Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008488.1 Hibiscus syriacus cultivar Beakdansim tig00111330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12876159
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 29 of 54
Found at i:7054692 original size:22 final size:21
Alignment explanation
Indices: 7054642--7054712 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 21
7054632 ATTTGTTAAG
*
7054642 AATTTAATTTGAGTTAAATTT
1 AATTTAACTTGAGTTAAATTT
*
7054663 ATTCTTAACTTGAGTTAAATTT
1 AAT-TTAACTTGAGTTAAATTT
* *
7054685 AAGTTTAAGTTGAGTT-CATTT
1 AA-TTTAACTTGAGTTAAATTT
7054706 AATTTAA
1 AATTTAA
7054713 AAATTGGTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
20 5 0.12
21 8 0.19
22 29 0.67
23 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.11, T:0.49
Consensus pattern (21 bp):
AATTTAACTTGAGTTAAATTT
Found at i:7055497 original size:60 final size:60
Alignment explanation
Indices: 7055370--7055506 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 60
7055360 GTATATACGT
* *
7055370 ATAGTTTGGGATGAAATTAGAATGTTCAAAAAGTTTGGGGACCAATTTAAAGTGAAAGTC
1 ATAGTTTGGGATGAAATTAGAATGTTCAAAAAGTTTGAGAACCAATTTAAAGTGAAAGTC
*
7055430 ATAGTTTGGGAATGAAATT-GAAATGTTC-AAAAGTTTGAGAACTAATTTAGAA-TGATAA-TC
1 ATAGTTTGGG-ATGAAATTAG-AATGTTCAAAAAGTTTGAGAACCAATTTA-AAGTGA-AAGTC
*
7055490 ATTGTTTGTGGATGAAA
1 ATAGTTTG-GGATGAAA
7055507 CTATAACATT
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
60 47 0.69
61 21 0.31
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (60 bp):
ATAGTTTGGGATGAAATTAGAATGTTCAAAAAGTTTGAGAACCAATTTAAAGTGAAAGTC
Found at i:7059616 original size:13 final size:13
Alignment explanation
Indices: 7059598--7059643 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
7059588 TAAAAATTTA
*
7059598 ATAATAATCTTAT
1 ATAATAATATTAT
7059611 ATAATAATATTAT
1 ATAATAATATTAT
7059624 AT-ATAATATATTAT
1 ATAAT-A-ATATTAT
7059638 ATAATA
1 ATAATA
7059644 TAAACGCCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 2 0.07
13 15 0.52
14 10 0.34
15 2 0.07
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (13 bp):
ATAATAATATTAT
Found at i:7059645 original size:12 final size:13
Alignment explanation
Indices: 7059593--7059645 Score: 58
Period size: 12 Copynumber: 4.1 Consensus size: 13
7059583 TCTTGTAAAA
7059593 ATTTA-ATAATA-
1 ATTTATATAATAT
7059604 ATCTTATATAATAAT
1 AT-TTATATAAT-AT
7059619 ATTATATATAATAT
1 ATT-TATATAATAT
7059633 A-TTATATAATAT
1 ATTTATATAATAT
7059645 A
1 A
7059646 AACGCCACTC
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
11 2 0.05
12 14 0.38
13 6 0.16
14 5 0.14
15 10 0.27
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTTATATAATAT
Found at i:7060306 original size:20 final size:20
Alignment explanation
Indices: 7060281--7060359 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 20
7060271 CTGACAGATG
7060281 ACCCGAAAGATTTACAAATA
1 ACCCGAAAGATTTACAAATA
*
7060301 ACCCG-AAGATTTTACAAATC
1 ACCCGAAAGA-TTTACAAATA
**
7060321 ACCC-AGGGGATTTACAAATA
1 ACCCGA-AAGATTTACAAATA
* *
7060341 ACCCGAAGGTTTTACAAAT
1 ACCCGAAAGATTTACAAAT
7060360 TTGGGGGAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
19 4 0.08
20 42 0.86
21 3 0.06
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.23
Consensus pattern (20 bp):
ACCCGAAAGATTTACAAATA
Found at i:7063633 original size:30 final size:31
Alignment explanation
Indices: 7063572--7063642 Score: 117
Period size: 30 Copynumber: 2.3 Consensus size: 31
7063562 GTTATATGAG
*
7063572 CTATGTGATAAAGGTATGGAAAATGATATGT
1 CTATGTGATAAAGGTATGGAAAATAATATGT
7063603 CTATGTGATAAAGGTATGG-AAATAATATGT
1 CTATGTGATAAAGGTATGGAAAATAATATGT
*
7063633 CTATGAGATA
1 CTATGTGATA
7063643 CACTATGTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 19 0.50
31 19 0.50
ACGTcount: A:0.39, C:0.04, G:0.24, T:0.32
Consensus pattern (31 bp):
CTATGTGATAAAGGTATGGAAAATAATATGT
Found at i:7064356 original size:11 final size:11
Alignment explanation
Indices: 7064342--7064376 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7064332 GTTTTACGGA
*
7064342 AGTACTATAGC
1 AGTACTGTAGC
7064353 AGTACTGTAGC
1 AGTACTGTAGC
*
7064364 CGTACTGTAGC
1 AGTACTGTAGC
7064375 AG
1 AG
7064377 GGTATCGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (11 bp):
AGTACTGTAGC
Found at i:7071135 original size:18 final size:18
Alignment explanation
Indices: 7071112--7071157 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
7071102 CTTGGAGAGG
7071112 AAGAAGGAAAAGGGAAAT
1 AAGAAGGAAAAGGGAAAT
7071130 AAGAAGGAAAAGGGAAAT
1 AAGAAGGAAAAGGGAAAT
7071148 AAGAAGGAAA
1 AAGAAGGAAA
7071158 TGAAGAAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.63, C:0.00, G:0.33, T:0.04
Consensus pattern (18 bp):
AAGAAGGAAAAGGGAAAT
Found at i:7076815 original size:18 final size:17
Alignment explanation
Indices: 7076792--7076855 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 17
7076782 ATTTACGAGG
7076792 GAATTGGAATCTATGAAA
1 GAATTGGAATCTATG-AA
* * *
7076810 GAATTGAAATATGTGAA
1 GAATTGGAATCTATGAA
* * *
7076827 GTAATTGGAATCTGTCAG
1 G-AATTGGAATCTATGAA
7076845 GAATTGGAATC
1 GAATTGGAATC
7076856 CAATTCCATA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
17 13 0.34
18 25 0.66
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (17 bp):
GAATTGGAATCTATGAA
Found at i:7077488 original size:33 final size:33
Alignment explanation
Indices: 7077432--7077551 Score: 143
Period size: 33 Copynumber: 3.5 Consensus size: 33
7077422 CCTAAACCCG
*
7077432 AACCTGACCCGACCCGAATATCACACTTAAAAA
1 AACCCGACCCGACCCGAATATCACACTTAAAAA
* *
7077465 AACCCGACTCGACTCGAATATCACACTTAAAAAA
1 AACCCGACCCGACCCGAATATCACACTT-AAAAA
* *
7077499 ACTCGACCCGACTCGACCCAAATATCACACTT-AAAA
1 A----ACCCGACCCGACCCGAATATCACACTTAAAAA
7077535 AACCCGACCCGACCCGA
1 AACCCGACCCGACCCGA
7077552 CCCGAACAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 11
0.81 0.08 0.12
Matches are distributed among these distances:
32 14 0.19
33 25 0.33
34 6 0.08
36 5 0.07
38 25 0.33
ACGTcount: A:0.40, C:0.36, G:0.10, T:0.14
Consensus pattern (33 bp):
AACCCGACCCGACCCGAATATCACACTTAAAAA
Found at i:7077510 original size:38 final size:36
Alignment explanation
Indices: 7077441--7077557 Score: 159
Period size: 38 Copynumber: 3.2 Consensus size: 36
7077431 GAACCTGACC
7077441 CGACCCGAATATCACACTTAAAAAA---ACCCGACT
1 CGACCCGAATATCACACTTAAAAAACCGACCCGACT
*
7077474 CGACTCGAATATCACACTTAAAAAAACTCGACCCGACT
1 CGACCCGAATATCACACTT-AAAAAAC-CGACCCGACT
* *
7077512 CGACCCAAATATCACACTTAAAAAACCCGACCCGACC
1 CGACCCGAATATCACACTTAAAAAA-CCGACCCGACT
7077549 CGACCCGAA
1 CGACCCGAA
7077558 CAAAATAAAG
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
33 18 0.25
34 6 0.08
37 23 0.32
38 26 0.36
ACGTcount: A:0.40, C:0.36, G:0.10, T:0.14
Consensus pattern (36 bp):
CGACCCGAATATCACACTTAAAAAACCGACCCGACT
Found at i:7079393 original size:12 final size:12
Alignment explanation
Indices: 7079376--7079400 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7079366 TCTTCGGGGA
7079376 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7079388 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7079400 C
1 C
7079401 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:7079609 original size:24 final size:24
Alignment explanation
Indices: 7079575--7079628 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
7079565 CTGAAACATC
*
7079575 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
7079599 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
7079623 ATCAAA
1 ATCAAA
7079629 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:7080438 original size:20 final size:21
Alignment explanation
Indices: 7080413--7080464 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
7080403 TTTTCCTAAT
*
7080413 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
7080433 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
7080454 TCGCAATGCGA
1 TCGCAATGCGA
7080465 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:7080538 original size:20 final size:20
Alignment explanation
Indices: 7080449--7080540 Score: 76
Period size: 20 Copynumber: 4.5 Consensus size: 20
7080439 TGCGAATTTG
* *
7080449 GAAAATCGCAATGCGATACT
1 GAAAATCGCAACGAGATACT
** *
7080469 GACTATCGCAACGAGATAAT
1 GAAAATCGCAACGAGATACT
* *
7080489 ACAAAATCGCAACGAGATTCT
1 -GAAAATCGCAACGAGATACT
*** *
7080510 GACTTTCGCAACGAGATTCT
1 GAAAATCGCAACGAGATACT
7080530 GAAAATCGCAA
1 GAAAATCGCAA
7080541 TCATCTTCAA
Statistics
Matches: 54, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
20 39 0.72
21 15 0.28
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (20 bp):
GAAAATCGCAACGAGATACT
Found at i:7080779 original size:20 final size:20
Alignment explanation
Indices: 7080754--7080829 Score: 125
Period size: 20 Copynumber: 3.8 Consensus size: 20
7080744 CAACGGGGAA
*
7080754 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGGCT
7080774 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
*
7080794 ATCGCAACGCGAAAATGGTT
1 ATCGCAACGCGAAAATGGCT
*
7080814 ATCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
7080830 CGCATTGCGA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:7080870 original size:19 final size:19
Alignment explanation
Indices: 7080848--7080950 Score: 188
Period size: 19 Copynumber: 5.4 Consensus size: 19
7080838 GATTTTCTCG
7080848 TTGCGATTTTTATTTCGCA
1 TTGCGATTTTTATTTCGCA
7080867 TTGCGATTTTTATTTCGCA
1 TTGCGATTTTTATTTCGCA
7080886 TTGCGATTTTTATTTCGCA
1 TTGCGATTTTTATTTCGCA
*
7080905 TTGCGATTTTTATTTCGTA
1 TTGCGATTTTTATTTCGCA
*
7080924 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTTATTTCGCA
7080943 TTGCGATT
1 TTGCGATT
7080951 CTCTCGTTGC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 81 1.00
ACGTcount: A:0.16, C:0.16, G:0.17, T:0.52
Consensus pattern (19 bp):
TTGCGATTTTTATTTCGCA
Found at i:7081060 original size:36 final size:36
Alignment explanation
Indices: 7081020--7081090 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
7081010 TGAATTATGT
7081020 ACAAATAAGAATTATGTACACACCAATTAAACAAAC
1 ACAAATAAGAATTATGTACACACCAATTAAACAAAC
7081056 ACAAATAAGAATTATGTACACACCAATTAAACAAA
1 ACAAATAAGAATTATGTACACACCAATTAAACAAA
7081091 TCAACATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.56, C:0.18, G:0.06, T:0.20
Consensus pattern (36 bp):
ACAAATAAGAATTATGTACACACCAATTAAACAAAC
Found at i:7082578 original size:40 final size:42
Alignment explanation
Indices: 7082534--7082624 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
7082524 CGTCTTCAAC
*
7082534 GATGACAGTGGCCTCTTGAACG-GTAG-GGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGAGTAGAGGGGACTCTTGAGG
* * *
7082574 GATGATAGGGGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGAGTAGAGGGGACTCTTGAGG
*
7082616 AATGACAGG
1 GATGACAGG
7082625 TGAGTCGGGC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 20 0.47
41 2 0.05
42 21 0.49
ACGTcount: A:0.23, C:0.15, G:0.40, T:0.22
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGAGTAGAGGGGACTCTTGAGG
Found at i:7082987 original size:20 final size:20
Alignment explanation
Indices: 7082962--7083034 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
7082952 GAAGAATAGT
*
7082962 TTACTTTCGCAACACGAAAC
1 TTACTTTCGCAACACGAAAA
*
7082982 TTACTTTCGCAACGCGAAAA
1 TTACTTTCGCAACACGAAAA
* * * *
7083002 TGACTATCGCAACGCGGAAA
1 TTACTTTCGCAACACGAAAA
* *
7083022 TGACTATCGCAAC
1 TTACTTTCGCAAC
7083035 GCGGAAATGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.22
Consensus pattern (20 bp):
TTACTTTCGCAACACGAAAA
Found at i:7083035 original size:20 final size:20
Alignment explanation
Indices: 7082988--7083053 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
7082978 AAACTTACTT
*
7082988 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
7083008 TCGCAACGCGGAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
7083028 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
7083048 TCGCAA
1 TCGCAA
7083054 TGCGAAATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.35, C:0.26, G:0.24, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:7083069 original size:19 final size:18
Alignment explanation
Indices: 7083047--7083123 Score: 63
Period size: 19 Copynumber: 4.3 Consensus size: 18
7083037 GGAAATGGCT
7083047 ATCGCAATGCGAAATAAAA
1 ATCGCAAT-CGAAATAAAA
*
7083066 ATCGCAAT-G--A-CAAA
1 ATCGCAATCGAAATAAAA
*
7083080 ATCGCAATACGAAATGAAA
1 ATCGCAAT-CGAAATAAAA
* *
7083099 ATCGCAACTCGAAACACAA
1 ATCGCAA-TCGAAATAAAA
7083118 ATCGCA
1 ATCGCA
7083124 TTGCGATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
14 11 0.23
15 1 0.02
16 1 0.02
17 1 0.02
18 1 0.02
19 31 0.66
20 1 0.02
ACGTcount: A:0.49, C:0.22, G:0.14, T:0.14
Consensus pattern (18 bp):
ATCGCAATCGAAATAAAA
Found at i:7083141 original size:19 final size:19
Alignment explanation
Indices: 7083119--7083215 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
7083109 GAAACACAAA
7083119 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
7083138 TCGCGTTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
7083154 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
7083171 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
7083187 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
7083204 TCGCATTGCGAT
1 TCGCATTGCGAT
7083216 AGCCATTTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 20
0.72 0.06 0.23
Matches are distributed among these distances:
14 12 0.19
15 6 0.10
16 8 0.13
17 8 0.13
18 6 0.10
19 23 0.37
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:7083160 original size:14 final size:14
Alignment explanation
Indices: 7083141--7083199 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
7083131 TTTCATTTCG
7083141 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
7083155 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
7083172 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
7083188 CGTTGCGATTTT
1 CGTTGCGATTTT
7083200 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 18 0.47
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 6 0.16
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:7083166 original size:33 final size:33
Alignment explanation
Indices: 7083124--7083215 Score: 175
Period size: 33 Copynumber: 2.8 Consensus size: 33
7083114 ACAAATCGCA
*
7083124 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
7083157 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
7083190 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
7083216 AGCCATTTCC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:7083234 original size:20 final size:19
Alignment explanation
Indices: 7083200--7083254 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
7083190 TTGCGATTTT
*
7083200 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
7083219 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
7083239 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
7083255 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:7083818 original size:18 final size:18
Alignment explanation
Indices: 7083795--7083842 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
7083785 CGGGTCGATC
7083795 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
*
7083813 AGGTGATAGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
7083831 AGGTGATGGCTC
1 AGGTGATGGCTC
7083843 CCGAAGTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.12, G:0.46, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:7085210 original size:20 final size:20
Alignment explanation
Indices: 7085162--7085220 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
7085152 AATAGTTTCT
* *
7085162 GAAAATGAAAATCGCAACAC
1 GAAAATGACAATCGCAACGC
7085182 GAAAATGACAATCGCAACGC
1 GAAAATGACAATCGCAACGC
** *
7085202 GAATTTGACTATCGCAACG
1 GAAAATGACAATCGCAACG
7085221 AGAGAATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.15
Consensus pattern (20 bp):
GAAAATGACAATCGCAACGC
Found at i:7085509 original size:22 final size:22
Alignment explanation
Indices: 7085482--7085523 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7085472 AGATGGAGAT
7085482 AGACGGATTTCGCCGGAGATCG
1 AGACGGATTTCGCCGGAGATCG
*
7085504 AGACGGATTTCGTCGGAGAT
1 AGACGGATTTCGCCGGAGAT
7085524 GGGTGAGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (22 bp):
AGACGGATTTCGCCGGAGATCG
Found at i:7085743 original size:20 final size:20
Alignment explanation
Indices: 7085713--7085785 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
7085703 GATTATGTAT
*
7085713 TATCTAGTTGCGAAAGTCAG
1 TATCGAGTTGCGAAAGTCAG
* * *
7085733 TATTGAGTTGCGAAATTAAG
1 TATCGAGTTGCGAAAGTCAG
7085753 TATCGAGTTGCGAAAGTCAG
1 TATCGAGTTGCGAAAGTCAG
*
7085773 TATCGCGTTGCGA
1 TATCGAGTTGCGA
7085786 TTTTGTATTA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (20 bp):
TATCGAGTTGCGAAAGTCAG
Found at i:7085812 original size:41 final size:41
Alignment explanation
Indices: 7085693--7085830 Score: 152
Period size: 41 Copynumber: 3.4 Consensus size: 41
7085683 CGCTTTGAAA
* * *
7085693 ATCGCATTGCGATTATGTATTATCTAGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATTTTGTATTATCGAGTTGCGAAAGTCAGT
* * ** * *
7085734 ATTGAGTTGCGAAATT-AAGTATCGAGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATTTTGTATTATCGAGTTGCGAAAGTCAGT
* *
7085774 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCGTTGCGATTTTGTATTATCGAGTTGCGAAAGTCAGT
* *
7085815 ACCGCGTTGCAATTTT
1 ATCGCGTTGCGATTTT
7085831 CCAAATTCGC
Statistics
Matches: 77, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 33 0.43
41 44 0.57
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (41 bp):
ATCGCGTTGCGATTTTGTATTATCGAGTTGCGAAAGTCAGT
Found at i:7085822 original size:20 final size:20
Alignment explanation
Indices: 7085719--7085824 Score: 88
Period size: 20 Copynumber: 5.2 Consensus size: 20
7085709 GTATTATCTA
* * *
7085719 GTTGCGAAAGTCAGTATTGA
1 GTTGCGATAGTCAGTATCGC
* * * *
7085739 GTTGCGAAATTAAGTATCGA
1 GTTGCGATAGTCAGTATCGC
*
7085759 GTTGCGAAAGTCAGTATCGC
1 GTTGCGATAGTCAGTATCGC
* *
7085779 GTTGCGATTTTGT-ATTATCGC
1 GTTGCGA--TAGTCAGTATCGC
*
7085800 GTTGCGATAGTCAGTACCGC
1 GTTGCGATAGTCAGTATCGC
7085820 GTTGC
1 GTTGC
7085825 AATTTTCCAA
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
19 3 0.04
20 52 0.73
21 14 0.20
22 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (20 bp):
GTTGCGATAGTCAGTATCGC
Found at i:7085846 original size:41 final size:41
Alignment explanation
Indices: 7085760--7085848 Score: 99
Period size: 41 Copynumber: 2.2 Consensus size: 41
7085750 AAGTATCGAG
* * * ** * *
7085760 TTGCGAAAGTCAGTATCGCGTTGCGATTTTGTATTATCGCG
1 TTGCGATAGTCAGTACCGCGTTGCAATTTTCAAATATCGCA
7085801 TTGCGATAGTCAGTACCGCGTTGCAATTTTCCAAAT-TCGCA
1 TTGCGATAGTCAGTACCGCGTTGCAATTTT-CAAATATCGCA
7085842 TTGCGAT
1 TTGCGAT
7085849 TTACTTATTC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 38 0.95
42 2 0.05
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (41 bp):
TTGCGATAGTCAGTACCGCGTTGCAATTTTCAAATATCGCA
Found at i:7085909 original size:21 final size:22
Alignment explanation
Indices: 7085857--7085909 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
7085847 ATTTACTTAT
7085857 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
7085878 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
7085899 TCGCATTGCGA
1 TCGCATTGCGA
7085910 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:7090109 original size:54 final size:54
Alignment explanation
Indices: 7090040--7090355 Score: 411
Period size: 54 Copynumber: 5.8 Consensus size: 54
7090030 TTGCATTTAC
* * *
7090040 CGTATTGACATTATGTGTGCAACCTATGAAATTCATAATGAGTATATGAATTTT
1 CGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTT
* *
7090094 CGTATTGGCACTATGTGTGCAACCTAAGAAATTAATAATGAGTTTATGAATTTT
1 CGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTT
* * * *
7090148 CCGTATTGACACTATGTGTGCAACTTAAGAAAATAATAATGAGTTTATGAATTTC
1 -CGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTT
* * *
7090203 CGTATTGGCACTATGTGTTCAGCCTAAGAAATTCATAATGAGTTTATGAA-TTT
1 CGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTT
* * * *
7090256 CGTATTGGCATTATGTGTGCAACCTAAGAAATTCATAATAACTTTATGAA-TTT
1 CGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTT
* * * *
7090309 CTGTATTGATACTATGTGTGCAACCTCACATAATTCATAATGCGTTT
1 C-GTATTGACACTATGTGTGCAACCTAAGA-AATTCATAATGAGTTT
7090356 GTGACTTAAC
Statistics
Matches: 230, Mismatches: 29, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
53 51 0.22
54 116 0.50
55 63 0.27
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (54 bp):
CGTATTGACACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTT
Found at i:7090230 original size:109 final size:109
Alignment explanation
Indices: 7090034--7090334 Score: 435
Period size: 109 Copynumber: 2.8 Consensus size: 109
7090024 TATGTGTTGC
* * * *
7090034 ATTTACCGTATTGACATTATGTGTGCAACCTATGAAATTCATAATGAGTATATGAATTTTCGTAT
1 ATTTTCCGTATTGACATTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTAT
7090099 TGGCACTATGTGTGCAACCTAAGAAATTAATAATGAGTTTATGA
66 TGGCACTATGTGTGCAACCTAAGAAATTAATAATGAGTTTATGA
* * * *
7090143 ATTTTCCGTATTGACACTATGTGTGCAACTTAAGAAAATAATAATGAGTTTATGAATTTCCGTAT
1 ATTTTCCGTATTGACATTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTAT
* * *
7090208 TGGCACTATGTGTTCAGCCTAAGAAATTCATAATGAGTTTATGA
66 TGGCACTATGTGTGCAACCTAAGAAATTAATAATGAGTTTATGA
* * * *
7090252 A-TTT-CGTATTGGCATTATGTGTGCAACCTAAGAAATTCATAATAACTTTATGAATTTCTGTAT
1 ATTTTCCGTATTGACATTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTAT
**
7090315 TGATACTATGTGTGCAACCT
66 TGGCACTATGTGTGCAACCT
7090335 CACATAATTC
Statistics
Matches: 169, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
107 67 0.40
108 3 0.02
109 99 0.59
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.38
Consensus pattern (109 bp):
ATTTTCCGTATTGACATTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTAT
TGGCACTATGTGTGCAACCTAAGAAATTAATAATGAGTTTATGA
Found at i:7090781 original size:22 final size:23
Alignment explanation
Indices: 7090737--7090781 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
7090727 GTTAGTGAAC
* *
7090737 GTTTTATTATTATCAAATTAGAAA
1 GTTTTATGATTA-CAAATAAGAAA
7090761 GTTTTATGATTA-AAATAAGAA
1 GTTTTATGATTACAAATAAGAA
7090782 CTTTACTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
24 11 0.58
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.42
Consensus pattern (23 bp):
GTTTTATGATTACAAATAAGAAA
Found at i:7097038 original size:54 final size:54
Alignment explanation
Indices: 7096914--7097258 Score: 493
Period size: 54 Copynumber: 6.4 Consensus size: 54
7096904 TATGTGTTGC
* *
7096914 ATTTACCGTATTGGCACTATGTGTGCAGCCTAAGAAATTC---AT--GTTTATAA
1 ATTT-CCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGA
**
7096964 ATTTTTGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGA
1 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGA
7097018 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGA
1 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGA
* *
7097072 ATTTTCGTATTGGAACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGA
1 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGA
* *
7097126 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATTATAAGTTTATGA
1 ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGA
* * * * *
7097180 ATTTTCGTATTGGCACTATGTGTGCAACCCCACGTAATTCATAATGAGTTTGTGA
1 ATTTCCGTATTGGCACTATGTGTGCAA-CCTAAGAAATTCATAATGAGTTTATGA
* * *
7097235 ATTACCGTATCGGCACTACGTGTG
1 ATTTCCGTATTGGCACTATGTGTG
7097259 AGAAACCATT
Statistics
Matches: 266, Mismatches: 23, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
49 32 0.12
50 4 0.02
52 2 0.01
54 187 0.70
55 41 0.15
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (54 bp):
ATTTCCGTATTGGCACTATGTGTGCAACCTAAGAAATTCATAATGAGTTTATGA
Found at i:7101523 original size:29 final size:29
Alignment explanation
Indices: 7101481--7101544 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
7101471 CTAATGAATC
7101481 AAGCTCTGATACAATTGTTAGGATTGTTG
1 AAGCTCTGATACAATTGTTAGGATTGTTG
7101510 AAGCTCTGATACAATTGTTAGGATTGTTG
1 AAGCTCTGATACAATTGTTAGGATTGTTG
7101539 AAGCTC
1 AAGCTC
7101545 AAATGACAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.36
Consensus pattern (29 bp):
AAGCTCTGATACAATTGTTAGGATTGTTG
Found at i:7102695 original size:17 final size:16
Alignment explanation
Indices: 7102649--7102704 Score: 94
Period size: 16 Copynumber: 3.4 Consensus size: 16
7102639 CTACGTGACT
7102649 GGTTAAACAAGTGATC
1 GGTTAAACAAGTGATC
7102665 GGTTAAACAAGTGATC
1 GGTTAAACAAGTGATC
*
7102681 GGTTAAACAAAGTGACC
1 GGTTAAAC-AAGTGATC
7102698 GGTTAAA
1 GGTTAAA
7102705 ATTTAGATTG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
16 24 0.63
17 14 0.37
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.23
Consensus pattern (16 bp):
GGTTAAACAAGTGATC
Found at i:7102718 original size:33 final size:32
Alignment explanation
Indices: 7102643--7102704 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
7102633 AAAAAACTAC
* *
7102643 GTGACTGGTTAAACAAGTGATCGGTTAAACAA
1 GTGATTGGTTAAACAAGTGACCGGTTAAACAA
*
7102675 GTGATCGGTTAAACAAAGTGACCGGTTAAA
1 GTGATTGGTTAAAC-AAGTGACCGGTTAAA
7102705 ATTTAGATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 12 0.46
33 14 0.54
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (32 bp):
GTGATTGGTTAAACAAGTGACCGGTTAAACAA
Found at i:7102811 original size:23 final size:23
Alignment explanation
Indices: 7102764--7102813 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
7102754 AATAACATAT
* **
7102764 TAGGTAGCGCTTATGTAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
*
7102787 TAGGTAGCGCTTCTATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
7102810 TAGG
1 TAGG
7102814 CATTTAACCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:7102873 original size:87 final size:87
Alignment explanation
Indices: 7102727--7102885 Score: 282
Period size: 87 Copynumber: 1.8 Consensus size: 87
7102717 TATGTTATAT
*
7102727 CATTTAACCAGAAATATTATAAAGTACAATAACATATTAGGTAGCGCTTATGTAATGTAATAGGT
1 CATTTAACCAGAAATATTATAAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
7102792 AGCGCTTCTATAATAAAATAGG
66 AGCGCTTCTATAATAAAATAGG
* * *
7102814 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCTCTTATATAATGTAATAGGT
1 CATTTAACCAGAAATATTATAAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
7102879 AGCGCTT
66 AGCGCTT
7102886 ATATTGACCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 68 1.00
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.32
Consensus pattern (87 bp):
CATTTAACCAGAAATATTATAAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
AGCGCTTCTATAATAAAATAGG
Found at i:7103557 original size:200 final size:197
Alignment explanation
Indices: 7102884--7103595 Score: 765
Period size: 201 Copynumber: 3.5 Consensus size: 197
7102874 TAGGTAGCGC
* ** * * * *
7102884 TTATATTGACCTATTTTCAAAGTAAATC-GGTATATTTATA-CTGATAACATTGCAAATTTACCT
1 TTATGTTGACCTATTTTCTCA-TAAAACTGGTATATTTATATC-GGTTACATTGTAAATTTACCT
* *
7102947 ATTACATTATAATTATCGGTTTCGATATTTTTTGGATCGATACAATTTTAAATGTATCGACACTT
64 ATTACATTATAATTATCTGTTTCGATATTTTTGGGATCGATACAATTTTAAATGTATCGACACTT
* * *
7103012 TATGCTTGCACCTCGTTGGGCATTCATATTTCATTCTGGAAAAAAGTATCGACACAAACTAAAAA
129 TATGCTTGCACCTCGTTGGGCATTC--A-TT-A---TGGACAAAAGTATCGACACAAATTAACAA
7103077 TGTGTCGATACA
187 -GTGTCGATACA
* * * * *
7103089 TTAT-TTAGACCTATTTTCTCATAAAATTGTTATATTTATACCGGATATATTGTAAATTTACCTA
1 TTATGTT-GACCTATTTTCTCATAAAACTGGTATATTTATATCGGTTACATTGTAAATTTACCTA
* * * * *
7103153 TCACGTTGTAATTTTC-GTTTCGATGTTTTTGGGATCGATACAATTTTAAATGTATCGACACTTT
65 TTACATTATAATTATCTGTTTCGATATTTTTGGGATCGATACAATTTTAAATGTATCGACAC---
* ** * *
7103217 TTTTTTTTTGCACCTCGTTGGGAATTCATTATGGACAAAATGTATCGACACAAATTTAGCAAGTG
127 TTTATGCTTGCACCTCGTTGGGCATTCATTATGGACAAAA-GTATCGACACAAA-TTAACAAGTG
* *
7103282 TCTATACT
190 TCGATACA
* * *
7103290 TTATGCTGACCTATTTTCTCATAAAACCGGTATATTTATATCGGTTACTTTGTAAATTTACCTAT
1 TTATGTTGACCTATTTTCTCATAAAACTGGTATATTTATATCGGTTACATTGTAAATTTACCTAT
* *
7103355 TACATTATAATTATCTGTTTCTATATTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTT
66 TACATTATAATTATCTGTTTCGATATTTTTGGGATCGATACAATTT--TAAATGTATCGACACTT
* * *
7103419 TATGCATGCACCTCGTTTGGGCATTCATTATGGACAATAAGTACCGACACAAATTCCACAAGTGT
129 TATGCTTGCACCTCG-TTGGGCATTCATTATGGACAA-AAGTATCGACACAAATT-AACAAGTGT
7103484 CGATACA
191 CGATACA
* * * * * *
7103491 TTATGTTGATCTGTTTTCTAAT-TAACTGGTATATTTATATCGGTTACATTGTTAATTTAGCTAT
1 TTATGTTGACCTATTTTCTCATAAAACTGGTATATTTATATCGGTTACATTGTAAATTTACCTAT
*
7103555 TACATTATAATTAT-TGGTTTTGATATTTTTTGGG-TCGATAC
66 TACATTATAATTATCT-GTTTCGATA-TTTTTGGGATCGATAC
7103596 TTGTAGAAAA
Statistics
Matches: 428, Mismatches: 62, Indels: 39
0.81 0.12 0.07
Matches are distributed among these distances:
199 1 0.00
200 88 0.21
201 161 0.38
202 30 0.07
203 16 0.04
204 51 0.12
205 57 0.13
206 1 0.00
207 23 0.05
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.42
Consensus pattern (197 bp):
TTATGTTGACCTATTTTCTCATAAAACTGGTATATTTATATCGGTTACATTGTAAATTTACCTAT
TACATTATAATTATCTGTTTCGATATTTTTGGGATCGATACAATTTTAAATGTATCGACACTTTA
TGCTTGCACCTCGTTGGGCATTCATTATGGACAAAAGTATCGACACAAATTAACAAGTGTCGATA
CA
Found at i:7108103 original size:200 final size:200
Alignment explanation
Indices: 7107655--7108411 Score: 1250
Period size: 200 Copynumber: 3.8 Consensus size: 200
7107645 CGCATAATTT
* *
7107655 AAAAGTATCGACACAATATTAAAAAGTATCGATACATGTTGTAGACCTATTATCTCATAAAACCG
1 AAAAGTATCGACACAATATTAAAAAGTATCGATACATATTGTAGACCTATTCTCTCATAAAACCG
* * *
7107720 GTATATTTATATA-GGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATATTT
66 GTATATTTATA-ACGGTTATATTACAAAATTACCTATTACATTATAATTATCGGTTACGATGTTT
* * * * *
7107784 TTGGGATCGACAC-TTTTGAAAATGTATCGACACTTTATTCGTTCACCCTTTTTGGCATCTATTC
130 TTGGAATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTAACCCTTTTTGGCATCCATTC
*
7107848 TGGATA
195 TGGACA
* * *
7107854 AAAAGTATCGACACAATATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTG
1 AAAAGTATCGACACAATATTAAAAAGTATCGATACATATTGTAGACCTATTCTCTCATAAAACCG
7107919 GTATATTTATAACGGTTATATTACAAAATTACCTATTACATTATAATTATCGGTTACGATGTTTT
66 GTATATTTATAACGGTTATATTACAAAATTACCTATTACATTATAATTATCGGTTACGATGTTTT
*
7107984 TGGAATCGACACTTTTTGAAAATATATCGACACTTTGTGCGTTAACCCTTTTTGGCATCCATTCT
131 TGGAATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTAACCCTTTTTGGCATCCATTCT
7108049 GGACA
196 GGACA
*
7108054 AAAAGTATCGACAGAATATTAAAAAGTATCGATACATATTGTAGACCTATTCTCTCATAAAACCG
1 AAAAGTATCGACACAATATTAAAAAGTATCGATACATATTGTAGACCTATTCTCTCATAAAACCG
* *
7108119 GTATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATCGATTACGATGTTTT
66 GTATATTTATAACGGTTATATTACAAAATTACCTATTACATTATAATTATCGGTTACGATGTTTT
*
7108184 TGGAATCGACACTTTTTGAAAATGTATTGACACTTTGTGCGTTAACCCTTTTTGGCATCCATTCT
131 TGGAATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTAACCCTTTTTGGCATCCATTCT
7108249 GGACA
196 GGACA
* * *
7108254 AAACGTATCGACACAATATTAAAAAGTGTCGATACATATTGTAGACCTATTCTCTCATAAAATCG
1 AAAAGTATCGACACAATATTAAAAAGTATCGATACATATTGTAGACCTATTCTCTCATAAAACCG
* *
7108319 GTATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATCAGTCT-CGATGTTT
66 GTATATTTATAACGGTTATATTACAAAATTACCTATTACATTATAATTATCGGT-TACGATGTTT
*
7108383 TTGGGATCGACACTTTTTGAAAATGTATC
130 TTGGAATCGACACTTTTTGAAAATGTATC
7108412 TGTTGAGTTA
Statistics
Matches: 526, Mismatches: 29, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
198 1 0.00
199 133 0.25
200 391 0.74
201 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (200 bp):
AAAAGTATCGACACAATATTAAAAAGTATCGATACATATTGTAGACCTATTCTCTCATAAAACCG
GTATATTTATAACGGTTATATTACAAAATTACCTATTACATTATAATTATCGGTTACGATGTTTT
TGGAATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTAACCCTTTTTGGCATCCATTCT
GGACA
Found at i:7111850 original size:20 final size:21
Alignment explanation
Indices: 7111798--7111858 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
7111788 TTCCCCTGTG
*
7111798 GGGGGGATCGGTTCCTATTCAAA
1 GGGGGGATCGGTTCC--CTCAAA
* *
7111821 GGGGGAATCGGTTCCCTC-AT
1 GGGGGGATCGGTTCCCTCAAA
*
7111841 GGGGGGATCGATTCCCTC
1 GGGGGGATCGGTTCCCTC
7111859 TGCACCAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
20 17 0.52
21 2 0.06
23 14 0.42
ACGTcount: A:0.16, C:0.23, G:0.36, T:0.25
Consensus pattern (21 bp):
GGGGGGATCGGTTCCCTCAAA
Found at i:7117869 original size:21 final size:21
Alignment explanation
Indices: 7117843--7117884 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7117833 ATTTGAATAT
7117843 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7117864 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7117885 CCCATTTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:7117946 original size:21 final size:21
Alignment explanation
Indices: 7117913--7117952 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
7117903 GTTTTGCAGA
*
7117913 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
7117935 AAAA-CATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
7117953 AGATATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:7118235 original size:32 final size:34
Alignment explanation
Indices: 7118167--7118237 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
7118157 CTTTTGTAAA
7118167 AGGGAAAGGTTCTAGCTTAGCCCGTGTAAAAACT
1 AGGGAAAGGTTCTAGCTTAGCCCGTGTAAAAACT
*
7118201 AGGGAAAGGTTCTAGTTTAGCCCG-G-AAAAACT
1 AGGGAAAGGTTCTAGCTTAGCCCGTGTAAAAACT
7118233 AGGGA
1 AGGGA
7118238 GTTGTAAGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 12 0.33
33 1 0.03
34 23 0.64
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (34 bp):
AGGGAAAGGTTCTAGCTTAGCCCGTGTAAAAACT
Found at i:7121878 original size:200 final size:200
Alignment explanation
Indices: 7121525--7122225 Score: 987
Period size: 200 Copynumber: 3.5 Consensus size: 200
7121515 TTATATCCCC
* * *
7121525 AAGTATCGATACATCTTGTAGACCTATTCTCTCATAAAACCGATATATTTATACCGGTTACATTG
1 AAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACCGGTATATTTATACCGGTTACATTG
* *
7121590 AATAATTACCTATTACAATATAATTATGGGTTTCGATGTATTTGGGATCGACACTTTTTGAAAAT
66 AAAAATTACCTATTACATTATAATTATGGGTTTCGATGTATTTGGGATCGACACTTTTTGAAAAT
* *
7121655 GTACCGACACTTGATTTGTTCACCCTTTTTGGCATTCATTCTGGATAAAAAGTATCGACACAAAA
131 GTACCGACACTTTATTCGTTCACCCTTTTTGGCATTCATTCTGGATAAAAAGTATCGACACAAAA
7121720 TTAAA
196 TTAAA
* * * *
7121725 AAGTGTTGATACATGTAGTAGACCTATTCTCTCATAAACCCGGTATATTTATATCGGTTACATTG
1 AAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACCGGTATATTTATACCGGTTACATTG
7121790 AAAAATTACCTATTACATTATAATTATGGGTTTCGATGTATTTGGGATCGACACTTTTTGAAAAT
66 AAAAATTACCTATTACATTATAATTATGGGTTTCGATGTATTTGGGATCGACACTTTTTGAAAAT
* *
7121855 GTACCGACACTTTATTCGTTCACCCTTTTTGGCATTCATTCTGGACAAAAAGTATCGTCACAAAA
131 GTACCGACACTTTATTCGTTCACCCTTTTTGGCATTCATTCTGGATAAAAAGTATCGACACAAAA
7121920 TTAAA
196 TTAAA
* **
7121925 AAGTGTCGATACATGTTGTATACCTATTCTCTCATAAAACTTGTATATTTATACCGGTTACATTG
1 AAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACCGGTATATTTATACCGGTTACATTG
* * *
7121990 AAAAATTACCTATTACATTATACTTATAGGTTTCGATGT-TTCTGGGATCGACACTTTTTAAAAA
66 AAAAATTACCTATTACATTATAATTATGGGTTTCGATGTATT-TGGGATCGACACTTTTTGAAAA
* * ** * * * * * *
7122054 TGTATCGACACTATATGGGTGCA-CC-TTTTGGGATTTGATTCT-GTTCCAAAAGTATCGACACG
130 TGTACCGACACTTTATTCGTTCACCCTTTTTGGCA-TTCATTCTGGAT-AAAAAGTATCGACACA
** ** *
7122116 ATCTCCAC
193 AAATTAAA
* * **
7122124 AAGTGTCAATACATGTTGTAAACCTATTCTCTCATAAAATTGGTATATTTATACCGGTTACATTG
1 AAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACCGGTATATTTATACCGGTTACATTG
* *
7122189 AAGAATTACCTATTACATTATACTTATGGGTTTCGAT
66 AAAAATTACCTATTACATTATAATTATGGGTTTCGAT
7122226 ATTTCTGGGA
Statistics
Matches: 452, Mismatches: 46, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
198 8 0.02
199 123 0.27
200 321 0.71
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (200 bp):
AAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACCGGTATATTTATACCGGTTACATTG
AAAAATTACCTATTACATTATAATTATGGGTTTCGATGTATTTGGGATCGACACTTTTTGAAAAT
GTACCGACACTTTATTCGTTCACCCTTTTTGGCATTCATTCTGGATAAAAAGTATCGACACAAAA
TTAAA
Found at i:7122957 original size:149 final size:149
Alignment explanation
Indices: 7122756--7123061 Score: 603
Period size: 149 Copynumber: 2.1 Consensus size: 149
7122746 TTAATATTCG
7122756 CGATCGATCCCACACTCCAACAACCTATATTCAAATTGTCAGAACGTTATGTATTGTAAACCACA
1 CGATCGATCCCACACTCCAACAACCTATATTCAAATTGTCAGAACGTTATGTATTGTAAACCACA
*
7122821 ACATTCAATCTACGACTTTTAACAATTTAACCGCAAACGAATTTTTAATTCCACTTACAAAATCA
66 ACATTCAATCTACGACTTTTAACAATTTAACCGCAAACAAATTTTTAATTCCACTTACAAAATCA
7122886 CCAGTTGCCCCTGTAGAAC
131 CCAGTTGCCCCTGTAGAAC
7122905 CGATCGATCCCACACTCCAACAACCTATATTCAAATTGTCAGAACGTTATGTATTGTAAACCACA
1 CGATCGATCCCACACTCCAACAACCTATATTCAAATTGTCAGAACGTTATGTATTGTAAACCACA
7122970 ACATTCAATCTACGACTTTTAACAATTTAACCGCAAACAAATTTTTAATTCCACTTACAAAATCA
66 ACATTCAATCTACGACTTTTAACAATTTAACCGCAAACAAATTTTTAATTCCACTTACAAAATCA
7123035 CCAGTTGCCCCTGTAGAAC
131 CCAGTTGCCCCTGTAGAAC
7123054 CGATCGAT
1 CGATCGAT
7123062 TCCATCCACA
Statistics
Matches: 156, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 156 1.00
ACGTcount: A:0.36, C:0.27, G:0.09, T:0.28
Consensus pattern (149 bp):
CGATCGATCCCACACTCCAACAACCTATATTCAAATTGTCAGAACGTTATGTATTGTAAACCACA
ACATTCAATCTACGACTTTTAACAATTTAACCGCAAACAAATTTTTAATTCCACTTACAAAATCA
CCAGTTGCCCCTGTAGAAC
Found at i:7124392 original size:21 final size:18
Alignment explanation
Indices: 7124354--7124410 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
7124344 TCCTCCTCAT
*
7124354 TTCCTCCATCTTTTCTTC
1 TTCCTCCCTCTTTTCTTC
7124372 TTCCTCCCTCTTTTCTTC
1 TTCCTCCCTCTTTTCTTC
7124390 TTCCTCCCTCTTTTCTTC
1 TTCCTCCCTCTTTTCTTC
7124408 TTC
1 TTC
7124411 ATATTTTTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.02, C:0.42, G:0.00, T:0.56
Consensus pattern (18 bp):
TTCCTCCCTCTTTTCTTC
Found at i:7124632 original size:33 final size:33
Alignment explanation
Indices: 7124595--7124660 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
7124585 CATCTTAAGA
*
7124595 TCACCCCTTAACACCTCAACTTCTTTCACCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
*
7124628 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
7124661 CCATCTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.23, C:0.47, G:0.00, T:0.30
Consensus pattern (33 bp):
TCACCCCTCAACACCTCAACTTCTTTCACCACT
Found at i:7124734 original size:21 final size:21
Alignment explanation
Indices: 7124709--7124773 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
7124699 CACCTTATGC
*
7124709 CTCTCAAGTGTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
7124730 CTCTCAAGTTTCTCTTTGACT
1 CTCTCAAGTTTCTCTTCGACT
7124751 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
7124772 CT
1 CT
7124774 TGATTGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.14, C:0.32, G:0.11, T:0.43
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:7127266 original size:182 final size:182
Alignment explanation
Indices: 7126953--7127430 Score: 778
Period size: 182 Copynumber: 2.6 Consensus size: 182
7126943 TACACGTACC
* *
7126953 TATTAAAGTATCGACACTTTTAATATATCCGGTAGCGATTTACCGGTTTTATCATTTCGATACCG
1 TATTAAAGTATCGACACTTTCAATATATCCGGTAGCAATTTACCGGTTTTATCATTTCGATACCG
* *
7127018 GTTTTGTCATATTTTTACATGTTATATCGTTGTGGATCGATACATTTTTTTAAAGTATCAACACT
66 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCAACACT
*
7127083 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
131 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGACGATACTTA
7127135 TATTAAAGTATCGACACTTTCAATATATCCGGTAGCAATTTACCGGTTTTATCATTTCGATACCG
1 TATTAAAGTATCGACACTTTCAATATATCCGGTAGCAATTTACCGGTTTTATCATTTCGATACCG
* *
7127200 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATTCATTTTTATAAAGTATCGACACT
66 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCAACACT
* *
7127265 TTATAGGCGCTGAAACTGCTTCTCTTTTAAATTCACAAAGTGACTATACTTA
131 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGACGATACTTA
* * * * *
7127317 TATTAAAGTATCGATACTTTCAATATATCCGGTAGCACTTTACCGGTATTGTCTTTTCG-TGACC
1 TATTAAAGTATCGACACTTTCAATATATCCGGTAGCAATTTACCGGTTTTATCATTTCGAT-ACC
* * * *
7127381 GGTTCTGTCATATTTTTACCTGTTATATTGATATGGATCGATACATTTTT
65 GGTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTT
7127431 TATTTGGATC
Statistics
Matches: 276, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
181 1 0.00
182 275 1.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.42
Consensus pattern (182 bp):
TATTAAAGTATCGACACTTTCAATATATCCGGTAGCAATTTACCGGTTTTATCATTTCGATACCG
GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCAACACT
TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGACGATACTTA
Found at i:7130789 original size:37 final size:39
Alignment explanation
Indices: 7130739--7130821 Score: 93
Period size: 37 Copynumber: 2.2 Consensus size: 39
7130729 ATATTAAAAG
*
7130739 AGAAATATAT-AAA-AAATGAAGAAAATGTTAAATTTCAAA
1 AGAAATATATAAAATAAATGAA-AAAATATT-AATTTCAAA
*
7130778 AGAAAT-T-TAAAATAAATGAAAAAATATTAATTTTAAA
1 AGAAATATATAAAATAAATGAAAAAATATTAATTTCAAA
*
7130815 ATAAATA
1 AGAAATA
7130822 AAATAAAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
37 14 0.37
38 11 0.29
39 13 0.34
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (39 bp):
AGAAATATATAAAATAAATGAAAAAATATTAATTTCAAA
Found at i:7130824 original size:35 final size:38
Alignment explanation
Indices: 7130739--7130828 Score: 98
Period size: 39 Copynumber: 2.4 Consensus size: 38
7130729 ATATTAAAAG
*
7130739 AGAAATATATAAA-AAATGAAGAAAATGTTAAATTTCAAA
1 AGAAAT-TA-AAATAAATGAAGAAAATATTAAATTTCAAA
*
7130778 AGAAATTTAAAATAAATGAA-AAAATATT-AATTTTAAA
1 AGAAA-TTAAAATAAATGAAGAAAATATTAAATTTCAAA
*
7130815 ATAAA-TAAAATAAA
1 AGAAATTAAAATAAA
7130829 AAGAGAAATA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
35 9 0.20
37 12 0.26
38 10 0.22
39 14 0.30
40 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.28
Consensus pattern (38 bp):
AGAAATTAAAATAAATGAAGAAAATATTAAATTTCAAA
Found at i:7131998 original size:17 final size:17
Alignment explanation
Indices: 7131941--7131991 Score: 102
Period size: 17 Copynumber: 3.0 Consensus size: 17
7131931 TGTTGGATCA
7131941 AGTCTGCTTGCACGGTT
1 AGTCTGCTTGCACGGTT
7131958 AGTCTGCTTGCACGGTT
1 AGTCTGCTTGCACGGTT
7131975 AGTCTGCTTGCACGGTT
1 AGTCTGCTTGCACGGTT
7131992 GGGCTGCGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.12, C:0.24, G:0.29, T:0.35
Consensus pattern (17 bp):
AGTCTGCTTGCACGGTT
Found at i:7132063 original size:3 final size:3
Alignment explanation
Indices: 7132055--7132108 Score: 57
Period size: 3 Copynumber: 19.7 Consensus size: 3
7132045 TAAAAAGAAT
7132055 TAA TAA TAA TAA TAA TAA -AA TAAA TAA T-A TAA T-A TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
7132097 T-A TAA T-A TAA TA
1 TAA TAA TAA TAA TA
7132109 TGTAATGAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
2 12 0.27
3 29 0.66
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7132107 original size:5 final size:5
Alignment explanation
Indices: 7132057--7132109 Score: 72
Period size: 5 Copynumber: 10.4 Consensus size: 5
7132047 AAAAGAATTA
*
7132057 ATAAT AATAAT AATAAA ATAA- ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT -ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
7132108 AT
1 AT
7132110 GTAATGAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
4 4 0.09
5 31 0.69
6 10 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:7132268 original size:36 final size:36
Alignment explanation
Indices: 7132213--7132497 Score: 281
Period size: 36 Copynumber: 7.8 Consensus size: 36
7132203 AAAAAAAAAA
* *
7132213 TCAAAACTATATAATATATATTCTTTCAAAAATTGTTT
1 TCAAAATTATATAATATAT-GT-TTTCAAAAATTGTTT
*
7132251 TCGAAATTATATAATATATATGTTTTCAAAAATTGTTT
1 TCAAAATTATAT-A-ATATATGTTTTCAAAAATTGTTT
* *
7132289 TCAAAACTATATAATATATGTTTTCAAAAAATGTTT
1 TCAAAATTATATAATATATGTTTTCAAAAATTGTTT
* * *
7132325 TTAAAATTATATATTATACGTTTTCAAAAATGTGTTT
1 TCAAAATTATATAATATATGTTTTCAAAAAT-TGTTT
*
7132362 TCAAAACTATATAATATATGTTTTCAAAAATGTGTTT
1 TCAAAATTATATAATATATGTTTTCAAAAAT-TGTTT
* * *** *
7132399 TCAAAATAATATAATATATGTTTTTAAATCGTATTT
1 TCAAAATTATATAATATATGTTTTCAAAAATTGTTT
** * *
7132435 TCAAAACCATAT--TATATATTTTC-AAAATCGGTTT
1 TCAAAATTATATAATATATGTTTTCAAAAAT-TGTTT
* * *
7132469 TTAAAATTATATATTATATGCTTT-AAAAA
1 TCAAAATTATATAATATATGTTTTCAAAAA
7132498 CGTTTAAATT
Statistics
Matches: 204, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
33 2 0.01
34 21 0.10
36 74 0.36
37 64 0.31
38 35 0.17
39 2 0.01
40 6 0.03
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (36 bp):
TCAAAATTATATAATATATGTTTTCAAAAATTGTTT
Found at i:7132373 original size:37 final size:37
Alignment explanation
Indices: 7132213--7132497 Score: 272
Period size: 37 Copynumber: 7.8 Consensus size: 37
7132203 AAAAAAAAAA
7132213 TCAAAACTATATAATATATAT-TCTTTCAAAAAT-TGTTT
1 TCAAAACTATAT-AT-TATATGT-TTTCAAAAATGTGTTT
* *
7132251 TCGAAATTATATAATATATATGTTTTCAAAAAT-TGTTT
1 TCAAAACTATAT-AT-TATATGTTTTCAAAAATGTGTTT
*
7132289 TCAAAACTATATAATATATGTTTTCAAAAAATGT-TTT
1 TCAAAACTATATATTATATGTTTTC-AAAAATGTGTTT
* *
7132326 T-AAAATTATATATTATACGTTTTCAAAAATGTGTTT
1 TCAAAACTATATATTATATGTTTTCAAAAATGTGTTT
*
7132362 TCAAAACTATATAATATATGTTTTCAAAAATGTGTTT
1 TCAAAACTATATATTATATGTTTTCAAAAATGTGTTT
* * *
7132399 TCAAAA-TAATATAATATATGTTTT--TAAATCGTATTT
1 TCAAAACT-ATATATTATATGTTTTCAAAAAT-GTGTTT
* *
7132435 TCAAAAC--CATATTATATATTTTC-AAAATCG-GTTT
1 TCAAAACTATATATTATATGTTTTCAAAAAT-GTGTTT
* * *
7132469 TTAAAATTATATATTATATGCTTT-AAAAA
1 TCAAAACTATATATTATATGTTTTCAAAAA
7132498 CGTTTAAATT
Statistics
Matches: 212, Mismatches: 23, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
34 20 0.09
35 18 0.08
36 63 0.30
37 65 0.31
38 45 0.21
39 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (37 bp):
TCAAAACTATATATTATATGTTTTCAAAAATGTGTTT
Found at i:7132381 original size:73 final size:73
Alignment explanation
Indices: 7132213--7132497 Score: 323
Period size: 73 Copynumber: 3.9 Consensus size: 73
7132203 AAAAAAAAAA
* * **
7132213 TCAAAACTATATAATATATATTCTTTCAAAAATTGTTTTCGAAATTATATAATATATATGTTTTC
1 TCAAAACTATATAATATAT-GT-TTTCAAAAAATGTTTTTAAAATTATAT-AT-TATATGTTTTC
7132278 AAAAAT-TGTTT
62 AAAAATGTGTTT
*
7132289 TCAAAACTATATAATATATGTTTTCAAAAAATGTTTTTAAAATTATATATTATACGTTTTCAAAA
1 TCAAAACTATATAATATATGTTTTCAAAAAATGTTTTTAAAATTATATATTATATGTTTTCAAAA
7132354 ATGTGTTT
66 ATGTGTTT
* * *
7132362 TCAAAACTATATAATATATGTTTTC-AAAAATGTGTTTTCAAAATAATATAATATATGTTTT--T
1 TCAAAACTATATAATATATGTTTTCAAAAAATGT-TTTT-AAAATTATATATTATATGTTTTCAA
*
7132424 AAATCGTATTT
64 AAAT-GTGTTT
* * *** *
7132435 TCAAAACCATAT--TATATATTTTCAAAATCGGTTTTTAAAATTATATATTATATGCTTT-AAAA
1 TCAAAACTATATAATATATGTTTTCAAAAAATGTTTTTAAAATTATATATTATATGTTTTCAAAA
7132497 A
66 A
7132498 CGTTTAAATT
Statistics
Matches: 184, Mismatches: 19, Indels: 17
0.84 0.09 0.08
Matches are distributed among these distances:
70 19 0.10
71 17 0.09
72 33 0.18
73 52 0.28
74 43 0.23
75 1 0.01
76 19 0.10
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (73 bp):
TCAAAACTATATAATATATGTTTTCAAAAAATGTTTTTAAAATTATATATTATATGTTTTCAAAA
ATGTGTTT
Found at i:7133303 original size:205 final size:201
Alignment explanation
Indices: 7132951--7133367 Score: 593
Period size: 205 Copynumber: 2.1 Consensus size: 201
7132941 GTTAACCTTA
* * *
7132951 GTCTTCTTCTCGGCTTAAAGACCTCGGTTTAAAATTCAACCGAACAGTAGATCCTCGCTGCTACC
1 GTCTTCTTCTTGACTTAAAGACCTCGGTTTAAAATTCAACCGAAAAGTAGATCCTCGCTGCTACC
** * * * *
7133016 ATGTGGTCGACATGCCTTCGAGCTTAATGGAATCGAACTCAAACGTTTTCATTGACATACAACTT
66 ATACGGTCGACACGCCTTCGAGCTGAATGGAATCGAACTCAAACGTTTTCATTAACAGACAACTT
* * * *
7133081 TTCTCGACTTAAGCTATGTTGTAAATTAAGCAGGGAGCTATATAGTTCCTTGTTGCTAAATCGCA
131 TTCTCGACTTAAGCTATGATGTAAATT-AG-ACGGAG--AGATAGTTCCTTGTTGCTAAATCACA
* *
7133146 GCCAACCTAT
192 GCCAACATAG
* *
7133156 GTCTTCTTCTTGACTTAAAGACCTCGGTTTAAAATTCAACCGAAAAGTAGGTCCTCGTTGCTACC
1 GTCTTCTTCTTGACTTAAAGACCTCGGTTTAAAATTCAACCGAAAAGTAGATCCTCGCTGCTACC
* *
7133221 ATACGGTTGATACGCCTTCGAGCTGAATGGAATCGAACTCGAAA-GTTTTCATTAACAGACAACT
66 ATACGGTCGACACGCCTTCGAGCTGAATGGAATCGAACTC-AAACGTTTTCATTAACAGACAACT
* *
7133285 TTTCTTGACTTAAGCTATGATGTAAATTAGACTGAGAGATAGTTCCTTGTTGCTAAATCACAGCC
130 TTTCTCGACTTAAGCTATGATGTAAATTAGACGGAGAGATAGTTCCTTGTTGCTAAATCACAGCC
7133350 AACATAG
195 AACATAG
7133357 GTCTTCTTCTT
1 GTCTTCTTCTT
7133368 ACTGTTACCA
Statistics
Matches: 190, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
201 43 0.23
203 4 0.02
204 2 0.01
205 138 0.73
206 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (201 bp):
GTCTTCTTCTTGACTTAAAGACCTCGGTTTAAAATTCAACCGAAAAGTAGATCCTCGCTGCTACC
ATACGGTCGACACGCCTTCGAGCTGAATGGAATCGAACTCAAACGTTTTCATTAACAGACAACTT
TTCTCGACTTAAGCTATGATGTAAATTAGACGGAGAGATAGTTCCTTGTTGCTAAATCACAGCCA
ACATAG
Found at i:7133501 original size:156 final size:156
Alignment explanation
Indices: 7133217--7133523 Score: 506
Period size: 156 Copynumber: 2.0 Consensus size: 156
7133207 TCCTCGTTGC
* * *
7133217 TACCATACGGTTGATACGCCTTCGAGCTGAATGGAATCGAACTCGAAAGTTTTCATTAACAGACA
1 TACCATACAGTTGATACGCCTTCGAGCTGAATAGAATCGAACTCAAAAGTTTTCATTAACAGACA
*
7133282 ACTTTTCTTGACTTAAGCTATGATGTAAATTAGACTGAGAGATAGTTCCTTGTTGCTAAATCACA
66 ACTTTTCTCGACTTAAGCTATGATGTAAATTAGACTGAGAGATAGTTCCTTGTTGCTAAATCACA
7133347 GCCAACATAGGTCTTCTTCTTACTGT
131 GCCAACATAGGTCTTCTTCTTACTGT
* *
7133373 TACCATGCAGTTGATACGCCTTCGAGCTGAATAGAATCGAACTCAAAAGTTTTCATTGACAGACA
1 TACCATACAGTTGATACGCCTTCGAGCTGAATAGAATCGAACTCAAAAGTTTTCATTAACAGACA
* ** * *
7133438 ACTTTTCTCGACTTAAGCTATGCTGTAAATTAGGTTGGGAGATAGTTCTTTGTTGCTAAATCACA
66 ACTTTTCTCGACTTAAGCTATGATGTAAATTAGACTGAGAGATAGTTCCTTGTTGCTAAATCACA
*
7133503 GCCAACCTAGGTCTTCTTCTT
131 GCCAACATAGGTCTTCTTCTT
7133524 GACTTAAAGA
Statistics
Matches: 139, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
156 139 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (156 bp):
TACCATACAGTTGATACGCCTTCGAGCTGAATAGAATCGAACTCAAAAGTTTTCATTAACAGACA
ACTTTTCTCGACTTAAGCTATGATGTAAATTAGACTGAGAGATAGTTCCTTGTTGCTAAATCACA
GCCAACATAGGTCTTCTTCTTACTGT
Found at i:7140716 original size:6 final size:6
Alignment explanation
Indices: 7140707--7140734 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7140697 TCAAATTTAA
7140707 AATTAC AATTAC AATTAC AATTAC AATT
1 AATTAC AATTAC AATTAC AATTAC AATT
7140735 TTCTCTTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (6 bp):
AATTAC
Found at i:7142557 original size:3 final size:3
Alignment explanation
Indices: 7142537--7142608 Score: 51
Period size: 3 Copynumber: 23.3 Consensus size: 3
7142527 AAAAAAACCG
* * *
7142537 AAT AAA AAT AATT AAT AAT AAA AAT -AT AAT AAT AAAT AAA AAT AAT
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
7142583 -AT AAT ATAT AAT GAA- AACT AAT AAT A
1 AAT AAT A-AT AAT -AAT AA-T AAT AAT A
7142609 TGTTTTAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
2 6 0.11
3 36 0.65
4 13 0.24
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:7142568 original size:21 final size:21
Alignment explanation
Indices: 7142543--7142593 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
7142533 ACCGAATAAA
*
7142543 AATAATTAATAATAAA-AATAT
1 AATAATAAATAA-AAATAATAT
7142564 AATAATAAATAAAAATAATAT
1 AATAATAAATAAAAATAATAT
7142585 AATATATAA
1 AATA-ATAA
7142594 TGAAAACTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 3 0.11
21 20 0.74
22 4 0.15
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
AATAATAAATAAAAATAATAT
Found at i:7142574 original size:18 final size:17
Alignment explanation
Indices: 7142537--7142593 Score: 71
Period size: 18 Copynumber: 3.3 Consensus size: 17
7142527 AAAAAAACCG
*
7142537 AATAAAAATAATTAAT-
1 AATAAAAATAAATAATA
7142553 AATAAAAATATAATAATA
1 AATAAAAATA-AATAATA
7142571 AATAAAAATAATATAATA
1 AATAAAAATAA-ATAATA
*
7142589 TATAA
1 AATAA
7142594 TGAAAACTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
16 10 0.28
17 6 0.17
18 20 0.56
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AATAAAAATAAATAATA
Found at i:7142700 original size:38 final size:37
Alignment explanation
Indices: 7142617--7142903 Score: 282
Period size: 38 Copynumber: 7.6 Consensus size: 37
7142607 TATGTTTTAA
* ** *
7142617 AAAATTATATATTATATATGTTTCCCAAAAAAATCATTTTT
1 AAAACTATATATTATATATGTTT--C--AAAAATTGTTTTC
*
7142658 AAAACTATATATTATATATGCTTTCAAAAATTATTTTC
1 AAAACTATATATTATATATG-TTTCAAAAATTGTTTTC
* *
7142696 AAAACTATATAATATATATGCTTTCAAATATTGTTTTC
1 AAAACTATATATTATATATG-TTTCAAAAATTGTTTTC
* * * *
7142734 GAAACTATATAATATATGTGTTTTCAAAATTTGTTTTC
1 AAAACTATATATTATATATG-TTTCAAAAATTGTTTTC
* *
7142772 AAAACTATATA--ATATATGTTTTCAAAAACTGTTTTT
1 AAAACTATATATTATATATG-TTTCAAAAATTGTTTTC
*
7142808 AAAACTATATATTATACAT-TTTCAAAAATGTGTTTTC
1 AAAACTATATATTATATATGTTTCAAAAAT-TGTTTTC
* *
7142845 AAAACTATATA--ATATACGTTTTCAAAAATATGTTTTT
1 AAAACTATATATTATATATG-TTTCAAAAAT-TGTTTTC
7142882 AAAACTATATA--ATATATGTTTC
1 AAAACTATATATTATATATGTTTC
7142904 TAAATCGTAT
Statistics
Matches: 216, Mismatches: 24, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
35 4 0.02
36 45 0.21
37 50 0.23
38 94 0.44
40 1 0.00
41 19 0.09
42 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.44
Consensus pattern (37 bp):
AAAACTATATATTATATATGTTTCAAAAATTGTTTTC
Found at i:7142712 original size:36 final size:36
Alignment explanation
Indices: 7142653--7142902 Score: 302
Period size: 38 Copynumber: 6.7 Consensus size: 36
7142643 AAAAAAATCA
* * *
7142653 TTTTTAAAACTATATATTATATATGCTTTCAAAAATTA
1 TTTTCAAAACTATATA--ATATATGTTTTCAAAAATTG
* *
7142691 TTTTCAAAACTATATAATATATATGCTTTCAAATATTG
1 TTTTCAAAACTATAT-A-ATATATGTTTTCAAAAATTG
* *
7142729 TTTTCGAAACTATATAATATATGTGTTTTCAAAATTTG
1 TTTTCAAAACTATATAATATA--TGTTTTCAAAAATTG
*
7142767 TTTTCAAAACTATATAATATATGTTTTCAAAAACTG
1 TTTTCAAAACTATATAATATATGTTTTCAAAAATTG
* * **
7142803 TTTTTAAAACTATATATTATACATTTTCAAAAATGTG
1 TTTTCAAAACTATATAATATATGTTTTCAAAAAT-TG
*
7142840 TTTTCAAAACTATATAATATACGTTTTCAAAAATATG
1 TTTTCAAAACTATATAATATATGTTTTCAAAAAT-TG
*
7142877 TTTTTAAAACTATATAATATATGTTT
1 TTTTCAAAACTATATAATATATGTTT
7142903 CTAAATCGTA
Statistics
Matches: 187, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
36 47 0.25
37 60 0.32
38 79 0.42
39 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.46
Consensus pattern (36 bp):
TTTTCAAAACTATATAATATATGTTTTCAAAAATTG
Found at i:7142933 original size:36 final size:36
Alignment explanation
Indices: 7142665--7142938 Score: 243
Period size: 36 Copynumber: 7.5 Consensus size: 36
7142655 TTTAAAACTA
* *
7142665 TATATTATATATGCTTTCAAAAAT-TATTTTCAAAAC
1 TATATTATATATGTTTTC-AAAATGTGTTTTCAAAAC
* *
7142701 TATATAATATATATGCTTTCAAATAT-TGTTTTCGAAAC
1 TATAT--TATATATGTTTTCAAA-ATGTGTTTTCAAAAC
* *
7142739 TATATAATATATGTGTTTTCAAAATTTGTTTTCAAAAC
1 TATAT--TATATATGTTTTCAAAATGTGTTTTCAAAAC
* ** *
7142777 TATATAATATATGTTTTCAAAAACTGTTTTTAAAAC
1 TATATTATATATGTTTTCAAAATGTGTTTTCAAAAC
**
7142813 TATA-TATTATACATTTTCAAAAATGTGTTTTCAAAAC
1 TATATTA-TATATGTTTTC-AAAATGTGTTTTCAAAAC
* * * *
7142850 TATATAATATACGTTTTCAAAAATATGTTTTTAAAAC
1 TATATTATATATGTTTTC-AAAATGTGTTTTCAAAAC
* * *
7142887 TATATAATATATG-TTTCTAAATCGTATTTTCAAAAC
1 TATATTATATATGTTTTCAAAAT-GTGTTTTCAAAAC
*
7142923 CATATTATATAT-TTTT
1 TATATTATATATGTTTT
7142939 AAACCAATTT
Statistics
Matches: 202, Mismatches: 27, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
35 5 0.02
36 71 0.35
37 63 0.31
38 63 0.31
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.46
Consensus pattern (36 bp):
TATATTATATATGTTTTCAAAATGTGTTTTCAAAAC
Found at i:7142988 original size:24 final size:25
Alignment explanation
Indices: 7142956--7143002 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
7142946 TTTTTAAAAT
*
7142956 TTTATATTATATGCTTT-AAAAACG
1 TTTAAATTATATGCTTTCAAAAACG
*
7142980 TTTAAATTATATGTTTTCAAAAA
1 TTTAAATTATATGCTTTCAAAAA
7143003 ATATTTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.47
Consensus pattern (25 bp):
TTTAAATTATATGCTTTCAAAAACG
Found at i:7152555 original size:200 final size:200
Alignment explanation
Indices: 7152014--7152848 Score: 1129
Period size: 200 Copynumber: 4.2 Consensus size: 200
7152004 GCCGGCCCTG
* *
7152014 CTTACATTGTAAATTTACCT-TGTATTTTAAAGTAATCGGTTTCGATGTT-TAAGAATCGATACT
1 CTTACATTGTAAATTTACCTAT-TACTTTAAAGTAATCGGTTTCGAAGTTGTAAGAATCGATACT
* * *
7152077 TTTTATACGTGTATTGATACTTTCTGCGTGCATCTCATTTGGGAAGCATACTGGACCAAAAGTAT
65 TTTGATACGTGTATCGATACTTTCTGCGTGCATCTCGTTTGGGAAGCATACTGGACCAAAAGTAT
* * * * * *
7152142 CGATACATATTCAAGAAGTATCGAAACTTTATGTTTACATATTTTATCATTAAACCGATATATTT
130 CGATACATATACAAAAAGTATCGAAACTTTATGTTTACACATTTTGTCATTAAACTGGTATATTT
*
7152207 TTACCA
195 TTACCT
* * **
7152213 CTTACATTGCAAATTTACCTATTACTTTAAAAGTAATCGGTTTCAAAGTTGTAAGAATATATACT
1 CTTACATTGTAAATTTACCTATTACTTT-AAAGTAATCGGTTTCGAAGTTGTAAGAATCGATACT
* * * *
7152278 TTTGATACGTGTATCAATACTTTCTGCATACATCTCGTTTGGGAAGCATATTGGACCAAAAGTAT
65 TTTGATACGTGTATCGATACTTTCTGCGTGCATCTCGTTTGGGAAGCATACTGGACCAAAAGTAT
** **
7152343 TTATACATATACAAAAAGTATCGAAACTTTATGTTTATGCATTTTGTCATTAAACTGGTATATTT
130 CGATACATATACAAAAAGTATCGAAACTTTATGTTTACACATTTTGTCATTAAACTGGTATATTT
*
7152408 TTACTT
195 TTACCT
* * *
7152414 CTTACGTTGTAAATTTACCTATTACTTTAAAGTAATTGGTTTTGAAGTTGTAAGAATCGATACTT
1 CTTACATTGTAAATTTACCTATTACTTTAAAGTAATCGGTTTCGAAGTTGTAAGAATCGATACTT
* * * * ** *
7152479 TTGATATGTGTATCGATACTTTATGGGCGCATCTCGTTTGGGAAGCATTTTGGACCAAAAATATC
66 TTGATACGTGTATCGATACTTTCTGCGTGCATCTCGTTTGGGAAGCATACTGGACCAAAAGTATC
* * * * *
7152544 GATATATATACAAAAAGTATCAAAACTTTAAGTTTATACATTTTGTCATTAAATTGGTATATTTT
131 GATACATATACAAAAAGTATCGAAACTTTATGTTTACACATTTTGTCATTAAACTGGTATATTTT
7152609 TACCT
196 TACCT
** * *
7152614 CTTACATTGTAAATTTAGATATTACTTTAAAGTAATC-GTTTGGAAGTTGTAAGAATCGATACAT
1 CTTACATTGTAAATTTACCTATTACTTTAAAGTAATCGGTTTCGAAGTTGTAAGAATCGATACTT
* * ** * * * *
7152678 TTGATATGTGTATCGATACTTTCTGGGTTTATCTTGTTTGGGAAACATACTAGAGCAAAAGTATC
66 TTGATACGTGTATCGATACTTTCTGCGTGCATCTCGTTTGGGAAGCATACTGGACCAAAAGTATC
* *
7152743 GATACATATACAAAACGTATTGAAACTTTATGTTTACACATTTTGTCATTAAA-TCGGTATATTT
131 GATACATATACAAAAAGTATCGAAACTTTATGTTTACACATTTTGTCATTAAACT-GGTATATTT
7152807 TTACCT
195 TTACCT
7152813 CTTACATTGTAAATTTACCTATTACTTTAAAGTAAT
1 CTTACATTGTAAATTTACCTATTACTTTAAAGTAAT
7152849 AAATGTTGAA
Statistics
Matches: 558, Mismatches: 74, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
198 1 0.00
199 199 0.36
200 203 0.36
201 155 0.28
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.40
Consensus pattern (200 bp):
CTTACATTGTAAATTTACCTATTACTTTAAAGTAATCGGTTTCGAAGTTGTAAGAATCGATACTT
TTGATACGTGTATCGATACTTTCTGCGTGCATCTCGTTTGGGAAGCATACTGGACCAAAAGTATC
GATACATATACAAAAAGTATCGAAACTTTATGTTTACACATTTTGTCATTAAACTGGTATATTTT
TACCT
Found at i:7156502 original size:19 final size:20
Alignment explanation
Indices: 7156478--7156516 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
7156468 GAACGCTAGA
7156478 AACCGGTTTTG-ACCGGTTT
1 AACCGGTTTTGAACCGGTTT
7156497 AACCGGTTTTGAACCGGTTT
1 AACCGGTTTTGAACCGGTTT
7156517 TGACTGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.36
Consensus pattern (20 bp):
AACCGGTTTTGAACCGGTTT
Found at i:7156513 original size:11 final size:11
Alignment explanation
Indices: 7156478--7156519 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
7156468 GAACGCTAGA
7156478 AACCGGTTTTG
1 AACCGGTTTTG
7156489 -ACCGG-TTT-
1 AACCGGTTTTG
7156497 AACCGGTTTTG
1 AACCGGTTTTG
7156508 AACCGGTTTTG
1 AACCGGTTTTG
7156519 A
1 A
7156520 CTGGTTTGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.29
10 8 0.29
11 12 0.43
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (11 bp):
AACCGGTTTTG
Found at i:7156558 original size:13 final size:13
Alignment explanation
Indices: 7156537--7156587 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
7156527 GACCGGTCAC
7156537 GACCCGACCCGTT
1 GACCCGACCCGTT
*
7156550 GACCGGACCC---
1 GACCCGACCCGTT
7156560 GACCCGA-CCGTT
1 GACCCGACCCGTT
7156572 GACCCGACCCGTT
1 GACCCGACCCGTT
7156585 GAC
1 GAC
7156588 TGGTGCTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
9 2 0.06
10 6 0.19
12 7 0.22
13 17 0.53
ACGTcount: A:0.18, C:0.45, G:0.25, T:0.12
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:7156573 original size:22 final size:23
Alignment explanation
Indices: 7156525--7156582 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
7156515 TTTGACTGGT
* *
7156525 TTGACCGGTCACGACCCGACCCG
1 TTGACCGGACCCGACCCGACCCG
7156548 TTGACCGGACCCGACCCGA-CCG
1 TTGACCGGACCCGACCCGACCCG
*
7156570 TTGACCCGACCCG
1 TTGACCGGACCCG
7156583 TTGACTGGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 15 0.47
23 17 0.53
ACGTcount: A:0.17, C:0.45, G:0.26, T:0.12
Consensus pattern (23 bp):
TTGACCGGACCCGACCCGACCCG
Found at i:7163524 original size:9 final size:9
Alignment explanation
Indices: 7163506--7163543 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
7163496 GGAAACCAGT
7163506 TTTGACCGG
1 TTTGACCGG
*
7163515 TTTAACCGG
1 TTTGACCGG
7163524 TTTTGACCGG
1 -TTTGACCGG
7163534 TTTGACCGG
1 TTTGACCGG
7163543 T
1 T
7163544 CACAACCCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.13, C:0.21, G:0.29, T:0.37
Consensus pattern (9 bp):
TTTGACCGG
Found at i:7163526 original size:19 final size:19
Alignment explanation
Indices: 7163499--7163543 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
7163489 GAACGCCGGA
*
7163499 AACCAGTTTTGACCGGTTT
1 AACCGGTTTTGACCGGTTT
7163518 AACCGGTTTTGACCGGTTT
1 AACCGGTTTTGACCGGTTT
*
7163537 GACCGGT
1 AACCGGT
7163544 CACAACCCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.18, C:0.22, G:0.27, T:0.33
Consensus pattern (19 bp):
AACCGGTTTTGACCGGTTT
Found at i:7163577 original size:17 final size:18
Alignment explanation
Indices: 7163548--7163622 Score: 136
Period size: 17 Copynumber: 4.3 Consensus size: 18
7163538 ACCGGTCACA
7163548 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
7163566 ACCCGA-CCGTTGACCCG
1 ACCCGACCCGTTGACCCG
7163583 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
7163601 ACCCGA-CCGTTGACCCG
1 ACCCGACCCGTTGACCCG
7163618 ACCCG
1 ACCCG
7163623 TTGACTGGTG
Statistics
Matches: 56, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
17 33 0.59
18 23 0.41
ACGTcount: A:0.17, C:0.49, G:0.23, T:0.11
Consensus pattern (18 bp):
ACCCGACCCGTTGACCCG
Found at i:7163588 original size:35 final size:35
Alignment explanation
Indices: 7163548--7163622 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
7163538 ACCGGTCACA
7163548 ACCCGACCCGTTGACCCGACCCGACCGTTGACCCG
1 ACCCGACCCGTTGACCCGACCCGACCGTTGACCCG
7163583 ACCCGACCCGTTGACCCGACCCGACCGTTGACCCG
1 ACCCGACCCGTTGACCCGACCCGACCGTTGACCCG
7163618 ACCCG
1 ACCCG
7163623 TTGACTGGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.17, C:0.49, G:0.23, T:0.11
Consensus pattern (35 bp):
ACCCGACCCGTTGACCCGACCCGACCGTTGACCCG
Found at i:7163617 original size:12 final size:13
Alignment explanation
Indices: 7163582--7163627 Score: 56
Period size: 13 Copynumber: 3.2 Consensus size: 13
7163572 CCGTTGACCC
7163582 GACCCGACCCGTT
1 GACCCGACCCGTT
7163595 GACCCGACCCGACCGTT
1 GACCCGA--C--CCGTT
7163612 GACCCGACCCGTT
1 GACCCGACCCGTT
7163625 GAC
1 GAC
7163628 TGGTGCTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 15 0.52
15 2 0.07
17 12 0.41
ACGTcount: A:0.17, C:0.46, G:0.24, T:0.13
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:7163756 original size:10 final size:10
Alignment explanation
Indices: 7163741--7163770 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
7163731 GACCAGAACG
7163741 TTGACCGGCT
1 TTGACCGGCT
7163751 TTGACCGGCT
1 TTGACCGGCT
7163761 TTGACCGGCT
1 TTGACCGGCT
7163771 ATTAAACGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.30, G:0.30, T:0.30
Consensus pattern (10 bp):
TTGACCGGCT
Found at i:7168593 original size:223 final size:223
Alignment explanation
Indices: 7168205--7168614 Score: 644
Period size: 223 Copynumber: 1.8 Consensus size: 223
7168195 ATAGTAAAGT
* * *
7168205 GGTTTCCTTCAAAGGAATGAGAATACTCTCTACTACAAGTATTGATACATTTATATAACCTACAA
1 GGTTTCCTTCAAAAGAATGAGAATACTCTCTACTACAAGTATCGATACATTTATACAACCTACAA
*
7168270 TATCATTTTCTACCTATAAAAATATATAAAAGTATTGATATTTATTTTATACCTAGAATATCACT
66 TATCATTTTCTACCTATAAAAATATATAAAAGTATCGATATTTATTTTATACCTAGAATATCACT
* ** *
7168335 TTCTAACTCTAATCGGTCCCAAATCCTCCTTTACTTTGAAAACCCTAAACCCATAAACCATATTT
131 TTCTAACTATAATCGGTCCCAAATCCTCCTTTACTTCAAAAACCCCAAACCCATAAACCATATTT
7168400 CCAAATATTGTAAAATTAAAAAAATTAG
196 CCAAATATTGTAAAATTAAAAAAATTAG
*
7168428 GGTTTCCTTCAAAAGAATTG-GAATACTCTCTACTACAAGTATCGGTACATTTATACAACCTACA
1 GGTTTCCTTCAAAAGAA-TGAGAATACTCTCTACTACAAGTATCGATACATTTATACAACCTACA
* * *
7168492 ATATCATTTTCTACCTATAATATTATATAAAAGTATCGATATTTATTTTCTACCTAGAATATCAC
65 ATATCATTTTCTACCTATAAAAATATATAAAAGTATCGATATTTATTTTATACCTAGAATATCAC
* * * *
7168557 TTTCT-ACATATAATCGGTCTCGAATGCTTCTTTACTTCAAAAACCCCAAACCCATAAA
130 TTTCTAAC-TATAATCGGTCCCAAATCCTCCTTTACTTCAAAAACCCCAAACCCATAAA
7168615 ACCCCTATTT
Statistics
Matches: 169, Mismatches: 16, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
222 2 0.01
223 165 0.98
224 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (223 bp):
GGTTTCCTTCAAAAGAATGAGAATACTCTCTACTACAAGTATCGATACATTTATACAACCTACAA
TATCATTTTCTACCTATAAAAATATATAAAAGTATCGATATTTATTTTATACCTAGAATATCACT
TTCTAACTATAATCGGTCCCAAATCCTCCTTTACTTCAAAAACCCCAAACCCATAAACCATATTT
CCAAATATTGTAAAATTAAAAAAATTAG
Found at i:7174368 original size:123 final size:124
Alignment explanation
Indices: 7174149--7174395 Score: 487
Period size: 123 Copynumber: 2.0 Consensus size: 124
7174139 GGGAATTCAA
7174149 ACCCATGACCCGAATACCAAGTTAAAATAGGTCTGTCACTTATCCCAGGATTTGGGTATGCATTC
1 ACCCATGACCCGAATACCAAGTTAAAATAGGTCTGTCACTTATCCCAGGATTTGGGTATGCATTC
7174214 TTTGATACCTCAGAATCGCTTCCACTTTTCGTAGACGATCTTGA-TTCGGGTACAACCT
66 TTTGATACCTCAGAATCGCTTCCACTTTTCGTAGACGATCTTGATTTCGGGTACAACCT
7174272 ACCCATGACCCGAATACCAAGTTAAAATAGGTCTGTCACTTATCCCAGGATTTGGGTATGCATTC
1 ACCCATGACCCGAATACCAAGTTAAAATAGGTCTGTCACTTATCCCAGGATTTGGGTATGCATTC
7174337 TTTGATACCTCAGAATCGCTTCCACTTTTCGTAGACGATCTTGATTTCGGGTACAACCT
66 TTTGATACCTCAGAATCGCTTCCACTTTTCGTAGACGATCTTGATTTCGGGTACAACCT
7174396 GTGTGAACAA
Statistics
Matches: 123, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
123 109 0.89
124 14 0.11
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (124 bp):
ACCCATGACCCGAATACCAAGTTAAAATAGGTCTGTCACTTATCCCAGGATTTGGGTATGCATTC
TTTGATACCTCAGAATCGCTTCCACTTTTCGTAGACGATCTTGATTTCGGGTACAACCT
Found at i:7178192 original size:13 final size:13
Alignment explanation
Indices: 7178174--7178199 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7178164 TTTCACATTC
7178174 TTCCTTCTATCAA
1 TTCCTTCTATCAA
7178187 TTCCTTCTATCAA
1 TTCCTTCTATCAA
7178200 GTTAAGTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (13 bp):
TTCCTTCTATCAA
Found at i:7178855 original size:28 final size:28
Alignment explanation
Indices: 7178815--7178871 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
7178805 AGTATTTAAG
7178815 GTATATGAATTTGAGTAAAACAATTACA
1 GTATATGAATTTGAGTAAAACAATTACA
7178843 GTATATGAATTTGAGTAAAACAATTACA
1 GTATATGAATTTGAGTAAAACAATTACA
7178871 G
1 G
7178872 ACTAAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.46, C:0.07, G:0.16, T:0.32
Consensus pattern (28 bp):
GTATATGAATTTGAGTAAAACAATTACA
Found at i:7183746 original size:20 final size:20
Alignment explanation
Indices: 7183723--7183767 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
7183713 TTTTTTGAAA
*
7183723 TTTTGGCTTTTTTTGTT-TTT
1 TTTTGCCTTTTTTT-TTGTTT
7183743 TTTTGCCTTTTTTTTTGTTT
1 TTTTGCCTTTTTTTTTGTTT
7183763 TTTTG
1 TTTTG
7183768 TTTTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.00, C:0.07, G:0.13, T:0.80
Consensus pattern (20 bp):
TTTTGCCTTTTTTTTTGTTT
Found at i:7183763 original size:10 final size:10
Alignment explanation
Indices: 7183730--7183774 Score: 58
Period size: 10 Copynumber: 4.5 Consensus size: 10
7183720 AAATTTTGGC
7183730 TTTTTTTGTT
1 TTTTTTTGTT
7183740 TTTTTTTGCCTT
1 TTTTTTTG--TT
7183752 TTTTTTTG--
1 TTTTTTTGTT
7183760 TTTTTTTGTT
1 TTTTTTTGTT
7183770 TTTTT
1 TTTTT
7183775 AAAAAAATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
8 8 0.26
10 13 0.42
12 10 0.32
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:7187252 original size:15 final size:15
Alignment explanation
Indices: 7187231--7187275 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
7187221 TGATATATAT
7187231 ATGTTCTATGTGAAA
1 ATGTTCTATGTGAAA
* *
7187246 CTGTTCTACGTGAAA
1 ATGTTCTATGTGAAA
*
7187261 ATATTCTATGTGAAA
1 ATGTTCTATGTGAAA
7187276 TGAAATATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (15 bp):
ATGTTCTATGTGAAA
Found at i:7187472 original size:24 final size:24
Alignment explanation
Indices: 7187411--7187514 Score: 117
Period size: 23 Copynumber: 4.4 Consensus size: 24
7187401 GAGTCGAGGG
*
7187411 TTCTACGCGGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
* *
7187435 -ACTATGTGGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
7187458 TTCTACGTGGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
* *
7187482 -TCTATGTGG-CACTTCGGTG-CATA
1 TTCTACGTGGTC-CTTCGG-GACAAA
7187505 TTCTACGTGG
1 TTCTACGTGG
7187515 CTCTTCGATG
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
22 1 0.01
23 37 0.54
24 30 0.44
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.30
Consensus pattern (24 bp):
TTCTACGTGGTCCTTCGGGACAAA
Found at i:7187515 original size:24 final size:22
Alignment explanation
Indices: 7187456--7187527 Score: 65
Period size: 24 Copynumber: 3.1 Consensus size: 22
7187446 CTTCGGGACA
7187456 AATTCTACGTGGTCCTTCGG-GAC
1 AATTCTACGTGG-CCTTCGGTG-C
* *
7187479 AAATCTATGTGGCACTTCGGTGC
1 AATTCTACGTGGC-CTTCGGTGC
*
7187502 ATATTCTACGTGGCTCTTCGATGC
1 A-ATTCTACGTGGC-CTTCGGTGC
7187526 AA
1 AA
7187528 ATTATATGAG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
22 1 0.03
23 19 0.47
24 20 0.50
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.32
Consensus pattern (22 bp):
AATTCTACGTGGCCTTCGGTGC
Found at i:7187529 original size:47 final size:47
Alignment explanation
Indices: 7187411--7187514 Score: 149
Period size: 47 Copynumber: 2.2 Consensus size: 47
7187401 GAGTCGAGGG
* *
7187411 TTCTACGCGGTCCTTCGGGACAAAACTATGTGGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAATCTATGTGGTCCTTCGGGACAAA
*
7187458 TTCTACGTGGTCCTTCGGGACAAATCTATGTGG-CACTTCGGTG-CATA
1 TTCTACGTGGTCCTTCGGGACAAATCTATGTGGTC-CTTCGG-GACAAA
7187505 TTCTACGTGG
1 TTCTACGTGG
7187515 CTCTTCGATG
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
46 1 0.02
47 50 0.96
48 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.30
Consensus pattern (47 bp):
TTCTACGTGGTCCTTCGGGACAAATCTATGTGGTCCTTCGGGACAAA
Found at i:7190489 original size:2 final size:2
Alignment explanation
Indices: 7190482--7190509 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7190472 AGAGATAAGG
7190482 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7190510 CAAGGAAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7191517 original size:16 final size:16
Alignment explanation
Indices: 7191496--7191529 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7191486 AGCTCAGTCC
7191496 TAGATTCATTGAACCT
1 TAGATTCATTGAACCT
7191512 TAGATTCATTGAACCT
1 TAGATTCATTGAACCT
7191528 TA
1 TA
7191530 TAAGATCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (16 bp):
TAGATTCATTGAACCT
Found at i:7192676 original size:154 final size:155
Alignment explanation
Indices: 7192394--7192703 Score: 604
Period size: 154 Copynumber: 2.0 Consensus size: 155
7192384 GTTAGAAGTG
7192394 TTAGGAAGGATTAAAAACATGTTTGAAGATTGGGTAAGCCTTTTAGATTCAAGTGTTCTATGGAT
1 TTAGGAAGGATTAAAAACATGTTTGAAGATTGGGTAAGCCTTTTAGATTCAAGTGTTC-ATGGAT
7192459 AATTTTAGATGATAAAGGGAATTTAAGTGTTATAAGTTGGTTGTGATAAGTGATATTGAGTTTAC
65 AATTTTAGATGATAAAGGGAATTTAAGTGTTATAAGTTGGTTGTGATAAGTGATATTGAGTTTAC
7192524 GAATTTAAATGGGGTTAAAAGTATGA
130 GAATTTAAATGGGGTTAAAAGTATGA
7192550 TTAGGAAGGATTAAAAACATGTTTGAAGATTGGGTAAGCCTTTTAGATTCAAGTGTTC-TGGATA
1 TTAGGAAGGATTAAAAACATGTTTGAAGATTGGGTAAGCCTTTTAGATTCAAGTGTTCATGGATA
7192614 ATTTTAGATGATAAAGGGAATTTAAGTGTTATAAGTTGGTTGTGATAAGTGATATTGAGTTTACG
66 ATTTTAGATGATAAAGGGAATTTAAGTGTTATAAGTTGGTTGTGATAAGTGATATTGAGTTTACG
7192679 AATTTAAATGGGGTTAAAAGTATGA
131 AATTTAAATGGGGTTAAAAGTATGA
7192704 AATTTAGGTG
Statistics
Matches: 154, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
154 96 0.62
156 58 0.38
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (155 bp):
TTAGGAAGGATTAAAAACATGTTTGAAGATTGGGTAAGCCTTTTAGATTCAAGTGTTCATGGATA
ATTTTAGATGATAAAGGGAATTTAAGTGTTATAAGTTGGTTGTGATAAGTGATATTGAGTTTACG
AATTTAAATGGGGTTAAAAGTATGA
Found at i:7192858 original size:21 final size:20
Alignment explanation
Indices: 7192833--7192884 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
7192823 TGATGAACAT
7192833 TATCGATACTGAT-TGGAGTAG
1 TATCGATACTGATGTGGAG--G
*
7192854 TATCGATACTAATGTGGAGG
1 TATCGATACTGATGTGGAGG
7192874 TATCGATACTG
1 TATCGATACTG
7192885 TAATTGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 11 0.39
21 12 0.43
22 5 0.18
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (20 bp):
TATCGATACTGATGTGGAGG
Found at i:7193690 original size:15 final size:15
Alignment explanation
Indices: 7193666--7193706 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7193656 TTTTTTAAAT
*
7193666 ATGTTTTATGTGAAA
1 ATGTTCTATGTGAAA
*
7193681 CTGTTCTATGTGAAA
1 ATGTTCTATGTGAAA
*
7193696 ATATTCTATGT
1 ATGTTCTATGT
7193707 TAAATGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.46
Consensus pattern (15 bp):
ATGTTCTATGTGAAA
Found at i:7196617 original size:22 final size:19
Alignment explanation
Indices: 7196592--7196633 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
7196582 CAAAATATCA
7196592 AATTAATATATATTATATTTTT
1 AATTAATA-ATATT-T-TTTTT
7196614 AATTAATAATATTTTTTTT
1 AATTAATAATATTTTTTTT
7196633 A
1 A
7196634 TTTTTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 1 0.05
21 5 0.25
22 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AATTAATAATATTTTTTTT
Found at i:7196842 original size:6 final size:6
Alignment explanation
Indices: 7196831--7196868 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
7196821 TTTATATATT
*
7196831 TTTTAA TTTTAA TTTTAA TTTT-A TTTT-A TATTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
7196869 TTATTTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 9 0.31
6 20 0.69
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:7196848 original size:12 final size:12
Alignment explanation
Indices: 7196831--7196868 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
7196821 TTTATATATT
7196831 TTTTAATTTTAA
1 TTTTAATTTTAA
7196843 TTTTAATTTT-A
1 TTTTAATTTTAA
*
7196854 TTTT-ATATTAA
1 TTTTAATTTTAA
7196865 TTTT
1 TTTT
7196869 TTATTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTAATTTTAA
Found at i:7196877 original size:17 final size:16
Alignment explanation
Indices: 7196816--7196868 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
7196806 CGATACCTGG
*
7196816 TTTATTTTATA-TATTT
1 TTTATTTTATATTA-AT
*
7196832 TTTAATTTTAATTTTAAT
1 TTT-ATTTT-ATATTAAT
7196850 TTTATTTTATATTAAT
1 TTTATTTTATATTAAT
7196866 TTT
1 TTT
7196869 TTATTTATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 13 0.42
17 10 0.32
18 6 0.19
19 2 0.06
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTTATATTAAT
Found at i:7196950 original size:37 final size:39
Alignment explanation
Indices: 7196900--7196988 Score: 110
Period size: 37 Copynumber: 2.3 Consensus size: 39
7196890 AGTTGACTCA
* *
7196900 AACATTCTAAATTCCTAACTTCTTACATT-TTAC-CATT
1 AACATTCTAAATTCCTAACTTATTAAATTATTACACATT
* * * *
7196937 AACATTCCAAATTCTTAATTTATTAAATTATTTCACATT
1 AACATTCTAAATTCCTAACTTATTAAATTATTACACATT
7196976 AACATTCTAAATT
1 AACATTCTAAATT
7196989 ATTTTTGAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 24 0.56
38 3 0.07
39 16 0.37
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (39 bp):
AACATTCTAAATTCCTAACTTATTAAATTATTACACATT
Found at i:7197297 original size:15 final size:16
Alignment explanation
Indices: 7197277--7197310 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7197267 GGACACAAGT
*
7197277 CGATATTT-TAGTACC
1 CGATATTTCGAGTACC
7197292 CGATATTTCGAGTACC
1 CGATATTTCGAGTACC
7197308 CGA
1 CGA
7197311 AAATACGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (16 bp):
CGATATTTCGAGTACC
Found at i:7200548 original size:60 final size:61
Alignment explanation
Indices: 7200465--7200580 Score: 166
Period size: 60 Copynumber: 1.9 Consensus size: 61
7200455 AATTCAAACC
* * *
7200465 AAATTAATTAACTAATTATAAATTATGGATCAATTC-ATATTAATCAAGAAATTTAAGCCTA
1 AAATTAATTAACTAATTACAAATTATGGATCAAATCGA-ATTAATCAAGAAAATTAAGCCTA
7200526 AAATT-ATTAA-TCAATTACAAATTATGGATCAAATCGAATTAATCAAGAAAATTAA
1 AAATTAATTAACT-AATTACAAATTATGGATCAAATCGAATTAATCAAGAAAATTAA
7200581 AGCGATGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
59 1 0.02
60 43 0.86
61 6 0.12
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.34
Consensus pattern (61 bp):
AAATTAATTAACTAATTACAAATTATGGATCAAATCGAATTAATCAAGAAAATTAAGCCTA
Found at i:7204620 original size:21 final size:20
Alignment explanation
Indices: 7204589--7204665 Score: 57
Period size: 21 Copynumber: 3.5 Consensus size: 20
7204579 ATTTTCATTG
7204589 AAGAGCCACATAATTATCCCGA
1 AAGA-CCACATAATT-TCCCGA
*
7204611 AAGACCACATAGGTTTGCACCG-
1 AAGACCACATA-ATTT-C-CCGA
*
7204633 AAGTGCCACATAATTGTCCCGA
1 AAG-ACCACATAATT-TCCCGA
*
7204655 ATGACCACATA
1 AAGACCACATA
7204666 GGTTTGCACC
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
21 18 0.41
22 15 0.34
23 11 0.25
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.19
Consensus pattern (20 bp):
AAGACCACATAATTTCCCGA
Found at i:7204641 original size:23 final size:23
Alignment explanation
Indices: 7204615--7204688 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
7204605 TCCCGAAAGA
7204615 CCACATAGGTTTGCACCGAAGTG
1 CCACATAGGTTTGCACCGAAGTG
*
7204638 CCACATA--ATTGTC-CCGAA-TG
1 CCACATAGGTTTG-CACCGAAGTG
*
7204658 ACCACATAGGTTTGCACCAAAGTG
1 -CCACATAGGTTTGCACCGAAGTG
*
7204682 TCACATA
1 CCACATA
7204689 ATTGTCCCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
20 2 0.05
21 15 0.37
22 2 0.05
23 20 0.49
24 2 0.05
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (23 bp):
CCACATAGGTTTGCACCGAAGTG
Found at i:7204642 original size:44 final size:44
Alignment explanation
Indices: 7204588--7204709 Score: 183
Period size: 44 Copynumber: 2.8 Consensus size: 44
7204578 AATTTTCATT
* *
7204588 GAAGAGCCACATAATTATCCCGAAAGACCACATAGGTTTGCACC
1 GAAGTGCCACATAATTGTCCCGAAAGACCACATAGGTTTGCACC
*
7204632 GAAGTGCCACATAATTGTCCCGAATGACCACATAGGTTTGCACC
1 GAAGTGCCACATAATTGTCCCGAAAGACCACATAGGTTTGCACC
* *
7204676 AAAGTGTCACATAATTGTCCC-AAAGGACCACATA
1 GAAGTGCCACATAATTGTCCCGAAA-GACCACATA
7204710 AAACCATCGA
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
43 2 0.03
44 69 0.97
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.20
Consensus pattern (44 bp):
GAAGTGCCACATAATTGTCCCGAAAGACCACATAGGTTTGCACC
Found at i:7204707 original size:21 final size:21
Alignment explanation
Indices: 7204638--7204710 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 21
7204628 CACCGAAGTG
* *
7204638 CCACATAATTGTCCCGAATGA
1 CCACATAATTGTCCCAAAGGA
*
7204659 CCACATAGGTT-TGCACCAAAGTG-
1 CCACATA-ATTGT-C-CCAAAG-GA
*
7204682 TCACATAATTGTCCCAAAGGA
1 CCACATAATTGTCCCAAAGGA
7204703 CCACATAA
1 CCACATAA
7204711 AACCATCGAC
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
20 1 0.03
21 21 0.52
22 6 0.15
23 11 0.28
24 1 0.03
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (21 bp):
CCACATAATTGTCCCAAAGGA
Found at i:7206401 original size:21 final size:21
Alignment explanation
Indices: 7206359--7206401 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7206349 TTTTTGGGCT
* *
7206359 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
7206380 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
7206401 A
1 A
7206402 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:7207139 original size:23 final size:23
Alignment explanation
Indices: 7207095--7207139 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7207085 ATTATTATAT
*
7207095 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
7207118 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
7207140 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:7213636 original size:21 final size:22
Alignment explanation
Indices: 7213601--7213671 Score: 90
Period size: 21 Copynumber: 3.2 Consensus size: 22
7213591 CCACAACTCG
7213601 TAATTTGCACCGAAGTACCACA
1 TAATTTGCACCGAAGTACCACA
* *
7213623 TAATTT-CCCCGAAGGACCACA
1 TAATTTGCACCGAAGTACCACA
* *
7213644 TATGTTTGCACCGAAGTGCCACA
1 TA-ATTTGCACCGAAGTACCACA
7213667 TAATT
1 TAATT
7213672 ATCCCAAAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 15 0.38
22 11 0.28
23 14 0.35
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (22 bp):
TAATTTGCACCGAAGTACCACA
Found at i:7213657 original size:44 final size:44
Alignment explanation
Indices: 7213604--7213733 Score: 172
Period size: 44 Copynumber: 3.0 Consensus size: 44
7213594 CAACTCGTAA
* *
7213604 TTTGCACCGAAGTACCACATAATT-TCCCCGAAGGACCACATATG
1 TTTGCACCGAAGTGCCACATAATTAT-CCCGAAGGACCACATAGG
* * *
7213648 TTTGCACCGAAGTGCCACATAATTATCCCAAAGAATCACATAGG
1 TTTGCACCGAAGTGCCACATAATTATCCCGAAGGACCACATAGG
** *
7213692 TTTGCACATAAGTGCCACATAATTGTCCCGAAGGACCACATA
1 TTTGCACCGAAGTGCCACATAATTATCCCGAAGGACCACATA
7213734 AAACCCTCGA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
44 73 0.99
45 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (44 bp):
TTTGCACCGAAGTGCCACATAATTATCCCGAAGGACCACATAGG
Found at i:7218129 original size:14 final size:15
Alignment explanation
Indices: 7218108--7218143 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7218098 TTAAGAAATT
*
7218108 TAAAAAAATTATAAA
1 TAAAAAAATAATAAA
*
7218123 TAAAAAAATAATATA
1 TAAAAAAATAATAAA
7218138 TAAAAA
1 TAAAAA
7218144 TACACATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
TAAAAAAATAATAAA
Found at i:7218832 original size:77 final size:78
Alignment explanation
Indices: 7218744--7218897 Score: 202
Period size: 78 Copynumber: 2.0 Consensus size: 78
7218734 ATACAATTAC
* * * * * * *
7218744 GCCCAATAATGTCATGGTTAAATAAGAAA-TAGGTTGCGATTTGTAATGTTAATATTTTTATTAA
1 GCCCAAGAATGTCATGGTTAAATAAGAAAGCAGGTTGCAATCTGGAATCTTAATATTTTTAATAA
7218808 TAAAATAGGTTGT
66 TAAAATAGGTTGT
* * *
7218821 GCCCAAGAATGTCATGGTTCACTAAGAAAGCATGTTGCAATCTGGAATCTTAATATTTTTAATAA
1 GCCCAAGAATGTCATGGTTAAATAAGAAAGCAGGTTGCAATCTGGAATCTTAATATTTTTAATAA
*
7218886 TAAAATGGGTTG
66 TAAAATAGGTTG
7218898 CGTCTAAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
77 26 0.40
78 39 0.60
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.36
Consensus pattern (78 bp):
GCCCAAGAATGTCATGGTTAAATAAGAAAGCAGGTTGCAATCTGGAATCTTAATATTTTTAATAA
TAAAATAGGTTGT
Found at i:7219102 original size:186 final size:186
Alignment explanation
Indices: 7218825--7219180 Score: 543
Period size: 186 Copynumber: 1.9 Consensus size: 186
7218815 GGTTGTGCCC
* * *
7218825 AAGAATGTCATGGTTCACTAAGAAAGCATGTTGCAATCTGGAATCTTAATATTTTTAATAATAAA
1 AAGAATGTCATGGTTCACTAAGAAAGCAGGTTGCAATATGGAATCTTAATATTTATAATAATAAA
** * * * *
7218890 ATGGGTTGCGTCTAAAATGTTATCAAAGTTTAAGCTGATAGAGCCTTGGAGTTTTC-CCGATAAG
66 ATGGGTTGCACCTAAAATATTATCAAAGTTTAAGCTGATAGAGCCTTGGAATTTTCGACAATAAG
7218954 AAAATAAGTTAAAACCTGAAAATGTTATGAATATGTATAATAAATACGGTTGCATTT
131 AAAATAAGTTAAAACCTGAAAATGTTA-GAATATGTATAATAAATACGGTTGCATTT
* * *
7219011 AAGATTGTCATGGTTCACTAATAAAGCAGGTTGCAATATGGAATCTTACTATTTATAATAATAAA
1 AAGAATGTCATGGTTCACTAAGAAAGCAGGTTGCAATATGGAATCTTAATATTTATAATAATAAA
* * *
7219076 ATGGGTTGCACCTTAAATATTATCAAAGTTTAAGCTGATGGAGCCTTGGAATTTTCGATAATAAG
66 ATGGGTTGCACCTAAAATATTATCAAAGTTTAAGCTGATAGAGCCTTGGAATTTTCGACAATAAG
* *
7219141 AAAATAAGTTAAAAGCTTAAAATGTTAGAATATGTATAAT
131 AAAATAAGTTAAAACCTGAAAATGTTAGAATATGTATAAT
7219181 GTTAAATAAG
Statistics
Matches: 152, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
186 122 0.80
187 30 0.20
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (186 bp):
AAGAATGTCATGGTTCACTAAGAAAGCAGGTTGCAATATGGAATCTTAATATTTATAATAATAAA
ATGGGTTGCACCTAAAATATTATCAAAGTTTAAGCTGATAGAGCCTTGGAATTTTCGACAATAAG
AAAATAAGTTAAAACCTGAAAATGTTAGAATATGTATAATAAATACGGTTGCATTT
Found at i:7221371 original size:101 final size:100
Alignment explanation
Indices: 7221198--7221492 Score: 310
Period size: 101 Copynumber: 2.9 Consensus size: 100
7221188 AATATAAAAG
* * * * **
7221198 GTTGACAATTTTAAAAAGGTGCTACCTATAATGTTATAGTTATAAACATGTTTTGTCTTACGGTT
1 GTTGACAA-TTTAAAAAAGTGATACCTATAATGTTATACTTATAAACATATTTTGT-TTACTTTT
* * *
7221263 GCGTAATAAAAATGATTTAAAACATATAATCTTAACA
64 TCATAATAAAAATGATTTAAAACATATAATCTAAACA
* * * *
7221300 GTTGAGAATTTAAAAAAGTGAAACCTAGAATGTTATACTTATAAACCTATTTTGTATTACTTTTT
1 GTTGACAATTTAAAAAAGTGATACCTATAATGTTATACTTATAAACATATTTTGT-TTACTTTTT
* * *
7221365 CATAATATAAAA-GGTTTAAAACATGTAATGTAAACA
65 CATAATA-AAAATGATTTAAAACATATAATCTAAACA
* * * *
7221401 ATTGACAA-TTAAAAAAG-GCACTACCGATAATGTTATGCTTATAAACATGTTTTTGTTTA-TTT
1 GTTGACAATTTAAAAAAGTG-A-TACCTATAATGTTATACTTATAAACAT-ATTTTGTTTACTTT
*
7221463 TTCATAATAAAAATGATTTGAAACATATAA
63 TTCATAATAAAAATGATTTAAAACATATAA
7221493 ACATGATTTG
Statistics
Matches: 160, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
99 5 0.03
100 35 0.22
101 103 0.64
102 17 0.11
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (100 bp):
GTTGACAATTTAAAAAAGTGATACCTATAATGTTATACTTATAAACATATTTTGTTTACTTTTTC
ATAATAAAAATGATTTAAAACATATAATCTAAACA
Found at i:7222706 original size:55 final size:55
Alignment explanation
Indices: 7222622--7222730 Score: 164
Period size: 55 Copynumber: 2.0 Consensus size: 55
7222612 CTGAAAAGAG
*
7222622 AAACTTTATCTTAACATCCCCATATTAAGAAAACTATGACAAGCAATTGCAAGGC
1 AAACTTTATCTTAACATCCCCATATTAAGAAAACTATGACAAGCAACTGCAAGGC
* * ** *
7222677 AAACTTTGTCTTAACCTCCCCATATTAAGAAAGGTATGACACGCAACTGCAAGG
1 AAACTTTATCTTAACATCCCCATATTAAGAAAACTATGACAAGCAACTGCAAGG
7222731 TAAAATACTC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.25
Consensus pattern (55 bp):
AAACTTTATCTTAACATCCCCATATTAAGAAAACTATGACAAGCAACTGCAAGGC
Found at i:7224180 original size:42 final size:41
Alignment explanation
Indices: 7224106--7224198 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 41
7224096 GTCAAAATGG
* * * *
7224106 TATCGATACTGAAAGAGAGCATCGGTTCCATAGTGTAGTAC
1 TATCGATACTGAAAGAAAGCATCGGTACCATAGTATAGAAC
* * *
7224147 TATCGATACTGAGAGAAAGGTATCGGTACCATAGTATAGAAG
1 TATCGATACTGAAAGAAA-GCATCGGTACCATAGTATAGAAC
7224189 TATCGATACT
1 TATCGATACT
7224199 ATGGTAGGGG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 16 0.36
42 28 0.64
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (41 bp):
TATCGATACTGAAAGAAAGCATCGGTACCATAGTATAGAAC
Done.