (24 bp):
TGACCAAGATCAAAGTTCGAATAC
Found at i:7046184 original size:12 final size:12
Alignment explanation
Indices: 7046163--7046196 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7046153 GGTTGTAGGT
*
7046163 TTTGAGATTGTG
1 TTTGATATTGTG
7046175 TTTGATATTGTG
1 TTTGATATTGTG
*
7046187 TTTGGTATTG
1 TTTGATATTG
7046197 GAAATGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:7047131 original size:22 final size:22
Alignment explanation
Indices: 7047106--7047234 Score: 97
Period size: 22 Copynumber: 5.9 Consensus size: 22
7047096 AAGTGTTTGG
7047106 ATATAAGTATTAAATATAAAAT
1 ATATAAGTATTAAATATAAAAT
* * *
7047128 ATATAAGTACATAAGTACTAAAGT
1 ATATAAGTA-TTAAATA-TAAAAT
* *
7047152 ATATAA-TATAAAATATTAAACT
1 ATATAAGTATTAAATA-TAAAAT
* *
7047174 ATATAA-TA-TAAGTATTAAAT
1 ATATAAGTATTAAATATAAAAT
** *
7047194 ATA-AAGTATTATTGTATATAA-
1 ATATAAGTATTA-AATATAAAAT
7047215 ATATAAGTATTAAATATAAA
1 ATATAAGTATTAAATATAAA
7047235 GTATTTTAAT
Statistics
Matches: 83, Mismatches: 18, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
19 2 0.02
20 9 0.11
21 14 0.17
22 40 0.48
23 7 0.08
24 11 0.13
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.36
Consensus pattern (22 bp):
ATATAAGTATTAAATATAAAAT
Found at i:7047225 original size:36 final size:36
Alignment explanation
Indices: 7047106--7047239 Score: 148
Period size: 36 Copynumber: 3.7 Consensus size: 36
7047096 AAGTGTTTGG
*
7047106 ATATAAGTATTAAATATAAAATA-TATAAGTACATAA
1 ATATAAGTATTAAATATAAAATATTAT-AGTATATAA
* * *
7047142 GTACTAAAGTA-TATAATATAAAATATTAAACTATAT-A
1 ATA-T-AAGTATTA-AATATAAAATATTATAGTATATAA
* *
7047179 ATATAAGTATTAAATATAAAGTATTATTGTATATAA
1 ATATAAGTATTAAATATAAAATATTATAGTATATAA
*
7047215 ATATAAGTATTAAATATAAAGTATT
1 ATATAAGTATTAAATATAAAATATT
7047240 TTAATAATCA
Statistics
Matches: 83, Mismatches: 9, Indels: 12
0.80 0.09 0.12
Matches are distributed among these distances:
35 23 0.28
36 31 0.37
37 6 0.07
38 21 0.25
39 2 0.02
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (36 bp):
ATATAAGTATTAAATATAAAATATTATAGTATATAA
Found at i:7047253 original size:73 final size:73
Alignment explanation
Indices: 7047106--7047239 Score: 177
Period size: 73 Copynumber: 1.9 Consensus size: 73
7047096 AAGTGTTTGG
*
7047106 ATATAAGTATTAAATATAAAATATATAAGTACATAAGTACTAAAGTATATAATATAAAATATTAA
1 ATATAAGTATTAAATATAAAATATATAAGTACATAAATACTAAAGTATATAATATAAAATATTAA
7047171 ACTATATA
66 ACTATATA
* * * *
7047179 ATATAAGTATTAAATATAAAGTAT-TATTGTATATAAATA-T-AAGTAT-TAAATATAAAGTATT
1 ATATAAGTATTAAATATAAAATATATA-AGTACATAAATACTAAAGTATAT-AATATAAAATATT
7047240 TTAATAATCA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
70 1 0.02
71 18 0.33
72 3 0.06
73 32 0.59
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (73 bp):
ATATAAGTATTAAATATAAAATATATAAGTACATAAATACTAAAGTATATAATATAAAATATTAA
ACTATATA
Found at i:7047284 original size:30 final size:30
Alignment explanation
Indices: 7047223--7047305 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 30
7047213 AAATATAAGT
* *
7047223 ATTAA-ATATAAAGTATTTTAATAATCATA
1 ATTAATATATTAAGTATTTTATTAATCATA
*
7047252 ATTAATATATTAAGTATATTTATTAAT-TTA
1 ATTAATATATTAAGTAT-TTTATTAATCATA
7047282 ATT-ATCATAATTAA-TATTTTATTA
1 ATTAAT-AT-ATTAAGTATTTTATTA
7047306 TAATATTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
29 14 0.30
30 20 0.43
31 13 0.28
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (30 bp):
ATTAATATATTAAGTATTTTATTAATCATA
Found at i:7047315 original size:20 final size:21
Alignment explanation
Indices: 7047267--7047320 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
7047257 TATATTAAGT
* *
7047267 ATATTTATTAATTTAATTATC
1 ATATTTAATAATTTAATTATA
* *
7047288 ATAATTAAT-ATTTTATTATA
1 ATATTTAATAATTTAATTATA
*
7047308 ATATTTAAAAATT
1 ATATTTAATAATT
7047321 AATCATATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATTTAATAATTTAATTATA
Found at i:7047476 original size:16 final size:16
Alignment explanation
Indices: 7047451--7047493 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
7047441 CGGATTATTT
*
7047451 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTCAAA
* *
7047467 ACATGTCAGGTTCATA
1 ACAGGTCAGGTTCAAA
7047483 ACAGGTCAGGT
1 ACAGGTCAGGT
7047494 AATATCTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (16 bp):
ACAGGTCAGGTTCAAA
Found at i:7049018 original size:14 final size:15
Alignment explanation
Indices: 7048964--7049016 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
7048954 TTTTTTTTTC
7048964 TTTAAATTTTATAAA
1 TTTAAATTTTATAAA
**
7048979 TTTAAA-TTTAT-TC
1 TTTAAATTTTATAAA
*
7048992 TATAAAATTTTATAAA
1 T-TTAAATTTTATAAA
7049008 TTTAAATTT
1 TTTAAATTT
7049017 ATTTTTGTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
13 1 0.03
14 9 0.31
15 18 0.62
16 1 0.03
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTAAATTTTATAAA
Found at i:7052047 original size:11 final size:10
Alignment explanation
Indices: 7052024--7052071 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
7052014 TTATTTTTAA
7052024 AAAAATAAA-
1 AAAAATAAAT
7052033 AAAAATACAAT
1 AAAAATA-AAT
*
7052044 AAAAGAGAAAT
1 AAAA-ATAAAT
*
7052055 AAAAATTAAT
1 AAAAATAAAT
7052065 AAAAATA
1 AAAAATA
7052072 TAATGTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
9 7 0.22
10 12 0.38
11 11 0.34
12 2 0.06
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:7052075 original size:11 final size:11
Alignment explanation
Indices: 7052021--7052075 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
7052011 TATTTATTTT
*
7052021 TAAAAAAATAA
1 TAAAAATATAA
* *
7052032 AAAAAATACAA
1 TAAAAATATAA
*
7052043 TAAAAGAGA-AA
1 TAAAA-ATATAA
7052054 TAAAAAT-TAA
1 TAAAAATATAA
7052064 TAAAAATATAA
1 TAAAAATATAA
7052075 T
1 T
7052076 GTAAAATTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
10 10 0.29
11 23 0.66
12 2 0.06
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.20
Consensus pattern (11 bp):
TAAAAATATAA
Found at i:7052216 original size:14 final size:14
Alignment explanation
Indices: 7052194--7052223 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7052184 TTAATTATTG
7052194 TTAAAAAATAATAA
1 TTAAAAAATAATAA
*
7052208 TTAATAAATAATAA
1 TTAAAAAATAATAA
7052222 TT
1 TT
7052224 TATTTAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TTAAAAAATAATAA
Found at i:7052642 original size:28 final size:26
Alignment explanation
Indices: 7052605--7052656 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
7052595 TTTAAACAAA
7052605 AAATTAATAAATTTTTTAAAAATATATG
1 AAATTAAT-AA-TTTTTAAAAATATATG
* *
7052633 AAATTTATAATTTTTAAAATTATA
1 AAATTAATAATTTTTAAAAATATA
7052657 AAATATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 13 0.59
27 2 0.09
28 7 0.32
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (26 bp):
AAATTAATAATTTTTAAAAATATATG
Found at i:7052664 original size:26 final size:26
Alignment explanation
Indices: 7052617--7052666 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
7052607 ATTAATAAAT
*
7052617 TTTTTAAAAATATATGAAATTTATAA
1 TTTTTAAAAATATATAAAATTTATAA
*
7052643 TTTTTAAAATTATA-AAATATTTAT
1 TTTTTAAAAATATATAAA-ATTTAT
7052667 CATCATCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.10
26 19 0.90
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (26 bp):
TTTTTAAAAATATATAAAATTTATAA
Found at i:7053272 original size:21 final size:21
Alignment explanation
Indices: 7053243--7053295 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
7053233 TAGTTTTACA
7053243 TTATATTTTTATTGAATTTTAT
1 TTAT-TTTTTATTGAATTTTAT
* * *
7053265 TTATTTTTAATTTATTTTTAT
1 TTATTTTTTATTGAATTTTAT
7053286 TTATTTTTTA
1 TTATTTTTTA
7053296 AGAAAGTGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TTATTTTTTATTGAATTTTAT
Found at i:7053277 original size:11 final size:10
Alignment explanation
Indices: 7053246--7053293 Score: 69
Period size: 10 Copynumber: 4.7 Consensus size: 10
7053236 TTTTACATTA
7053246 TATTTTTATT
1 TATTTTTATT
* *
7053256 GAATTTTATT
1 TATTTTTATT
7053266 TATTTTTAATT
1 TATTTTT-ATT
7053277 TATTTTTATT
1 TATTTTTATT
7053287 TATTTTT
1 TATTTTT
7053294 TAAGAAAGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 23 0.70
11 10 0.30
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (10 bp):
TATTTTTATT
Found at i:7053294 original size:11 final size:11
Alignment explanation
Indices: 7053259--7053295 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
7053249 TTTTATTGAA
7053259 TTTTATTTATT
1 TTTTATTTATT
*
7053270 TTTAATTTA-T
1 TTTTATTTATT
7053280 TTTTATTTATT
1 TTTTATTTATT
7053291 TTTTA
1 TTTTA
7053296 AGAAAGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTATTTATT
Found at i:7053376 original size:9 final size:8
Alignment explanation
Indices: 7053344--7053373 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
7053334 ATTAAAAATT
7053344 TATTTTAA
1 TATTTTAA
7053352 TATTTTAA
1 TATTTTAA
7053360 TATTTTAA
1 TATTTTAA
7053368 TATTTT
1 TATTTT
7053374 TAAACAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TATTTTAA
Found at i:7054560 original size:15 final size:15
Alignment explanation
Indices: 7054540--7054569 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7054530 GCTTACTATT
*
7054540 TAAATTAATTTTATA
1 TAAATTAATCTTATA
7054555 TAAATTAATCTTATA
1 TAAATTAATCTTATA
7054570 GGTAATTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAATTAATCTTATA
Done.