Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000849.1 Hibiscus syriacus cultivar Beakdansim tig00001638_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97836

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2013--2045
16
2.1
16
94
0
57
57
21
12
9
1.62
3313--3451
3
47.7
3
90
7
216
65
0
0
33
0.98
3581--5008
134
10.7
134
83
3
1455
30
16
22
30
1.96
6731--6770
2
20.0
2
100
0
80
50
0
0
50
1.00
18933--18994
2
31.5
2
82
9
74
50
3
3
43
1.34
18933--19017
14
6.1
14
76
18
70
55
2
2
40
1.26
18959--19009
25
2.0
27
84
7
70
58
0
3
37
1.16
18945--19017
14
5.1
15
83
9
73
57
0
2
39
1.13
18986--19044
23
2.7
21
82
10
57
69
0
5
25
1.09
18989--19058
21
3.4
20
74
16
63
68
0
4
27
1.08
20167--20325
78
2.0
78
100
0
318
22
7
30
38
1.82
21695--21734
20
2.1
19
90
4
62
35
7
32
25
1.84
26499--26537
18
2.1
19
85
4
53
66
5
7
20
1.36
29883--30024
2
68.5
2
68
20
62
42
4
5
47
1.46
30415--30695
101
2.8
100
78
10
250
33
28
7
30
1.85
30519--30704
101
1.8
101
84
7
252
33
27
6
32
1.84
30812--30912
46
2.2
46
89
1
150
22
31
5
39
1.78
30972--31072
46
2.2
46
89
0
148
26
24
5
42
1.77
34561--34597
19
1.9
19
94
0
65
43
27
0
29
1.55
34871--34984
48
2.4
48
76
1
122
29
26
14
29
1.95
35111--35141
15
2.1
14
94
5
53
35
0
0
64
0.94
35810--35986
91
2.0
90
92
4
295
41
5
14
37
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37443--37488
17
2.7
17
93
0
74
34
15
15
34
1.89
43028--43087
28
2.2
28
87
3
86
63
0
1
35
1.05
46060--46099
2
20.0
2
100
0
80
50
0
0
50
1.00
54653--54711
29
2.0
30
83
9
77
28
6
1
62
1.30
54661--54702
14
3.0
14
79
6
50
28
4
0
66
1.12
54653--54702
15
3.4
15
75
10
50
30
4
0
66
1.10
54740--54773
15
2.5
13
86
13
50
35
2
2
58
1.28
54787--54822
2
18.0
2
100
0
72
50
0
0
50
1.00
55001--55050
2
25.0
2
100
0
100
50
0
0
50
1.00
54925--55018
40
2.3
41
75
8
93
38
4
2
55
1.31
55195--55251
2
28.5
2
92
0
96
52
0
0
47
1.00
74116--74258
65
2.2
65
88
5
209
31
20
13
33
1.92
75843--75879
19
2.0
18
94
5
65
45
0
43
10
1.39
83179--83227
24
2.0
24
88
0
71
46
16
14
22
1.82
83193--83311
24
5.0
24
84
6
143
40
18
15
25
1.90
87931--87982
24
2.2
24
82
0
59
50
17
11
21
1.77
87951--88069
24
5.0
24
88
6
161
40
19
17
22
1.91
87987--88087
48
2.1
48
87
3
141
41
19
15
22
1.90
90534--90570
17
2.1
18
90
5
58
32
24
29
13
1.93
90563--90597
18
1.9
18
94
0
61
14
20
45
20
1.85
92040--92202
64
2.5
65
81
4
195
31
17
25
25
1.97
93685--93738
23
2.3
23
87
0
81
18
25
25
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97252--97306
24
2.4
23
85
14
71
30
18
23
27
1.97

Tables:   1

The End!