Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008490.1 Hibiscus syriacus cultivar Beakdansim tig00111332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 604809
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 3
Found at i:925 original size:24 final size:24
Alignment explanation
Indices: 898--951 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
888 GTATTCGAAA
* *
898 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
922 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
946 TTTGAT
1 TTTGAT
952 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:1134 original size:12 final size:12
Alignment explanation
Indices: 1117--1141 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1107 ATATAATCCT
1117 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1129 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1141 G
1 G
1142 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:3459 original size:33 final size:33
Alignment explanation
Indices: 3413--3539 Score: 184
Period size: 33 Copynumber: 3.8 Consensus size: 33
3403 GGAAATTACT
3413 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* * **
3446 ATCGCAATACGAAATGAAAATCGCAATGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
3478 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
3512 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
3540 CGAATTTAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
32 1 0.01
33 79 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:3525 original size:66 final size:66
Alignment explanation
Indices: 3414--3546 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
3404 GAAATTACTA
* *
3414 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATACGAAATGAAAATCGCAATGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATACGAAATGAAAATCGCAACGCGAAT
3479 T
66 T
* *
3480 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATACGAAATGAAAATCGCAACGCGAAT
3545 T
66 T
3546 T
1 T
3547 AATTTCGCGT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATACGAAATGAAAATCGCAACGCGAAT
T
Found at i:3561 original size:19 final size:20
Alignment explanation
Indices: 3539--3581 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
3529 AAATCGCAAC
3539 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
3558 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
3578 GCGA
1 GCGA
3582 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:3566 original size:14 final size:14
Alignment explanation
Indices: 3567--3600 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
3557 TGCGATTTTC
3567 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
3581 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
3595 ATTTTC
1 ATTTTC
3601 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:3740 original size:14 final size:15
Alignment explanation
Indices: 3721--3757 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
3711 CATCAATTAA
3721 ACAAATCAAC-TTTT
1 ACAAATCAACTTTTT
3735 ACAAATC-ACTTTTT
1 ACAAATCAACTTTTT
3749 ACAAATCAA
1 ACAAATCAA
3758 TTAAACAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.10
14 18 0.86
15 1 0.05
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (15 bp):
ACAAATCAACTTTTT
Found at i:5197 original size:42 final size:41
Alignment explanation
Indices: 5112--5234 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
5102 GTGAATCGGG
* * * * *
5112 CTCTTGAATGGTGGGA-GGGACCTCTTCAATGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
5154 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
5196 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
5235 CGAGTCGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.24
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:7315 original size:33 final size:33
Alignment explanation
Indices: 7258--7356 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
7248 ACGAGATAAT
*
7258 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACCA
*
7292 GAGAATCGCAACGCGAAATGACTATCGCGACCA
1 GAGAATCGCAACGCGAAATGACTATCGCAACCA
* **
7325 GACAATCGCAACGCGAAATGAAAATCGCAACC
1 GAGAATCGCAACGCGAAATGACTATCGCAACC
7357 GCGAAATAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 45 0.76
34 14 0.24
ACGTcount: A:0.39, C:0.26, G:0.23, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACCA
Found at i:7350 original size:19 final size:19
Alignment explanation
Indices: 7233--7398 Score: 136
Period size: 20 Copynumber: 9.1 Consensus size: 19
7223 TCTTTTGGTT
*
7233 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
7252 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
7272 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
7290 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
7306 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
7324 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
7339 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
*
7359 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
7378 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
7397 GA
1 GA
7399 TTTTGGTTTC
Statistics
Matches: 119, Mismatches: 15, Indels: 26
0.74 0.09 0.16
Matches are distributed among these distances:
14 19 0.16
15 3 0.03
16 2 0.02
17 1 0.01
18 4 0.03
19 43 0.36
20 45 0.38
21 2 0.02
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:7427 original size:19 final size:19
Alignment explanation
Indices: 7394--7474 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
7384 AAAATCGCAA
**
7394 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
7413 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
*
7432 TGCGA---TTA--TCTCGT
1 TGCGATTTTTATTTCGCGT
**
7446 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
7466 TGCGATTTT
1 TGCGATTTT
7475 CATTCTCGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
14 10 0.20
16 3 0.06
17 3 0.06
19 23 0.46
20 11 0.22
ACGTcount: A:0.11, C:0.17, G:0.25, T:0.47
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:8084 original size:20 final size:20
Alignment explanation
Indices: 7991--8084 Score: 98
Period size: 20 Copynumber: 4.7 Consensus size: 20
7981 CGCTATGTAA
* *
7991 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTAAGT
*
8011 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
* ** * *
8031 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTAAGT
*
8052 ATCGCATTGCGATAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
8072 ATCGCGTTGCGAT
1 ATCGCGTTGCGAT
8085 TTTCCCAATT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
20 46 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTAAGT
Found at i:8099 original size:21 final size:21
Alignment explanation
Indices: 8073--8148 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
8063 ATAGTAAGTA
8073 TCGCGTTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTCCCAAT
* **
8094 TCGCGTTGCGA-TTTACTTAT
1 TCGCGTTGCGATTTTCCCAAT
*
8114 TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTCCCAAT
8135 TCGCGTTGCGATTT
1 TCGCGTTGCGATTT
8149 ACTTATTCGC
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.41
Consensus pattern (21 bp):
TCGCGTTGCGATTTTCCCAAT
Found at i:8103 original size:41 final size:41
Alignment explanation
Indices: 8012--8146 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
8002 AAAGTCAGTA
* * ** *
8012 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCGTTGCGATTTTCCCAAT
*
8052 ATCGCATTGCGATAGTAAGTATCGCGTTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCGTTGCGATTTTCCCAAT
* ** *
8094 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCGTTGCGATTTTCCCAAT
8135 TCGCGTTGCGAT
1 TCGCGTTGCGAT
8147 TTACTTATTC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 4 0.05
41 75 0.93
42 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCGTTGCGATTTTCCCAAT
Found at i:8117 original size:20 final size:21
Alignment explanation
Indices: 8073--8165 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
8063 ATAGTAAGTA
*
8073 TCGCGTTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTACCAAT
**
8094 TCGCGTTGCGA-TTTACTTAT
1 TCGCGTTGCGATTTTACCAAT
* *
8114 TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTACCAAT
**
8135 TCGCGTTGCGA-TTTACTTAT
1 TCGCGTTGCGATTTTACCAAT
*
8155 TCGCATTGCGA
1 TCGCGTTGCGA
8166 ATTGGGAAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
20 32 0.54
21 27 0.46
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (21 bp):
TCGCGTTGCGATTTTACCAAT
Found at i:8147 original size:41 final size:41
Alignment explanation
Indices: 8073--8165 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
8063 ATAGTAAGTA
*
8073 TCGCGTTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
8114 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
8155 TCGCATTGCGA
1 TCGCATTGCGA
8166 ATTGGGAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:9301 original size:6 final size:6
Alignment explanation
Indices: 9290--9314 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9280 CTGAAACCTC
9290 ACGTGT ACGTGT ACGTGT ACGTGT A
1 ACGTGT ACGTGT ACGTGT ACGTGT A
9315 TATTCGAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.32
Consensus pattern (6 bp):
ACGTGT
Found at i:13010 original size:218 final size:218
Alignment explanation
Indices: 12632--13065 Score: 859
Period size: 218 Copynumber: 2.0 Consensus size: 218
12622 TTGAGTACAC
12632 AAAAAACATGTTTACTTGTGCAATACTTATCCATGATGAAAGCAAGTGAGCCATCATATGATTTG
1 AAAAAACATGTTTACTTGTGCAATACTTATCCATGATGAAAGCAAGTGAGCCATCATATGATTTG
12697 GCAAGCCTGCCATGGCCAGCCCTTCCTTTTTTATTCTAAAAAAAGAACATTATATATGTGTTCCA
66 GCAAGCCTGCCATGGCCAGCCCTTCCTTTTTTATTCTAAAAAAAGAACATTATATATGTGTTCCA
*
12762 GCTGAGCCTTGTGTAAAGAATGATAAACACCATGGAGGTTTTTTTTCCCTTTCCTCTCTTAACTT
131 GCTGAGCCTTGTGTAAAGAATGATAAACACCATGGAGGTTTTTTTCCCCTTTCCTCTCTTAACTT
12827 CCCCAAAGTTCTCTTCTTATTCT
196 CCCCAAAGTTCTCTTCTTATTCT
12850 AAAAAACATGTTTACTTGTGCAATACTTATCCATGATGAAAGCAAGTGAGCCATCATATGATTTG
1 AAAAAACATGTTTACTTGTGCAATACTTATCCATGATGAAAGCAAGTGAGCCATCATATGATTTG
12915 GCAAGCCTGCCATGGCCAGCCCTTCCTTTTTTATTCTAAAAAAAGAACATTATATATGTGTTCCA
66 GCAAGCCTGCCATGGCCAGCCCTTCCTTTTTTATTCTAAAAAAAGAACATTATATATGTGTTCCA
12980 GCTGAGCCTTGTGTAAAGAATGATAAACACCATGGAGGTTTTTTTCCCCTTTCCTCTCTTAACTT
131 GCTGAGCCTTGTGTAAAGAATGATAAACACCATGGAGGTTTTTTTCCCCTTTCCTCTCTTAACTT
13045 CCCCAAAGTTCTCTTCTTATT
196 CCCCAAAGTTCTCTTCTTATT
13066 TGTGCAAGTA
Statistics
Matches: 215, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
218 215 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.35
Consensus pattern (218 bp):
AAAAAACATGTTTACTTGTGCAATACTTATCCATGATGAAAGCAAGTGAGCCATCATATGATTTG
GCAAGCCTGCCATGGCCAGCCCTTCCTTTTTTATTCTAAAAAAAGAACATTATATATGTGTTCCA
GCTGAGCCTTGTGTAAAGAATGATAAACACCATGGAGGTTTTTTTCCCCTTTCCTCTCTTAACTT
CCCCAAAGTTCTCTTCTTATTCT
Found at i:19465 original size:2 final size:2
Alignment explanation
Indices: 19458--19493 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
19448 ATTCCTAATG
19458 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19494 CAGATTATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24215 original size:16 final size:16
Alignment explanation
Indices: 24194--24225 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
24184 TTGCTATTCA
24194 CGTGAATAGTAAATTT
1 CGTGAATAGTAAATTT
24210 CGTGAATAGTAAATTT
1 CGTGAATAGTAAATTT
24226 TTTTATCGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (16 bp):
CGTGAATAGTAAATTT
Found at i:32268 original size:60 final size:60
Alignment explanation
Indices: 32170--32282 Score: 133
Period size: 60 Copynumber: 1.9 Consensus size: 60
32160 TATAGGTTAC
* *
32170 TACTTTTTTAAGTCCTTCGACTATTAAAAACTATAAAATAGTC-CTTCGACTATAGAATGT
1 TACTTTGTTAAGTCCTTCGACTATTAAAAACTACAAAATAGTCAC-TCGACTATAGAATGT
* * *
32230 TACTTTGTTAAGT-CTCTCGATTATT-AAAAGTAACAAAATGGTCACTCGACTAT
1 TACTTTGTTAAGTCCT-TCGACTATTAAAAACT-ACAAAATAGTCACTCGACTAT
32283 TTATTATGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
59 7 0.16
60 37 0.82
61 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (60 bp):
TACTTTGTTAAGTCCTTCGACTATTAAAAACTACAAAATAGTCACTCGACTATAGAATGT
Found at i:32596 original size:60 final size:60
Alignment explanation
Indices: 32490--32604 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 60
32480 ATAGTCGGGT
* * * *
32490 GATCATTTTGTAACTTTTAATAGTCAATGGACTCAGCAACGAAATACTCTATAGTTGAAG
1 GATCATTTTGTAACTTTTAATAATCAATGGACTCAACAAAGAAATACCCTATAGTTGAAG
* * *
32550 GATCATTTTGTAACTTTTAATAATCAA-GAGACTTAATAAAGTAATACCCTATAGT
1 GATCATTTTGTAACTTTTAATAATCAATG-GACTCAACAAAGAAATACCCTATAGT
32605 CGGGGATCAT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
59 1 0.02
60 46 0.98
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (60 bp):
GATCATTTTGTAACTTTTAATAATCAATGGACTCAACAAAGAAATACCCTATAGTTGAAG
Found at i:32939 original size:21 final size:20
Alignment explanation
Indices: 32893--32940 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
32883 GATTCTGACT
32893 ATCGCATTGAGATTTCCCAA
1 ATCGCATTGAGATTTCCCAA
*
32913 ATTCGCATT-ACGATTTTCCTAA
1 A-TCGCATTGA-GA-TTTCCCAA
32935 ATCGCA
1 ATCGCA
32941 ATGCGATTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 14 0.58
22 8 0.33
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCGCATTGAGATTTCCCAA
Found at i:32947 original size:21 final size:22
Alignment explanation
Indices: 32905--32948 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
32895 CGCATTGAGA
*
32905 TTTCCCAAATTCGCATTACGAT
1 TTTCCCAAATTCGCAATACGAT
* *
32927 TTTCCTAAA-TCGCAATGCGAT
1 TTTCCCAAATTCGCAATACGAT
32948 T
1 T
32949 ACGTAAATCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.36
Consensus pattern (22 bp):
TTTCCCAAATTCGCAATACGAT
Found at i:36310 original size:20 final size:21
Alignment explanation
Indices: 36285--36398 Score: 130
Period size: 20 Copynumber: 5.7 Consensus size: 21
36275 GACATTCATT
*
36285 TGACTATCGTAACGC-GAATA
1 TGACTATCGCAACGCGGAATA
* *
36305 TGACTATCCCAACACGGAA-A
1 TGACTATCGCAACGCGGAATA
* *
36325 TAACTATCGCAATGCGGAAT-
1 TGACTATCGCAACGCGGAATA
*
36345 TGACTATCGCAATGCGGAAT-
1 TGACTATCGCAACGCGGAATA
*
36365 TGACTATCGCAGCGCGGAA-A
1 TGACTATCGCAACGCGGAATA
36385 TGACTATCGCAACG
1 TGACTATCGCAACG
36399 AGAGAATCGT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
20 77 0.96
21 3 0.04
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (21 bp):
TGACTATCGCAACGCGGAATA
Found at i:36383 original size:60 final size:60
Alignment explanation
Indices: 36284--36396 Score: 156
Period size: 60 Copynumber: 1.9 Consensus size: 60
36274 AGACATTCAT
*
36284 TTGACTATCGTAACGCGAATATGACTATCCCAACACGGAAATAACTATCGCAATGCGGAA
1 TTGACTATCGCAACGCGAATATGACTATCCCAACACGGAAATAACTATCGCAATGCGGAA
* * * * *
36344 TTGACTATCGCAATGCGGAAT-TGACTATCGCAGCGCGGAAATGACTATCGCAA
1 TTGACTATCGCAACGC-GAATATGACTATCCCAACACGGAAATAACTATCGCAA
36397 CGAGAGAATC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
60 42 0.91
61 4 0.09
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (60 bp):
TTGACTATCGCAACGCGAATATGACTATCCCAACACGGAAATAACTATCGCAATGCGGAA
Found at i:36458 original size:34 final size:33
Alignment explanation
Indices: 36381--36465 Score: 116
Period size: 33 Copynumber: 2.5 Consensus size: 33
36371 TCGCAGCGCG
** *
36381 GAAATGACTATCGCAACGAGAGAATCGTAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
*
36414 GAAATGAAAATCGCAACGAGTGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
*
36447 GAAAATGAAAATCACAACG
1 G-AAATGAAAATCGCAACG
36466 CGAAATTAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 30 0.65
34 16 0.35
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAATGC
Found at i:36525 original size:34 final size:34
Alignment explanation
Indices: 36482--36575 Score: 109
Period size: 33 Copynumber: 2.8 Consensus size: 34
36472 TAGTTTCGCG
36482 TTGCGATTTTCATTTTCGCATTGCGATTCACTCA
1 TTGCGATTTTCATTTTCGCATTGCGATTCACTCA
* * * *
36516 TTGCGATTTT-AATTTCGCATTGCGAATCTCTCG
1 TTGCGATTTTCATTTTCGCATTGCGATTCACTCA
* ** *
36549 TTGTGATAGTCATTTTCGCGTTGCGAT
1 TTGCGATTTTCATTTTCGCATTGCGAT
36576 ATTCTGTTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
33 26 0.53
34 23 0.47
ACGTcount: A:0.17, C:0.20, G:0.19, T:0.44
Consensus pattern (34 bp):
TTGCGATTTTCATTTTCGCATTGCGATTCACTCA
Found at i:36779 original size:33 final size:33
Alignment explanation
Indices: 36717--36801 Score: 116
Period size: 33 Copynumber: 2.5 Consensus size: 33
36707 ATTAGTTTCG
* *
36717 CGTTGCGATTTTTATTTTCGCATTGCGATTCACT
1 CGTTGCGATTTTCA-TTTCGCATTACGATTCACT
*
36751 CGTTGCGATTTTCATTTCGCATTACGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTACGATTCACT
**
36784 CGTTGCGATAGTCATTTC
1 CGTTGCGATTTTCATTTC
36802 TGCGTTGTGA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 33 0.72
34 13 0.28
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTACGATTCACT
Found at i:36861 original size:237 final size:237
Alignment explanation
Indices: 36446--36920 Score: 835
Period size: 237 Copynumber: 2.0 Consensus size: 237
36436 AATCGCAATG
36446 CGAAAATGAAAATCACAACGCGAAATTAGTTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTC
1 CGAAAATGAAAATCACAACGCGAAATTAGTTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTC
* *
36511 ACTCATTGCGATTTTAATTTCGCATTGCGAATCTCTCGTTGTGATAGTCATTTTCGCGTTGCGAT
66 ACTCATTGCGATTTTAATTTCGCATTACGAATCTCTCGTTGCGATAGTCATTTTCGCGTTGCGAT
*
36576 ATTCTGTTTTGCATTCAACATAATGCAGATTGAAATCAAAAAATCAACTATTACATTTCAATCAA
131 AGTCTGTTTTGCATTCAACATAATGCAGATTGAAATCAAAAAATCAACTATTACATTTCAATCAA
36641 TTAAACAAGAACAAATATTATGTACACATCAATTAAACAAAT
196 TTAAACAAGAACAAATATTATGTACACATCAATTAAACAAAT
* *
36683 CGAAAATGAAAATCGCAACGCGAAATTAGTTTCGCGTTGCGATTTTTATTTTCGCATTGCGATTC
1 CGAAAATGAAAATCACAACGCGAAATTAGTTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTC
* * * *
36748 ACTCGTTGCGATTTTCATTTCGCATTACGATTCTCTCGTTGCGATAGTCA-TTTCTGCGTTGTGA
66 ACTCATTGCGATTTTAATTTCGCATTACGAATCTCTCGTTGCGATAGTCATTTTC-GCGTTGCGA
*
36812 TAGTCTGTTTTGCATTCAACATAATGCAGATTGAAATCAACAAATCAACTATTACATTTCAATCA
130 TAGTCTGTTTTGCATTCAACATAATGCAGATTGAAATCAAAAAATCAACTATTACATTTCAATCA
*
36877 ATTAAACAAGCACAAATATTATGTACACATCAATTAAACAAAT
195 ATTAAACAAGAACAAATATTATGTACACATCAATTAAACAAAT
36920 C
1 C
36921 AACATTTACA
Statistics
Matches: 226, Mismatches: 11, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
236 4 0.02
237 222 0.98
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (237 bp):
CGAAAATGAAAATCACAACGCGAAATTAGTTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTC
ACTCATTGCGATTTTAATTTCGCATTACGAATCTCTCGTTGCGATAGTCATTTTCGCGTTGCGAT
AGTCTGTTTTGCATTCAACATAATGCAGATTGAAATCAAAAAATCAACTATTACATTTCAATCAA
TTAAACAAGAACAAATATTATGTACACATCAATTAAACAAAT
Found at i:36933 original size:14 final size:14
Alignment explanation
Indices: 36914--36950 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
36904 CATCAATTAA
36914 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
36928 ACAAATCATCTTTT
1 ACAAATCAACATTT
36942 ACAAATCAA
1 ACAAATCAA
36951 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:38926 original size:20 final size:20
Alignment explanation
Indices: 38903--38961 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
38893 AAATCACAAC
38903 GCGAAAATGACTATCGCAAT
1 GCGAAAATGACTATCGCAAT
38923 GCGAAAATGACTATCGCAAT
1 GCGAAAATGACTATCGCAAT
**
38943 GCGAATTTGACTATCGCAA
1 GCGAAAATGACTATCGCAA
38962 CGAGAGAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (20 bp):
GCGAAAATGACTATCGCAAT
Found at i:39033 original size:20 final size:20
Alignment explanation
Indices: 39008--39111 Score: 121
Period size: 20 Copynumber: 5.5 Consensus size: 20
38998 GATTCTTTCG
**
39008 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
39028 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
* *
39048 TTGTGAT--TC--TCTCG--
1 TTGCGATAGTCATTTTCGCA
*
39062 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
39082 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
39102 TTGCGATAGT
1 TTGCGATAGT
39112 AAACTATTCT
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
14 6 0.08
16 6 0.08
18 6 0.08
20 53 0.75
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.39
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:39063 original size:54 final size:54
Alignment explanation
Indices: 38970--39108 Score: 199
Period size: 54 Copynumber: 2.6 Consensus size: 54
38960 AACGAGAGAA
* ** *
38970 TCGCAATGCGATTTTCA-TTTCGCATTGCGATTCTTTCGTTGCGATAGTCAAAT
1 TCGCATTGCGATAGTCATTTTCGCATTGCGATTCTCTCGTTGCGATAGTCAAAT
* **
39023 TCGCATTGCGATAGTCATTTTCGCATTGTGATTCTCTCGTTGCGATAGTCATTT
1 TCGCATTGCGATAGTCATTTTCGCATTGCGATTCTCTCGTTGCGATAGTCAAAT
*
39077 TCGCGTTGCGATAGTCATTTTCGCATTGCGAT
1 TCGCATTGCGATAGTCATTTTCGCATTGCGAT
39109 AGTAAACTAT
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
53 14 0.18
54 62 0.82
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (54 bp):
TCGCATTGCGATAGTCATTTTCGCATTGCGATTCTCTCGTTGCGATAGTCAAAT
Found at i:41017 original size:20 final size:20
Alignment explanation
Indices: 40994--41043 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
40984 CTGAAACTGT
*
40994 AAATCGCAACATGAAAATGA
1 AAATCGCAACACGAAAATGA
41014 AAATCGCAACACGAAAATGA
1 AAATCGCAACACGAAAATGA
**
41034 CTATCGCAAC
1 AAATCGCAAC
41044 GCAAATTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.50, C:0.22, G:0.14, T:0.14
Consensus pattern (20 bp):
AAATCGCAACACGAAAATGA
Found at i:48125 original size:42 final size:39
Alignment explanation
Indices: 48064--48149 Score: 102
Period size: 42 Copynumber: 2.1 Consensus size: 39
48054 TCTTAGAGTC
* * *
48064 ATGCTTTTTAGATTTCTAG-TTCACCATGGCAGTTCGGGTT
1 ATGCTTTTTAGATTCCTAGTTTC-CCAAGGCAGTTC-AGTT
48104 ATGCTCTTTCTAGATTCCTAGTTTCCCAAGGCAGTTCAGTT
1 ATGCT-TTT-TAGATTCCTAGTTTCCCAAGGCAGTTCAGTT
48145 ATGCT
1 ATGCT
48150 AAAGTCGATG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
40 5 0.12
41 11 0.28
42 21 0.52
43 3 0.08
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.41
Consensus pattern (39 bp):
ATGCTTTTTAGATTCCTAGTTTCCCAAGGCAGTTCAGTT
Found at i:52015 original size:14 final size:14
Alignment explanation
Indices: 51996--52066 Score: 70
Period size: 14 Copynumber: 4.7 Consensus size: 14
51986 TCGCCTTTGC
*
51996 AAAATATTTTTTAG
1 AAAATATTTTTTAA
52010 AAAATATTTTTTTAA
1 AAAATA-TTTTTTAA
*
52025 ATAAATTATATTTTCAAA
1 A-AAA-TAT-TTTT-TAA
*
52043 AAAATATTTTTTAG
1 AAAATATTTTTTAA
52057 AAAATATTTT
1 AAAATATTTT
52067 ATGTTGATTG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
14 17 0.35
15 12 0.25
16 7 0.15
17 9 0.19
18 3 0.06
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (14 bp):
AAAATATTTTTTAA
Found at i:52383 original size:25 final size:25
Alignment explanation
Indices: 52337--52389 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
52327 AGTATCGTAT
*
52337 TATATTTTAAAAATATTAATTATAA
1 TATATTTTAAAAATATTAATTAAAA
* * *
52362 TATATTTTAAATATCTTTATTAAAA
1 TATATTTTAAAAATATTAATTAAAA
52387 TAT
1 TAT
52390 TATTAGATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TATATTTTAAAAATATTAATTAAAA
Found at i:59393 original size:18 final size:18
Alignment explanation
Indices: 59370--59414 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
59360 GTCGAATTGA
59370 GTTGTGAATGACTCTTTC
1 GTTGTGAATGACTCTTTC
59388 GTTGTGAATGACTCTTTC
1 GTTGTGAATGACTCTTTC
*
59406 GTTGCGAAT
1 GTTGTGAAT
59415 TTGAGTCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (18 bp):
GTTGTGAATGACTCTTTC
Found at i:59995 original size:84 final size:84
Alignment explanation
Indices: 59885--61832 Score: 2115
Period size: 84 Copynumber: 23.4 Consensus size: 84
59875 GTAGATAGCT
* * * *
59885 CTTCTCGACTTAAGTTGTGCTACAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
*
59950 CTTTGGTTGGCAGACAACC
66 CTTTGGTTGGCAGATAACC
* * * * * * * **
59969 CTTCTCGACTTCAGGTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCAAACTCGGGGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
*
60034 TC--T--TTGGCAGATAGCC
65 TCTTTGGTTGGCAGATAACC
* * * *
60050 CTTCTCGACTTAAGTTATACTGGAAATGATGTGTCGTT-GAGCTGAGCGTAGTCGAACTCAAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
* ** *
60114 ACTTTTGG-TCACAGATAACA
65 TC-TTTGGTTGGCAGATAACC
*** * * * * * * * **
60134 CTTCTATCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATTGAACTCGGGGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
*
60199 TC--T--TTGGCAGATAGCC
65 TCTTTGGTTGGCAGATAACC
* * * *
60215 CTTCTCGACTTAAGCTATGCTGCAAATGATGTGTCGTT-GAGCTGAGCATAGTCGAACTCAAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
* * *
60279 TCTTTTGTTGACAGACAACC
65 TCTTTGGTTGGCAGATAACC
* * *
60299 CTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
60364 CTTTGGTTGGCAGATAACC
66 CTTTGGTTGGCAGATAACC
60383 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
*
60448 CTTTGGTTGGCAGACAACC
66 CTTTGGTTGGCAGATAACC
* * *
60467 CTTCTCGACTTCAGTTATGCTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCAAACTCAAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCGAAGG
* *
60531 TCTTTTGTTGGCAGACAACC
65 TCTTTGGTTGGCAGATAACC
* * * *
60551 CTTCTAGACTTAAGTTGTGCTGCAAATGATGTGTCGTT-GAGCTGAGCGTAGTCGAACTCAAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
* * *
60615 TCTTTTGTTGGCATACAACC
65 TCTTTGGTTGGCAGATAACC
* * * * * *
60635 CTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTAGAGCTGAGTGTAGTCAAACTCGAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
**
60700 CTTTTGG-TCACAGATAACC
66 C-TTTGGTTGGCAGATAACC
* * * * * *
60719 CTTCTAGCCTTGAGTTATGCTGTAAATGAGGTGCCTTGGAGCTGAACGTAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
60784 CTTTGGTTGGCAGATAACC
66 CTTTGGTTGGCAGATAACC
** *
60803 CTTCTTAACTTAAGTTATGCTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAACTCAAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCGAAGG
* *
60867 TCTTTTGTTGGCAGACAACC
65 TCTTTGGTTGGCAGATAACC
* * * * *
60887 CTTCTAGACTTAAGTTGTGTTGCAAATGATGTGCCGTT-AAGCTGAGCGTAGTCGAACTCAAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCGAAGG
* *
60951 TCTTTTGTTGGCAGACAACC
65 TCTTTGGTTGGCAGATAACC
* * * * ** *
60971 CTTCTAGACTTAAGTTGTGCTACAAATGATATGCCTTAAAGCTGAGTGTAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
**
61036 CTTTTGG-TCACAGATAACC
66 C-TTTGGTTGGCAGATAACC
* * * * * * * * * **
61055 CTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
*
61120 TC--T--TTGGCAGATAGCC
65 TCTTTGGTTGGCAGATAACC
* * *
61136 CTTCTCGACTTAAGCTATGCTACAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
*
61201 CTTTGGTTAGCAGATAACC
66 CTTTGGTTGGCAGATAACC
* * * * *
61220 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCAAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
*
61285 TCTTTTGG-TGACAGATAACC
65 TC-TTTGGTTGGCAGATAACC
* * * * * * * * *
61305 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGATGAGTGTAATCGAACTCGAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
*
61370 TC--T--TTGGCAGATAGCC
65 TCTTTGGTTGGCAGATAACC
*
61386 CTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
61451 CTTTGGTTGGCAGATAACC
66 CTTTGGTTGGCAGATAACC
* * * * * * *
61470 CTTCTCGACTTGAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCAAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
*
61535 TCTTTTGG-TGACAGATAACC
65 TC-TTTGGTTGGCAGATAACC
* * * * * * * * *
61555 CTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCAAACTCGAAGG
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
*
61620 TC--T--TTGGCAGATAGCC
65 TCTTTGGTTGGCAGATAACC
*
61636 CTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
61701 CTTTGGTTGGCAGATAACC
66 CTTTGGTTGGCAGATAACC
* * *
61720 CTCCTCGACTTGAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
*
61785 CTTTGG-TGACAGATAACC
66 CTTTGGTTGGCAGATAACC
* * * * *
61803 ATTCTAGCCTTGAGTTATGCTGTAAATGAT
1 CTTCTCGACTTAAGTTATGCTGCAAATGAT
61833 TTGTTTTTAA
Statistics
Matches: 1586, Mismatches: 237, Indels: 83
0.83 0.12 0.04
Matches are distributed among these distances:
80 122 0.08
81 190 0.12
82 8 0.01
83 51 0.03
84 917 0.58
85 288 0.18
86 10 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (84 bp):
CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
CTTTGGTTGGCAGATAACC
Found at i:60030 original size:165 final size:167
Alignment explanation
Indices: 59827--61832 Score: 2116
Period size: 165 Copynumber: 12.0 Consensus size: 167
59817 GCTATGTTGT
* * * * * ** * *
59827 AAATGATATGACCTCGAAGTTGAGTGTAATCGAACTCGGGGGTCTTTGGT-AGATAGCTCTTCTC
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTC
* * * *
59891 GACTTAAGTTGTGCTACAAATGATATG-CCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTG
66 GACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTG
* * * *
59955 GTTGGCAGACAACCCTTCTCGACTTCAGGTATGCTGC
131 GTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * * ** *
59992 AAATGATGTGCCCTCGAAGCTGAGTGTAATCAAACTCGGGGGTCTTTGG-CAGATAGCCCTTCTC
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTC
* * * * * *
60056 GACTTAAGTTATACTGGAAATGATGTGTCGTT-GAGCTGAGCGTAGTCGAACTCAAAGGACTTTT
66 GACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTT
** * ** * *
60120 GG-TCACAGATAACACTTCTATCCTTGAGTTATGCTGT
130 GGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * * ** *
60157 AAATGATGTGCCCTCGAAGCTGAGTGTAATTGAACTCGGGGGTCTTTGG-CAGATAGCCCTTCTC
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTC
* * * * * *
60221 GACTTAAGCTATGCTGCAAATGATGTGTCGTT-GAGCTGAGCATAGTCGAACTCAAAGGTCTTTT
66 GACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTG
* * *
60285 GTTGACAGACAACCCTTCTAGACTTAAGTTGTGCTGC
131 GTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * *
60322 AAATGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGG-T--CAGATAACCCTT
60386 CTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
63 CTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
* * *
60450 TTGGTTGGCAGACAACCCTTCTCGACTTCAGTTATGCTGC
128 TTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * * * * *
60490 AAATGATGTGCCGTTG-AGCTGAGCGTAGTCAAACTCAAAGGTCTTTTGTTGGCAGACAACCCTT
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTC-TTTG--GTCAGATAACCCTT
* * * * *
60554 CTAGACTTAAGTTGTGCTGCAAATGATGTGTCGTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCT
63 CTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
* * * *
60618 TTTGTTGGCATACAACCCTTCTAGACTTAAGTTGTGCTGC
128 TTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* *
60658 AAATGATATG-CCTT-AGAGCTGAGTGTAGTCAAACTCGAAGGTCTTTTGGTCACAGATAACCCT
1 AAATGATGTGCCCTTGA-AGCTGAGTGTAGTCGAACTCGAAGGTC-TTTGGT--CAGATAACCCT
* * * * * *
60721 TCTAGCCTTGAGTTATGCTGTAAATGAGGTG-CCTTGGAGCTGAACGTAGTCGAACTCGAAGGTC
62 TCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
60785 TTTGGTTGGCAGATAACCCTTCTTA-ACTTAAGTTATGCTGC
127 TTTGGTTGGCAGATAACCCTTC-TAGACTTAAGTTATGCTGC
* * * * *
60826 AAATGATGTGCCGTTG-AGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTT
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTC-TTTG--GTCAGATAACCCTT
* * * * * *
60890 CTAGACTTAAGTTGTGTTGCAAATGATGTGCCGTT-AAGCTGAGCGTAGTCGAACTCAAAGGTCT
63 CTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
* * * *
60954 TTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTAC
128 TTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* *
60994 AAATGATATG-CCTTAAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTT
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTC-TTTGGT--CAGATAACCCTT
* * * * * * * * * **
61058 CTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTC-
63 CTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
* * * *
61122 -T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTAC
128 TTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * *
61159 AAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTAGCAGATAACCCTT
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGG-T--CAGATAACCCTT
* * * * *
61223 CTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCAAAGGTCT
63 CTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-
* * * *
61288 TTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGT
127 TTTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * * *
61328 AAATGATGTGCCCTCGAAGATGAGTGTAATCGAACTCGAAGGTCTTTGG-CAGATAGCCCTTCTC
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTC
*
61392 GACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTG
66 GACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTG
* *
61456 GTTGGCAGATAACCCTTCTCGACTTGAGTTATGCTGC
131 GTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * * *
61493 AAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCAAAGGTCTTTTGGTGACAGATAACCCTT
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTC-TTTGGT--CAGATAACCCTT
* * * * * * * * *
61558 CTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCAAACTCGAAGGTC-
63 CTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
* * *
61622 -T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
128 TTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * *
61659 AAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTC
1 AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGG-T--CAGATAACCCTT
* *
61723 CTCGACTTGAGTTATGCTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
63 CTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
* * * * *
61787 TTGG-TGACAGATAACCATTCTAGCCTTGAGTTATGCTGT
128 TTGGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
61826 AAATGAT
1 AAATGAT
61833 TTGTTTTTAA
Statistics
Matches: 1574, Mismatches: 219, Indels: 94
0.83 0.12 0.05
Matches are distributed among these distances:
164 78 0.05
165 588 0.37
166 98 0.06
167 49 0.03
168 584 0.37
169 115 0.07
170 61 0.04
171 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (167 bp):
AAATGATGTGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTC
GACTTAAGTTATGCTGCAAATGATGTGCCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTG
GTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
Found at i:64940 original size:18 final size:19
Alignment explanation
Indices: 64899--64943 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
64889 AGTTAATGTG
*
64899 AATGTAAAGAAAATAACAA
1 AATGCAAAGAAAATAACAA
*
64918 AATGCAAAGAAAATAA-GA
1 AATGCAAAGAAAATAACAA
64936 AATGCAAA
1 AATGCAAA
64944 ATGTCTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.67, C:0.07, G:0.13, T:0.13
Consensus pattern (19 bp):
AATGCAAAGAAAATAACAA
Found at i:79230 original size:12 final size:12
Alignment explanation
Indices: 79213--79244 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
79203 ACATATGAAT
79213 ATATTTTAAAAA
1 ATATTTTAAAAA
*
79225 ATATTTTAAATA
1 ATATTTTAAAAA
79237 ATATTTTA
1 ATATTTTA
79245 TTTAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATATTTTAAAAA
Found at i:81479 original size:20 final size:19
Alignment explanation
Indices: 81441--81481 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
81431 CTTGTATTGA
81441 ATTATATTAATAAAAAAAT
1 ATTATATTAATAAAAAAAT
* *
81460 ATTATCTTATATATAAAAAT
1 ATTATATTA-ATAAAAAAAT
81480 AT
1 AT
81482 CTTATGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTATATTAATAAAAAAAT
Found at i:86036 original size:5 final size:6
Alignment explanation
Indices: 86017--86046 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
86007 TTTTTCCTTG
86017 AAATAA AAATAA AAATAA AAAT-A AAATAA A
1 AAATAA AAATAA AAATAA AAATAA AAATAA A
86047 CTACAAACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:99166 original size:25 final size:24
Alignment explanation
Indices: 99129--99181 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
99119 TATTATGGTA
99129 TAAAAAAATTAAAACTTC-AAGTAT
1 TAAAAAAATTAAAA-TTCTAAGTAT
*
99153 TAAAATAAATTAAAATTCTAAGTTT
1 TAAAA-AAATTAAAATTCTAAGTAT
99178 TAAA
1 TAAA
99182 GATCAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.34
Consensus pattern (24 bp):
TAAAAAAATTAAAATTCTAAGTAT
Found at i:103513 original size:103 final size:103
Alignment explanation
Indices: 103372--103561 Score: 285
Period size: 103 Copynumber: 1.8 Consensus size: 103
103362 TAATAACCGA
* ** * *
103372 TAGAAGCTAAGTTGTACTGGTACACAACCAGTATCGATATTGGCATATAACACTGGATTACTGGT
1 TAGAAGCTAAGATGTACTGGTACACAAAAAGTATCGATACTGGCATATAACACTGGATTACGGGT
103437 TAC-TTCCAATGTATCGATACCTTTAATGTATCGATACC
66 TACATT-CAATGTATCGATACCTTTAATGTATCGATACC
*
103475 TAGAAGCTAAGATGTA-TCGGTACACAAAAAGTATCGATACTGGCATATAACACTGTATTACGGG
1 TAGAAGCTAAGATGTACT-GGTACACAAAAAGTATCGATACTGGCATATAACACTGGATTACGGG
*
103539 TTACATTCGATGTATCGATACCT
65 TTACATTCAATGTATCGATACCT
103562 AGAAGCTAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
102 1 0.01
103 75 0.96
104 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (103 bp):
TAGAAGCTAAGATGTACTGGTACACAAAAAGTATCGATACTGGCATATAACACTGGATTACGGGT
TACATTCAATGTATCGATACCTTTAATGTATCGATACC
Found at i:103562 original size:86 final size:86
Alignment explanation
Indices: 103461--103647 Score: 268
Period size: 86 Copynumber: 2.2 Consensus size: 86
103451 CGATACCTTT
* *
103461 AATGTATCGATACCTAGAAGCTAAGA-TGTATCGGTACACAAAAAGTATCGATACTGGCATATAA
1 AATGTATCGATACCTAGAAGCTAA-ACTGTACCGGTACACAAAAAGTATCGATACTGACATATAA
* * *
103525 CACTGTATTACGGGTTACATTC
65 CACTATATTACGAGTTACATCC
* * *
103547 GATGTATCGATACCTAGAAGCTAAACTGTACCGGTACACTAGAAGTATCGATACTGACATATAAC
1 AATGTATCGATACCTAGAAGCTAAACTGTACCGGTACACAAAAAGTATCGATACTGACATATAAC
*
103612 ACTATATTATGAGTTACATCC
66 ACTATATTACGAGTTACATCC
*
103633 AATATATCGATACCT
1 AATGTATCGATACCT
103648 TTAATGAATT
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 1 0.01
86 88 0.99
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (86 bp):
AATGTATCGATACCTAGAAGCTAAACTGTACCGGTACACAAAAAGTATCGATACTGACATATAAC
ACTATATTACGAGTTACATCC
Found at i:104857 original size:33 final size:37
Alignment explanation
Indices: 104773--104866 Score: 124
Period size: 37 Copynumber: 2.6 Consensus size: 37
104763 GTCCTACTAG
*
104773 GATTCAAACTCCTAAAAATAGGATATAATTTTGATAT
1 GATTCAAACTCCTAAAAATAGGATATAATGTTGATAT
*
104810 GATTCAAACTCCTAAAAATAGGATA-GA-GTT-ATAT
1 GATTCAAACTCCTAAAAATAGGATATAATGTTGATAT
* *
104844 -ATTTAAACTCCTAAAGATAGGAT
1 GATTCAAACTCCTAAAAATAGGAT
104867 CCACAAGCAT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
33 21 0.40
34 4 0.08
35 2 0.04
36 1 0.02
37 25 0.47
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.32
Consensus pattern (37 bp):
GATTCAAACTCCTAAAAATAGGATATAATGTTGATAT
Found at i:105543 original size:9 final size:9
Alignment explanation
Indices: 105529--105580 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
105519 TACATTTTTA
105529 TATTTTATT
1 TATTTTATT
*
105538 TATTTTTTAT
1 TATTTTAT-T
105548 TATTTTATT
1 TATTTTATT
**
105557 TATACTATT
1 TATTTTATT
105566 TATTTTCA-T
1 TATTTT-ATT
105575 TATTTT
1 TATTTT
105581 TTAGTTCTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
9 26 0.74
10 9 0.26
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (9 bp):
TATTTTATT
Found at i:105545 original size:19 final size:19
Alignment explanation
Indices: 105465--105559 Score: 75
Period size: 19 Copynumber: 4.8 Consensus size: 19
105455 TATATATGTA
*
105465 TATTATTTTTCATTTATTTAT
1 TATTA-TTTT-ATTTATTTTT
* *
105486 TATTATTACTATTTAGTATTT
1 TATTATT-TTATTTA-TTTTT
* ** *
105507 TATTATTATACATACATTTT
1 TATTATTTTATTTA-TTTTT
105527 TA-TATTTTATTTATTTTT
1 TATTATTTTATTTATTTTT
105545 TATTATTTTATTTAT
1 TATTATTTTATTTAT
105560 ACTATTTATT
Statistics
Matches: 58, Mismatches: 13, Indels: 8
0.73 0.16 0.10
Matches are distributed among these distances:
18 6 0.10
19 20 0.34
20 16 0.28
21 16 0.28
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.67
Consensus pattern (19 bp):
TATTATTTTATTTATTTTT
Found at i:107223 original size:34 final size:32
Alignment explanation
Indices: 107170--107239 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
107160 ACCTTACAAC
*
107170 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
*
107202 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGCTAAACTAGAACCTT
107236 TCCC
1 TCCC
107240 CTTTACAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 22 0.65
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
Found at i:107549 original size:21 final size:21
Alignment explanation
Indices: 107523--107564 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
107513 CCAGAATGGG
*
107523 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
107544 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
107565 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:107779 original size:30 final size:31
Alignment explanation
Indices: 107732--107822 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
107722 AAATTTTGAA
107732 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
107761 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
107792 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
107823 CCTTAAATTG
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.18
30 11 0.18
31 38 0.63
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.33
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:110955 original size:16 final size:15
Alignment explanation
Indices: 110934--110997 Score: 78
Period size: 16 Copynumber: 4.2 Consensus size: 15
110924 CAAAAAGGGC
110934 AAAAACAAAAAAGAA
1 AAAAACAAAAAAGAA
110949 AATAAACAAAAAAGAA
1 AA-AAACAAAAAAGAA
*
110965 GAAAA-AAAAAAGAA
1 AAAAACAAAAAAGAA
110979 CAAAAATC-AAAAAGAA
1 -AAAAA-CAAAAAAGAA
110995 AAA
1 AAA
110998 GGGACAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
14 9 0.21
15 12 0.28
16 22 0.51
ACGTcount: A:0.83, C:0.06, G:0.08, T:0.03
Consensus pattern (15 bp):
AAAAACAAAAAAGAA
Found at i:110969 original size:24 final size:23
Alignment explanation
Indices: 110934--111008 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 23
110924 CAAAAAGGGC
*
110934 AAAAACAAAAAAGAAAATA-AACA
1 AAAAACAAAAAA-AAAAAAGAACA
*
110957 AAAAAGAAGAAAAAAAAAAGAACA
1 AAAAACAA-AAAAAAAAAAGAACA
* * * *
110981 AAAATCAAAAAGAAAAAGGGACA
1 AAAAACAAAAAAAAAAAAGAACA
111004 AAAAA
1 AAAAA
111009 AGCACATGCA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
23 28 0.67
24 14 0.33
ACGTcount: A:0.80, C:0.07, G:0.11, T:0.03
Consensus pattern (23 bp):
AAAAACAAAAAAAAAAAAGAACA
Found at i:114077 original size:106 final size:106
Alignment explanation
Indices: 112589--114076 Score: 2332
Period size: 106 Copynumber: 14.0 Consensus size: 106
112579 ATATCGTGCC
* * *
112589 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGA-CGACTGGTTGTCAACAAACAACTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAACAAACAACTTCC
*
112653 CAATTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
112695 ACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCACTGGTAGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
112760 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
112801 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * *
112866 AATTTCAGAGCTAATTTCAACTTCACAACGAATGATATTAG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
112907 ACTCAAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
112972 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
113013 ACTCCAGACAATGCAAGTTCAACTTCACGATGAAGGGACCGTTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
113078 AATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
113119 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
113184 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
113225 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGATCGTTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
113290 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
113331 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
113396 AATTTCAGAGCCAATTTCAACTTCACAGCGAAAGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
113437 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* **
113502 AATTTCAGAGCCAATTTTAACTTCACAGCGAAATATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
113543 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
113608 AATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
113649 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGAGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
113714 AATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
113755 ACTCCAGACAACGCAAGTTCAACTTCACGTCAAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
113820 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
113861 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * *
113926 AATTTCGGAGCCAATTTTAACTTCACAACAAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * ** * * * * *
113967 ACTCGAGACAACACAAGTTCAACTTCACAACAAAGGGATGGCTAGTTATCAACAAATAATTTCCT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * * * *
114032 GATTCCAGATCCAATTTTAACTTTAC-GACGGAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGG
114073 ACTC
1 ACTC
114077 GGAACAATGC
Statistics
Matches: 1283, Mismatches: 97, Indels: 4
0.93 0.07 0.00
Matches are distributed among these distances:
106 1282 1.00
107 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:115333 original size:4 final size:4
Alignment explanation
Indices: 115288--115353 Score: 55
Period size: 4 Copynumber: 16.5 Consensus size: 4
115278 TTAACCCTTA
* * * * *
115288 TTAT TTAT ATGTAT ATAT GTAT ATAT TTAA TTAT AT-T TTAT TTAT TTAT
1 TTAT TTAT -T-TAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
115337 TTA- TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TT
115354 TTCTTTGCGT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
3 5 0.10
4 41 0.82
5 1 0.02
6 3 0.06
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (4 bp):
TTAT
Found at i:115450 original size:12 final size:12
Alignment explanation
Indices: 115433--115457 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
115423 TGTTTACTTA
115433 TTTACTATATTT
1 TTTACTATATTT
115445 TTTACTATATTT
1 TTTACTATATTT
115457 T
1 T
115458 CCTAACGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTACTATATTT
Found at i:115601 original size:28 final size:29
Alignment explanation
Indices: 115570--115644 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
115560 TATTATTACT
*
115570 ATTTAGTATTTTATTATAT-TATACATAA
1 ATTTATTATTTTATTATATATATACATAA
* *
115598 ATTT-TTATATTTA-TATATATATATATAT
1 ATTTATTAT-TTTATTATATATATACATAA
115626 ATTTATTATTTTATT-TATA
1 ATTTATTATTTTATTATATA
115645 CTATTTATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
27 8 0.20
28 27 0.68
29 5 0.12
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (29 bp):
ATTTATTATTTTATTATATATATACATAA
Found at i:121777 original size:23 final size:23
Alignment explanation
Indices: 121719--121777 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
121709 TAGCACTTTG
* *
121719 GTGCATTTCTACGTGGCAGTACA
1 GTGCATTTCTACGTGCCACTACA
* * *
121742 GTGTAATTCTACGTGCCACTTCA
1 GTGCATTTCTACGTGCCACTACA
*
121765 GTGCATTTATACG
1 GTGCATTTCTACG
121778 AGCTGTGGTG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (23 bp):
GTGCATTTCTACGTGCCACTACA
Found at i:127369 original size:39 final size:37
Alignment explanation
Indices: 127309--127389 Score: 85
Period size: 39 Copynumber: 2.1 Consensus size: 37
127299 AATGTATGTA
*
127309 ATATATGTATATGATGTGTGATATGAAT-TGTATGACATG
1 ATATATGTATATGATGGGTGAT-TGAATCTGT-T-ACATG
* *
127348 ATATATGTGTGAT-ATGGGTGATTGCATCTGTTACATG
1 ATATATGTAT-ATGATGGGTGATTGAATCTGTTACATG
127385 ATATA
1 ATATA
127390 CATGAATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
37 10 0.27
38 5 0.14
39 20 0.54
40 2 0.05
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.41
Consensus pattern (37 bp):
ATATATGTATATGATGGGTGATTGAATCTGTTACATG
Found at i:137353 original size:26 final size:26
Alignment explanation
Indices: 137315--137396 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
137305 GGCCGTAAGT
*
137315 GAGACGAGATAGATCGTGAGTTACTC
1 GAGACGAGATAGATCGTGAGCTACTC
* *
137341 GAGATGAGGTAGATCGTGAGCTACTC
1 GAGACGAGATAGATCGTGAGCTACTC
*
137367 GAGACGAGACAGATCGTGAGCTACTC
1 GAGACGAGATAGATCGTGAGCTACTC
137393 GAGA
1 GAGA
137397 TCGACTCGGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.30, C:0.17, G:0.33, T:0.20
Consensus pattern (26 bp):
GAGACGAGATAGATCGTGAGCTACTC
Found at i:139993 original size:24 final size:22
Alignment explanation
Indices: 139966--140011 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
139956 ATATAAATAA
139966 TATTTTAATTATAATTATATTTTT
1 TATTTTAATT-T-ATTATATTTTT
* *
139990 TATTTTCATTTTTTATATTTTT
1 TATTTTAATTTATTATATTTTT
140012 ATTATAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 1 0.05
24 9 0.45
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (22 bp):
TATTTTAATTTATTATATTTTT
Found at i:140348 original size:15 final size:16
Alignment explanation
Indices: 140329--140365 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
140319 ATTTATAAAA
140329 AAATAATATATAATTT
1 AAATAATATATAATTT
*
140345 -AATAA-ATATCATTT
1 AAATAATATATAATTT
140359 AAATAAT
1 AAATAAT
140366 TAAATAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 4
0.78 0.04 0.17
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATAATATATAATTT
Found at i:140390 original size:31 final size:31
Alignment explanation
Indices: 140329--140398 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 31
140319 ATTTATAAAA
* * **
140329 AAATAA-TATATAATTTAATAAATATCATTT
1 AAATAATTAAATAATCTAATAAATAAAATTT
*
140359 AAATAATTAAATAATCTAATTAATAAAATTT
1 AAATAATTAAATAATCTAATAAATAAAATTT
*
140390 AGAT-ATTAA
1 AAATAATTAA
140399 CAATCAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 11 0.33
31 22 0.67
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (31 bp):
AAATAATTAAATAATCTAATAAATAAAATTT
Found at i:143861 original size:2 final size:2
Alignment explanation
Indices: 143854--143906 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
143844 AAAGCAGGGA
143854 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
143896 AG AG AG AG AG A
1 AG AG AG AG AG A
143907 TAGTAGGTAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:148321 original size:20 final size:22
Alignment explanation
Indices: 148293--148336 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
148283 GCAGCAAGTG
*
148293 CATTAGAAAAAG-AGGGGAAAA
1 CATTAGAAAAAGAAAGGGAAAA
*
148314 CATT-GAAACAGAAAGGGAAAA
1 CATTAGAAAAAGAAAGGGAAAA
148335 CA
1 CA
148337 AGAGGATGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.57, C:0.09, G:0.25, T:0.09
Consensus pattern (22 bp):
CATTAGAAAAAGAAAGGGAAAA
Found at i:150361 original size:112 final size:112
Alignment explanation
Indices: 150218--150789 Score: 846
Period size: 112 Copynumber: 5.1 Consensus size: 112
150208 TTGTCGGTTT
* * * * *
150218 GTGTCGATACTTTATAAAAATATATTGATCCATAATAATATAACAAGTAAACAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
150283 AGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* * * *
150330 GTGTTGATACTTTATAAAAATGTATCTATCCATAACAATAT-A-ATGTAAAAAAATGACAAAATC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* * *
150393 -GTCTATAAATGACAAAACAAGTAAAACGCTACTGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
*
150439 GTGTCGATAC-TTATAAAAAATGTATCGATCCATAACAATATAACAGGTAAAATAATGACAAAAC
1 GTGTCGATACTTTAT-AAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAAC
*
150503 CGGTCTATTAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
65 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
** *
150551 GTGTCGATACTTTATAAAAATGTATCGATCTTTAATAATATAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* * *
150616 GGTCTATAAATGACAAAACATGTAAAGCGCTACCGGATATGTTGATA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* * *
150663 GTGTCGATATTTTATAAAAATGTATCGATCTATAACAATAAAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
** * * *
150728 GGTCTATAAATGACAAAACAGGTAAAATGCTACCAGATATGTTGATA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
150775 GTGTCGATACTTTAT
1 GTGTCGATACTTTAT
150790 TATAAGTATC
Statistics
Matches: 418, Mismatches: 37, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
108 4 0.01
109 77 0.18
110 19 0.05
111 19 0.05
112 295 0.71
113 4 0.01
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (112 bp):
GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
Found at i:152487 original size:28 final size:31
Alignment explanation
Indices: 152439--152508 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 31
152429 AATGATTGTT
*
152439 TAATTATTATATTTTAAAAAA-A-TATA-AA
1 TAATTATTATACTTTAAAAAATATTATACAA
*
152467 TAATTATTA-ACTTTATCAAAATATTATACAA
1 TAATTATTATACTTTA-AAAAATATTATACAA
*
152498 TAATCATTATA
1 TAATTATTATA
152509 ATATTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 5 0.15
28 13 0.38
29 1 0.03
30 4 0.12
31 10 0.29
32 1 0.03
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (31 bp):
TAATTATTATACTTTAAAAAATATTATACAA
Found at i:152690 original size:31 final size:30
Alignment explanation
Indices: 152655--152726 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 30
152645 TATGAAAGTG
152655 TTATTAAATTAATCAAAGA-ATTATAAAATAA
1 TTATTAAATT-ATCAAA-ATATTATAAAATAA
*
152686 TTATTAAAATTATCAAAATATTATAAATTAA
1 TTATT-AAATTATCAAAATATTATAAAATAA
*
152717 TTACTAAATT
1 TTATTAAATT
152727 TGTTAAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
30 6 0.16
31 26 0.70
32 5 0.14
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (30 bp):
TTATTAAATTATCAAAATATTATAAAATAA
Found at i:153627 original size:54 final size:54
Alignment explanation
Indices: 153563--153670 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
153553 AGACCACCAG
153563 CTGCAGTCGCAACACTCTAACCGCAGTCGCGTCAGTTTCGCCGCCGCTGCTAAC
1 CTGCAGTCGCAACACTCTAACCGCAGTCGCGTCAGTTTCGCCGCCGCTGCTAAC
153617 CTGCAGTCGCAACACTCTAACCGCAGTCGCGTCAGTTTCGCCGCCGCTGCTAAC
1 CTGCAGTCGCAACACTCTAACCGCAGTCGCGTCAGTTTCGCCGCCGCTGCTAAC
153671 ACCAAGCGCG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.19, C:0.39, G:0.22, T:0.20
Consensus pattern (54 bp):
CTGCAGTCGCAACACTCTAACCGCAGTCGCGTCAGTTTCGCCGCCGCTGCTAAC
Found at i:162011 original size:20 final size:22
Alignment explanation
Indices: 161986--162029 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
161976 CACCCGCAAC
161986 ATCCATCCACCCAT-TA-ATAT
1 ATCCATCCACCCATATATATAT
*
162006 ATCCATCCATCCATATATATAT
1 ATCCATCCACCCATATATATAT
162028 AT
1 AT
162030 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.62
21 2 0.10
22 6 0.29
ACGTcount: A:0.36, C:0.30, G:0.00, T:0.34
Consensus pattern (22 bp):
ATCCATCCACCCATATATATAT
Found at i:162023 original size:2 final size:2
Alignment explanation
Indices: 162018--162067 Score: 77
Period size: 2 Copynumber: 26.0 Consensus size: 2
162008 CCATCCATCC
*
162018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AG AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
162058 AT AT AT AT AT
1 AT AT AT AT AT
162068 TAAAAAAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:162413 original size:17 final size:17
Alignment explanation
Indices: 162364--162413 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
162354 TTGTTCATGT
162364 TTTGGTTTCTATGAATG
1 TTTGGTTTCTATGAATG
*
162381 TTTGAG----TATCAATG
1 TTTG-GTTTCTATGAATG
162395 TTTGGTTTCTATGAATG
1 TTTGGTTTCTATGAATG
162412 TT
1 TT
162414 AGAAGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
13 1 0.04
14 11 0.42
17 13 0.50
18 1 0.04
ACGTcount: A:0.20, C:0.06, G:0.22, T:0.52
Consensus pattern (17 bp):
TTTGGTTTCTATGAATG
Found at i:162522 original size:15 final size:16
Alignment explanation
Indices: 162495--162525 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
162485 CGCTCCACCC
162495 GCGGATGATGGATGAA
1 GCGGATGATGGATGAA
162511 GCGGAT-ATGGATGAA
1 GCGGATGATGGATGAA
162526 ATTTTTGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.32, C:0.06, G:0.42, T:0.19
Consensus pattern (16 bp):
GCGGATGATGGATGAA
Found at i:167874 original size:11 final size:10
Alignment explanation
Indices: 167852--167911 Score: 66
Period size: 10 Copynumber: 5.8 Consensus size: 10
167842 CATTTTTTTT
167852 TAAAAATAAA
1 TAAAAATAAA
167862 TAAAAATACAA
1 TAAAAATA-AA
*
167873 TAAAAATGAAT
1 TAAAAAT-AAA
*
167884 TAAAAATGAA
1 TAAAAATAAA
* *
167894 TAAAATTCAA
1 TAAAAATAAA
167904 TAAAAATA
1 TAAAAATA
167912 TATTGTAAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 23 0.56
11 17 0.41
12 1 0.02
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.23
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:167876 original size:21 final size:21
Alignment explanation
Indices: 167852--167911 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
167842 CATTTTTTTT
167852 TAAAAATAAATAAAAATACAA
1 TAAAAATAAATAAAAATACAA
* *
167873 TAAAAATGAATTAAAAAT-GAA
1 TAAAAAT-AAATAAAAATACAA
* *
167894 TAAAATTCAATAAAAATA
1 TAAAAATAAATAAAAATA
167912 TATTGTAAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 8 0.25
21 15 0.47
22 9 0.28
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.23
Consensus pattern (21 bp):
TAAAAATAAATAAAAATACAA
Found at i:168513 original size:26 final size:27
Alignment explanation
Indices: 168472--168523 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
168462 AAGTCAATAG
168472 ATTTTTTAAAAATATATAAA-ATTTATA
1 ATTTTTTAAAAATATA-AAATATTTATA
*
168499 ATTTTTT-AAATTATAAAATATTTAT
1 ATTTTTTAAAAATATAAAATATTTAT
168524 CATCATCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 3 0.13
26 13 0.57
27 7 0.30
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (27 bp):
ATTTTTTAAAAATATAAAATATTTATA
Found at i:170076 original size:21 final size:20
Alignment explanation
Indices: 170029--170067 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
170019 TTTTTATTTT
170029 TTTAA-TTT-TTTTAAGAAA
1 TTTAATTTTCTTTTAAGAAA
170047 TTTAATTTTCTTTTAA-AAA
1 TTTAATTTTCTTTTAAGAAA
170066 TT
1 TT
170068 AATAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 8 0.42
20 6 0.32
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTAATTTTCTTTTAAGAAA
Found at i:173715 original size:14 final size:14
Alignment explanation
Indices: 173696--173735 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
173686 ACTTTCGTTT
173696 TTTATTTTATATTA
1 TTTATTTTATATTA
*
173710 TTTATTTTATTTTA
1 TTTATTTTATATTA
173724 -TTATTATTATAT
1 TTTATT-TTATAT
173736 ATACATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTATTTTATATTA
Found at i:173717 original size:20 final size:20
Alignment explanation
Indices: 173695--173731 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
173685 TACTTTCGTT
173695 TTTTATTTTA-TATTATTTA
1 TTTTATTTTATTATTATTTA
173714 TTTTATTTTATTATTATT
1 TTTTATTTTATTATTATT
173732 ATATATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTATTTTATTATTATTTA
Found at i:173814 original size:21 final size:21
Alignment explanation
Indices: 173764--173805 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
173754 ATCTAATTTC
173764 TTTTAT-TTT-TATTCTCCAT
1 TTTTATCTTTCTATTCTCCAT
173783 TTTTATCTTTCTATTCTCC-T
1 TTTTATCTTTCTATTCTCCAT
173803 TTT
1 TTT
173806 GTTTGTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 7 0.33
21 8 0.38
ACGTcount: A:0.12, C:0.19, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTATCTTTCTATTCTCCAT
Found at i:184290 original size:1 final size:1
Alignment explanation
Indices: 184284--184360 Score: 64
Period size: 1 Copynumber: 77.0 Consensus size: 1
184274 TCCTAAGTTG
* * ** * * * * *
184284 AAAAAAAAACAAAAAAAAAACAAAAAAAAACGAAAAAAACAAAAACAAAAACAAAAACAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
184349 AAAAAACAAAAA
1 AAAAAAAAAAAA
184361 GAGAATAAAA
Statistics
Matches: 57, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 57 1.00
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (1 bp):
A
Found at i:184299 original size:7 final size:7
Alignment explanation
Indices: 184287--184360 Score: 84
Period size: 7 Copynumber: 10.7 Consensus size: 7
184277 TAAGTTGAAA
184287 AAAAAAC
1 AAAAAAC
184294 AAAAAA-
1 AAAAAAC
*
184300 AAAACAAA
1 AAAA-AAC
184308 AAAAAAC
1 AAAAAAC
184315 GAAAAAA-
1 -AAAAAAC
184322 ACAAAAAC
1 A-AAAAAC
184330 -AAAAAC
1 AAAAAAC
184336 -AAAAAC
1 AAAAAAC
184342 AAAAAAC
1 AAAAAAC
184349 AAAAAAC
1 AAAAAAC
184356 AAAAA
1 AAAAA
184361 GAGAATAAAA
Statistics
Matches: 60, Mismatches: 1, Indels: 12
0.82 0.01 0.16
Matches are distributed among these distances:
6 17 0.28
7 33 0.55
8 10 0.17
ACGTcount: A:0.86, C:0.12, G:0.01, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:184301 original size:12 final size:12
Alignment explanation
Indices: 184284--184360 Score: 86
Period size: 12 Copynumber: 6.2 Consensus size: 12
184274 TCCTAAGTTG
184284 AAAAAAAAAC-A
1 AAAAAAAAACAA
184295 AAAAAAAAACAA
1 AAAAAAAAACAA
184307 AAAAAAACGAA-AA
1 AAAAAAA--AACAA
*
184320 AAACAAAAACAA
1 AAAAAAAAACAA
*
184332 AAACAAAAACAAA
1 AAAAAAAAAC-AA
184345 AAACAAAAAACAA
1 AAA-AAAAAACAA
184358 AAA
1 AAA
184361 GAGAATAAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
11 12 0.21
12 20 0.34
13 18 0.31
14 8 0.14
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:184310 original size:19 final size:18
Alignment explanation
Indices: 184287--184359 Score: 96
Period size: 19 Copynumber: 3.9 Consensus size: 18
184277 TAAGTTGAAA
184287 AAAAAACAAAAAAAAAAC
1 AAAAAACAAAAAAAAAAC
184305 AAAAAA-AAACGAAAAAAAC
1 AAAAAACAAA--AAAAAAAC
184324 -AAAAACAAAAACAAAAAC
1 AAAAAACAAAAA-AAAAAC
184342 AAAAAACAAAAAACAAAA
1 AAAAAACAAAAAA-AAAA
184360 AGAGAATAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.10
18 18 0.37
19 26 0.53
ACGTcount: A:0.86, C:0.12, G:0.01, T:0.00
Consensus pattern (18 bp):
AAAAAACAAAAAAAAAAC
Found at i:184322 original size:25 final size:24
Alignment explanation
Indices: 184284--184360 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 24
184274 TCCTAAGTTG
*
184284 AAAAAAA-AACAAAAAAAAAACAA
1 AAAAAAACAAAAAAAAAAAAACAA
*
184307 AAAAAAACGAAAAAAACAAAAACAAA
1 AAAAAAAC-AAAAAAAAAAAAAC-AA
*
184333 AACAAAAACAAAAAACAAAAAACAA
1 AA-AAAAACAAAAAAAAAAAAACAA
184358 AAA
1 AAA
184361 GAGAATAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
23 7 0.15
24 1 0.02
25 16 0.35
26 16 0.35
27 6 0.13
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (24 bp):
AAAAAAACAAAAAAAAAAAAACAA
Found at i:185307 original size:105 final size:105
Alignment explanation
Indices: 185120--185995 Score: 1513
Period size: 105 Copynumber: 8.3 Consensus size: 105
185110 AGGTTTTACC
* * *
185120 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCATG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
185185 ACGAAGGGACCGTTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
* *
185225 TAGAGCCAATTTCAACTTCACATCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
185290 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
185330 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
185395 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAGATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
* * *
185435 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGATAATGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
185500 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAGATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
* *
185540 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
185605 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
185645 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGC-AGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
185709 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAGATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
* *
185749 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
185814 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
185854 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT-CATGACAACGCAAGTTCAACTTCAC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA-GACAACGCAAGTTCAACTTCAC
* *
185918 GACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTT
65 GACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAAATT
* * * *
185960 CGGAACCAATTTCAACTTCATAGCGAAGGATATTGG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
185996 TCTCGAAACA
Statistics
Matches: 741, Mismatches: 27, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
104 103 0.14
105 595 0.80
106 43 0.06
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
Found at i:187700 original size:13 final size:13
Alignment explanation
Indices: 187684--187721 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
187674 ACTTTCGTTT
187684 TTATTTTATATTA
1 TTATTTTATATTA
*
187697 TTATTTTATTTTA
1 TTATTTTATATTA
187710 TTATTATTATAT
1 TTATT-TTATAT
187722 ACATATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTATATTA
Found at i:187713 original size:16 final size:18
Alignment explanation
Indices: 187682--187719 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
187672 TTACTTTCGT
187682 TTTTATTTTATATTATTA
1 TTTTATTTTATATTATTA
187700 TTTTATTTTATTATTATTA
1 TTTTATTTTA-TATTATTA
187719 T
1 T
187720 ATACATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTATTTTATATTATTA
Found at i:189260 original size:96 final size:96
Alignment explanation
Indices: 189096--189288 Score: 359
Period size: 96 Copynumber: 2.0 Consensus size: 96
189086 GTGAGTGTTT
189096 TGTAAACACCTGTAAATTTTCTCTCTTTAGTAAAAGATCTGCAACAGTCCGAAGACGTAGGCAAA
1 TGTAAACACCTGTAAATTTTCTCTCTTTAGTAAAAGATCTGCAACAGTCCGAAGACGTAGGCAAA
* * *
189161 ATTGGTTGAACTCTGTTATCAATTTCGGGTA
66 ATTGGTTAAACTCCGTTATCAATTCCGGGTA
189192 TGTAAACACCTGTAAATTTTCTCTCTTTAGTAAAAGATCTGCAACAGTCCGAAGACGTAGGCAAA
1 TGTAAACACCTGTAAATTTTCTCTCTTTAGTAAAAGATCTGCAACAGTCCGAAGACGTAGGCAAA
189257 ATTGGTTAAACTCCGTTATCAATTCCGGGTA
66 ATTGGTTAAACTCCGTTATCAATTCCGGGTA
189288 T
1 T
189289 TATTTTTCCG
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 94 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (96 bp):
TGTAAACACCTGTAAATTTTCTCTCTTTAGTAAAAGATCTGCAACAGTCCGAAGACGTAGGCAAA
ATTGGTTAAACTCCGTTATCAATTCCGGGTA
Found at i:195722 original size:39 final size:39
Alignment explanation
Indices: 195678--195755 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
195668 CTAAAATCCC
195678 TCCATTGTTTATCTATTGCTTAATCTGTGTGCATGAGGT
1 TCCATTGTTTATCTATTGCTTAATCTGTGTGCATGAGGT
195717 TCCATTGTTTATCTATTGCTTAATCTGTGTGCATGAGGT
1 TCCATTGTTTATCTATTGCTTAATCTGTGTGCATGAGGT
195756 GGTTTACAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.18, C:0.15, G:0.21, T:0.46
Consensus pattern (39 bp):
TCCATTGTTTATCTATTGCTTAATCTGTGTGCATGAGGT
Found at i:198775 original size:18 final size:18
Alignment explanation
Indices: 198752--198805 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 18
198742 AGGGATTATC
198752 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
* *
198770 AGTGGTCATTCGGGACAC
1 AGTGGTCCTTCGGGACAT
198788 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
198806 GAGCTGTGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.19, C:0.22, G:0.33, T:0.26
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:199731 original size:21 final size:21
Alignment explanation
Indices: 199697--199736 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
199687 AGTCGTATAT
199697 AGCCGTTGGAGATG-TTTTGG
1 AGCCGTTGGAGATGATTTTGG
*
199717 AGCCGTTTGGGGATGATTTT
1 AGCCG-TTGGAGATGATTTT
199737 TCTACTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 8 0.47
22 4 0.24
ACGTcount: A:0.15, C:0.10, G:0.38, T:0.38
Consensus pattern (21 bp):
AGCCGTTGGAGATGATTTTGG
Found at i:199791 original size:21 final size:21
Alignment explanation
Indices: 199765--199806 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
199755 CCACGATAGG
199765 GGGTATC-GATACCCCTTCATA
1 GGGTATCAG-TACCCCTTCATA
*
199786 GGGTATCAGTACTCCTTCATA
1 GGGTATCAGTACCCCTTCATA
199807 AAATTCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (21 bp):
GGGTATCAGTACCCCTTCATA
Found at i:201879 original size:21 final size:21
Alignment explanation
Indices: 201854--201894 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
201844 CACGATAGGG
*
201854 GGGTATCGGTACCCCTTCATT
1 GGGTATCAGTACCCCTTCATT
*
201875 GGGTATCAGTACTCCTTCAT
1 GGGTATCAGTACCCCTTCAT
201895 AAAATTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.27, G:0.22, T:0.34
Consensus pattern (21 bp):
GGGTATCAGTACCCCTTCATT
Found at i:201966 original size:14 final size:14
Alignment explanation
Indices: 201947--201974 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
201937 TACCCCTGGG
201947 GGTATCGATACCAT
1 GGTATCGATACCAT
201961 GGTATCGATACCAT
1 GGTATCGATACCAT
201975 TGGGGGTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (14 bp):
GGTATCGATACCAT
Found at i:201988 original size:18 final size:17
Alignment explanation
Indices: 201926--201988 Score: 60
Period size: 18 Copynumber: 3.8 Consensus size: 17
201916 GTTGCAGCCA
*
201926 GGGGGTATAGATACCCCT
1 GGGGGTATAGATA-CCAT
*
201944 GGGGGTATCGATACCAT
1 GGGGGTATAGATACCAT
*
201961 ---GGTATCGATACCATT
1 GGGGGTATAGATACCA-T
201976 GGGGGTATAGATA
1 GGGGGTATAGATA
201989 TCATCCGAGC
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 13 0.34
15 1 0.03
17 3 0.08
18 21 0.55
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (17 bp):
GGGGGTATAGATACCAT
Found at i:209396 original size:29 final size:29
Alignment explanation
Indices: 209375--209431 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
209365 AAACTTTGAA
209375 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
209404 TAAATTCAATTCAAGTCCAAAAACATTT
1 TAAATTCAATTCAAGTCCAAAAACATTT
209432 TGCCTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:209422 original size:30 final size:29
Alignment explanation
Indices: 209375--209433 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 29
209365 AAACTTTGAA
209375 TAAATTCAATTAAGTCCAAAAACATTTTG
1 TAAATTCAATTAAGTCCAAAAACATTTTG
209404 TAAATTCAATTCAAGTCCAAAAACATTTTG
1 TAAATTCAATT-AAGTCCAAAAACATTTTG
209434 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (29 bp):
TAAATTCAATTAAGTCCAAAAACATTTTG
Found at i:212369 original size:20 final size:19
Alignment explanation
Indices: 212344--212402 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
212334 GCTGCTGGAA
*
212344 AACCGGTTTGACCAGTTTTG
1 AACCGGTTTGACC-GGTTTG
212364 AACCGGTTTGACCGGTTTG
1 AACCGGTTTGACCGGTTTG
*
212383 -ACCGGTTCGAACCGGTTTG
1 AACCGGTTTG-ACCGGTTTG
212402 A
1 A
212403 TCGGTCTGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.23
19 14 0.40
20 13 0.37
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.31
Consensus pattern (19 bp):
AACCGGTTTGACCGGTTTG
Found at i:212377 original size:9 final size:9
Alignment explanation
Indices: 212345--212423 Score: 77
Period size: 9 Copynumber: 8.3 Consensus size: 9
212335 CTGCTGGAAA
212345 ACCGGTTTG
1 ACCGGTTTG
*
212354 ACCAGTTTTG
1 ACC-GGTTTG
212364 AACCGGTTTG
1 -ACCGGTTTG
212374 ACCGGTTTG
1 ACCGGTTTG
*
212383 ACCGGTTCG
1 ACCGGTTTG
212392 AACCGGTTTG
1 -ACCGGTTTG
* *
212402 ATCGGTCTGG
1 ACCGGT-TTG
*
212412 ACCGGTCTG
1 ACCGGTTTG
212421 ACC
1 ACC
212424 CGACCCGTCT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
9 29 0.51
10 25 0.44
11 3 0.05
ACGTcount: A:0.15, C:0.25, G:0.30, T:0.29
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:212396 original size:19 final size:18
Alignment explanation
Indices: 212345--212423 Score: 68
Period size: 19 Copynumber: 4.2 Consensus size: 18
212335 CTGCTGGAAA
* *
212345 ACCGGTTTGACCAGTTTTG
1 ACCGGTTCGACC-GGTTTG
*
212364 AACCGGTTTGACCGGTTTG
1 -ACCGGTTCGACCGGTTTG
212383 ACCGGTTCGAACCGGTTTG
1 ACCGGTTCG-ACCGGTTTG
* * *
212402 ATCGGTCTGGACCGGTCTG
1 ACCGGT-TCGACCGGTTTG
212421 ACC
1 ACC
212424 CGACCCGTCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
18 8 0.16
19 29 0.57
20 14 0.27
ACGTcount: A:0.15, C:0.25, G:0.30, T:0.29
Consensus pattern (18 bp):
ACCGGTTCGACCGGTTTG
Found at i:212433 original size:14 final size:14
Alignment explanation
Indices: 212411--212458 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
212401 GATCGGTCTG
*
212411 GACCGGTCTGACCC
1 GACCCGTCTGACCC
212425 GACCCGTCTGACCC
1 GACCCGTCTGACCC
* *
212439 GACCTGACTGACCC
1 GACCCGTCTGACCC
212453 GACCCG
1 GACCCG
212459 ACCGTTGACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.17, C:0.46, G:0.25, T:0.12
Consensus pattern (14 bp):
GACCCGTCTGACCC
Found at i:212470 original size:7 final size:7
Alignment explanation
Indices: 212458--212495 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
212448 GACCCGACCC
212458 GACCGTT
1 GACCGTT
212465 GACCGTT
1 GACCGTT
*
212472 GACCATT
1 GACCGTT
212479 GACCGTT
1 GACCGTT
*
212486 GACCATT
1 GACCGTT
212493 GAC
1 GAC
212496 TTTCTTTGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (7 bp):
GACCGTT
Found at i:212475 original size:14 final size:14
Alignment explanation
Indices: 212458--212495 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
212448 GACCCGACCC
*
212458 GACCGTTGACCGTT
1 GACCATTGACCGTT
212472 GACCATTGACCGTT
1 GACCATTGACCGTT
212486 GACCATTGAC
1 GACCATTGAC
212496 TTTCTTTGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (14 bp):
GACCATTGACCGTT
Found at i:213433 original size:63 final size:63
Alignment explanation
Indices: 213365--213488 Score: 171
Period size: 63 Copynumber: 2.0 Consensus size: 63
213355 CTAATGTGAC
* * *
213365 TCTTAGGTAGGCTCTACGGCCCTGAGATC-ATTCTCGGGTAGGCCCTGC-GGCCCTAAGATGTGT
1 TCTTAGGTAGGCCCTACGGCCCCGAAATCTA-TCTCGGGTAGGCCCT-CAGGCCCTAAGATGTGT
* *
213428 TCTTAGGTAGGCCCTACGGCCCCGAAATCTATCTTGGGTAGGCTCTCAGGCCCTAAGATGT
1 TCTTAGGTAGGCCCTACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGT
213489 TCCCTTAGGG
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
62 1 0.02
63 52 0.96
64 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.28, T:0.27
Consensus pattern (63 bp):
TCTTAGGTAGGCCCTACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGTGT
Found at i:213439 original size:32 final size:31
Alignment explanation
Indices: 213365--213449 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
213355 CTAATGTGAC
* *
213365 TCTTAGGTAGGCTCTACGGCCCTGAGATCAT
1 TCTTAGGTAGGCCCTACGGCCCTAAGATCAT
** * **
213396 TCTCGGGTAGGCCCTGCGGCCCTAAGATGTGT
1 TCTTAGGTAGGCCCTACGGCCCTAAGAT-CAT
213428 TCTTAGGTAGGCCCTACGGCCC
1 TCTTAGGTAGGCCCTACGGCCC
213450 CGAAATCTAT
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
31 23 0.53
32 20 0.47
ACGTcount: A:0.15, C:0.29, G:0.29, T:0.26
Consensus pattern (31 bp):
TCTTAGGTAGGCCCTACGGCCCTAAGATCAT
Found at i:216810 original size:35 final size:36
Alignment explanation
Indices: 216753--216823 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 36
216743 ATCATCCACT
* ** *
216753 AAATATATATTTATTGACATTAAG-ATGTGAATTAC
1 AAATATATATATATACACATTAAGAATGAGAATTAC
*
216788 AAATATATATATATACATATTAAGAATGAGAATTAC
1 AAATATATATATATACACATTAAGAATGAGAATTAC
216824 TCCTTATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 20 0.67
36 10 0.33
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.37
Consensus pattern (36 bp):
AAATATATATATATACACATTAAGAATGAGAATTAC
Found at i:219086 original size:19 final size:19
Alignment explanation
Indices: 219050--219089 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
219040 ATACAATCAA
*
219050 ATTTTATTTTATTTATATT
1 ATTTTATTTTATTCATATT
219069 ATTTTATTTT-TTCCATATT
1 ATTTTATTTTATT-CATATT
219088 AT
1 AT
219090 ACTAATAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTATTTTATTCATATT
Found at i:221488 original size:28 final size:30
Alignment explanation
Indices: 221458--221514 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
221448 GCTACAATTA
*
221458 TTTTTT-ATAATTGTTATTAGGGGTTTAAT
1 TTTTTTAATAATTATTATTAGGGGTTTAAT
*
221487 TTTTTTCAATATTTATTATTAGGGGTTT
1 TTTTTT-AATAATTATTATTAGGGGTTT
221515 GCTCTTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.25
31 18 0.75
ACGTcount: A:0.23, C:0.02, G:0.16, T:0.60
Consensus pattern (30 bp):
TTTTTTAATAATTATTATTAGGGGTTTAAT
Found at i:222309 original size:31 final size:32
Alignment explanation
Indices: 222258--222328 Score: 117
Period size: 31 Copynumber: 2.2 Consensus size: 32
222248 CTTTTAAAAC
*
222258 TTGCAATACAGTCCCCCCAACATTTAGTCCAT
1 TTGCAATACAATCCCCCCAACATTTAGTCCAT
*
222290 TTGCAATACAAT-CCCCCAACATTTAGTCCGT
1 TTGCAATACAATCCCCCCAACATTTAGTCCAT
222321 TTGCAATA
1 TTGCAATA
222329 TGGTCCCCGA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
31 26 0.70
32 11 0.30
ACGTcount: A:0.30, C:0.31, G:0.10, T:0.30
Consensus pattern (32 bp):
TTGCAATACAATCCCCCCAACATTTAGTCCAT
Found at i:224659 original size:2 final size:2
Alignment explanation
Indices: 224590--224649 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
224580 TATGTCCGTC
224590 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
224632 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
224650 ACGGATATAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:225939 original size:38 final size:38
Alignment explanation
Indices: 225878--225965 Score: 135
Period size: 38 Copynumber: 2.3 Consensus size: 38
225868 TTTATTTTGT
*
225878 TCGGGTCGTG-TTTTTTAAGTGTGATATTCGGGTC-GAG
1 TCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCAG-G
225915 TCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCAGG
1 TCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCAGG
*
225953 TCAGGTCGGGTTT
1 TCGGGTCGGGTTT
225966 AGGGTGAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
37 9 0.19
38 37 0.79
39 1 0.02
ACGTcount: A:0.12, C:0.11, G:0.36, T:0.40
Consensus pattern (38 bp):
TCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCAGG
Found at i:226569 original size:18 final size:18
Alignment explanation
Indices: 226531--226614 Score: 109
Period size: 18 Copynumber: 4.7 Consensus size: 18
226521 ATATAGAATT
* *
226531 AGATTCCAATT-ATTGAC
1 AGATTCCAATTCCTTCAC
226548 AGATTCCAATTCCTTCAC
1 AGATTCCAATTCCTTCAC
*
226566 AGATTCTAATT-CTCTCAC
1 AGATTCCAATTCCT-TCAC
*
226584 AGATTCCAATTCCCTCAC
1 AGATTCCAATTCCTTCAC
226602 AGATTCCAATTCC
1 AGATTCCAATTCC
226615 ATCGTAAACA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
17 13 0.22
18 45 0.76
19 1 0.02
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (18 bp):
AGATTCCAATTCCTTCAC
Found at i:227852 original size:2 final size:2
Alignment explanation
Indices: 227845--227871 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
227835 TTTAGACACC
227845 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
227872 ATTATTACGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:228187 original size:16 final size:17
Alignment explanation
Indices: 228160--228201 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
228150 ATTATTAATA
228160 AATATATATTATTTTTT
1 AATATATATTATTTTTT
*
228177 AA-ATATGTTATTTTTT
1 AATATATATTATTTTTT
228193 AATATATAT
1 AATATATAT
228202 ATATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
AATATATATTATTTTTT
Found at i:228601 original size:4 final size:4
Alignment explanation
Indices: 228592--228688 Score: 51
Period size: 4 Copynumber: 25.0 Consensus size: 4
228582 TTTCCTCATC
* * * *
228592 TTAT TTAT TTAG TTAT CTAT TTAT TTA- TT-T TTCT TTA- TT-T TTCT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
* * * * **
228636 TTAT CT-T TGAT TTAT TTACT CATAT TTGT TTAT TTAT TTAT CCAT TTAT
1 TTAT TTAT TTAT TTAT TTA-T -TTAT TTAT TTAT TTAT TTAT TTAT TTAT
228685 TTAT
1 TTAT
228689 GTATGTTGTC
Statistics
Matches: 68, Mismatches: 18, Indels: 14
0.68 0.18 0.14
Matches are distributed among these distances:
3 9 0.13
4 55 0.81
5 2 0.03
6 2 0.03
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (4 bp):
TTAT
Found at i:228630 original size:10 final size:10
Alignment explanation
Indices: 228615--228639 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
228605 TATCTATTTA
228615 TTTATTTTTC
1 TTTATTTTTC
228625 TTTATTTTTC
1 TTTATTTTTC
228635 TTTAT
1 TTTAT
228640 CTTTGATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTATTTTTC
Done.