Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008488.1 Hibiscus syriacus cultivar Beakdansim tig00111330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12876159
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 39 of 54
Found at i:9457693 original size:21 final size:21
Alignment explanation
Indices: 9457669--9457730 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
9457659 CCAAAAAAGA
9457669 AGCAAGGGAAGCAGAGAGAGC
1 AGCAAGGGAAGCAGAGAGAGC
*
9457690 AGC-AGCGGAAGCAGTGAGAGC
1 AGCAAG-GGAAGCAGAGAGAGC
* ***
9457711 AACATTAGAAGCAGAGAGAG
1 AGCAAGGGAAGCAGAGAGAG
9457731 AAACAAAGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.42, C:0.15, G:0.39, T:0.05
Consensus pattern (21 bp):
AGCAAGGGAAGCAGAGAGAGC
Found at i:9457762 original size:21 final size:21
Alignment explanation
Indices: 9457738--9457777 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9457728 GAGAAACAAA
*
9457738 GGCAACACAGAGAGAAGCAGC
1 GGCAACACAAAGAGAAGCAGC
*
9457759 GGCAGCACAAAGAGAAGCA
1 GGCAACACAAAGAGAAGCA
9457778 ACATATCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.23, G:0.33, T:0.00
Consensus pattern (21 bp):
GGCAACACAAAGAGAAGCAGC
Found at i:9458253 original size:44 final size:43
Alignment explanation
Indices: 9458102--9458253 Score: 157
Period size: 44 Copynumber: 3.5 Consensus size: 43
9458092 ATTTTTTGGT
* * *
9458102 GGCGTTTGTA-ACAAAAAAT-ACTGCTATATACCATACATTTTGC
1 GGCGTTTGTATCCAAAAAATGA-TGCTATATACCAGAC-TTTAGC
* * * *
9458145 TGTGTTTGTATCCTAAAAATG-TCGCTATAAACCAGACCTTTAGC
1 GGCGTTTGTATCCAAAAAATGAT-GCTATATACCAGA-CTTTAGC
**
9458189 GGCGTTTGTATCCTCAAAATGATGCTATATACCAGATCTTTAGC
1 GGCGTTTGTATCCAAAAAATGATGCTATATACCAGA-CTTTAGC
9458233 GGCGTTTGTATCCAAAAAATG
1 GGCGTTTGTATCCAAAAAATG
9458254 CCGCAAAATT
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
43 9 0.10
44 79 0.88
45 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (43 bp):
GGCGTTTGTATCCAAAAAATGATGCTATATACCAGACTTTAGC
Found at i:9458551 original size:31 final size:31
Alignment explanation
Indices: 9458502--9458563 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
9458492 CATTTATAAG
*
9458502 ACAAACACTGCTAAATATCGAC-ACCTATTGC
1 ACAAACACCGCTAAATATCG-CTACCTATTGC
* *
9458533 ACAAACGCCGCTATATATCGCTACCTATTGC
1 ACAAACACCGCTAAATATCGCTACCTATTGC
9458564 GGCGTTTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.34, C:0.31, G:0.11, T:0.24
Consensus pattern (31 bp):
ACAAACACCGCTAAATATCGCTACCTATTGC
Found at i:9462233 original size:19 final size:19
Alignment explanation
Indices: 9462209--9462246 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9462199 CAATCCTAAC
9462209 AATTAGGCTATAATTTAGG
1 AATTAGGCTATAATTTAGG
9462228 AATTAGGCTATAATTTAGG
1 AATTAGGCTATAATTTAGG
9462247 CAACTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (19 bp):
AATTAGGCTATAATTTAGG
Found at i:9465404 original size:30 final size:30
Alignment explanation
Indices: 9465348--9465405 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
9465338 GATTTCTTTA
* *
9465348 TTATCTTATTTTATTTTATTTTTAATTTCT
1 TTATCTTATTTTATTTTAGTTCTAATTTCT
*
9465378 TTATCTTTTGTTTATTTT-GTTCTAATTT
1 TTATCTTAT-TTTATTTTAGTTCTAATTT
9465406 TATTGCCTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.72
Consensus pattern (30 bp):
TTATCTTATTTTATTTTAGTTCTAATTTCT
Found at i:9465765 original size:11 final size:11
Alignment explanation
Indices: 9465751--9465775 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9465741 AAAAAAGGCA
9465751 AAAAAAAAAAC
1 AAAAAAAAAAC
9465762 AAAAAAAAAAC
1 AAAAAAAAAAC
9465773 AAA
1 AAA
9465776 TCCAAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:9475113 original size:16 final size:16
Alignment explanation
Indices: 9475094--9475148 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
9475084 TTATGCATGA
*
9475094 TTTATTTTAATAAATT
1 TTTATTTTAATAATTT
*
9475110 TTTA-TATAAT-ATTT
1 TTTATTTTAATAATTT
9475124 TTTATTTT-ATATATTT
1 TTTATTTTAATA-ATTT
9475140 TTTATTTTA
1 TTTATTTTA
9475149 TTATGTTACC
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 9 0.28
15 7 0.22
16 16 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTATTTTAATAATTT
Found at i:9475149 original size:16 final size:16
Alignment explanation
Indices: 9475118--9475149 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
9475108 TTTTTATATA
9475118 ATATTTTTTATTTTAT
1 ATATTTTTTATTTTAT
9475134 ATATTTTTTATTTTAT
1 ATATTTTTTATTTTAT
9475150 TATGTTACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
ATATTTTTTATTTTAT
Found at i:9475737 original size:2 final size:2
Alignment explanation
Indices: 9475730--9475775 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
9475720 TTACATACAT
9475730 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
9475772 AC AC
1 AC AC
9475776 CTATATATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:9475876 original size:43 final size:40
Alignment explanation
Indices: 9475818--9475904 Score: 102
Period size: 43 Copynumber: 2.1 Consensus size: 40
9475808 GACTTTTTCT
* *
9475818 TTTTGTTCCTCTTCTCTAACCGAGACTCATCCCCTTCTTCTTC
1 TTTTATTCATCTTCTCTAACCGAGACTC-T--CCTTCTTCTTC
* * *
9475861 TTTTATTCATCTTCTCTGATCGAGACTCTTCTTCTTCTTC
1 TTTTATTCATCTTCTCTAACCGAGACTCTCCTTCTTCTTC
9475901 TTTT
1 TTTT
9475905 TGTTCTTCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
40 14 0.36
42 1 0.03
43 24 0.62
ACGTcount: A:0.11, C:0.31, G:0.07, T:0.51
Consensus pattern (40 bp):
TTTTATTCATCTTCTCTAACCGAGACTCTCCTTCTTCTTC
Found at i:9475895 original size:3 final size:3
Alignment explanation
Indices: 9475887--9475946 Score: 84
Period size: 3 Copynumber: 20.0 Consensus size: 3
9475877 TGATCGAGAC
* * * *
9475887 TCT TCT TCT TCT TCT TTT TGT TCT TCT TCT TCT TTT TGT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
9475935 TCT TCT TCT TCT
1 TCT TCT TCT TCT
9475947 ATTCTCTAAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.00, C:0.27, G:0.03, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:9475912 original size:18 final size:18
Alignment explanation
Indices: 9475889--9475938 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
9475879 ATCGAGACTC
9475889 TTCTTCTTCTTCTTTTTG
1 TTCTTCTTCTTCTTTTTG
9475907 TTCTTCTTCTTCTTTTTG
1 TTCTTCTTCTTCTTTTTG
9475925 TTCTTCTTCTTCTT
1 TTCTTCTTCTTCTT
9475939 CTTCTTCTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.00, C:0.24, G:0.04, T:0.72
Consensus pattern (18 bp):
TTCTTCTTCTTCTTTTTG
Found at i:9475946 original size:18 final size:18
Alignment explanation
Indices: 9475887--9475946 Score: 93
Period size: 18 Copynumber: 3.3 Consensus size: 18
9475877 TGATCGAGAC
9475887 TCTTCTTCTTCTTCTTTT
1 TCTTCTTCTTCTTCTTTT
*
9475905 TGTTCTTCTTCTTCTTTT
1 TCTTCTTCTTCTTCTTTT
* *
9475923 TGTTCTTCTTCTTCTTCT
1 TCTTCTTCTTCTTCTTTT
9475941 TCTTCT
1 TCTTCT
9475947 ATTCTCTAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.00, C:0.27, G:0.03, T:0.70
Consensus pattern (18 bp):
TCTTCTTCTTCTTCTTTT
Found at i:9475983 original size:52 final size:52
Alignment explanation
Indices: 9475925--9476041 Score: 139
Period size: 52 Copynumber: 2.2 Consensus size: 52
9475915 CTTCTTTTTG
* *
9475925 TTCTTCTTCTTCTTCT-TCTTCTATTCTCTAACCTAGACTATTCTT-ATTCTTA
1 TTCTTCTTCTTCTTATAT-TTCTATTCTCTAACCAAGACTATT-TTCATTCTTA
* * * *
9475977 TTCTTCTTATTCTTATATTTCTCTTCTCTAACCAAGACTCTTTTCTTTCTTA
1 TTCTTCTTCTTCTTATATTTCTATTCTCTAACCAAGACTATTTTCATTCTTA
*
9476029 TTTTTCTTCTTCT
1 TTCTTCTTCTTCT
9476042 GATTCCATTT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
51 2 0.04
52 52 0.95
53 1 0.02
ACGTcount: A:0.15, C:0.26, G:0.02, T:0.58
Consensus pattern (52 bp):
TTCTTCTTCTTCTTATATTTCTATTCTCTAACCAAGACTATTTTCATTCTTA
Found at i:9478878 original size:122 final size:122
Alignment explanation
Indices: 9478661--9478907 Score: 440
Period size: 122 Copynumber: 2.0 Consensus size: 122
9478651 AATGTTTGGC
*
9478661 ATTGTTGGCCATCATATTCCCATTGGCTTTACTATTGATTAGATGCATGTTGAATTGATGATGGT
1 ATTGTTGGCCATCATATTCCCATTGGCTTTACTATTGATTAGATGCATGCTGAATTGATGATGGT
* * *
9478726 TGTTGCTGCCCATTGCTTCCTTATGAATTATTGTTGTTGGTCTGATTGAAATAAATT
66 TGTTGCTACACATTGCTGCCTTATGAATTATTGTTGTTGGTCTGATTGAAATAAATT
*
9478783 ATTGTTGGCCATCATATTCCCATTGGCTTTACTATTGATTAGATGCTTGCTGAATTGATGATGGT
1 ATTGTTGGCCATCATATTCCCATTGGCTTTACTATTGATTAGATGCATGCTGAATTGATGATGGT
*
9478848 TGTTGCTACACATTGCTGCCTTGTGAATTATTGTTGTTGGTCTGATTGAAATAAATT
66 TGTTGCTACACATTGCTGCCTTATGAATTATTGTTGTTGGTCTGATTGAAATAAATT
9478905 ATT
1 ATT
9478908 TTAACTTGTA
Statistics
Matches: 119, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.43
Consensus pattern (122 bp):
ATTGTTGGCCATCATATTCCCATTGGCTTTACTATTGATTAGATGCATGCTGAATTGATGATGGT
TGTTGCTACACATTGCTGCCTTATGAATTATTGTTGTTGGTCTGATTGAAATAAATT
Found at i:9486750 original size:20 final size:20
Alignment explanation
Indices: 9486721--9486759 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9486711 ATTCAACCAT
*
9486721 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
9486741 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
9486760 CATGGGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:9496655 original size:30 final size:31
Alignment explanation
Indices: 9496616--9496680 Score: 82
Period size: 30 Copynumber: 2.1 Consensus size: 31
9496606 ATCAGTCAAG
9496616 ATCAGGTTGTAGCAGGT-CGTGGTCTAGCAA-A
1 ATCAGGTTGTAGCA-GTACGTGGTCTAG-AAGA
*
9496647 ATCA-GTTGTAGTAGTACGTGGTCTAGAAGA
1 ATCAGGTTGTAGCAGTACGTGGTCTAGAAGA
9496677 ATCA
1 ATCA
9496681 ACTCTAGCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
29 4 0.13
30 23 0.74
31 4 0.13
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (31 bp):
ATCAGGTTGTAGCAGTACGTGGTCTAGAAGA
Found at i:9497006 original size:20 final size:20
Alignment explanation
Indices: 9496977--9497015 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9496967 ATTCTACCAC
*
9496977 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
9496997 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
9497016 CATGGGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:9497496 original size:2 final size:2
Alignment explanation
Indices: 9497489--9497542 Score: 90
Period size: 2 Copynumber: 27.0 Consensus size: 2
9497479 CTGAGGTAAA
*
9497489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
9497531 GT AT AT AT AT AT
1 AT AT AT AT AT AT
9497543 TAAGCATAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9499973 original size:13 final size:13
Alignment explanation
Indices: 9499955--9499979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9499945 ACACATAGTC
9499955 CAAATTTTTGTTG
1 CAAATTTTTGTTG
9499968 CAAATTTTTGTT
1 CAAATTTTTGTT
9499980 ACCTAGGCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.56
Consensus pattern (13 bp):
CAAATTTTTGTTG
Found at i:9510126 original size:14 final size:14
Alignment explanation
Indices: 9510107--9510143 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
9510097 CTATAAAAAG
9510107 AAATTTACCCCTCA
1 AAATTTACCCCTCA
*
9510121 AAATTTACCCCTTA
1 AAATTTACCCCTCA
9510135 AAATTTACC
1 AAATTTACC
9510144 TGAGTGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.32
Consensus pattern (14 bp):
AAATTTACCCCTCA
Found at i:9516508 original size:32 final size:32
Alignment explanation
Indices: 9516472--9516540 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
9516462 ATTTTACATT
*
9516472 TCATTCAATTCAATTTTTTAACTTGTCATCAC
1 TCATTCAATCCAATTTTTTAACTTGTCATCAC
**
9516504 TCATTTTATCCAATTTTTTAACTTGTCATCAC
1 TCATTCAATCCAATTTTTTAACTTGTCATCAC
9516536 TCATT
1 TCATT
9516541 TTATCCGGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.22, G:0.03, T:0.49
Consensus pattern (32 bp):
TCATTCAATCCAATTTTTTAACTTGTCATCAC
Found at i:9516541 original size:32 final size:32
Alignment explanation
Indices: 9516482--9516546 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
9516472 TCATTCAATT
9516482 CAATTTTTTAACTTGTCATCACTCATTTTATC
1 CAATTTTTTAACTTGTCATCACTCATTTTATC
9516514 CAATTTTTTAACTTGTCATCACTCATTTTATC
1 CAATTTTTTAACTTGTCATCACTCATTTTATC
9516546 C
1 C
9516547 GGAGAATGAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.23, G:0.03, T:0.49
Consensus pattern (32 bp):
CAATTTTTTAACTTGTCATCACTCATTTTATC
Found at i:9516803 original size:21 final size:19
Alignment explanation
Indices: 9516779--9516817 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
9516769 TCCATGTCCA
*
9516779 TTTATTAAATACCAAGACCCT
1 TTTA-TAAATAACAA-ACCCT
9516800 TTTATAAATAACAAACCC
1 TTTATAAATAACAAACCC
9516818 ATTACAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.44, C:0.23, G:0.03, T:0.31
Consensus pattern (19 bp):
TTTATAAATAACAAACCCT
Found at i:9522232 original size:38 final size:37
Alignment explanation
Indices: 9522148--9522287 Score: 194
Period size: 38 Copynumber: 3.8 Consensus size: 37
9522138 TCGAAAATAT
*
9522148 TTTTTGAAAACATATAATATATAGTTTTTAAAAATGG
1 TTTTTGAAAACATATAATATATAGTTTTTAAAAACGG
*
9522185 -TTTTGAAAACATATAATATATAGTTTTTAAAAGGCGG
1 TTTTTGAAAACATATAATATATAGTTTTTAAAA-ACGG
*
9522222 TTTTTAAAAACATATAATATATAGTTTTTAAAAAACGG
1 TTTTTGAAAACATATAATATATAGTTTTT-AAAAACGG
* *
9522260 TTTTTGAAAACGT-TTATATTATAGTTTT
1 TTTTTGAAAACATATAATA-TATAGTTTT
9522288 ATCGACCCCC
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
36 32 0.35
37 6 0.07
38 50 0.54
39 4 0.04
ACGTcount: A:0.41, C:0.04, G:0.11, T:0.44
Consensus pattern (37 bp):
TTTTTGAAAACATATAATATATAGTTTTTAAAAACGG
Found at i:9522232 original size:74 final size:76
Alignment explanation
Indices: 9522148--9522287 Score: 214
Period size: 74 Copynumber: 1.9 Consensus size: 76
9522138 TCGAAAATAT
* *
9522148 TTTTTGAAAACATATAATATATAGTTTTT-AAAAATGG-TTTTGAAAACATATAATA-TATAGTT
1 TTTTTAAAAACATATAATATATAGTTTTTAAAAAACGGTTTTTGAAAACAT-TAATATTATAGTT
9522210 TTTAAAAGGCGG
65 TTTAAAAGGCGG
* *
9522222 TTTTTAAAAACATATAATATATAGTTTTTAAAAAACGGTTTTTGAAAACGTTTATATTATAGTTT
1 TTTTTAAAAACATATAATATATAGTTTTTAAAAAACGGTTTTTGAAAACATTAATATTATAGTTT
9522287 T
66 T
9522288 ATCGACCCCC
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
74 28 0.47
75 11 0.19
76 20 0.34
ACGTcount: A:0.41, C:0.04, G:0.11, T:0.44
Consensus pattern (76 bp):
TTTTTAAAAACATATAATATATAGTTTTTAAAAAACGGTTTTTGAAAACATTAATATTATAGTTT
TTAAAAGGCGG
Found at i:9523656 original size:4 final size:4
Alignment explanation
Indices: 9523632--9523682 Score: 57
Period size: 4 Copynumber: 12.0 Consensus size: 4
9523622 TTATTTTCCA
* *
9523632 ATTT TTTT ATTTT ATTTT ATTT ATTT ATTT ATTTT ATTT ATTT AGTT ATTT
1 ATTT ATTT A-TTT A-TTT ATTT ATTT ATTT A-TTT ATTT ATTT ATTT ATTT
9523683 CATGTCCAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
4 28 0.68
5 13 0.32
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (4 bp):
ATTT
Found at i:9523664 original size:17 final size:17
Alignment explanation
Indices: 9523632--9523682 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
9523622 TTATTTTCCA
*
9523632 ATTTTTTTATTTTATTTT
1 ATTTATTTA-TTTATTTT
9523650 ATTTATTTATTTATTTT
1 ATTTATTTATTTATTTT
*
9523667 ATTTATTTAGTTATTT
1 ATTTATTTATTTATTT
9523683 CATGTCCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 23 0.74
18 8 0.26
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (17 bp):
ATTTATTTATTTATTTT
Found at i:9523675 original size:13 final size:12
Alignment explanation
Indices: 9523632--9523674 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 12
9523622 TTATTTTCCA
9523632 ATTTTTTTATTTT
1 ATTTTTTTA-TTT
9523645 ATTTTATTTATTT
1 ATTTT-TTTATTT
9523658 ATTTATTTTATTT
1 ATTT-TTTTATTT
9523671 ATTT
1 ATTT
9523675 AGTTATTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 23 0.82
14 5 0.18
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
ATTTTTTTATTT
Found at i:9524166 original size:23 final size:23
Alignment explanation
Indices: 9524135--9524212 Score: 120
Period size: 23 Copynumber: 3.3 Consensus size: 23
9524125 AACCGAGAGC
* * *
9524135 AATACCCAAACAAAATACCATCAA
1 AATACCAAAACAAAGT-GCATCAA
9524159 AATACCAAAACAAAGTGCATCAA
1 AATACCAAAACAAAGTGCATCAA
9524182 AATACCAAAACAAAGTGCATCAA
1 AATACCAAAACAAAGTGCATCAA
9524205 AATACCAA
1 AATACCAA
9524213 GCAAAGCATT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 37 0.73
24 14 0.27
ACGTcount: A:0.58, C:0.24, G:0.05, T:0.13
Consensus pattern (23 bp):
AATACCAAAACAAAGTGCATCAA
Found at i:9526600 original size:376 final size:376
Alignment explanation
Indices: 9526011--9526749 Score: 1190
Period size: 376 Copynumber: 2.0 Consensus size: 376
9526001 TAAAACTCAA
* *
9526011 ATAATTTGCATTAATGGAAAAAGGGGTTATAATGCAAGAGGTGAAAAATGCAGAGGTCCGGCTAT
1 ATAATTTGCATTAATGGAAAAAGGGGTTATAATGCAAGAGGTGAAAAATGCAGAGGTCCAGATAT
* *
9526076 GGTCAGAGAATACTCAGAAAGAAAAAGGGGACAGTCTACAAAGTAGTTATGTGTCAGATATGGTT
66 GGTCAGAGAAGACTCAGAAAGAAAAAGGGGACAGTCTACAAAGTAGCTATGTGTCAGATATGGTT
* * * * * *
9526141 GGTTATGCTTCTGTCAGCCTTAAACATAATGATATTCAGGAGTTACGGAGAATTTGGGATAGCTG
131 GGTTATGCTTCTATCAGCCTTAAACAGAACGATATTCAGGAGTTACGGAGAATTTGGGACAACTA
* * *
9526206 GAAAAATGACAGGAAACAAAGATTCTGCCAACGGTACGTTGATATCGCACATTTGCTATATGTGA
196 GAAAAATGACAAGAAACAAAGATTCTGCCAACGGTACGGTGATATCGCACATTTGCTATATGTCA
* * * * * * *
9526271 AGATAGATTATTTTTTTATTCGAGCCTTAGAGCAATTTTGGAATCTGGGGTATATGTGTTTTACA
261 AAATAGATGATTTTTTTATTCGAGCATTAGAGAAATTTTGGAATCTAGGGTACATGTGCTTTACA
9526336 TTCAACCAAGAAGACATGGTGCCCAAAATCGAGGAATAATACAGAGGGGTT
326 TTCAACCAAGAAGACATGGTGCCCAAAATCGAGGAATAATACAGAGGGGTT
* *
9526387 ATAATTTGCATTAATGGACAAAGGGGTTATAATGCAAGAGGTGAAAAATGTAGAGGTCCAGATAT
1 ATAATTTGCATTAATGGAAAAAGGGGTTATAATGCAAGAGGTGAAAAATGCAGAGGTCCAGATAT
* * * *
9526452 GGTCAGAGAAGACTTAGAAAGAAAAAGGGGATAGTCTATAAAGTAGCTATGTGTTAGATATGGTT
66 GGTCAGAGAAGACTCAGAAAGAAAAAGGGGACAGTCTACAAAGTAGCTATGTGTCAGATATGGTT
* *
9526517 GGTTATGCTTCTATCAGCCTTAAACAGAACGATATTCAGGAGTTATGGAGCATTTGGGACAACTA
131 GGTTATGCTTCTATCAGCCTTAAACAGAACGATATTCAGGAGTTACGGAGAATTTGGGACAACTA
9526582 GAAAAATGACAAGAAACAAAGATTCTGCCAACGGTACGGTGATATCGCACATTTGCTATATGTCA
196 GAAAAATGACAAGAAACAAAGATTCTGCCAACGGTACGGTGATATCGCACATTTGCTATATGTCA
* *
9526647 AAATATATGATTTTTTTATTCGAGCATTAGTGAAATTTTGGAATCTAGGGTACATGTGCTTTACA
261 AAATAGATGATTTTTTTATTCGAGCATTAGAGAAATTTTGGAATCTAGGGTACATGTGCTTTACA
* *
9526712 TTCAACCAAGAAGACATGGTTCCCACAATCGAGGAATA
326 TTCAACCAAGAAGACATGGTGCCCAAAATCGAGGAATA
9526750 CACTACCCTA
Statistics
Matches: 331, Mismatches: 32, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
376 331 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (376 bp):
ATAATTTGCATTAATGGAAAAAGGGGTTATAATGCAAGAGGTGAAAAATGCAGAGGTCCAGATAT
GGTCAGAGAAGACTCAGAAAGAAAAAGGGGACAGTCTACAAAGTAGCTATGTGTCAGATATGGTT
GGTTATGCTTCTATCAGCCTTAAACAGAACGATATTCAGGAGTTACGGAGAATTTGGGACAACTA
GAAAAATGACAAGAAACAAAGATTCTGCCAACGGTACGGTGATATCGCACATTTGCTATATGTCA
AAATAGATGATTTTTTTATTCGAGCATTAGAGAAATTTTGGAATCTAGGGTACATGTGCTTTACA
TTCAACCAAGAAGACATGGTGCCCAAAATCGAGGAATAATACAGAGGGGTT
Found at i:9527819 original size:15 final size:15
Alignment explanation
Indices: 9527799--9527862 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
9527789 ATCCTTTATC
9527799 CACATAGAACACATT
1 CACATAGAACACATT
**
9527814 CACATA-AAGCATTTT
1 CACATAGAA-CACATT
*
9527829 CACGTAGAACACATT
1 CACATAGAACACATT
* *
9527844 CACATATAACATATT
1 CACATAGAACACATT
9527859 CACA
1 CACA
9527863 AACTAATAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
14 2 0.05
15 35 0.90
16 2 0.05
ACGTcount: A:0.44, C:0.25, G:0.06, T:0.25
Consensus pattern (15 bp):
CACATAGAACACATT
Found at i:9527861 original size:30 final size:30
Alignment explanation
Indices: 9527803--9527861 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
9527793 TTTATCCACA
*
9527803 TAGAACACATTCACATAAAGCATTTTCACG
1 TAGAACACATTCACATAAAGCATATTCACG
9527833 TAGAACACATTCACATATAA-CATATTCAC
1 TAGAACACATTCACATA-AAGCATATTCAC
9527862 AAACTAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (30 bp):
TAGAACACATTCACATAAAGCATATTCACG
Found at i:9528369 original size:20 final size:21
Alignment explanation
Indices: 9528346--9528395 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
9528336 CTCATTCTTG
9528346 GTATCGATAC-A-TCCACATCA
1 GTATCGATACTACTCCA-ATCA
*
9528366 GTATCGATACTACTTCAATCA
1 GTATCGATACTACTCCAATCA
9528387 GTATCGATA
1 GTATCGATA
9528396 TTGTTCATCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 10 0.37
21 14 0.52
22 3 0.11
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (21 bp):
GTATCGATACTACTCCAATCA
Found at i:9537169 original size:64 final size:63
Alignment explanation
Indices: 9537033--9537170 Score: 156
Period size: 64 Copynumber: 2.2 Consensus size: 63
9537023 GCACTAAAAG
* **
9537033 TGCATCGATGCATGAAATGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATACATGGCTGG
1 TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATACATGGC-AA
* * *
9537097 TGCATCGATGCATCAAATGCATTCGATGTTTTTATAAA-A-CTCTGAGTGCATCGATTCATGG-A
1 TGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGC-CAGAGTGCATCGATACATGGCA
9537159 A
63 A
9537160 TGCATTCGATG
1 TGCA-TCGATG
9537171 TTCAATTTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
63 4 0.06
64 34 0.53
65 23 0.36
66 3 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (63 bp):
TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATACATGGCAA
Found at i:9538548 original size:25 final size:24
Alignment explanation
Indices: 9538515--9538590 Score: 66
Period size: 24 Copynumber: 3.1 Consensus size: 24
9538505 TGCACTAAAA
* *
9538515 TTGCAATCGAAGCTGTCGCGTAGAAT
1 TTGC-ATCGAAG-TGCCACGTAGAAT
9538541 TTGCATCGAAGTGCCACGTAGAAT
1 TTGCATCGAAGTGCCACGTAGAAT
* * *
9538565 ATGCA-CAGAATTGCCACATAG-AT
1 TTGCATC-GAAGTGCCACGTAGAAT
9538588 TTG
1 TTG
9538591 TCCCAAAGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
23 5 0.12
24 27 0.63
25 7 0.16
26 4 0.09
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (24 bp):
TTGCATCGAAGTGCCACGTAGAAT
Found at i:9538656 original size:23 final size:23
Alignment explanation
Indices: 9538578--9538657 Score: 79
Period size: 23 Copynumber: 3.4 Consensus size: 23
9538568 CACAGAATTG
* *
9538578 CCACATAGATTTGTCCCAAAGGA
1 CCACATAGAATTGTCCCGAAGGA
* * * *
9538601 CCGCGTGGAATTTGTCCCGAAGAA
1 CCACATAGAA-TTGTCCCGAAGGA
*
9538625 ACACATAGAATTGTCCCGAAGGA
1 CCACATAGAATTGTCCCGAAGGA
*
9538648 CCACGTAGAA
1 CCACATAGAA
9538658 CCCTCAACTC
Statistics
Matches: 43, Mismatches: 13, Indels: 2
0.74 0.22 0.03
Matches are distributed among these distances:
23 26 0.60
24 17 0.40
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.19
Consensus pattern (23 bp):
CCACATAGAATTGTCCCGAAGGA
Found at i:9538784 original size:15 final size:15
Alignment explanation
Indices: 9538764--9538830 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
9538754 ATCCTTTATC
*
9538764 CACATAGAACACATT
1 CACATAAAACACATT
**
9538779 CACATAAAAGCATTTT
1 CACATAAAA-CACATT
9538795 CA-AGTAAAACACATT
1 CACA-TAAAACACATT
* *
9538810 CACATATAACATATT
1 CACATAAAACACATT
9538825 CACATA
1 CACATA
9538831 CTAATAATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
15 30 0.71
16 12 0.29
ACGTcount: A:0.48, C:0.22, G:0.04, T:0.25
Consensus pattern (15 bp):
CACATAAAACACATT
Found at i:9546085 original size:261 final size:250
Alignment explanation
Indices: 9545580--9546096 Score: 928
Period size: 261 Copynumber: 2.0 Consensus size: 250
9545570 AGCTCTCATA
9545580 TCATATAACATGGGCTTTAATATGAATACATTTCATTTCATATCTCTTTCATCACTTTTCATATA
1 TCATATAACATGGGCTTTAATATGAATACATTTCATTTCATATCTCTTTCATCACTTTTCATATA
9545645 AACCATAATCTTTCCATTATTTCACATACCTGGATTATATTCTCTGGCAATGATATTCGTTCATT
66 AACCATAATCTTTCCATTATTTCACATACCTGGATTATATTCTCTGGCAATGATATTCGTTCATT
9545710 CAATGTCATATGAACATATGAATATGCATGCAATCACTATTATAATATACGTATGCATATACATG
131 CAATGTCATATGAACATATGAATATGCATGCAATCACTATTATAATATACGTATGCATATACATG
9545775 GGTATGGAATCATTAATTCAACTATCAGAGTTGGACTTATCACAAGTCTTGTCTC
196 GGTATGGAATCATTAATTCAACTATCAGAGTTGGACTTATCACAAGTCTTGTCTC
9545830 TCATATAACATGGGCTTTAATATGAATACATTTCTCATTTCATATCTCTTTCATCACTTTTCATA
1 TCATATAACATGGGCTTTAATATGAATACA-TT-TCATTTCATATCTCTTTCATCACTTTTCATA
9545895 TAAACCCATAATCTTTTCCATTATTTCACATACCTGGATTATATTCTCTGGCAATGATATTCGTT
64 TAAA-CCATAATC-TTTCCATTATTTCACATACCTGGATTATATTCTCTGGCAATGATATTCGTT
9545960 CATTCAATGTCATATGAACATATAATGAATTATGCATGCAATCACTATTATAATAATATACGTAT
127 CATTCAATGTCATATGAAC--AT-ATGAA-TATGCATGCAATCACTA-T-T-ATAATATACGTAT
9546025 GCATATACATGGGTATGGAATCATTAATTCAACTATCAGAGTTGGACTTATCACAAGTCTTGTCT
185 GCATATACATGGGTATGGAATCATTAATTCAACTATCAGAGTTGGACTTATCACAAGTCTTGTCT
9546090 C
250 C
9546091 T-ATATA
1 TCATATA
9546097 CTAACTATAA
Statistics
Matches: 256, Mismatches: 0, Indels: 12
0.96 0.00 0.04
Matches are distributed among these distances:
250 30 0.12
251 2 0.01
252 35 0.14
253 8 0.03
254 70 0.27
256 2 0.01
257 5 0.02
258 17 0.07
259 1 0.00
260 6 0.02
261 80 0.31
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (250 bp):
TCATATAACATGGGCTTTAATATGAATACATTTCATTTCATATCTCTTTCATCACTTTTCATATA
AACCATAATCTTTCCATTATTTCACATACCTGGATTATATTCTCTGGCAATGATATTCGTTCATT
CAATGTCATATGAACATATGAATATGCATGCAATCACTATTATAATATACGTATGCATATACATG
GGTATGGAATCATTAATTCAACTATCAGAGTTGGACTTATCACAAGTCTTGTCTC
Found at i:9552695 original size:22 final size:22
Alignment explanation
Indices: 9552646--9552719 Score: 93
Period size: 22 Copynumber: 3.5 Consensus size: 22
9552636 TTCAGTATTT
*
9552646 GTCCCGAATGACCACT--ATA-
1 GTCCCGAAGGACCACTAGATAC
9552665 -TCCCGAAGGACCACTAGATAC
1 GTCCCGAAGGACCACTAGATAC
* *
9552686 GTCCCAAAGGACCACTGGATAC
1 GTCCCGAAGGACCACTAGATAC
9552708 GTCCCGAAGGAC
1 GTCCCGAAGGAC
9552720 AAATATACCC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
18 14 0.30
20 3 0.06
22 30 0.64
ACGTcount: A:0.31, C:0.32, G:0.22, T:0.15
Consensus pattern (22 bp):
GTCCCGAAGGACCACTAGATAC
Found at i:9556656 original size:22 final size:21
Alignment explanation
Indices: 9556621--9556665 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
9556611 AAAATAAACG
* *
9556621 ATATATATAGTTTTTGAAGAT
1 ATATATATAATTTTTGAAAAT
9556642 ATATAGTATAATTTTTGAAAAT
1 ATATA-TATAATTTTTGAAAAT
9556664 AT
1 AT
9556666 TTTTTGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (21 bp):
ATATATATAATTTTTGAAAAT
Found at i:9556707 original size:37 final size:36
Alignment explanation
Indices: 9556666--9556783 Score: 118
Period size: 37 Copynumber: 3.3 Consensus size: 36
9556656 TTGAAAATAT
*
9556666 TTTTTGAAAACATAAAATATATAGTTTTAAAAAATGG
1 TTTTTGAAAACAT-ATATATATAGTTTTAAAAAATGG
*
9556703 TTTTTGAAAA-AGTATATAATATAGTTTTGAAAACAT--
1 TTTTTGAAAACA-TATAT-ATATAGTTTT-AAAAAATGG
* * * *
9556739 ATTTTGAAAACATATACATATAGTTTT-TAAAACGG
1 TTTTTGAAAACATATATATATAGTTTTAAAAAATGG
9556774 TTTTTGAAAA
1 TTTTTGAAAA
9556784 AAAATATAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
33 3 0.04
35 19 0.28
36 17 0.25
37 22 0.33
38 6 0.09
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (36 bp):
TTTTTGAAAACATATATATATAGTTTTAAAAAATGG
Found at i:9556745 original size:13 final size:13
Alignment explanation
Indices: 9556727--9556753 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9556717 TATAATATAG
9556727 TTTTGAAAACATA
1 TTTTGAAAACATA
9556740 TTTTGAAAACATA
1 TTTTGAAAACATA
9556753 T
1 T
9556754 ACATATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (13 bp):
TTTTGAAAACATA
Found at i:9556779 original size:35 final size:35
Alignment explanation
Indices: 9556666--9556783 Score: 123
Period size: 35 Copynumber: 3.3 Consensus size: 35
9556656 TTGAAAATAT
* *
9556666 TTTTTGAAAACATAAAATATATAGTTTTAAAAAATGG
1 TTTTTGAAAACATATAA-ATATAGTTTT-AAAAACGG
* *
9556703 TTTTTGAAAA-AGTATATAATATAGTTTTGAAAAC-A
1 TTTTTGAAAACA-TATA-AATATAGTTTTAAAAACGG
* *
9556738 TATTTTGAAAACATATACATATAGTTTTTAAAACGG
1 T-TTTTGAAAACATATAAATATAGTTTTAAAAACGG
9556774 TTTTTGAAAA
1 TTTTTGAAAA
9556784 AAAATATAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
35 25 0.36
36 19 0.28
37 24 0.35
38 1 0.01
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (35 bp):
TTTTTGAAAACATATAAATATAGTTTTAAAAACGG
Found at i:9556798 original size:73 final size:73
Alignment explanation
Indices: 9556654--9556796 Score: 200
Period size: 71 Copynumber: 2.0 Consensus size: 73
9556644 ATAGTATAAT
* * * * **
9556654 TTTTGAAAATATTTTTTGAAAACATAAAATATATAGTTTTAAAAAATGGTTTTTGAAAAAGTATA
1 TTTTGAAAACATATTTTGAAAACATAAAACATATAGTTTTAAAAAACGGTTTTTGAAAAAAAATA
9556719 TAATATAG
66 TAATATAG
* *
9556727 TTTTGAAAACATATTTTGAAAACAT-ATACATATAGTTTT-TAAAACGGTTTTTGAAAAAAAATA
1 TTTTGAAAACATATTTTGAAAACATAAAACATATAGTTTTAAAAAACGGTTTTTGAAAAAAAATA
9556790 TAATATA
66 TAATATA
9556797 TATAATTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
71 27 0.44
72 12 0.19
73 23 0.37
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (73 bp):
TTTTGAAAACATATTTTGAAAACATAAAACATATAGTTTTAAAAAACGGTTTTTGAAAAAAAATA
TAATATAG
Found at i:9558584 original size:25 final size:27
Alignment explanation
Indices: 9558541--9558595 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
9558531 CTCTTATTTT
* *
9558541 TATTTATTTAAATATTATAT-TAT-TA
1 TATTTAATTAAATAATATATATATATA
*
9558566 TATTTAATTACATAATATATATATATA
1 TATTTAATTAAATAATATATATATATA
9558593 TAT
1 TAT
9558596 ATTATTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 17 0.68
26 3 0.12
27 5 0.20
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (27 bp):
TATTTAATTAAATAATATATATATATA
Found at i:9558716 original size:5 final size:5
Alignment explanation
Indices: 9558691--9558977 Score: 110
Period size: 5 Copynumber: 57.8 Consensus size: 5
9558681 ATATATACTT
* * *
9558691 TTTTA TATTTA TTTTA -CTTA TTTTA TTTTA -TTTA TCTTTA TTGTA TTTATC
1 TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA TTT-TA
* * *
9558742 TTGTTCA TCTTTA TTTTA TTTTTA TTTT- CTCTA TCTTA TTTTA -TTTA
1 TT-TT-A T-TTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
* *
9558789 -TTTA TTTTA -TTTA -TTTA -TTTA TATTA TTATTA TTTTA TTTTAA TTATTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTT-A TT-TTA
* * *
9558838 TTTTC TTTTA TCTTT- TTTT- TCTTT- TTTTG TTTTT TCTTTA TCTTTA
1 TTTTA TTTTA T-TTTA TTTTA T-TTTA TTTTA TTTTA T-TTTA T-TTTA
* * * * *
9558884 TTTCA CTTGT- TTTTA TTTT- CTTTA -TATA TTTTTA TTTTA -TTCA TTTGT-
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTT-TA
* *
9558932 TTTTA TTTTC TTTATA TATT- TTTTA -TTT- TTTTA TTTTA -TTTA TTTT
1 TTTTA TTTTA TTT-TA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
9558978 CGTTACCTTT
Statistics
Matches: 218, Mismatches: 32, Indels: 64
0.69 0.10 0.20
Matches are distributed among these distances:
4 62 0.28
5 97 0.44
6 52 0.24
7 6 0.03
8 1 0.00
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:9558724 original size:9 final size:9
Alignment explanation
Indices: 9558696--9558977 Score: 138
Period size: 9 Copynumber: 31.1 Consensus size: 9
9558686 TACTTTTTTA
9558696 TATTTATTT
1 TATTTATTT
*
9558705 TACTTATTT
1 TATTTATTT
9558714 TATTTTATTT
1 TA-TTTATTT
* *
9558724 ATCTTTATTG
1 -TATTTATTT
*
9558734 TATTTATCT
1 TATTTATTT
* *
9558743 TGTTCATCTT
1 TATTTAT-TT
*
9558753 TATTT-TAT
1 TATTTATTT
9558761 T-TTTATTT
1 TATTTATTT
* * *
9558769 TCTCTATCT
1 TATTTATTT
9558778 TATTT-TATT
1 TATTTAT-TT
9558787 TATTTATTT
1 TATTTATTT
9558796 TATTTA-TT
1 TATTTATTT
*
9558804 TATTTATAT
1 TATTTATTT
*
9558813 TA-TTATTA
1 TATTTATTT
9558821 T-TTTATTT
1 TATTTATTT
*
9558829 TAATTATTT
1 TATTTATTT
*
9558838 T-TTTCTTT
1 TATTTATTT
*
9558846 TATCT-TTT
1 TATTTATTT
*
9558854 T-TTTCTTT
1 TATTTATTT
* *
9558862 TTTTGTTTTT
1 TATT-TATTT
*
9558872 TCTTTATCTT
1 TATTTAT-TT
9558882 TATTTCACTTGT
1 TATTT-A-TT-T
9558894 T-TTTATTT
1 TATTTATTT
*
9558902 TCTTTATATAT
1 TATTTAT-T-T
9558913 T-TTTATTT
1 TATTTATTT
*
9558921 TATTCATTT
1 TATTTATTT
*
9558930 GTTTTTATTT
1 -TATTTATTT
*
9558940 TCTTTATATAT
1 TATTTAT-T-T
*
9558951 TTTTTATTT
1 TATTTATTT
9558960 T-TTTATTT
1 TATTTATTT
9558968 TATTTATTT
1 TATTTATTT
9558977 T
1 T
9558978 CGTTACCTTT
Statistics
Matches: 210, Mismatches: 37, Indels: 52
0.70 0.12 0.17
Matches are distributed among these distances:
7 5 0.02
8 51 0.24
9 90 0.43
10 46 0.22
11 15 0.07
12 3 0.01
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (9 bp):
TATTTATTT
Found at i:9558790 original size:4 final size:4
Alignment explanation
Indices: 9558781--9558828 Score: 55
Period size: 4 Copynumber: 11.8 Consensus size: 4
9558771 TCTATCTTAT
9558781 TTTA TTTA TTTA TTTTA TTTA TTTA TTTA TATTA -TTA -TTA TTTTA TTT
1 TTTA TTTA TTTA -TTTA TTTA TTTA TTTA T-TTA TTTA TTTA -TTTA TTT
9558829 TAATTATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 6 0.15
4 24 0.60
5 10 0.25
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:9558828 original size:46 final size:46
Alignment explanation
Indices: 9558751--9558841 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 46
9558741 CTTGTTCATC
* * *
9558751 TTTATTTTATTTTTATTTTCTCTATCTTATTTTATTTATTTATTTTA
1 TTTATTTTATTTATATTTTATCTATCTTATTTTAATTATTT-TTTTA
*
9558798 TTTA-TTTATTTATATTATTAT-TATTTTATTTTAATTATTTTTTT
1 TTTATTTTATTTATATT-TTATCTATCTTATTTTAATTATTTTTTT
9558842 CTTTTATCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
45 4 0.10
46 28 0.72
47 7 0.18
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (46 bp):
TTTATTTTATTTATATTTTATCTATCTTATTTTAATTATTTTTTTA
Found at i:9558854 original size:16 final size:16
Alignment explanation
Indices: 9558835--9558882 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
9558825 ATTTTAATTA
9558835 TTTTTTTCTTTTATCT
1 TTTTTTTCTTTTATCT
9558851 TTTTTTTCTTTT-T-T
1 TTTTTTTCTTTTATCT
9558865 TGTTTTTTC-TTTATCT
1 T-TTTTTTCTTTTATCT
9558881 TT
1 TT
9558883 ATTTCACTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.17
15 10 0.34
16 14 0.48
ACGTcount: A:0.04, C:0.10, G:0.02, T:0.83
Consensus pattern (16 bp):
TTTTTTTCTTTTATCT
Found at i:9558917 original size:19 final size:19
Alignment explanation
Indices: 9558893--9558978 Score: 97
Period size: 19 Copynumber: 4.6 Consensus size: 19
9558883 ATTTCACTTG
9558893 TTTTTATTTTCTTTATATA
1 TTTTTATTTTCTTTATATA
* * * *
9558912 TTTTTATTTTATTCATTTG
1 TTTTTATTTTCTTTATATA
9558931 TTTTTATTTTCTTTATATA
1 TTTTTATTTTCTTTATATA
9558950 TTTTTTATTTT-TTTAT-T-
1 -TTTTTATTTTCTTTATATA
9558967 TTATTTATTTTC
1 TT-TTTATTTTC
9558979 GTTACCTTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
16 2 0.04
17 8 0.14
18 1 0.02
19 35 0.62
20 10 0.18
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (19 bp):
TTTTTATTTTCTTTATATA
Found at i:9558937 original size:38 final size:39
Alignment explanation
Indices: 9558874--9558978 Score: 144
Period size: 38 Copynumber: 2.7 Consensus size: 39
9558864 TTGTTTTTTC
*
9558874 TTTATCTTTATTTCACTTGTTTTTATTTTCTTTATATA-TT
1 TTTAT-TTTA-TTCATTTGTTTTTATTTTCTTTATATATTT
9558914 TTTATTTTATTCATTTGTTTTTATTTTCTTTATATATTT
1 TTTATTTTATTCATTTGTTTTTATTTTCTTTATATATTT
* *
9558953 TTTATTTT-TTTATTT-TATTTATTTTC
1 TTTATTTTATTCATTTGTTTTTATTTTC
9558979 GTTACCTTTT
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
37 10 0.16
38 32 0.52
39 14 0.23
40 5 0.08
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (39 bp):
TTTATTTTATTCATTTGTTTTTATTTTCTTTATATATTT
Found at i:9563890 original size:22 final size:22
Alignment explanation
Indices: 9563856--9563898 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
9563846 TCCTCTTTTT
*
9563856 TTTATTTAAATAT-TATATTATA
1 TTTAATTAAATATGT-TATTATA
*
9563878 TTTAATTATATATGTTATTAT
1 TTTAATTAAATATGTTATTAT
9563899 TATTATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTAATTAAATATGTTATTATA
Found at i:9563947 original size:5 final size:5
Alignment explanation
Indices: 9563937--9564232 Score: 131
Period size: 5 Copynumber: 59.2 Consensus size: 5
9563927 TTAATGTATA
****
9563937 TATTT TATTTT TATTT TATTT T-TTT TATTCCT T-TTT CCCCT TATTAT
1 TATTT TA-TTT TATTT TATTT TATTT TATT--T TATTT TATTT TATT-T
* * *
9563984 TCTTT T-TTA TATT- TATTT TA-CT TATTT TATTT TA-TT TATTT TATCTT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TAT-TT
* * * *
9564031 TATTG TATTT ATCTTGT TCATCTT TATTT TATTTT TATTT T-CTC TATTT
1 TATTT TATTT -TATT-T T-AT-TT TATTT TA-TTT TATTT TATTT TATTT
* **
9564080 TATTT TA-TT TATTT TA-TG TATAG TATTTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT TA-TTT TATTT TATTT TATTT TATTT
* * *
9564129 TATTCCTT TATCT TATTT T-TTT T-CTT TATCTT TATTT CA-TT T-TTT
1 TA-T--TT TATTT TATTT TATTT TATTT TAT-TT TATTT TATTT TATTT
* * * *
9564174 TATTT T-CTT TATAT T-TTT TATTT TA-TT CATTT ACTTTTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT --TATTT TATTT TATTT
9564223 TA-TT TATTT T
1 TATTT TATTT T
9564233 CGTTACCTTT
Statistics
Matches: 221, Mismatches: 37, Indels: 66
0.68 0.11 0.20
Matches are distributed among these distances:
4 53 0.24
5 117 0.53
6 36 0.16
7 10 0.05
8 5 0.02
ACGTcount: A:0.18, C:0.08, G:0.01, T:0.73
Consensus pattern (5 bp):
TATTT
Found at i:9563964 original size:9 final size:9
Alignment explanation
Indices: 9563939--9564232 Score: 85
Period size: 9 Copynumber: 31.0 Consensus size: 9
9563929 AATGTATATA
9563939 TTTTATTTTT
1 TTTTA-TTTT
9563949 ATTTTATTTT
1 -TTTTATTTT
*
9563959 TTTTATTCCT
1 TTTTATT-TT
****
9563969 TTTTCCCCT
1 TTTTATTTT
*
9563978 TATTATTCTT
1 TTTTATT-TT
9563988 TTTTATATTT
1 TTTTAT-TTT
* *
9563998 ATTTTACTTA
1 -TTTTATTTT
9564008 TTTTATTTT
1 TTTTATTTT
*
9564017 ATTTATTTT
1 TTTTATTTT
*
9564026 ATCTTTATTGT
1 -T-TTTATTTT
* *
9564037 ATTTATCTT
1 TTTTATTTT
* *
9564046 GTTCATCTTT
1 TTTTAT-TTT
9564056 ATTTTATTTT
1 -TTTTATTTT
*
9564066 TATTT-TCTCTA
1 T-TTTAT-T-TT
9564077 TTTTATTTT
1 TTTTATTTT
*
9564086 ATTTATTTT
1 TTTTATTTT
* * *
9564095 ATGTATAGTAT
1 -T-TTTATTTT
9564106 TTTTATTTT
1 TTTTATTTT
9564115 ATTTTATTTT
1 -TTTTATTTT
*
9564125 ATTTTA-TTC
1 -TTTTATTTT
* *
9564134 CTTTATCTTA
1 TTTTAT-TTT
9564144 TTTT-TTTT
1 TTTTATTTT
*
9564152 CTTTATCTTT
1 TTTTAT-TTT
*
9564162 ATTTCA-TTT
1 -TTTTATTTT
9564171 TTTTATTTT
1 TTTTATTTT
* *
9564180 CTTTATATT
1 TTTTATTTT
9564189 TTTTATTTT
1 TTTTATTTT
* * *
9564198 ATTCATTTA
1 TTTTATTTT
* *
9564207 CTTT-TTTA
1 TTTTATTTT
9564215 TTTTATTTT
1 TTTTATTTT
*
9564224 ATTTATTTT
1 TTTTATTTT
9564233 CGTTACCTTT
Statistics
Matches: 205, Mismatches: 56, Indels: 46
0.67 0.18 0.15
Matches are distributed among these distances:
8 20 0.10
9 96 0.47
10 56 0.27
11 33 0.16
ACGTcount: A:0.17, C:0.08, G:0.01, T:0.73
Consensus pattern (9 bp):
TTTTATTTT
Found at i:9564043 original size:15 final size:15
Alignment explanation
Indices: 9563984--9564232 Score: 122
Period size: 14 Copynumber: 17.9 Consensus size: 15
9563974 CCCTTATTAT
9563984 TCTTT-TTTATATTTA
1 TCTTTATTTAT-TTTA
*
9563999 T-TTTACTTATTTTA
1 TCTTTATTTATTTTA
9564013 T-TTTATTTATTTTA
1 TCTTTATTTATTTTA
9564027 TCTTTATTGTA-TTTA
1 TCTTTATT-TATTTTA
* *
9564042 TC-TTGTTCATCTTTA
1 TCTTTATTTAT-TTTA
9564057 T-TTTA--T-TTTTA
1 TCTTTATTTATTTTA
* *
9564068 T-TTTCTCTATTTTA
1 TCTTTATTTATTTTA
9564082 T-TTTATTTATTTTA
1 TCTTTATTTATTTTA
* * *
9564096 TGTATA-GTATTTTTA
1 TCTTTATTTA-TTTTA
9564111 T-TTTATTTTATTTTA
1 TCTTTA-TTTATTTTA
**
9564126 T-TTTA-TTCCTTTA
1 TCTTTATTTATTTTA
9564139 TC-TTATTT-TTTT-
1 TCTTTATTTATTTTA
*
9564151 TCTTTATCTTTATTTCA
1 TCTTTA--TTTATTTTA
9564168 T-TTT-TTTA-TTT-
1 TCTTTATTTATTTTA
9564179 TCTTTATATT-TTTTA
1 TCTTTAT-TTATTTTA
*
9564194 T-TTTATTCA-TTTA
1 TCTTTATTTATTTTA
9564207 -CTTT-TTTATTTTA
1 TCTTTATTTATTTTA
9564220 T-TTTATTTATTTT
1 TCTTTATTTATTTT
9564233 CGTTACCTTT
Statistics
Matches: 184, Mismatches: 20, Indels: 61
0.69 0.08 0.23
Matches are distributed among these distances:
11 9 0.05
12 11 0.06
13 38 0.21
14 68 0.37
15 47 0.26
16 10 0.05
17 1 0.01
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (15 bp):
TCTTTATTTATTTTA
Found at i:9564111 original size:69 final size:64
Alignment explanation
Indices: 9563980--9564220 Score: 173
Period size: 69 Copynumber: 3.8 Consensus size: 64
9563970 TTTCCCCTTA
* * * *
9563980 TTATTCTT-TTTTATATTTATTTTACTTATTTTATTTTATTTATTTTATCTTTATTGTATTTATC
1 TTATT-TTATTTTATTTTTATTTTACTTATTTTATTTTATTTATTTTATCTATAGTATATTTA--
9564044 TT
63 TT
* *
9564046 GTTCATCTTTATTTTATTTTTATTTT-CTCTATTTTATTTTATTTATTTTATGTATAGTATTTTT
1 -TT-AT-TTTATTTTATTTTTATTTTACT-TATTTTATTTTATTTATTTTATCTATAGTATATTT
9564110 ATT
62 ATT
* * * *
9564113 TTATTTTATTTTA-TTTTA--TTCCTTTATCTTATTTT-TTT-TCTTTATCTTTA-TTTCATTT-
1 TTATTTTATTTTATTTTTATTTTAC-TTATTTTATTTTATTTAT-TTTATCTATAGTAT-ATTTA
9564171 TT
63 TT
* *
9564173 TTATTTTCTTTATATTTTTTATTTTA-TTCA-TTTACTTT-TTTATTTTAT
1 TTATTTTATTT-TA-TTTTTATTTTACTT-ATTTTATTTTATTTATTTTAT
9564221 TTTATTTATT
Statistics
Matches: 144, Mismatches: 15, Indels: 34
0.75 0.08 0.18
Matches are distributed among these distances:
60 15 0.10
61 18 0.12
62 11 0.08
63 27 0.19
64 11 0.08
65 4 0.03
66 2 0.01
67 4 0.03
68 6 0.04
69 46 0.32
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (64 bp):
TTATTTTATTTTATTTTTATTTTACTTATTTTATTTTATTTATTTTATCTATAGTATATTTATT
Found at i:9564188 original size:24 final size:23
Alignment explanation
Indices: 9564145--9564232 Score: 68
Period size: 22 Copynumber: 4.2 Consensus size: 23
9564135 TTTATCTTAT
*
9564145 TTTTTTTCTTTATCTTTATTTCA
1 TTTTTTTATTTATCTTTATTTCA
9564168 TTTTTTTATTT-TCTTTA--T-A
1 TTTTTTTATTTATCTTTATTTCA
* *
9564187 -TTTTTTATTT-TATTCATTT-A
1 TTTTTTTATTTATCTTTATTTCA
*
9564207 CTTTTTTATTTTAT-TTTATTT-A
1 TTTTTTTA-TTTATCTTTATTTCA
9564229 TTTT
1 TTTT
9564233 CGTTACCTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
18 14 0.25
19 1 0.02
20 3 0.05
21 7 0.13
22 19 0.35
23 11 0.20
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTTTTATTTATCTTTATTTCA
Found at i:9564195 original size:103 final size:103
Alignment explanation
Indices: 9564005--9564232 Score: 263
Period size: 106 Copynumber: 2.2 Consensus size: 103
9563995 TTTATTTTAC
* *
9564005 TTATTTTATTTTATTTATTTTATCTTTATTGTATTTATCTTGTTCATCTTTATTTTATTTTTATT
1 TTATTTTATTTTATTTATTTTATCTTTATTGTATTTATCTTCTTCATCTTTATTTCATTTTTATT
*
9564070 TTCTCTATTTTATTTTATTTATTTTATGT-ATAGTA-TTT
66 TTCTCTATTATATTTTATTTATTTTAT-TCAT-GTACTTT
* * *
9564108 TTATTTTATTTTATTTTATTTTATTCCTTTATCT-TATTTTTTTTCTTTATCTTTATTTCATTTT
1 TTATTTTATTTTA-TTTATTTTA-T-CTTTAT-TGTATTTATCTTCTTCATCTTTATTTCATTTT
* *
9564172 T-TTATTTTCT-TTATA-TTT-TTTATTTTATTCATTTACTTTT
62 TATT-TTCTCTATTATATTTTATTTATTTTATTCATGTAC-TTT
9564212 TTATTTTATTTTATTTATTTT
1 TTATTTTATTTTATTTATTTT
9564233 CGTTACCTTT
Statistics
Matches: 109, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
102 3 0.03
103 33 0.30
104 28 0.26
105 7 0.06
106 37 0.34
107 1 0.01
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.74
Consensus pattern (103 bp):
TTATTTTATTTTATTTATTTTATCTTTATTGTATTTATCTTCTTCATCTTTATTTCATTTTTATT
TTCTCTATTATATTTTATTTATTTTATTCATGTACTTT
Found at i:9564918 original size:28 final size:30
Alignment explanation
Indices: 9564864--9564920 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 30
9564854 TTAAATCCTT
*
9564864 TTAATTTAAAGTTTTTTTATTTTATATTTC
1 TTAATTTAAAGTTTTTTTATTTAATATTTC
*
9564894 TTAATTT-AA-TTTTTTTCTTTAATATTT
1 TTAATTTAAAGTTTTTTTATTTAATATTT
9564921 AACACTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 16 0.64
29 2 0.08
30 7 0.28
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (30 bp):
TTAATTTAAAGTTTTTTTATTTAATATTTC
Found at i:9569412 original size:21 final size:21
Alignment explanation
Indices: 9569388--9569449 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
9569378 TCAACGCGTG
*
9569388 ATGCTCCATTGAATTCAATGC
1 ATGCTCCATTGAATTCAACGC
* *
9569409 ATGCTCAATTCAATTCAACGC
1 ATGCTCCATTGAATTCAACGC
*
9569430 ATGGTCCATTGAATTCAACG
1 ATGCTCCATTGAATTCAACG
9569450 AATGATCTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (21 bp):
ATGCTCCATTGAATTCAACGC
Found at i:9574330 original size:17 final size:17
Alignment explanation
Indices: 9574294--9574332 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
9574284 TTTTTTAAGA
*
9574294 TTTAAAAAAAATAGATT
1 TTTAAAAAAAATAGAAT
* *
9574311 TTTAAAAAATATATAAT
1 TTTAAAAAAAATAGAAT
9574328 TTTAA
1 TTTAA
9574333 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (17 bp):
TTTAAAAAAAATAGAAT
Found at i:9583706 original size:22 final size:21
Alignment explanation
Indices: 9583679--9583761 Score: 69
Period size: 23 Copynumber: 3.8 Consensus size: 21
9583669 TTTAGTGCAG
*
9583679 AGGGAATCGATACCCCCTTGA
1 AGGGAACCGATACCCCCTTGA
* *
9583700 AGGGGAACCGATTTCCCCTTTGA
1 A-GGGAACCGA-TACCCCCTTGA
* *
9583723 ATGGGAACCGATTCCCTCCTT-T
1 A-GGGAACCGATACCC-CCTTGA
*
9583745 AGGGAATCGATACCCCC
1 AGGGAACCGATACCCCC
9583762 ATGAGTTCTG
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
20 2 0.04
21 13 0.25
22 14 0.27
23 22 0.43
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (21 bp):
AGGGAACCGATACCCCCTTGA
Found at i:9583722 original size:23 final size:23
Alignment explanation
Indices: 9583680--9583744 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
9583670 TTAGTGCAGA
* *
9583680 GGGAATCGATACCCCC-TTGAAG
1 GGGAACCGATTCCCCCTTTGAAG
* *
9583702 GGGAACCGATTTCCCCTTTGAAT
1 GGGAACCGATTCCCCCTTTGAAG
9583725 GGGAACCGATTCCCTCCTTT
1 GGGAACCGATTCCC-CCTTT
9583745 AGGGAATCGA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
22 13 0.36
23 18 0.50
24 5 0.14
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (23 bp):
GGGAACCGATTCCCCCTTTGAAG
Found at i:9583749 original size:21 final size:22
Alignment explanation
Indices: 9583680--9583761 Score: 69
Period size: 22 Copynumber: 3.7 Consensus size: 22
9583670 TTAGTGCAGA
* * * *
9583680 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTTAAT
*
9583702 GGGAACCGATTTCCCCTTTGAAT
1 GGGAACCGATTCCCCCTTT-AAT
9583725 GGGAACCGATTCCCTCCTTT-A-
1 GGGAACCGATTCCC-CCTTTAAT
* *
9583746 GGGAATCGATACCCCC
1 GGGAACCGATTCCCCC
9583762 ATGAGTTCTG
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
20 2 0.04
21 12 0.24
22 16 0.32
23 15 0.30
24 5 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTTAAT
Found at i:9593264 original size:24 final size:24
Alignment explanation
Indices: 9593231--9593283 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
9593221 CATTAAAATG
* * *
9593231 ATAAATGAACAGAAATGAACGAAC
1 ATAAACGAACACAAACGAACGAAC
*
9593255 GTAAACGAACACAAACGAACGAAC
1 ATAAACGAACACAAACGAACGAAC
9593279 ATAAA
1 ATAAA
9593284 ATTAATTGGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.09
Consensus pattern (24 bp):
ATAAACGAACACAAACGAACGAAC
Found at i:9593398 original size:16 final size:16
Alignment explanation
Indices: 9593377--9593415 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
9593367 TTTTATTTGT
9593377 GTTTAAA-ATTAACTGG
1 GTTTAAATATTAA-TGG
9593393 GTTTAAAATATTAATGG
1 GTTT-AAATATTAATGG
9593410 GTTTAA
1 GTTTAA
9593416 GCTTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.29
17 10 0.48
18 5 0.24
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (16 bp):
GTTTAAATATTAATGG
Found at i:9600710 original size:7 final size:7
Alignment explanation
Indices: 9600688--9600788 Score: 50
Period size: 7 Copynumber: 14.3 Consensus size: 7
9600678 AATTATGTGA
9600688 TAGTGTT
1 TAGTGTT
9600695 TA-TGATT
1 TAGTG-TT
9600702 TAGTGTT
1 TAGTGTT
*
9600709 TAGGGTT
1 TAGTGTT
9600716 TA-TGGTT
1 TAGT-GTT
9600723 TA-TGGTT
1 TAGT-GTT
9600730 TA-TGGTT
1 TAGT-GTT
*
9600737 TAGGGTT
1 TAGTGTT
*
9600744 TAGGGTTT
1 TAGTG-TT
9600752 TA-TAGTT
1 TAGT-GTT
*
9600759 TAATGTT
1 TAGTGTT
*
9600766 TAGGGTT
1 TAGTGTT
*
9600773 TAGGGTT
1 TAGTGTT
*
9600780 TAGGGTT
1 TAGTGTT
9600787 TA
1 TA
9600789 AGTTATGCAT
Statistics
Matches: 81, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
6 2 0.02
7 71 0.88
8 8 0.10
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (7 bp):
TAGTGTT
Found at i:9600716 original size:21 final size:21
Alignment explanation
Indices: 9600700--9600788 Score: 97
Period size: 21 Copynumber: 4.2 Consensus size: 21
9600690 GTGTTTATGA
* * *
9600700 TTTAGTGTTTAGGGTTTATGG
1 TTTAGGGTTTATGGTTTAGGG
*
9600721 TTTATGGTTTATGGTTTAGGG
1 TTTAGGGTTTATGGTTTAGGG
* **
9600742 TTTAGGGTTTTATAGTTTAATG
1 TTTAGGG-TTTATGGTTTAGGG
*
9600764 TTTAGGGTTTAGGGTTTAGGG
1 TTTAGGGTTTATGGTTTAGGG
9600785 TTTA
1 TTTA
9600789 AGTTATGCAT
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
21 37 0.67
22 18 0.33
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.52
Consensus pattern (21 bp):
TTTAGGGTTTATGGTTTAGGG
Found at i:9600717 original size:14 final size:14
Alignment explanation
Indices: 9600688--9600788 Score: 89
Period size: 14 Copynumber: 7.1 Consensus size: 14
9600678 AATTATGTGA
* *
9600688 TAGTGTTTATGATT
1 TAGTGTTTAGGGTT
9600702 TAGTGTTTAGGGTT
1 TAGTGTTTAGGGTT
*
9600716 TA-TGGTTTATGGTT
1 TAGT-GTTTAGGGTT
9600730 TA-TGGTTTAGGGTT
1 TAGT-GTTTAGGGTT
* **
9600744 TAGGGTTTTATAGTT
1 TAGTG-TTTAGGGTT
*
9600759 TAATGTTTAGGGTT
1 TAGTGTTTAGGGTT
*
9600773 TAGGGTTTAGGGTT
1 TAGTGTTTAGGGTT
9600787 TA
1 TA
9600789 AGTTATGCAT
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
13 1 0.01
14 60 0.85
15 10 0.14
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (14 bp):
TAGTGTTTAGGGTT
Found at i:9600766 original size:29 final size:29
Alignment explanation
Indices: 9600700--9600780 Score: 112
Period size: 29 Copynumber: 2.8 Consensus size: 29
9600690 GTGTTTATGA
* * *
9600700 TTTAGTGTTTAGGGTTTATGG-TTTATGG
1 TTTAATGTTTAGGGTTTAGGGTTTTATAG
9600728 TTT-ATGGTTTAGGGTTTAGGGTTTTATAG
1 TTTAAT-GTTTAGGGTTTAGGGTTTTATAG
9600757 TTTAATGTTTAGGGTTTAGGGTTT
1 TTTAATGTTTAGGGTTTAGGGTTT
9600781 AGGGTTTAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
27 1 0.02
28 17 0.36
29 27 0.57
30 2 0.04
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (29 bp):
TTTAATGTTTAGGGTTTAGGGTTTTATAG
Found at i:9601208 original size:16 final size:18
Alignment explanation
Indices: 9601182--9601214 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9601172 AATTAAAATT
9601182 ACAAGACAC-AATTGAAA
1 ACAAGACACAAATTGAAA
9601199 ACAA-ACACAAATTGAA
1 ACAAGACACAAATTGAA
9601215 GGAACACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.61, C:0.18, G:0.09, T:0.12
Consensus pattern (18 bp):
ACAAGACACAAATTGAAA
Found at i:9604246 original size:23 final size:23
Alignment explanation
Indices: 9604215--9604287 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
9604205 ATAGGTAAAA
* *
9604215 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGCTT
*
9604238 ATATAATGTAATAGGTAGTGTTT
1 ATATAATGTAATAGGTAGTGCTT
9604261 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGCTT
9604284 ATAT
1 ATAT
9604288 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:9606461 original size:62 final size:62
Alignment explanation
Indices: 9606328--9606462 Score: 207
Period size: 62 Copynumber: 2.2 Consensus size: 62
9606318 TAATATAGAA
** * * *
9606328 ATATAAAAAAATAATTAGTCATAAAATAATAAAAAATTATTTATAAGGATTAAAATATTAAT
1 ATATAAAAATTTAATTAGTCATAAAATAACAAAAAATTATTTACAAGGATTAAAATATTAAC
* *
9606390 ATATAAAAATTTAATTATTCATAAAATAACAAAAAATTATTTACAATGATTAAAATATTAAC
1 ATATAAAAATTTAATTAGTCATAAAATAACAAAAAATTATTTACAAGGATTAAAATATTAAC
9606452 ATATAAAAATT
1 ATATAAAAATT
9606463 CGAGTTTTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 66 1.00
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.35
Consensus pattern (62 bp):
ATATAAAAATTTAATTAGTCATAAAATAACAAAAAATTATTTACAAGGATTAAAATATTAAC
Found at i:9607156 original size:5 final size:5
Alignment explanation
Indices: 9607148--9607194 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
9607138 CAAAAAAACC
* * *
9607148 AATAA AAT-A AATAA AACAA AGTAA AATAA CATAGA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATA-A AATAA AATAA AA
9607195 AAATAAATCA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
4 4 0.12
5 26 0.76
6 4 0.12
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:9607191 original size:31 final size:30
Alignment explanation
Indices: 9607106--9607201 Score: 85
Period size: 31 Copynumber: 3.2 Consensus size: 30
9607096 TAAAAACTAA
**
9607106 AAAT-AAATAACAT-GAAATAAAGCAAAAC
1 AAATAAAATAACATAGAAATAAAATAAAAC
* *
9607134 AAAACAAAAAAACCAATA-AAAT-AAATAAAAC
1 -AAATAAAATAA-C-ATAGAAATAAAATAAAAC
9607165 AAAGTAAAATAACATAGAAATAAAATAAAA-
1 AAA-TAAAATAACATAGAAATAAAATAAAAC
9607195 AAATAAA
1 AAATAAA
9607202 TCAAATAAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
29 10 0.19
30 16 0.30
31 22 0.41
32 6 0.11
ACGTcount: A:0.74, C:0.08, G:0.04, T:0.14
Consensus pattern (30 bp):
AAATAAAATAACATAGAAATAAAATAAAAC
Found at i:9607258 original size:23 final size:20
Alignment explanation
Indices: 9607232--9607290 Score: 55
Period size: 23 Copynumber: 2.8 Consensus size: 20
9607222 AGAAAAACAC
9607232 AAAAATAAAAATAAAATAAGTAT
1 AAAAA-AAAAATAAAAT-A-TAT
* *
9607255 AAAAACAAAACTACAATATAT
1 AAAAA-AAAAATAAAATATAT
*
9607276 AAAAAAAAAAGAAAA
1 AAAAAAAAAATAAAA
9607291 AAAGAAAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 7 0.23
21 8 0.27
22 1 0.03
23 14 0.47
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.15
Consensus pattern (20 bp):
AAAAAAAAAATAAAATATAT
Found at i:9607365 original size:2 final size:2
Alignment explanation
Indices: 9607358--9607406 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
9607348 AACAAAAAGA
9607358 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9607400 AT AT AT A
1 AT AT AT A
9607407 GTAATAATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9608561 original size:20 final size:21
Alignment explanation
Indices: 9608515--9608561 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
9608505 ATGAAATAAA
* *
9608515 TAATATATATATATATATATT
1 TAATATATATATATAAATATG
9608536 TAATATA-ATATATAAATATG
1 TAATATATATATATAAATATG
*
9608556 TGATAT
1 TAATAT
9608562 GTGATACATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (21 bp):
TAATATATATATATAAATATG
Found at i:9610261 original size:7 final size:7
Alignment explanation
Indices: 9610249--9610292 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
9610239 CCTTATTTTC
9610249 TTTTCTT
1 TTTTCTT
9610256 TTTTCTT
1 TTTTCTT
9610263 TTTT-TT
1 TTTTCTT
*
9610269 CTTT-TT
1 TTTTCTT
9610275 TTTTC-T
1 TTTTCTT
9610281 TTTTCTT
1 TTTTCTT
9610288 TTTTC
1 TTTTC
9610293 AATTTAGGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 16 0.48
7 17 0.52
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTCTT
Found at i:9610264 original size:6 final size:6
Alignment explanation
Indices: 9610244--9610290 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
9610234 ACCCACCTTA
* *
9610244 TTTTC- TTTTCTT TTTTCT TTTTTT TCTTTTT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTC-T TTTTCT TTTTCT T-TTTCT TTTTCT TTTTCT TTTT
9610291 TCAATTTAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
5 5 0.14
6 21 0.57
7 11 0.30
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (6 bp):
TTTTCT
Found at i:9610267 original size:10 final size:10
Alignment explanation
Indices: 9610244--9610289 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
9610234 ACCCACCTTA
9610244 TTTTCTTTTCT
1 TTTTCTTTT-T
9610255 TTTT-TCTTTT
1 TTTTCT-TTTT
9610265 TTTTCTTTTT
1 TTTTCTTTTT
9610275 TTTTCTTTTT
1 TTTTCTTTTT
9610285 CTTTT
1 -TTTT
9610290 TTCAATTTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
10 20 0.62
11 12 0.38
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:9610268 original size:9 final size:9
Alignment explanation
Indices: 9610254--9610284 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
9610244 TTTTCTTTTC
9610254 TTTTTTCTT
1 TTTTTTCTT
9610263 TTTTTTCTTT
1 TTTTTTC-TT
9610273 TTTTTTCTT
1 TTTTTTCTT
9610282 TTT
1 TTT
9610285 CTTTTTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:9610270 original size:16 final size:16
Alignment explanation
Indices: 9610244--9610292 Score: 73
Period size: 16 Copynumber: 3.0 Consensus size: 16
9610234 ACCCACCTTA
9610244 TTTTCTTTTCTTTTTTC
1 TTTT-TTTTCTTTTTTC
9610261 TTTTTTTTCTTTTTT-
1 TTTTTTTTCTTTTTTC
9610276 TTTCTTTTTCTTTTTTC
1 TTT-TTTTTCTTTTTTC
9610293 AATTTAGGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.10
16 23 0.77
17 4 0.13
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (16 bp):
TTTTTTTTCTTTTTTC
Found at i:9610389 original size:74 final size:75
Alignment explanation
Indices: 9610254--9610393 Score: 176
Period size: 75 Copynumber: 1.9 Consensus size: 75
9610244 TTTTCTTTTC
* * * * * * * *
9610254 TTTTTTCTTTTTTTTCTTTTTTTTTCTTTTTCTTTTTTCAATTTAGGGCGCCTTTTTGGGTTTTC
1 TTTTTTCTCTTTTTTATTTTTTTTTCTCTTTCTTTTTTCAACTTAGGACGCCCTCTCGGGTTTTC
9610319 ACCATAAATA
66 ACCATAAATA
*
9610329 TTTTTTCTCTTTTTTATTTTTATTTT-TCTTTCTTTTTT-GACTTAGGACGCCCTCTCGGGTTTT
1 TTTTTTCTCTTTTTTATTTTT-TTTTCTCTTTCTTTTTTCAACTTAGGACGCCCTCTCGGGTTTT
9610392 CA
65 CA
9610394 TCCTAAGTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
74 21 0.38
75 30 0.55
76 4 0.07
ACGTcount: A:0.11, C:0.16, G:0.10, T:0.63
Consensus pattern (75 bp):
TTTTTTCTCTTTTTTATTTTTTTTTCTCTTTCTTTTTTCAACTTAGGACGCCCTCTCGGGTTTTC
ACCATAAATA
Found at i:9617481 original size:17 final size:17
Alignment explanation
Indices: 9617459--9617495 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
9617449 CAGTTCATTA
*
9617459 TTCACACCTTTAAATTC
1 TTCACAACTTTAAATTC
9617476 TTCACAACTTTAAATTC
1 TTCACAACTTTAAATTC
9617493 TTC
1 TTC
9617496 CCTTTCTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (17 bp):
TTCACAACTTTAAATTC
Found at i:9620062 original size:12 final size:13
Alignment explanation
Indices: 9620021--9620071 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
9620011 ATATAAACCC
*
9620021 TAAAAACAAAAAA
1 TAAAAACAAAACA
*
9620034 TAAATAACATGAA-A
1 TAAA-AACA-AAACA
9620048 T-AAAACAAAACA
1 TAAAAACAAAACA
9620060 TAAAAACAAAAC
1 TAAAAACAAAAC
9620072 CAATAAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
11 2 0.06
12 6 0.19
13 16 0.50
14 6 0.19
15 2 0.06
ACGTcount: A:0.75, C:0.12, G:0.02, T:0.12
Consensus pattern (13 bp):
TAAAAACAAAACA
Found at i:9620081 original size:5 final size:5
Alignment explanation
Indices: 9620073--9620119 Score: 60
Period size: 5 Copynumber: 9.4 Consensus size: 5
9620063 AAACAAAACC
* *
9620073 AATAA AAT-A AATAA AACAA AGTAA AATAA AATAGA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATA-A AATAA AATAA AA
9620120 AAGGTTAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
4 4 0.11
5 27 0.75
6 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:9620099 original size:19 final size:18
Alignment explanation
Indices: 9620030--9620102 Score: 60
Period size: 18 Copynumber: 3.9 Consensus size: 18
9620020 CTAAAAACAA
* *
9620030 AAAATAAATAACATGAAAT
1 AAAACAAATAAAAT-AAAT
*
9620049 AAAACAAA-ACATAA-AAAC
1 AAAACAAATA-A-AATAAAT
*
9620067 AAAACCAATAAAATAAAT
1 AAAACAAATAAAATAAAT
9620085 AAAACAAAGTAAAATAAA
1 AAAACAAA-TAAAATAAA
9620103 ATAGAAATAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
17 2 0.05
18 22 0.51
19 18 0.42
20 1 0.02
ACGTcount: A:0.74, C:0.10, G:0.03, T:0.14
Consensus pattern (18 bp):
AAAACAAATAAAATAAAT
Found at i:9620484 original size:20 final size:20
Alignment explanation
Indices: 9620461--9620846 Score: 114
Period size: 20 Copynumber: 19.1 Consensus size: 20
9620451 AATCAAAACT
9620461 CGAATATGAAAATCGCAACG
1 CGAATATGAAAATCGCAACG
*
9620481 CGAACAT-ATAAATCGCAACG
1 CGAATATGA-AAATCGCAACG
* * *** *
9620501 CGATTCTGACTGTCGCAACA
1 CGAATATGAAAATCGCAACG
* * **
9620521 AGTATCCGTAAAATCGCAACG
1 CGAATATG-AAAATCGCAACG
* ** *
9620542 CGTATCCGTAAATCGCAACG
1 CGAATATGAAAATCGCAACG
*
9620562 AC-AATACGTAAAATCGCAACG
1 -CGAATATG-AAAATCGCAACG
* * *
9620583 CGTATCCT-TAAATCGCAACG
1 CGAAT-ATGAAAATCGCAACG
* * *
9620603 AGAATACGTAAATCGCAACG
1 CGAATATGAAAATCGCAACG
* * *
9620623 CGTATCTGTAAATCGCAACG
1 CGAATATGAAAATCGCAACG
* * * *
9620643 AGAATACGTAAATCGCAATG
1 CGAATATGAAAATCGCAACG
* ** *
9620663 CGTATCCGTAAATCGCAACG
1 CGAATATGAAAATCGCAACG
*
9620683 AC-AATACGTAAAATCGCAACG
1 -CGAATATG-AAAATCGCAACG
*
9620704 CG--TATCCATAAATCGCAACG
1 CGAATAT-GA-AAATCGCAACG
* **
9620724 CG-ATTTTTAAATCGCAACG
1 CGAATATGAAAATCGCAACG
** *
9620743 AAAATACGTAAAATCGCAACG
1 CGAATATG-AAAATCGCAACG
*
9620764 CG--TATCCATAAATCGCAACG
1 CGAATAT-GA-AAATCGCAACG
* **
9620784 CG-ATTTTTAAATCGCAACG
1 CGAATATGAAAATCGCAACG
*
9620803 AC-AATACGTAAAATCGCAACG
1 -CGAATATG-AAAATCGCAACG
*
9620824 CG--TATCCATAAATCGCAACG
1 CGAATAT-GA-AAATCGCAACG
9620844 CGA
1 CGA
9620847 TTTTTAAAGC
Statistics
Matches: 271, Mismatches: 69, Indels: 51
0.69 0.18 0.13
Matches are distributed among these distances:
19 32 0.12
20 171 0.63
21 68 0.25
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (20 bp):
CGAATATGAAAATCGCAACG
Found at i:9620627 original size:40 final size:41
Alignment explanation
Indices: 9620513--9620843 Score: 361
Period size: 41 Copynumber: 8.2 Consensus size: 41
9620503 ATTCTGACTG
* * * *
9620513 TCGCAACAAGTATCCGTAAAATCGCAACGCGTATCCGTAAA
1 TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCTTAAA
*
9620554 TCGCAACGACAATACGTAAAATCGCAACGCGTATCCTTAAA
1 TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCTTAAA
9620595 TCGCAACGAGAATACGT-AAATCGCAACGCGTAT-CTGTAAA
1 TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCT-TAAA
* *
9620635 TCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTAAA
1 TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCTTAAA
* *
9620675 TCGCAACGACAATACGTAAAATCGCAACGCGTATCCATAAA
1 TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCTTAAA
* ** * *** * *
9620716 TCGCAACGCG-AT-TTTTAAATCGCAACGAAAATACGTAAAA
1 TCGCAACGAGAATACGTAAAATCGCAACGCGTAT-CCTTAAA
* * * * **
9620756 TCGCAACGCGTATCCAT-AAATCGCAACGCG-ATTTTTAAA
1 TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCTTAAA
* *
9620795 TCGCAACGACAATACGTAAAATCGCAACGCGTATCCATAAA
1 TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCTTAAA
9620836 TCGCAACG
1 TCGCAACG
9620844 CGATTTTTAA
Statistics
Matches: 245, Mismatches: 37, Indels: 16
0.82 0.12 0.05
Matches are distributed among these distances:
39 32 0.13
40 103 0.42
41 109 0.44
42 1 0.00
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (41 bp):
TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCTTAAA
Found at i:9620758 original size:21 final size:21
Alignment explanation
Indices: 9620527--9620823 Score: 164
Period size: 20 Copynumber: 14.7 Consensus size: 21
9620517 AACAAGTATC
* *
9620527 CGTAAAATCGCAACG-CGTATC
1 CGTAAAATCGCAACGAC-AATA
9620548 CGT-AAATCGCAACGACAATA
1 CGTAAAATCGCAACGACAATA
*
9620568 CGTAAAATCGCAACG-C-GTA
1 CGTAAAATCGCAACGACAATA
* * *
9620587 TCCTTAAATCGCAACGAGAATA
1 -CGTAAAATCGCAACGACAATA
*
9620609 CGT-AAATCGCAACG-C-GTA
1 CGTAAAATCGCAACGACAATA
*
9620627 TCTGT-AAATCGCAACGAGAATA
1 -C-GTAAAATCGCAACGACAATA
* * *
9620649 CGT-AAATCGCAATG-CGTATC
1 CGTAAAATCGCAACGAC-AATA
9620669 CGT-AAATCGCAACGACAATA
1 CGTAAAATCGCAACGACAATA
* *
9620689 CGTAAAATCGCAACG-CGTATC
1 CGTAAAATCGCAACGAC-AATA
* *
9620710 CAT-AAATCGCAACG-CGAT-
1 CGTAAAATCGCAACGACAATA
** * *
9620728 TTTTAAATCGCAACGAAAATA
1 CGTAAAATCGCAACGACAATA
* *
9620749 CGTAAAATCGCAACG-CGTATC
1 CGTAAAATCGCAACGAC-AATA
* *
9620770 CAT-AAATCGCAACG-CGAT-
1 CGTAAAATCGCAACGACAATA
** *
9620788 TTTTAAATCGCAACGACAATA
1 CGTAAAATCGCAACGACAATA
9620809 CGTAAAATCGCAACG
1 CGTAAAATCGCAACG
9620824 CGTATCCATA
Statistics
Matches: 215, Mismatches: 41, Indels: 40
0.73 0.14 0.14
Matches are distributed among these distances:
18 4 0.02
19 29 0.13
20 116 0.54
21 62 0.29
22 4 0.02
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.20
Consensus pattern (21 bp):
CGTAAAATCGCAACGACAATA
Found at i:9620854 original size:60 final size:61
Alignment explanation
Indices: 9620513--9620845 Score: 424
Period size: 60 Copynumber: 5.5 Consensus size: 61
9620503 ATTCTGACTG
** * *
9620513 TCGCAACAAGTATCCGTAAAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAA
1 TCGCAACGCGTATCCAT-AAATCGCAACGCGTATTCGTAAATCGCAACGACAATACGTAAAA
* * * * *
9620575 TCGCAACGCGTATCCTTAAATCGCAACGAGAATACGTAAATCGCAACG-C-GTATCTGT-AAA
1 TCGCAACGCGTATCCATAAATCGCAACGCGTATTCGTAAATCGCAACGACAATA-C-GTAAAA
* * * * * *
9620635 TCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTAAATCGCAACGACAATACGTAAAA
1 TCGCAACGCGTATCCATAAATCGCAACGCGTATTCGTAAATCGCAACGACAATACGTAAAA
** *
9620696 TCGCAACGCGTATCCATAAATCGCAACGCG-ATTTTTAAATCGCAACGAAAATACGTAAAA
1 TCGCAACGCGTATCCATAAATCGCAACGCGTATTCGTAAATCGCAACGACAATACGTAAAA
**
9620756 TCGCAACGCGTATCCATAAATCGCAACGCG-ATTTTTAAATCGCAACGACAATACGTAAAA
1 TCGCAACGCGTATCCATAAATCGCAACGCGTATTCGTAAATCGCAACGACAATACGTAAAA
9620816 TCGCAACGCGTATCCATAAATCGCAACGCG
1 TCGCAACGCGTATCCATAAATCGCAACGCG
9620846 ATTTTTAAAG
Statistics
Matches: 240, Mismatches: 26, Indels: 12
0.86 0.09 0.04
Matches are distributed among these distances:
59 2 0.01
60 162 0.68
61 60 0.25
62 16 0.07
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (61 bp):
TCGCAACGCGTATCCATAAATCGCAACGCGTATTCGTAAATCGCAACGACAATACGTAAAA
Found at i:9621145 original size:20 final size:20
Alignment explanation
Indices: 9621120--9621395 Score: 113
Period size: 20 Copynumber: 13.7 Consensus size: 20
9621110 GATTTTCCAT
*
9621120 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCTGAA
*
9621140 AATCGCAATGCGAA-CAT-ATA
1 AATCGCAACGCGAATC-TGA-A
* *
9621160 AATCGCAACGCGATTCTGAC
1 AATCGCAACGCGAATCTGAA
* * * *
9621180 TATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGAATCTG-AA
* * *
9621201 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCTGAA
9621221 AATCGCAACGAC-AATAC-GTAA
1 AATCGCAACG-CGAAT-CTG-AA
* *
9621242 AATCGCAACGCGTATCCT-TA
1 AATCGCAACGCGAAT-CTGAA
* *
9621262 AATCGCAACGAGAATAC-GTA
1 AATCGCAACGCGAAT-CTGAA
*
9621282 AATCGCAACGCGTATCT-ATA
1 AATCGCAACGCGAATCTGA-A
** *
9621302 AATCGCAACGATAATAC-GTA
1 AATCGCAACGCGAAT-CTGAA
* * * * *
9621322 AATCGTAATGCGTATCCGTA
1 AATCGCAACGCGAATCTGAA
9621342 AATCGCAACGAC-AATAC-GTAA
1 AATCGCAACG-CGAAT-CTG-AA
* * *
9621363 AATCGCAATGCGTATCTGTA
1 AATCGCAACGCGAATCTGAA
*
9621383 AATCGTAACGCGA
1 AATCGCAACGCGA
9621396 TTTTAAAAGC
Statistics
Matches: 191, Mismatches: 44, Indels: 42
0.69 0.16 0.15
Matches are distributed among these distances:
19 3 0.02
20 137 0.72
21 51 0.27
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.21
Consensus pattern (20 bp):
AATCGCAACGCGAATCTGAA
Found at i:9621212 original size:41 final size:40
Alignment explanation
Indices: 9621120--9621392 Score: 202
Period size: 40 Copynumber: 6.7 Consensus size: 40
9621110 GATTTTCCAT
* * * * *
9621120 AATCGCAACGCGAATATGAAAATCGCAATGCG-A-ACATATA
1 AATCGCAACGCGATTCTG-AAATCGCAACGAGAATACGTA-A
* * *
9621160 AATCGCAACGCGATTCTGACTATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGATTCTGA-AATCGCAACGAGAATACGTAA
* *
9621201 AATCGCAACGCG-TATCCGTAAATCGCAACGACAATACGTAA
1 AATCGCAACGCGAT-TCTG-AAATCGCAACGAGAATACGTAA
* *
9621242 AATCGCAACGCGTATCCTTAAATCGCAACGAGAATACGT-A
1 AATCGCAACGCG-ATTCTGAAATCGCAACGAGAATACGTAA
* *
9621282 AATCGCAACGCG-TATCTATAAATCGCAACGATAATACGT-A
1 AATCGCAACGCGAT-TCT-GAAATCGCAACGAGAATACGTAA
* * * *
9621322 AATCGTAATGCG-TATCCGTAAATCGCAACGACAATACGTAA
1 AATCGCAACGCGAT-TCTG-AAATCGCAACGAGAATACGTAA
* *
9621363 AATCGCAATGCG-TATCTGTAAATCGTAACG
1 AATCGCAACGCGAT-TCTG-AAATCGCAACG
9621393 CGATTTTAAA
Statistics
Matches: 196, Mismatches: 26, Indels: 21
0.81 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 93 0.47
41 93 0.47
42 5 0.03
43 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (40 bp):
AATCGCAACGCGATTCTGAAATCGCAACGAGAATACGTAA
Found at i:9621296 original size:40 final size:41
Alignment explanation
Indices: 9621159--9621392 Score: 280
Period size: 41 Copynumber: 5.8 Consensus size: 41
9621149 GCGAACATAT
* * * ** *
9621159 AAATCGCAACGCG-ATTCTGACTATCGCAACGAGTATCCGTA
1 AAATCGCAACGCGTATCCTTA-AATCGCAACGACAATACGTA
*
9621200 AAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTA
1 AAATCGCAACGCGTATCCTTAAATCGCAACGACAATACGTA
*
9621241 AAATCGCAACGCGTATCCTTAAATCGCAACGAGAATACGT-
1 AAATCGCAACGCGTATCCTTAAATCGCAACGACAATACGTA
*
9621281 AAATCGCAACGCGTAT-CTATAAATCGCAACGATAATACGT-
1 AAATCGCAACGCGTATCCT-TAAATCGCAACGACAATACGTA
* * *
9621321 AAATCGTAATGCGTATCCGTAAATCGCAACGACAATACGTA
1 AAATCGCAACGCGTATCCTTAAATCGCAACGACAATACGTA
* *
9621362 AAATCGCAATGCGTAT-CTGTAAATCGTAACG
1 AAATCGCAACGCGTATCCT-TAAATCGCAACG
9621393 CGATTTTAAA
Statistics
Matches: 171, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 2 0.01
40 71 0.42
41 94 0.55
42 4 0.02
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (41 bp):
AAATCGCAACGCGTATCCTTAAATCGCAACGACAATACGTA
Found at i:9621630 original size:21 final size:20
Alignment explanation
Indices: 9621606--9621738 Score: 99
Period size: 21 Copynumber: 6.5 Consensus size: 20
9621596 CAGTTCCCAG
9621606 AATCGCAACGCGATTATGAA
1 AATCGCAACGCGATTATGAA
* *
9621626 GAATCGCAATGCGA-TAGTACAA
1 -AATCGCAACGCGATTA-T-GAA
* * * *
9621648 AATCGCAATGCGATTTTCCAT
1 AATCGCAACGCGATTAT-GAA
*
9621669 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGATTATGAA
**
9621689 AATCGCAACGCGAACAT-ATA
1 AATCGCAACGCGATTATGA-A
* *
9621709 AATCGCAACGCGATTCTGAC
1 AATCGCAACGCGATTATGAA
*
9621729 TATCGCAACG
1 AATCGCAACG
9621739 AGTATCCGTA
Statistics
Matches: 91, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
19 1 0.01
20 43 0.47
21 44 0.48
22 3 0.03
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGATTATGAA
Found at i:9621689 original size:549 final size:549
Alignment explanation
Indices: 9620592--9622011 Score: 2280
Period size: 549 Copynumber: 2.6 Consensus size: 549
9620582 GCGTATCCTT
* * ** * * *
9620592 AAATCGCAACGAGAATACGTAAATCGCAACGCG-TATCTGTA-AATCGCAACGAGAATACGT-AA
1 AAATCGCAACGCGAACATATAAATCGCAACGCGAT-TCTG-ACTATCGCAACGAGTATCCGTAAA
*
9620654 ATCGCAATGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCATAAATCG
64 ATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCATAAATCG
* *** *** * * * *
9620719 CAACGCG-ATTTTTAAATCGCAACGAAAATACGTA-AAATCGCAACGCGT-ATCCATAAATCGCA
129 CAACGAGAATACGTAAATCGCAACGCGTAT-C-TATAAATCGCAACG-ATAATACGTAAATCGTA
* *** **
9620781 ACGCG-ATTTTTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCATAAATCGCAACGC
191 ATGCGTATCCATAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCTGTAAATCGCAACGC
* *
9620845 GATTTTTAAAGCGCCATTATAATCACTACGTGTATTTTATTTTCAAATTCCAAACACGAATATTA
256 GATTTTTAAAGCGCCATTATAATCGCTACGCGTATTTTATTTTCAAATTCCAAACACGAATATTA
*
9620910 ATTAGAGAAAATAACCTCAGTGACCAAAAATGCCTTATAATATACGATTTTAACCAACTTTTTTT
321 ATTAGAGAAAATAACCTCAGTAACCAAAAATGCCTTATAATATACGATTTTAACCAACTTTTTTT
9620975 GGATTTGCCAAAATGACCAACTAAATCGCAATGCGATCGATAATTCGCAACGCGATCTCTAGAAT
386 GGATTTGCCAAAATGACCAACTAAATCGCAATGCGATCGATAATTCGCAACGCGATCTCTAGAAT
* * *
9621040 CGCAAATCAGTTCCCAGAATTGCAACGCGATTATGAAGAATTGCAATGCGATAGTACAAATTCGC
451 CGCAAATCAGTTCCCAGAATCGCAACGCGATTATGAAGAATCGCAATGCGATAGTACAAAATCGC
*
9621105 ATTGCGATTTTCCATAATCGCAACGCGAATATGA
516 AATGCGATTTTCCATAATCGCAACGCGAATATGA
*
9621139 AAATCGCAATGCGAACATATAAATCGCAACGCGATTCTGACTATCGCAACGAGTATCCGTAAAAT
1 AAATCGCAACGCGAACATATAAATCGCAACGCGATTCTGACTATCGCAACGAGTATCCGTAAAAT
*
9621204 CGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCTTAAATCGCA
66 CGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCATAAATCGCA
9621269 ACGAGAATACGTAAATCGCAACGCGTATCTATAAATCGCAACGATAATACGTAAATCGTAATGCG
131 ACGAGAATACGTAAATCGCAACGCGTATCTATAAATCGCAACGATAATACGTAAATCGTAATGCG
* * *
9621334 TATCCGTAAATCGCAACGACAATACGTAAAATCGCAATGCGTATCTGTAAATCGTAACGCGATTT
196 TATCCATAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCTGTAAATCGCAACGCGATTT
*
9621399 TAAAAGCGCCATTATAATCGCTACGCGTATTTTATTTTCAAATTCCAAACACGAATATTAATTAG
261 TTAAAGCGCCATTATAATCGCTACGCGTATTTTATTTTCAAATTCCAAACACGAATATTAATTAG
* *
9621464 CGAAAATAACCTCAGTAACCAAAAATGCCTTATAATATACGATTTTAACCATCTTTTTTTGGATT
326 AGAAAATAACCTCAGTAACCAAAAATGCCTTATAATATACGATTTTAACCAACTTTTTTTGGATT
*
9621529 TGCCAAAATGACCAACTAAATCGCAATGCGATCGATAATTCGCAACGCGATCTCTAGAATCGTAA
391 TGCCAAAATGACCAACTAAATCGCAATGCGATCGATAATTCGCAACGCGATCTCTAGAATCGCAA
9621594 ATCAGTTCCCAGAATCGCAACGCGATTATGAAGAATCGCAATGCGATAGTACAAAATCGCAATGC
456 ATCAGTTCCCAGAATCGCAACGCGATTATGAAGAATCGCAATGCGATAGTACAAAATCGCAATGC
9621659 GATTTTCCATAATCGCAACGCGAATATGA
521 GATTTTCCATAATCGCAACGCGAATATGA
9621688 AAATCGCAACGCGAACATATAAATCGCAACGCGATTCTGACTATCGCAACGAGTATCCGTAAAAT
1 AAATCGCAACGCGAACATATAAATCGCAACGCGATTCTGACTATCGCAACGAGTATCCGTAAAAT
* * * *
9621753 CGTAACGCGTATCCGTAAATCGTAACGATAATACGTAAAATCGCAACGCGTATCCGTAAATCGCA
66 CGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCATAAATCGCA
* * * *
9621818 ATGAGAATACGCAAATCACAACGCGTATCTATAAATCGCAACGAGAATACGTAAATCGTAATGCG
131 ACGAGAATACGTAAATCGCAACGCGTATCTATAAATCGCAACGATAATACGTAAATCGTAATGCG
*
9621883 TATCCATAAATCGCAACGACAATACGTAAAATCACAACGCGTAT-TCGTAAATCGCAACGCGATT
196 TATCCATAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCT-GTAAATCGCAACGCGATT
9621947 TTTAAAGCGCCATTATAATCGCTACGCGTATTTTATTTTCAAATTCCAAACACGAATATTAATTA
260 TTTAAAGCGCCATTATAATCGCTACGCGTATTTTATTTTCAAATTCCAAACACGAATATTAATTA
9622012 TCGGAACACT
Statistics
Matches: 811, Mismatches: 54, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
546 1 0.00
547 51 0.06
548 100 0.12
549 659 0.81
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (549 bp):
AAATCGCAACGCGAACATATAAATCGCAACGCGATTCTGACTATCGCAACGAGTATCCGTAAAAT
CGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCATAAATCGCA
ACGAGAATACGTAAATCGCAACGCGTATCTATAAATCGCAACGATAATACGTAAATCGTAATGCG
TATCCATAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCTGTAAATCGCAACGCGATTT
TTAAAGCGCCATTATAATCGCTACGCGTATTTTATTTTCAAATTCCAAACACGAATATTAATTAG
AGAAAATAACCTCAGTAACCAAAAATGCCTTATAATATACGATTTTAACCAACTTTTTTTGGATT
TGCCAAAATGACCAACTAAATCGCAATGCGATCGATAATTCGCAACGCGATCTCTAGAATCGCAA
ATCAGTTCCCAGAATCGCAACGCGATTATGAAGAATCGCAATGCGATAGTACAAAATCGCAATGC
GATTTTCCATAATCGCAACGCGAATATGA
Found at i:9621774 original size:20 final size:20
Alignment explanation
Indices: 9621730--9621943 Score: 162
Period size: 20 Copynumber: 10.6 Consensus size: 20
9621720 GATTCTGACT
*
9621730 ATCGCAACGAGTATCCGTAAA
1 ATCGCAACGCGTATCCGT-AA
*
9621751 ATCGTAACGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
* * *
9621771 ATCGTAACG-ATAATACGTAAA
1 ATCGCAACGCGT-ATCCGT-AA
9621792 ATCGCAACGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
* * * * *
9621812 ATCGCAATGAGAATACGCAA
1 ATCGCAACGCGTATCCGTAA
* **
9621832 ATCACAACGCGTATCTATAA
1 ATCGCAACGCGTATCCGTAA
* * *
9621852 ATCGCAACGAGAATACGTAA
1 ATCGCAACGCGTATCCGTAA
* * *
9621872 ATCGTAATGCGTATCCATAA
1 ATCGCAACGCGTATCCGTAA
* *
9621892 ATCGCAACGAC-AATACGTAAA
1 ATCGCAACG-CGTATCCGT-AA
* *
9621913 ATCACAACGCGTATTCGTAA
1 ATCGCAACGCGTATCCGTAA
9621933 ATCGCAACGCG
1 ATCGCAACGCG
9621944 ATTTTTAAAG
Statistics
Matches: 146, Mismatches: 41, Indels: 13
0.73 0.20 0.06
Matches are distributed among these distances:
19 1 0.01
20 97 0.66
21 47 0.32
22 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (20 bp):
ATCGCAACGCGTATCCGTAA
Found at i:9621780 original size:41 final size:41
Alignment explanation
Indices: 9621730--9621941 Score: 266
Period size: 41 Copynumber: 5.2 Consensus size: 41
9621720 GATTCTGACT
* * *
9621730 ATCGCAACGAGTATCCGTAAAATCGTAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* *
9621771 ATCGTAACGATAATACGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* * * **
9621812 ATCGCAATGAGAATACG-CAAATCACAACGCGTATCTATAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* * *
9621852 ATCGCAACGAGAATACGT-AAATCGTAATGCGTATCCATAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* * *
9621892 ATCGCAACGACAATACGTAAAATCACAACGCGTATTCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
9621933 ATCGCAACG
1 ATCGCAACG
9621942 CGATTTTTAA
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
40 70 0.48
41 76 0.52
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (41 bp):
ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
Found at i:9622625 original size:38 final size:33
Alignment explanation
Indices: 9622559--9622642 Score: 96
Period size: 38 Copynumber: 2.4 Consensus size: 33
9622549 CGCAACGAGA
9622559 GAAATGAAAATCGCAACGAAATAATCGCAACGC
1 GAAATGAAAATCGCAACGAAATAATCGCAACGC
*
9622592 GAAATGAAAATCTCAACGCGAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAA--CGAAAT---AATCGCAACGC
**
9622630 GAAACCAAAATCG
1 GAAATGAAAATCG
9622643 TATTGCAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
33 15 0.36
35 6 0.14
38 21 0.50
ACGTcount: A:0.49, C:0.21, G:0.18, T:0.12
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAAATAATCGCAACGC
Found at i:9622642 original size:19 final size:19
Alignment explanation
Indices: 9622504--9622633 Score: 108
Period size: 19 Copynumber: 6.9 Consensus size: 19
9622494 TTCTAAACTT
* *
9622504 AAAATCGCAACATCAAAATG
1 AAAATCGCAAC-GCGAAATG
* *
9622524 AAAATCGCAACACGAAAATT
1 AAAATCGCAACGCG-AAATG
*** *
9622544 ACTGTCGCAACGAGAGAAATG
1 AAAATCGCAAC--GCGAAATG
9622565 AAAATCGCAA--CGAAAT-
1 AAAATCGCAACGCGAAATG
9622581 --AATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
*
9622598 AAAATCTCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
9622617 AAAATCGCAACGCGAAA
1 AAAATCGCAACGCGAAA
9622634 CCAAAATCGT
Statistics
Matches: 87, Mismatches: 15, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
14 8 0.09
16 6 0.07
17 5 0.06
19 33 0.38
20 23 0.26
21 11 0.13
22 1 0.01
ACGTcount: A:0.49, C:0.21, G:0.17, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:9622710 original size:20 final size:21
Alignment explanation
Indices: 9622670--9622733 Score: 78
Period size: 20 Copynumber: 3.1 Consensus size: 21
9622660 CGCGTTGCGA
* **
9622670 TTCTCTCGTTGCGATAGTCAT
1 TTCTCGCGTTGCGATTTTCAT
9622691 TTC-CGCGTTGCGATTTTCA-
1 TTCTCGCGTTGCGATTTTCAT
*
9622710 TTCTCTCGTTGCGATTTTCAT
1 TTCTCGCGTTGCGATTTTCAT
9622731 TTC
1 TTC
9622734 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 3 0.08
20 28 0.76
21 6 0.16
ACGTcount: A:0.11, C:0.25, G:0.17, T:0.47
Consensus pattern (21 bp):
TTCTCGCGTTGCGATTTTCAT
Found at i:9626325 original size:19 final size:19
Alignment explanation
Indices: 9626300--9626398 Score: 67
Period size: 19 Copynumber: 5.7 Consensus size: 19
9626290 AAAAATGACT
9626300 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
9626319 ATTGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
9626333 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
9626352 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
*
9626366 ATCGCAACGCGAAACT-AAA
1 ATCGCAATGCGAAA-TGAAA
*
9626385 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
9626399 CTAAATTCGC
Statistics
Matches: 64, Mismatches: 5, Indels: 22
0.70 0.05 0.24
Matches are distributed among these distances:
14 19 0.30
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 33 0.52
ACGTcount: A:0.46, C:0.21, G:0.20, T:0.12
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:9626342 original size:33 final size:33
Alignment explanation
Indices: 9626300--9626393 Score: 136
Period size: 33 Copynumber: 2.8 Consensus size: 33
9626290 AAAAATGACT
* * *
9626300 ATCGCAATGCGAAATGAAAATTGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
9626333 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
9626366 ATCGCAACGCGAAACT-AAAATCGCAACG
1 ATCGCAATGCGAAA-TGAAAATCGCAACG
9626394 CGAAACTAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
33 55 0.98
34 1 0.02
ACGTcount: A:0.46, C:0.21, G:0.20, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:9626415 original size:19 final size:19
Alignment explanation
Indices: 9626332--9626408 Score: 85
Period size: 19 Copynumber: 4.3 Consensus size: 19
9626322 GCAACGAGAG
*
9626332 AATCGCAATGCGAAA-TGAA
1 AATCGCAACGCGAAACT-AA
9626351 AATCGCAA--CG--AC-AA
1 AATCGCAACGCGAAACTAA
9626365 AATCGCAACGCGAAACTAA
1 AATCGCAACGCGAAACTAA
9626384 AATCGCAACGCGAAACTAA
1 AATCGCAACGCGAAACTAA
*
9626403 ATTCGC
1 AATCGC
9626409 GTTGCGATTT
Statistics
Matches: 51, Mismatches: 1, Indels: 12
0.80 0.02 0.19
Matches are distributed among these distances:
14 10 0.20
15 1 0.02
16 2 0.04
17 2 0.04
18 2 0.04
19 34 0.67
ACGTcount: A:0.45, C:0.25, G:0.17, T:0.13
Consensus pattern (19 bp):
AATCGCAACGCGAAACTAA
Found at i:9626450 original size:33 final size:33
Alignment explanation
Indices: 9626408--9626502 Score: 154
Period size: 33 Copynumber: 2.9 Consensus size: 33
9626398 ACTAAATTCG
*
9626408 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
9626441 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
* *
9626474 CGTTGCGATTTTCATTCCGCGTTGCGATT
1 CGTTGCGATTTTCATTTCGCATTGCGATT
9626503 TTAGTTTCGC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.11, C:0.25, G:0.20, T:0.44
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:9626497 original size:52 final size:53
Alignment explanation
Indices: 9626441--9626554 Score: 178
Period size: 52 Copynumber: 2.2 Consensus size: 53
9626431 GCGATTCCCT
9626441 CGTTGCGATTTTCA-TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA-TTCCG
1 CGTTGCGATTTT-AGTTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCG
* * *
9626493 CGTTGCGATTTTAGTTTCGCGTTGCGATTTTGTCGTTGCGATTTTCATTTCCG
1 CGTTGCGATTTTAGTTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCG
9626546 CGTTGCGAT
1 CGTTGCGAT
9626555 AGACATTAAG
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
51 1 0.02
52 42 0.74
53 14 0.25
ACGTcount: A:0.11, C:0.22, G:0.23, T:0.45
Consensus pattern (53 bp):
CGTTGCGATTTTAGTTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCG
Found at i:9628794 original size:9 final size:9
Alignment explanation
Indices: 9628776--9628807 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
9628766 CTTTGGGGAT
*
9628776 TTCTTCTTC
1 TTCTTTTTC
9628785 TTCTTTTTC
1 TTCTTTTTC
9628794 TTCTTTTTC
1 TTCTTTTTC
9628803 TTCTT
1 TTCTT
9628808 CAATGTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (9 bp):
TTCTTTTTC
Found at i:9629017 original size:24 final size:24
Alignment explanation
Indices: 9628983--9629036 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
9628973 CTGAAAAATC
9628983 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
9629007 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
9629031 ATCAAA
1 ATCAAA
9629037 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:9629050 original size:24 final size:24
Alignment explanation
Indices: 9628983--9629050 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
9628973 CTGAAAAATC
* * *
9628983 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
9629007 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
9629031 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
9629051 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:9630271 original size:22 final size:22
Alignment explanation
Indices: 9630246--9630287 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
9630236 TATGGCAAAA
9630246 TCCGTCCCCATCTCCGAAGATT
1 TCCGTCCCCATCTCCGAAGATT
9630268 TCCGTCCCCATCTCCGAAGA
1 TCCGTCCCCATCTCCGAAGA
9630288 AATCCCTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.43, G:0.14, T:0.24
Consensus pattern (22 bp):
TCCGTCCCCATCTCCGAAGATT
Found at i:9630690 original size:21 final size:20
Alignment explanation
Indices: 9630629--9630699 Score: 90
Period size: 20 Copynumber: 3.5 Consensus size: 20
9630619 TTCTAAACTT
*
9630629 AAAATCGCAACATGAAAATG
1 AAAATCGCAACACGAAAATG
9630649 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
**
9630669 ACTATCGCAACGA-GAGAAATG
1 AAAATCGCAAC-ACGA-AAATG
9630690 AAAATCGCAA
1 AAAATCGCAA
9630700 TGCGAAACCA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
20 30 0.68
21 14 0.32
ACGTcount: A:0.52, C:0.18, G:0.17, T:0.13
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:9630778 original size:33 final size:33
Alignment explanation
Indices: 9630713--9630791 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
9630703 GAAACCAAAA
* **
9630713 TCGCGTTGCGATTCTCTCGTTGCGGTTTTCATT
1 TCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
9630746 TCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
*
9630779 TCCGTGTTGCGAT
1 T-CGCGTTGCGAT
9630792 AGTTATTCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 31 0.76
34 10 0.24
ACGTcount: A:0.09, C:0.24, G:0.25, T:0.42
Consensus pattern (33 bp):
TCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
Found at i:9630807 original size:20 final size:20
Alignment explanation
Indices: 9630756--9630811 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
9630746 TCGCGTTGCG
9630756 ATTCTCTCGTTGCGATAGTC
1 ATTCTCTCGTTGCGATAGTC
*
9630776 ATT-TC-CGTGTTGCGATAGTT
1 ATTCTCTC--GTTGCGATAGTC
9630796 ATTCTCTCGTTGCGAT
1 ATTCTCTCGTTGCGAT
9630812 TTTCATTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.03
19 2 0.06
20 25 0.81
21 2 0.06
22 1 0.03
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATAGTC
Found at i:9632860 original size:21 final size:21
Alignment explanation
Indices: 9632836--9632902 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
9632826 TCATTCCTCG
9632836 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
9632857 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
9632878 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
9632899 AGAG
1 AGAG
9632903 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:9632860 original size:42 final size:42
Alignment explanation
Indices: 9632784--9632902 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
9632774 GACTCGCCTG
* * * * * * *
9632784 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
9632826 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
9632868 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
9632903 CCCGATTCAC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 58 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:9634252 original size:14 final size:14
Alignment explanation
Indices: 9634233--9634268 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
9634223 ATTGTTTAAT
9634233 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
9634247 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
9634261 TGATTTGT
1 TGATTTGT
9634269 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Done.