genome.fa.s8491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008491.1 Hibiscus syriacus cultivar Beakdansim tig00111333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44953

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1423--1635	49	4.4	50	89	6	305	48	3	5	42	1.43
5588--5627	21	1.9	21	85	10	55	40	0	0	60	0.97
8075--8153	31	2.5	31	91	0	122	29	22	15	32	1.95
8346--8403	24	2.4	24	88	0	80	53	25	3	17	1.59
11841--11886	14	3.2	14	90	3	65	13	0	28	58	1.35
11841--11877	7	5.3	7	93	0	65	10	0	27	62	1.28
14304--14402	44	2.3	43	87	5	144	69	5	6	19	1.28
14293--14401	44	2.6	40	81	12	112	70	5	7	16	1.29
14311--14401	45	2.0	44	91	2	146	70	5	6	17	1.29
14339--14412	22	3.4	22	70	18	64	68	4	6	20	1.29
14324--14419	44	2.2	44	87	9	133	67	3	7	21	1.29
16642--17737	106	10.6	106	87	5	1535	23	18	24	33	1.96
17315--17707	193	2.0	192	96	0	723	23	17	24	34	1.96
17351--17727	99	3.9	99	85	4	460	23	17	24	34	1.96
21013--21057	21	2.1	21	87	0	63	31	28	24	15	1.96
22752--22818	22	3.0	22	95	2	116	19	26	28	25	1.99
24894--25001	44	2.5	44	85	8	148	67	4	6	21	1.32
24920--24994	22	3.4	22	69	20	66	68	4	8	20	1.32
27645--27705	24	2.5	24	72	2	59	31	1	11	55	1.45
31017--31041	6	4.2	6	100	0	50	16	68	0	16	1.22
35017--35109	21	4.6	20	78	4	96	38	19	24	17	1.92
35014--35109	41	2.3	41	96	0	174	39	18	23	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35017--35109	20	4.6	20	78	4	96	38	19	24	17	1.92
35036--35171	41	3.3	41	80	5	114	38	21	21	19	1.94
35098--35193	20	4.7	20	78	5	84	35	23	17	22	1.95
35381--35424	22	2.0	22	95	0	79	20	45	15	18	1.85
35686--35723	20	1.9	20	88	0	58	13	15	21	50	1.78
37043--37087	18	2.5	18	85	0	63	26	42	15	15	1.87
37558--37603	20	2.3	20	84	0	56	36	23	21	17	1.94
37569--37624	20	2.8	20	81	2	69	39	21	23	16	1.92
37613--37670	14	3.9	14	79	16	71	48	25	17	8	1.75
37597--37687	32	2.8	33	94	3	166	47	23	18	10	1.80
37577--37692	19	6.6	19	70	21	83	43	23	21	12	1.86
37699--37821	20	6.7	19	76	10	96	13	20	23	42	1.88
39810--39886	14	4.7	15	74	22	59	45	19	22	12	1.84
39820--39886	18	3.8	19	81	18	92	46	17	22	13	1.83
39912--39962	20	2.5	20	96	0	93	21	23	21	33	1.97
40306--40341	14	2.6	14	90	0	54	30	0	22	47	1.52
40448--40501	14	3.5	14	77	22	63	48	20	20	11	1.80
40429--40506	33	2.4	33	91	0	120	42	21	23	12	1.87
40532--40585	20	2.7	20	94	0	90	22	22	20	35	1.96
40777--40875	42	2.4	42	82	1	128	22	16	21	40	1.91
40861--40953	20	4.6	20	78	4	96	18	24	18	38	1.92
40861--40956	41	2.3	41	98	0	183	18	23	17	39	1.92

Tables:   1

The End!