Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008495.1 Hibiscus syriacus cultivar Beakdansim tig00111338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5120959
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 12 of 21
Found at i:2590224 original size:19 final size:20
Alignment explanation
Indices: 2590195--2590232 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
2590185 AGAAATTTGT
2590195 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
2590215 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
2590233 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:2590275 original size:63 final size:62
Alignment explanation
Indices: 2590200--2590358 Score: 194
Period size: 63 Copynumber: 2.5 Consensus size: 62
2590190 TTTGTTGAAG
* * * * *
2590200 GTGCATCGATGCATATGAAGTGCATCGATGCATTAAT-TTAAATACAAACATCGAATGTCGTCA
1 GTGCATCGATGCATA-GGAGTGCATCGATGCATTAATAATAAA-ACAAACATCAAATGCCCTCA
** **
2590263 GTGCATCGATGCATAAGGAGTGCATCGATGCATTTCTAATAAAATGAACATCAAATGCCCTCA
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCATTAATAATAAAACAAACATCAAATGCCCTCA
2590326 GTGCATCGATGCATCAGGAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCAT
2590359 GCCTCCATTA
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
63 79 0.94
64 5 0.06
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (62 bp):
GTGCATCGATGCATAGGAGTGCATCGATGCATTAATAATAAAACAAACATCAAATGCCCTCA
Found at i:2590991 original size:149 final size:149
Alignment explanation
Indices: 2590813--2591116 Score: 590
Period size: 149 Copynumber: 2.0 Consensus size: 149
2590803 GGGTAGAGGG
*
2590813 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTATGTGGAACATGTGTGAAGTCTTGTAAGACACAT
2590878 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
2590943 TATGGCACTACAGTGCAAT
131 TATGGCACTACAGTGCAAT
2590962 TCTACGCGGTCCTTCGGGATATATATATATTATGTGGAACATGTGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTATGTGGAACATGTGTGAAGTCTTGTAAGACACAT
2591027 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
*
2591092 TATGGCACTACGGTGCAAT
131 TATGGCACTACAGTGCAAT
2591111 TCTACG
1 TCTACG
2591117 TGACACTTCG
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 153 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGATATATATATATTATGTGGAACATGTGTGAAGTCTTGTAAGACACAT
ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
TATGGCACTACAGTGCAAT
Found at i:2597204 original size:19 final size:20
Alignment explanation
Indices: 2597175--2597212 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
2597165 AGAAATTTGT
2597175 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
2597195 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
2597213 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:2597255 original size:63 final size:62
Alignment explanation
Indices: 2597180--2597338 Score: 185
Period size: 63 Copynumber: 2.5 Consensus size: 62
2597170 TTTGTTGAAG
* * * *
2597180 GTGCATCGATGCATATGAAGTGCATCGATGCATTAAT-TTAAATACAAACATCGAATGTAGTCA
1 GTGCATCGATGCATA-GGAGTGCATCGATGCATTAATAATAAA-ACAAACATCGAATGCACTCA
* ** ** *
2597243 GTGCATCGATGCATAAGGAGTGCATCGATGTATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCACTCA
2597306 GTGCATCGATGCATCAGGAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCAT
2597339 GCCTCCATTA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
63 77 0.94
64 5 0.06
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (62 bp):
GTGCATCGATGCATAGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCACTCA
Found at i:2598108 original size:149 final size:149
Alignment explanation
Indices: 2597794--2598097 Score: 599
Period size: 149 Copynumber: 2.0 Consensus size: 149
2597784 GGGTAGAGGG
2597794 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATATGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATATGTGAAGTCTTGTAAGACACAT
2597859 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
2597924 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
*
2597943 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATATGTGAAGTCTTGTAAGACACAT
2598008 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
66 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
2598073 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
2598092 TCTACG
1 TCTACG
2598098 TGGCACTTCG
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 154 1.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATATGTGAAGTCTTGTAAGACACAT
ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
TATGGCACTACGGTGCAAT
Found at i:2598109 original size:23 final size:23
Alignment explanation
Indices: 2598075--2598120 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
2598065 CATTATTATA
*
2598075 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTATACG
*
2598098 TGGCACTTCGGTGCAATTATACG
1 TGGCACTACGGTGCAATTATACG
2598121 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATACG
Found at i:2598789 original size:32 final size:31
Alignment explanation
Indices: 2598753--2598897 Score: 98
Period size: 32 Copynumber: 4.5 Consensus size: 31
2598743 GAGAGAAAAG
*
2598753 ATAGATAAACAAAAAGAAAAAACAA-AAAAATA
1 ATAGAGAAA-AAAAAGAAAAAA-AAGAAAAATA
*
2598785 ATAGAGAAAAAAAAGAAAAAAAAGAAAAAGGA
1 ATAGAGAAAAAAAAGAAAAAAAAGAAAAA-TA
* * * * * *
2598817 AAAAAGAGAAAAGAGAAAAAAAGAAAAGAAAAA
1 ATAGAGAAAAAAAAGAAAAAAA-AGAA-AAATA
*
2598850 ATAGA-AAAAAAGAAGAAAAAAAGAGAGAAA-A
1 ATAGAGAAAAAA-AAGAAAAAAA-AGAAAAATA
* *
2598881 AGAGAAAAAGAAAAAGA
1 ATAGAGAAA-AAAAAGA
2598898 GGATGAAGAA
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
30 2 0.02
31 22 0.24
32 42 0.46
33 22 0.24
34 3 0.03
ACGTcount: A:0.79, C:0.01, G:0.17, T:0.03
Consensus pattern (31 bp):
ATAGAGAAAAAAAAGAAAAAAAAGAAAAATA
Found at i:2598792 original size:22 final size:21
Alignment explanation
Indices: 2598767--2598929 Score: 104
Period size: 22 Copynumber: 7.4 Consensus size: 21
2598757 ATAAACAAAA
*
2598767 AGAAAAAACAAAAAAATAATAG
1 AGAAAAAAGAAAAAAA-AATAG
*
2598789 AGAAAAAA-AAGAAAAAA-A-
1 AGAAAAAAGAAAAAAAAATAG
* *
2598807 AGAAAAAGGAAAAAAGAGAAAAG
1 AGAAAAAAGAAAAAA-A-AATAG
2598830 AGAAAAAAAGAAAAGAAAAAATAG
1 AG-AAAAAAG-AAA-AAAAAATAG
*
2598854 A-AAAAAAGAAGAAAAAAAGAG
1 AGAAAAAAGAA-AAAAAAATAG
2598875 AGAAAAAGAGAAAAAGAAAA-AG
1 AGAAAAA-AGAAAAA-AAAATAG
*
2598897 AGGATGAAGAAA-AAAGAAAAAAAAG
1 A-GA--AA-AAAGAAA-AAAAAATAG
2598922 AGAAAAAA
1 AGAAAAAA
2598930 ATCAAGTATT
Statistics
Matches: 117, Mismatches: 6, Indels: 37
0.73 0.04 0.23
Matches are distributed among these distances:
18 7 0.06
19 6 0.05
20 3 0.03
21 22 0.19
22 30 0.26
23 12 0.10
24 20 0.17
25 12 0.10
26 5 0.04
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.02
Consensus pattern (21 bp):
AGAAAAAAGAAAAAAAAATAG
Found at i:2598801 original size:31 final size:28
Alignment explanation
Indices: 2598763--2598930 Score: 121
Period size: 29 Copynumber: 5.8 Consensus size: 28
2598753 ATAGATAAAC
2598763 AAAAAGAAAAAACAAAAAAATAATAGAGAAA
1 AAAAAGAAAAAA-AAAAAAA-AA-AGAGAAA
*
2598794 AAAAAG--AAAAAAAAGAAAAAG-GAAA
1 AAAAAGAAAAAAAAAAAAAAAAGAGAAA
* *
2598819 AAAGAGAAAAGAGAAAAAAAGAAA-AGAAA
1 AAAAAGAAAA-A-AAAAAAAAAAAGAGAAA
* *
2598848 AAATAGAAAAAAAGAAGAAAAAAAGAG-AG
1 AAAAAGAAAAAAA-AA-AAAAAAAGAGAAA
* * * *
2598877 AAAAAGAGAAAAAGAAAAAGAGGATGAAGA
1 AAAAAGAAAAAAAAAAAAAAAAGA-GAA-A
2598907 AAAAAGAAAAAAAAGAGAAAAAAA
1 AAAAAGAAAAAAAA-A-AAAAAAA
2598931 TCAAGTATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 25
0.72 0.11 0.17
Matches are distributed among these distances:
25 9 0.08
26 2 0.02
27 13 0.12
28 12 0.11
29 45 0.42
30 14 0.13
31 7 0.07
32 5 0.05
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.02
Consensus pattern (28 bp):
AAAAAGAAAAAAAAAAAAAAAAGAGAAA
Found at i:2598810 original size:40 final size:40
Alignment explanation
Indices: 2598763--2598930 Score: 121
Period size: 40 Copynumber: 4.1 Consensus size: 40
2598753 ATAGATAAAC
* *
2598763 AAAAAGAAAAAACAAAAAA-ATAATAGAGAAAAAAAAGAAA
1 AAAAAGAAAAAACAAAAAAGAGAAAAGAG-AAAAAAAGAAA
**
2598803 AAAAAGAAAAAGGAAAAAAGAGAAAAGAGAAAAAAAGAAA
1 AAAAAGAAAAAACAAAAAAGAGAAAAGAGAAAAAAAGAAA
* * *
2598843 AGAAAA-AATAGAAA-AAAAGAAGAAAAAAAGAGAGAAAAAG-AG
1 A-AAAAGAA-A-AAACAAAA-AAG-AGAAAAGAGAAAAAAAGAAA
** ** *
2598885 AAAAAGAAAAAGAGGATGAAGAAAAAAGA-AAAAAAAGAGAA
1 AAAAAGAAAAA-ACAAAAAAGAGAAAAGAGAAAAAAAGA-AA
2598926 AAAAA
1 AAAAA
2598931 TCAAGTATTT
Statistics
Matches: 104, Mismatches: 13, Indels: 21
0.75 0.09 0.15
Matches are distributed among these distances:
39 7 0.07
40 41 0.39
41 31 0.30
42 10 0.10
43 15 0.14
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.02
Consensus pattern (40 bp):
AAAAAGAAAAAACAAAAAAGAGAAAAGAGAAAAAAAGAAA
Found at i:2598819 original size:23 final size:22
Alignment explanation
Indices: 2598764--2598927 Score: 89
Period size: 25 Copynumber: 6.9 Consensus size: 22
2598754 TAGATAAACA
*
2598764 AAAAGAAAAAACAA-AAAAATAA
1 AAAAGAAAAAA-AAGAAAAAGAA
* *
2598786 TAGAGAAAAAAAAGAAAAAAAAGAA
1 AAAAGAAAAAAAAG---AAAAAGAA
* *
2598811 AAAGGAAAAAAGAGAAAAGAGAAA
1 AAAAGAAAAAAAAGAAAA-AG-AA
*
2598835 AAAAGAAAAGAAAA-AATAGAAAAA
1 AAAAGAAAA-AAAAGAA-A-AAGAA
2598859 AAGAAGAAAAAAAGAGAGAAAAAGAGA
1 AA-AAG-AAAAAA-A-AGAAAAAGA-A
* * **
2598886 AAAAGAAAAAGAGGATGAAGAA
1 AAAAGAAAAAAAAGAAAAAGAA
2598908 AAAAGAAAAAAAAGAGAAAA
1 AAAAGAAAAAAAAGA-AAAA
2598928 AAATCAAGTA
Statistics
Matches: 107, Mismatches: 19, Indels: 31
0.68 0.12 0.20
Matches are distributed among these distances:
21 2 0.02
22 27 0.25
23 10 0.09
24 17 0.16
25 32 0.30
26 12 0.11
27 5 0.05
28 2 0.02
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.02
Consensus pattern (22 bp):
AAAAGAAAAAAAAGAAAAAGAA
Found at i:2598856 original size:45 final size:45
Alignment explanation
Indices: 2598791--2598930 Score: 137
Period size: 45 Copynumber: 3.1 Consensus size: 45
2598781 AATAATAGAG
*
2598791 AAAA-AAAAGAAAAAAAAG-AAAAAGGAA-AAAAGAGAAAAGAGAAA
1 AAAAGAAAAGAAAAAAAAGAAAAAAAGAAGAAAA-A-AAAAGAGAAA
* *
2598835 AAAAGAAAAGAAAAAATAGAAAAAAAGAAGAAAAAAAGAGAGAAA
1 AAAAGAAAAGAAAAAAAAGAAAAAAAGAAGAAAAAAAAAGAGAAA
* * *
2598880 AAGAGAAAAAGAAAAAGAGGATGAAGAAAA-AAG-AAAAAAAAGAGAAA
1 AAAAG-AAAAGAAAAA-A--AAGAAAAAAAGAAGAAAAAAAAAGAGAAA
2598927 AAAA
1 AAAA
2598931 TCAAGTATTT
Statistics
Matches: 80, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
44 4 0.05
45 26 0.32
46 19 0.24
47 21 0.26
48 3 0.04
49 7 0.09
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.01
Consensus pattern (45 bp):
AAAAGAAAAGAAAAAAAAGAAAAAAAGAAGAAAAAAAAAGAGAAA
Found at i:2598891 original size:68 final size:65
Alignment explanation
Indices: 2598769--2598930 Score: 188
Period size: 68 Copynumber: 2.4 Consensus size: 65
2598759 AAACAAAAAG
* *
2598769 AAAAAACAAAA-AAATAATAGAGAAAAAAAAGAAAAAAAAGAAAAAGGAAAAAAGAGAAAAGA-G
1 AAAAAA-AAAAGAAAAAATAGAGAAAAAAAAGAAAAAAAAGAAAAAAGAAAAAAGA-AAAAGAGG
2598832 A-
64 AT
2598833 AAAAAAGAAAAGAAAAAATAGA-AAAAAAGAAGAAAAAAAGAGAGAAAAAGAGAAAAAGAAAAAG
1 AAAAAA-AAAAGAAAAAATAGAGAAAAAA-AAGAAAAAAA-AGA-AAAAAGA-AAAAAGAAAAAG
2598897 AGGAT
61 AGGAT
* * *
2598902 GAAGAAAAAAGAAAAAAAAGAGAAAAAAA
1 AAAAAAAAAAGAAAAAATAGAGAAAAAAA
2598931 TCAAGTATTT
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
64 16 0.19
65 19 0.23
66 3 0.04
67 12 0.14
68 24 0.29
69 10 0.12
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.02
Consensus pattern (65 bp):
AAAAAAAAAAGAAAAAATAGAGAAAAAAAAGAAAAAAAAGAAAAAAGAAAAAAGAAAAAGAGGAT
Found at i:2598906 original size:15 final size:14
Alignment explanation
Indices: 2598763--2598928 Score: 92
Period size: 15 Copynumber: 12.4 Consensus size: 14
2598753 ATAGATAAAC
*
2598763 AAAAAGAAAAA-AC
1 AAAAAGAAAAAGAG
2598776 AAAAA-AATAATAGAG
1 AAAAAGAA-AA-AGAG
2598791 AAAAA-AAAGAA-A-
1 AAAAAGAAA-AAGAG
2598803 AAAAAGAAAAAG-G
1 AAAAAGAAAAAGAG
2598816 AAAAAAGAGAAAAGAG
1 -AAAAAGA-AAAAGAG
* *
2598832 AAAAAAAGAAAAGAA
1 AAAAAGA-AAAAGAG
*
2598847 AAAATAGAAAAAAAG
1 AAAA-AGAAAAAGAG
*
2598862 AAGAA-AAAAAGAG
1 AAAAAGAAAAAGAG
2598875 ----AGAAAAAGAG
1 AAAAAGAAAAAGAG
2598885 AAAAAGAAAAAGAGG
1 AAAAAGAAAAAGA-G
**
2598900 ATGAAGAAAAA-AG
1 AAAAAGAAAAAGAG
2598913 --AAA-AAAAAGAG
1 AAAAAGAAAAAGAG
2598924 AAAAA
1 AAAAA
2598929 AATCAAGTAT
Statistics
Matches: 122, Mismatches: 11, Indels: 40
0.71 0.06 0.23
Matches are distributed among these distances:
9 1 0.01
10 13 0.11
11 4 0.03
12 9 0.07
13 22 0.18
14 21 0.17
15 49 0.40
16 3 0.02
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAAAGAAAAAGAG
Found at i:2598910 original size:60 final size:57
Alignment explanation
Indices: 2598792--2598930 Score: 157
Period size: 60 Copynumber: 2.5 Consensus size: 57
2598782 ATAATAGAGA
2598792 AAAAAAAG-AAAAAAA-AG--AAAAAGGAAAAAAGAGAAAAGAGAAAAAAAGAAAAG
1 AAAAAAAGAAAAAAAAGAGAAAAAAAGGAAAAAAGAGAAAAGAGAAAAAAAGAAAAG
* *
2598845 AAAAAATAG-AAAAAAAGAAGAAAAAAAGAGAGAAAAAGAGAAAA-AGAAAAAGAGGATGAAG
1 AAAAAA-AGAAAAAAAAG-AGAAAAAAAG-GA-AAAAAGAGAAAAGAGAAAAA-AAGA-AAAG
2598906 -AAAAAAGAAAAAAAAGAGAAAAAAA
1 AAAAAAAGAAAAAAAAGAGAAAAAAA
2598931 TCAAGTATTT
Statistics
Matches: 74, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
53 6 0.08
54 9 0.12
56 2 0.03
58 6 0.08
59 20 0.27
60 28 0.38
61 3 0.04
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.01
Consensus pattern (57 bp):
AAAAAAAGAAAAAAAAGAGAAAAAAAGGAAAAAAGAGAAAAGAGAAAAAAAGAAAAG
Found at i:2598927 original size:8 final size:8
Alignment explanation
Indices: 2598794--2598928 Score: 92
Period size: 8 Copynumber: 17.6 Consensus size: 8
2598784 AATAGAGAAA
2598794 AAAAAGA-
1 AAAAAGAG
*
2598801 AAAAAAAG
1 AAAAAGAG
2598809 AAAAAG-G
1 AAAAAGAG
2598816 AAAAA-AG
1 AAAAAGAG
2598823 AGAAAAGAG
1 A-AAAAGAG
*
2598832 AAAAAAAG
1 AAAAAGAG
2598840 -AAAAGA-
1 AAAAAGAG
*
2598846 AAAAATAG
1 AAAAAGAG
*
2598854 AAAAAAAG
1 AAAAAGAG
2598862 AAGAAA-A-
1 AA-AAAGAG
*
2598869 AAAGAGAG
1 AAAAAGAG
2598877 AAAAAGAG
1 AAAAAGAG
2598885 -AAAA-AG
1 AAAAAGAG
2598891 AAAAAGAGG
1 AAAAAGA-G
**
2598900 ATGAAGA-
1 AAAAAGAG
*
2598907 AAAAAGAAA
1 AAAAAG-AG
2598916 AAAAAGAG
1 AAAAAGAG
2598924 AAAAA
1 AAAAA
2598929 AATCAAGTAT
Statistics
Matches: 101, Mismatches: 13, Indels: 27
0.72 0.09 0.19
Matches are distributed among these distances:
6 4 0.04
7 39 0.39
8 40 0.40
9 18 0.18
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.01
Consensus pattern (8 bp):
AAAAAGAG
Found at i:2602312 original size:322 final size:322
Alignment explanation
Indices: 2601727--2602370 Score: 1146
Period size: 322 Copynumber: 2.0 Consensus size: 322
2601717 ATATTCTAGA
2601727 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGCTTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGCTTGG
*
2601792 AAGACTGTCTATTCCATGCTGAAAATTATATTAATAAGAGAATTAAATCACCCTTCATTGGATGT
66 AAGACTGTCTATTCCATGCTGAAAATTATATTAATAAGAGAATTAAATAACCCTTCATTGGATGT
* * *
2601857 TCCCTTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATTCCTTGAAT
131 TCCCCTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAAT
*
2601922 GTGTGAATTAAGTATCCTTCAATGGCTTCTCACTTGGCTGATGTTGAAAAGACTCTCCCTTGGTT
196 GTGTGAATTAAGTATCCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTT
*
2601987 TAAACTCATCCAAATCATCCATGCATAAATCTCCCGTAACAAAATTCCAGACTGCACTGTCT
261 TAAACTCATCCAAATCATCCATGCATAAATCTCCCATAACAAAATTCCAGACTGCACTGTCT
*
2602049 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTTGTCCAAGGCTTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGCTTGG
* * * * *
2602114 AAGACTGTTTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATAACCTTTCATTGGATGT
66 AAGACTGTCTATTCCATGCTGAAAATTATATTAATAAGAGAATTAAATAACCCTTCATTGGATGT
2602179 TCCCCTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAAT
131 TCCCCTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAAT
2602244 GTGTGAATTAAG-AGTCCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGT
196 GTGTGAATTAAGTA-TCCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGT
* *
2602308 TTAAACTCATCCAAATCATTCATGCATAAATCTCCCATAACAAAATTCCAGCCTGCACTGTCT
260 TTAAACTCATCCAAATCATCCATGCATAAATCTCCCATAACAAAATTCCAGACTGCACTGTCT
2602371 CCAATAAATC
Statistics
Matches: 307, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
321 1 0.00
322 306 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (322 bp):
TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGCTTGG
AAGACTGTCTATTCCATGCTGAAAATTATATTAATAAGAGAATTAAATAACCCTTCATTGGATGT
TCCCCTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAAT
GTGTGAATTAAGTATCCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTT
TAAACTCATCCAAATCATCCATGCATAAATCTCCCATAACAAAATTCCAGACTGCACTGTCT
Found at i:2604845 original size:812 final size:811
Alignment explanation
Indices: 2602049--2607036 Score: 7388
Period size: 812 Copynumber: 6.2 Consensus size: 811
2602039 TGCACTGTCT
* **
2602049 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTTGTCCAAGGCTTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * *
2602114 AAGACTGTT-TATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATAACCTTTCATTGGATG
66 AAGACT-TTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATG
* * * *
2602178 TTCCCCTGAATAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCATTGAA
130 CTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAA
*
2602243 TGTGTGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGT
195 TGTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGT
* * * *
2602308 TTAAACTCATCCAAATCATTCATGCAT-AAATCTCCCATAACAAAATTCCAGCCTGCACTGTCTC
260 TCAAACTCATCCAAATCATCCATGCATAAAAT-TCCCGTAACAAAATTCCAGCCTGCACTGTCTT
* *
2602372 CAATAAATCGATCATA--T--A--T--C---A-C--ATTGAGGTTATTTAAAAGGAATTGGAAAG
324 CAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAAAG
* * * * * * *
2602423 CTAAAAGATAGAGGAATAATTCCCAATTGATTTCTGGAAGCAATCATGCCTTTATCACATCCAGA
389 ATAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGA
* * * *
2602488 AT-TTAGAGACATTCTG-CTGATATTCTTGCATATGATGAAACCGTTCAACAAACGTGACCCACA
454 ATCTGA-AGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACT
* * ** * * *
2602551 AACTATAAATGATGAGCTAGGAACCAATGCTATAAAAAGAAATGAAATGAATACTACAAGACTAT
518 AGCTATATATGATGAGCTAGGAACCAACACTAT-AACA-AAAGGAAATGAAGACTACAAGACTAT
* * *
2602616 CTTGAAGCCGATAAAATTCTAAAAGAGAACAAAAATGAAAGAAACCTCTCAAAGATG-TTT-TAT
581 CTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTATAT
** * * * *
2602679 ATATTCAAAACATGTATATACAAATGATTCCAAAGGTGCCTATTTATAATATTTCTAAGCAGCAT
646 ATATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACAT
*
2602744 ATGAAAAGACTCAAAAGATGAAAAATTCTCATTAATTTAGCAATAAAATGCACTTGAATGCTTTG
711 ATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTG
* *
2602809 TTTTTATTATCTTCAAGGTTGGCTGAATATTCTAAA
776 TCTTTATTATCTTCAAGGTTGGCTGAATATTCTAGA
* * *
2602845 TCATTTTGGTGATGAATCTAGAGAATTTGAAGCTTAATTTGGTCTTAATTTCGTCCAAGGGGTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* *
2602910 AAGACTCTTGCTATTCCTTGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCGT
66 AAGACT-TT-CTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* *
2602975 GCTTCCTTGAAGAATATGAACAACCCTTGACTTTGGATGATAACAATCATCTTTGAATGCCTTGA
129 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGA
* * * *
2603040 ATATGTGAATTAAGAGTCCTTCAAAGGCTTGTCACTTGGCTGAATTTGAAAAGACACTCCCTTGG
194 ATGTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGG
2603105 TTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
259 TTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
** * * *
2603170 CAATAAATCGATCATATCTCAAGCTCCTAATATCGGATTGAGGTTATT-GAAACGACATTGGAAA
324 CAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGA-ATTGGAAA
* * **
2603234 GATAAGAGGTAGATGAATAATTACCAATTGATTTCTGGAACCAAACATGTCTGTATGGCATCCAG
388 GATAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAG
* *
2603299 AATCTGAAGACATTCTAACTGATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACT
453 AATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACT
* *
2603364 AGCTATATTTGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTAGAAGACTATCT
518 AGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCT
* * *
2603429 TGAAGTCGA-ATAATTTCTACAAGAGAACAAGAATGAAAGAAACATCTCAAAGATGTTATATATA
583 TGAAGCCGATA-AAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATG---T-T-T-
* * *
2603493 TATATATATTCAAAATGTGTATCTACAAATGATCTCAAATGTGCCTATTTACAGTATTTCTAAGC
641 TATATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGC
* * *
2603558 AACATATGAAAAGACTCAAAAGTTGAAAAATTCTCATCAATTTAGCAATAAAATGCATTTGAATT
706 AACATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATG
* ** *
2603623 CTTTGTCTTTCTTATCTTCAAGGTTGATTGAATATTCTATA
771 CTTTGTCTTTATTATCTTCAAGGTTGGCTGAATATTCTAGA
* * *
2603664 TCATTTTGGGGATAAATCTATACAATTTGAAGCTTAATTTGGCCTTATTTTCGTCCAAGGGGTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * * *
2603729 AAGACTCTCTATTCCATGTTGAAAGTTGTCTTAATAAGTGAATTAAATCACCCTTCGTTGCATGC
66 AAGACTTTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
* * *
2603794 T-TCTTCAAGAATATGAACAACCCTTGACATTAGATGATAACAATCATCTTTGAATGCCTTGAAT
131 TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAAT
* *
2603858 GTATGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTT
196 GTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTT
*
2603923 CAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACGGTCTTCA
261 CAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCA
* *
2603988 ATAAATCGATCATATCTCAAGCTCCCGGTATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGAT
326 ATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAAAGAT
* * * * *
2604053 AAGAGAAAGATTAATAATTCTCAATTGATTTCTGAAACCAAACATGTCTGTATCACATCTAGAAT
391 AAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGAAT
* * * *
2604118 CTGAATACATTCTGACTAATATTCTAGCATATGATGAAACCGTTCAACGAACGTGACCCACTAGC
456 CTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGC
*
2604183 TATATATGATGAGCTAGGAACTAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGA
521 TATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGA
*
2604248 AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATATT
586 AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTATATATATT
* * *
2604313 CAAAATGTGTATCTACAAATGATCACAAAGGTGCCTATTTATAGTATGTCTAAGCAGCATATGAA
651 CAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATATGAA
*
2604378 AAGACTCAAAAGATG-AAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTTTTT
716 AAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTT
2604442 ATTATCTTCAAGGTTGGCTGAATATTCTAGA
781 ATTATCTTCAAGGTTGGCTGAATATTCTAGA
* * *
2604473 TCATTTTGGGGATTAATCTAGAGAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTAG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * *
2604538 AAGATTCTTTCTATTCCTTGCTGAAAATTGTCTTAATAAGTGAATCAAATCTCCCTTCATTGCAT
66 AAGA--CTTTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
* * *
2604603 GTTTCCTTGAAGAATATGAACAACCCTTGACTTTGGATGATAACAATCATCTTTGAATGCCTTGA
129 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGA
* *
2604668 ATGTGTGAATTAAGAGTCCTTCAAAGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGG
194 ATGTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGG
2604733 TTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
259 TTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTT
* * * *
2604798 CAATAAATCGATCATATCTTAAGCTCCCGTTATCGGATTGAGGTGATTCAAAAGGCATTAGAAAG
324 CAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAAAG
* * *
2604863 ATAAGAGATAGTTGAATAATTCCCAAGTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGA
389 ATAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGA
* *
2604928 ATCTGAAGACATTCTGACTGATATTCTTGCATTTGATGAAACCGTTCAACGAAAGTGACCCACTA
454 ATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTA
* * * * * *
2604993 TCTCTATTTGATGAGCTAGGAACCAACACTATATA-AAAAGGAAATCAAGAATACAAGACAATCT
519 GCTATATATGATGAGCTAGGAACCAACACTATA-ACAAAAGGAAATGAAGACTACAAGACTATCT
2605057 TGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTATATATAT
583 TGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATG-T-T-T-TAT
*
2605122 ATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGAG-CTATTTATAGTATTTCTAAGCAAC
644 ATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAAC
*
2605186 AT-TGAAAAGACTCAAAAGATGAAAATTTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTT
709 ATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTT
* *
2605250 TGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGG
774 TGTCTTTATTATCTTCAAGGTTGGCTGAATATTCTAGA
*
2605288 TCATTTTGGGGATGAATCTAGACAATTTGAAG-TTAATTTGGCCTTATTTTCGTCCAAGGGGTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
*
2605352 AAGACTCTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
66 AAGACTTTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
* * *
2605417 TCCCTTCAAGAATATGAACAACCCTTGACATTCGATGATAACAATCATCTTTGAATGCCTTGAAT
131 TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAAT
* * *
2605482 GTATGAATTAAGAGTCCTT-AAATGGCTTCTCACTTGGCTAAAGTTGAAAAGTCTCTCCCTTGGT
196 GTGTGAATTAAGAGTCCTTCAAA-GGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGT
* *
2605546 TCAAACTCATCCAATTCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTT
260 TCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTC
* *
2605611 AATAAATCGAACATATCTCAAGCTCCCGATATTGGATTGAGGTGATTCAAAAGGAATTGGAAAGA
325 AATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAAAGA
* * * *
2605676 TAAGAGATAGGTGAATAATTCCCAATTGATTTCTGAAACC-AACATGTCTGTATCCCATCTAGAA
390 TAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGAA
* * * *
2605740 TCTGAATACATTCTGACTGAAATTGTTTCATCTGATGAAACCGTTCAACGAACGT-AGCCCACTA
455 TCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGA-CCCACTA
**
2605804 GCTATATATGATGAGCTAGGAAGTAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
519 GCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
* * * *
2605869 GAAGTCGATAAAGTTCTACAAGAGAGA-AAGAATGAAAGCAACCTCTTAATGATGTTTTATATAT
584 GAAGCCGATAAAGTTCTACAAGAGA-ACAAGAATGAAAGAAACCTCTCAAAGATGTTTTATATAT
* * * *
2605933 ATTCAAAATGTGTATCTACAATTGATCTCAAATGTGCCTATTTACAGTATTTCTAAGCAACATAT
648 ATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATAT
2605998 GAAAAGACTCAAAAGATG-AAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTC
713 GAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTC
* *
2606062 TTTCTTATCTTCAAGGTTGGATGAATATTCTAGA
778 TTTATTATCTTCAAGGTTGGCTGAATATTCTAGA
* **
2606096 TCATTTTGGGGATGAATCTAGACAATTTAAAGCTTAATTTGGCCTTAATTTCGTCCAAGGCTTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * *
2606161 AAGACTGTCTATTCCATGCTGAAAATTGTCTTAAGAAGTGAATTAAATCACCCTTCATTGGATGC
66 AAGACTTTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
* * * *
2606226 TCCCTTAAAGAATATGAACAACCATTGACTTTACATGATAACAATAATCTTTGAATGCCTTGAAT
131 TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAAT
* * * *
2606291 GTGTGAATTAAGAGTTCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAACACTATCCCTTGGTT
196 GTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGG-T
* * * * *
2606356 TC-AACTCATCCAAATCATCTATTCAT-AAATCTCCCGTAACTAAATTCCAGCCTGCTCTGTGTT
260 TCAAACTCATCCAAATCATCCATGCATAAAAT-TCCCGTAACAAAATTCCAGCCTGCACTGTCTT
* * * * * * *
2606419 CAATAAATCAACCAGATCTCAAGTTCTCGATATCGCATTGAGGTGATTTAAAAGGAATTGGAAAG
324 CAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAAAG
* * * * * * * *
2606484 CTAAGAGATAGAGGAATAATTCCCAATTGATTTCTGGAAGCAATCATGCCTTTATCACATACAAA
389 ATAAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGA
* *
2606549 ATTTGAAGACATTCT-ACTGATATTCTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTA
454 ATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTA
* **
2606613 ACTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
519 GCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
* * *
2606678 GAAACCGATAAAGTTCTACAAAAGAACAAGAATGAAAGCAACCTCTCAAAGATG-TTT-TATATA
584 GAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTATATATA
* * *
2606741 TTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCGAAGCAGCATATG
649 TTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATATG
* *
2606806 AAAAGATTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTTT
714 AAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCT
2606871 TTATTATCTTCAAGGTTGGCTGAATATTCTAGA
779 TTATTATCTTCAAGGTTGGCTGAATATTCTAGA
* * *
2606904 TCATTTTGGGGATGAATCTAGAGAATTTGAAGCTGAATTTGGCCTTAATTTTGTCCAAGGGGTGG
1 TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * *
2606969 AAAACTCTTGCTATTCCTTGCTGAAAATTGTCTTAATAAGTGAATTAAAGCACCCTTCATTGCAT
66 AAGACT-TT-CTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
2607034 GCT
129 GCT
2607037 TCACTACAAG
Statistics
Matches: 3795, Mismatches: 341, Indels: 98
0.90 0.08 0.02
Matches are distributed among these distances:
796 67 0.02
798 240 0.06
799 4 0.00
800 1 0.00
802 1 0.00
804 1 0.00
807 119 0.03
808 283 0.07
809 654 0.17
810 178 0.05
811 317 0.08
812 892 0.24
813 76 0.02
814 54 0.01
815 131 0.03
816 500 0.13
817 59 0.02
818 2 0.00
819 216 0.06
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (811 bp):
TCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
AAGACTTTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGC
TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAAT
GTGTGAATTAAGAGTCCTTCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTT
CAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTCA
ATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGGAAAGAT
AAGAGATAGATGAATAATTCCCAATTGATTTCTGGAACCAAACATGTCTGTATCACATCCAGAAT
CTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGC
TATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGA
AGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTATATATATT
CAAAATGTGTATCTACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAACATATGAA
AAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTT
ATTATCTTCAAGGTTGGCTGAATATTCTAGA
Found at i:2610636 original size:2 final size:2
Alignment explanation
Indices: 2610629--2610689 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
2610619 ATCATCTACA
2610629 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2610671 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
2610690 ATTTACGAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2610896 original size:13 final size:12
Alignment explanation
Indices: 2610846--2610888 Score: 59
Period size: 13 Copynumber: 3.4 Consensus size: 12
2610836 AATGATGTGC
2610846 AATGCACGTCATA
1 AATGC-CGTCATA
2610859 AATGCCGTCATA
1 AATGCCGTCATA
*
2610871 AATGACCATCATA
1 AATG-CCGTCATA
2610884 AATGC
1 AATGC
2610889 GTGTCATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 12 0.43
13 16 0.57
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (12 bp):
AATGCCGTCATA
Found at i:2612913 original size:599 final size:588
Alignment explanation
Indices: 2611767--2612954 Score: 1713
Period size: 599 Copynumber: 2.0 Consensus size: 588
2611757 TCGTCCAAGG
* * *
2611767 GGTGGAGGACTCTCTATTCCATGCTGAAAATAGTCTTAATAAGTGAATTAAATCACCCTTCATTG
1 GGTGGAAGACTCTCTATTCCATGCTGAAAATAGTCTTAATAAGTAAATGAAATCACCCTTCATTG
* * * * *
2611832 CATCCTCCCTTCAAGAATTTGAACACCCTTGACATTGGATGATAACAATTATCTTTAAATGCCTT
66 CATCCTCCCTTCAAAAATATGAACACCCTTGACATTAGATGATAACAATCATCTTTAAATACCTT
*
2611897 GAATGTATCAATTAAGAGTCCATCAATGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTT
131 GAATGTATCAATTAAGAGTCCATCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTT
* **
2611962 GCTTCAAACTCAACCATGCATAAAATTCCCGTAACAAAATTCCAGCTTGCACTATCTTCAATAAA
196 GCATCAAACTCAACCATGCATAAAATTCCCGTAACAAAATTCCAGCCGGCACTATCTTCAATAAA
*
2612027 TCGATCATATATCAAGCTCCTGATATCGGATTGAGGTGATTCAAAACGCATTGAAAAGATAAGAA
261 TCAATCATATATCAAGCTCCTGATATCGGATTGAGGTGATTCAAAACGCATTGAAAAGATAAGAA
2612092 ATAGATGAATAATTACCAATTGATTTCTAGAACCAAACATGCATGTATTGCATCCAAAATCTGAA
326 ATAGATGAATAATTACCAATTGATTTCTAGAACCAAACATGCATGTATTGCATCCAAAATCTGAA
**
2612157 GACATTCTGTCTGAAGTTCTTGCATATGTTGAAACTGTTCAACGAACGTGACCCACTAGCTATAT
391 GACATTCTAACTGAAGTTCTTGCATATGTTGAAACTGTTCAACGAACGTGACCCACTAGCTATAT
* *
2612222 TTGATGAGCTAGGAACCAACATTATAACAAAAGAAAATGAAGACTACAAGACTATCTCGAAAATG
456 TTGATGAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTACAAGACTATCTCGAAAACG
2612287 ATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTATATATATATTCAAAA
521 ATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTATATATATATTCAAAA
2612352 TGT
586 TGT
* *
2612355 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTAAATGAGATCACCCTTCAT
1 GGTGGAAGACTC-T-CTATTCCATGCTGAAAATAGTCTTAATAAGTAAATGAAATCACCCTTCAT
* * * *
2612420 TGCATGCTTCCTT-AAAAATATGAACAACCCTTGA-ATTTAGATGATAACAATCATTTTTGAATA
64 TGCATCCTCCCTTCAAAAATATGAAC-ACCCTTGACA-TTAGATGATAACAATCATCTTTAAATA
* * * * * * * *
2612483 CCTTGATTGTGTGAATTAAGAGTCCTTCAAAGGCTTGTTACTTGGTTGAAGTTGAAAAGACTCTT
127 CCTTGAATGTATCAATTAAGAGTCCATCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTC
* * *
2612548 CCTTGGATCAAACTCATCCAAATCATCCATGCATAAAATTCCTGTAACAAAATTCCATCCGGCAC
192 CCTTGCATCAAA--C-T-C--A--A-CCATGCATAAAATTCCCGTAACAAAATTCCAGCCGGCAC
* * * *
2612613 TGTCTTGAATAAATCAATCATATCTCAAGCTCCAT-ATATCGGATTGAGGTGATTCAAGA-GCCA
248 TATCTTCAATAAATCAATCATATATCAAGCTCC-TGATATCGGATTGAGGTGATTCAAAACG-CA
* * * * * * *
2612676 TTGAAAAGATAATAGATATATGAATATTTCCCAATTGATTTCTGGAACTAAACATGCATGTATTG
311 TTGAAAAGATAAGAAATAGATGAATAATTACCAATTGATTTCTAGAACCAAACATGCATGTATTG
*
2612741 CATCCAGAATCTGAAGACATTCTAACTGATA-TTCTTGCATATGTTGAAA-TCGTTCAACGAACG
376 CATCCAAAATCTGAAGACATTCTAACTGA-AGTTCTTGCATATGTTGAAACT-GTTCAACGAACG
*
2612804 TGACCTACTAGCTATATTTGATGAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTACA
439 TGACCCACTAGCTATATTTGATGAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTACA
* ** * *
2612869 AGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACCAGAATGAAAGGAACCTCTCAAAGATGT
504 AGACTATCTCGAAAACGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGT
2612934 TATATATATATTCAAAATGT
569 TATATATATATTCAAAATGT
2612954 G
1 G
2612955 TATCTACTAA
Statistics
Matches: 531, Mismatches: 52, Indels: 23
0.88 0.09 0.04
Matches are distributed among these distances:
588 11 0.02
589 12 0.02
590 153 0.29
592 1 0.00
593 1 0.00
594 1 0.00
596 1 0.00
598 3 0.01
599 346 0.65
600 2 0.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (588 bp):
GGTGGAAGACTCTCTATTCCATGCTGAAAATAGTCTTAATAAGTAAATGAAATCACCCTTCATTG
CATCCTCCCTTCAAAAATATGAACACCCTTGACATTAGATGATAACAATCATCTTTAAATACCTT
GAATGTATCAATTAAGAGTCCATCAAAGGCTTCTCACTTGGCTGAAGTTGAAAAGACTCTCCCTT
GCATCAAACTCAACCATGCATAAAATTCCCGTAACAAAATTCCAGCCGGCACTATCTTCAATAAA
TCAATCATATATCAAGCTCCTGATATCGGATTGAGGTGATTCAAAACGCATTGAAAAGATAAGAA
ATAGATGAATAATTACCAATTGATTTCTAGAACCAAACATGCATGTATTGCATCCAAAATCTGAA
GACATTCTAACTGAAGTTCTTGCATATGTTGAAACTGTTCAACGAACGTGACCCACTAGCTATAT
TTGATGAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTACAAGACTATCTCGAAAACG
ATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTATATATATATTCAAAA
TGT
Found at i:2613853 original size:18 final size:18
Alignment explanation
Indices: 2613808--2613847 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
2613798 GCAACATATG
2613808 AAAAGACTCAAAAGATGA
1 AAAAGACTCAAAAGATGA
2613826 AAAAGACTCAAAAGATGA
1 AAAAGACTCAAAAGATGA
2613844 AAAA
1 AAAA
2613848 TTCTCATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.65, C:0.10, G:0.15, T:0.10
Consensus pattern (18 bp):
AAAAGACTCAAAAGATGA
Found at i:2615129 original size:600 final size:599
Alignment explanation
Indices: 2613984--2615174 Score: 1795
Period size: 600 Copynumber: 2.0 Consensus size: 599
2613974 TTGTCCAAGG
* * *
2613984 GGTGTAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCATCCTTCAT
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATGAAATCACCCTTCAT
* * *
2614049 TGCATGCTCCCTTGAAGAATATGAACAATCCTTGACTTTAGATGATAACAATCAGCTTTGAATGC
66 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGAATTTAGATGATAACAATCAGCTTTGAATAC
* * * * * *
2614114 CTTGAATGTGTGAATCAAGAGTTCTGCAACGGCTACTCACTTGTCTGATGTTGAAAAGACTCTCC
131 ATTGAATGTGTGAATCAAGAGTCCTGCAAAGGCTACTCACTTGGCTGAAGTTGAAAACACTCTCC
*
2614179 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACT
196 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCATGCACT
* * *
2614244 GTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTGAAAAGGCAATG
261 GTCTTCAATAAATCAATCATATCTCAAGCTCCAGATATCGGATTGAGGTGATTCAAAAGGCAATG
* * *
2614309 GAAAGATAAGAGACATAGAAATAATTCGCAATTGATTTTTGGAACCAACCATGTCTGTATAGAGT
326 AAAAGATAAGAGA-ATAGAAATAATTCCCAATTGATTTTTGGAACCAAACATGTCTGTATAGAGT
* * * *
2614374 CAGGAATTTGAAGACATTCTGACTGATATTGTTGCATCTGATGAAACCGTTCAACAAACGTGACC
390 CAGGAATCTGAAGACATTCTAACTGATATTCTTGCATATGATGAAACCGTTCAACAAACGTGACC
* *
2614439 CACTAGCAGTATATGATAAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACT
455 CACTAGCAGTATATGATAAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTACAAGACT
*
2614504 GTCTTGAAGCTGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTATAT
520 ATCTTGAAGCTGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTATAT
2614569 ATATATTCAAAATGT
585 ATATATTCAAAATGT
**
2614584 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATGAGGTCACCCTTCAT
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATGAAATCACCCTTCAT
* * *
2614649 TGCATGCTTCCTTGAAGAATATGAACAACCCTTGAATTTAGATGATAACTATCATCTTTGAATAC
66 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGAATTTAGATGATAACAATCAGCTTTGAATAC
* * ** *
2614714 ATTGAATGTGTGAATTAAGAGTCCTTCAAAGGCTTGTTACTTGGCTGAAGTTGAAAACACTCTCC
131 ATTGAATGTGTGAATCAAGAGTCCTGCAAAGGCTACTCACTTGGCTGAAGTTGAAAACACTCTCC
*
2614779 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTTCCGTAACAAAATTCCAG-ATGGCAC
196 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCAT-GCAC
* * *
2614843 TGTCTTGAATAAATCAATCATATCTCAAGCTCCATATATCGGATTGAGGTGATTCAAAAGGCATT
260 TGTCTTCAATAAATCAATCATATCTCAAGCTCCAGATATCGGATTGAGGTGATTCAAAAGGCAAT
* * *
2614908 GAAAAGATAATAG-ATAGATGAATATTTCCCAATTG-TTTTCTGGAACCAAACATG-CATGTATT
325 GAAAAGATAAGAGAATAGA--AATAATTCCCAATTGATTTT-TGGAACCAAACATGTC-TGTATA
* *
2614970 GCA-TCCA-GAATCTGAAGACATTCTAACTGATATTCTTGCATATGTTGAAACCGTTCAACGAAC
386 G-AGT-CAGGAATCTGAAGACATTCTAACTGATATTCTTGCATATGATGAAACCGTTCAACAAAC
* *
2615033 GTGACCCACTAGCTA-TATTTGATGAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTA
449 GTGACCCACTAGC-AGTATATGATAAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTA
* *
2615097 CAAGACTATCTTGAAGAC-GATAAAGTTCTACAAGAGAACTAGAATGAAAGGAACCTCTCAAAGA
513 CAAGACTATCTTGAAG-CTGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGA
2615161 TGTTATATATATAT
577 TGTTATATATATAT
2615175 ATATATATTC
Statistics
Matches: 533, Mismatches: 49, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
598 5 0.01
599 6 0.01
600 517 0.97
601 5 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (599 bp):
GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATGAAATCACCCTTCAT
TGCATGCTCCCTTGAAGAATATGAACAACCCTTGAATTTAGATGATAACAATCAGCTTTGAATAC
ATTGAATGTGTGAATCAAGAGTCCTGCAAAGGCTACTCACTTGGCTGAAGTTGAAAACACTCTCC
CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCATGCACT
GTCTTCAATAAATCAATCATATCTCAAGCTCCAGATATCGGATTGAGGTGATTCAAAAGGCAATG
AAAAGATAAGAGAATAGAAATAATTCCCAATTGATTTTTGGAACCAAACATGTCTGTATAGAGTC
AGGAATCTGAAGACATTCTAACTGATATTCTTGCATATGATGAAACCGTTCAACAAACGTGACCC
ACTAGCAGTATATGATAAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTACAAGACTA
TCTTGAAGCTGATAAAGTTCTACAAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTATATA
TATATTCAAAATGT
Found at i:2616064 original size:16 final size:16
Alignment explanation
Indices: 2616043--2616082 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
2616033 TAAGCAACAT
2616043 ATGAAAAACTCAAAAG
1 ATGAAAAACTCAAAAG
2616059 ATGAAAAACTCAAAAG
1 ATGAAAAACTCAAAAG
2616075 ATGAAAAA
1 ATGAAAAA
2616083 TTCTCATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.65, C:0.10, G:0.12, T:0.12
Consensus pattern (16 bp):
ATGAAAAACTCAAAAG
Found at i:2619732 original size:808 final size:807
Alignment explanation
Indices: 2614584--2620420 Score: 7784
Period size: 803 Copynumber: 7.2 Consensus size: 807
2614574 TTCAAAATGT
* **
2614584 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATGAGGTCACCCTTCAT
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* * * * *
2614649 TGCATGCTTCCTTGAAGAATATGAACAACCCTTGAATTTAGATGATAACTATCATCTTTGAATAC
66 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAACTTTGAATGC
* * * * * *
2614714 ATTGAATGTGTGAATTAAGAGTCCTTCAAAGGCTTGTTACTTGGCTGAAGTTGAAAACACTCTCC
131 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCC
* *
2614779 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTTCCGTAACAAAATTCCAG-ATGGCAC
196 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCT-GCAC
* * **
2614843 TGTCTTGAATAAATCAATCATATCTCAAGCTCCATATATCGGATTGAGGTGATTCAAAAGGCATT
260 TGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATT
* * * * *
2614908 GAAAAGATAATAGATAGATG-AATATTTCCCAATTGTTTTCTGGAACCAAACATG-CATGTATTG
325 GGAAAGATAAGAGATAGA-GAAATAATT-CCAATTGATTTCTGGAACCAAACATGTC-TGTATAG
* * *
2614971 CATCCAGAATCTGAAGACATTCTAACTGATATTCTTGCATATGTTGAAACCGTTCAACGAACGTG
387 CAT-CAGAATTTGAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCAACGAACGTG
* * *
2615036 ACCCACTAGCTATATTTGATGAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTACAAG
451 ACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAG
* * * *
2615101 ACTATCTTGAAGACGATAAAGTTCTACAAGAGAACTAGAATGAAAGGAACCTCTCAAAGATGTTA
516 ACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTC--A-A----A
* * *
2615166 TATATATATATATATATTCAAAATGTGTATCTACTAATGATCCCAAAGGTG-CTATTTATAGTAT
574 TATGT-T-T-TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTAT
* ** *
2615230 TTCTAAGCAGCATATGAAAAGACTCAAAAAATGAAATTTTCTCATCAATTTAGCAATAAAATGAA
636 TTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCA
2615295 CTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGATGAAT
701 CTTGAATGC-TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGATGAAT
* *
2615360 CTAGACAATTTGAAGCTTAATTTGGCCATAATTTCGTCCAAGT
765 CTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
*
2615403 GGTGAAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* * * *
2615468 TGCATCCTCCCTTGAAGTATATGAACAACCCTTGACTTTAGATGATAATAACCAGA-TTTGAATG
66 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCA-ACTTTGAATG
* * * * *
2615532 CCTTGAATTTGTGAATTAAGAGTCCTTCAATGTCTTGTCATTTGGCTGAAGTTGAAAAGACTCTC
130 CCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTC
** *
2615597 CCTAAGTTCAAA--C-T-C----C-TCCATGCATAAAATTCCCGTAACAAAATT-CAGCTTGCAC
195 CCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCAC
* * * *** * * *
2615652 TATCTTCAATAAATTGATCATATCTGATTATCCCAATATCGAATTGAGGTGATTCAATAGGCATT
260 TGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATT
* * * *
2615717 GAAAAGATAAGAGATAGATG-AATAATTCCAAATTGATTTCTTGAACCAAAAATGTCTGTATCGC
325 GGAAAGATAAGAGATAGA-GAAATAATTCC-AATTGATTTCTGGAACCAAACATGTCTGTATAGC
* * * * * *
2615781 AACCAGATTTTGAAGACATTCAGACTGATATTCATGCATTTGATGAAAACGTTCAACGAACGTGA
388 -ATCAGAATTTGAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCAACGAACGTGA
* * * * *
2615846 GCCACTAGCTACATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACAACAAGG
452 CCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGA
* * * * * *
2615911 CTATGTTCAAGCTGATAAGGTTCTACAAGAGAACAGGAATGAAAGCAACCTCTC-AATGATGTTT
517 CTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAAT-ATGTTT
* * * *
2615975 TATATATTCAAAATTTGTATATACATATGATCCCGAAGGTGCCTATTTATAGTATTTCTAAGCAA
581 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAG
*
2616040 CATATGAAAAACTCAAAAGATGAAAAACTCAAAAGATGAAAAATTCTCATCAATATAGCAATAAA
646 CATATG---------AAA-A-G----ACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAA
* *
2616105 ATGCACTTGAATGCTTTGTGTTTCTTATCATT-AAGGTTGGATGAATATTCTAGATCATTTTGGG
696 ATGCACTTGAATGC-TTGTCTTTCTTATC-TTCAAGGTTGGCTGAATATTCTAGATCATTTT-GG
* *
2616169 GATGAATCTAGACAAATTGAAGCTTAATTTGGCCATAATTTCGTCCAAGG
758 GATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
* *
2616219 GGTGTAAGACTCTTTCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
*
2616284 TGCATGCTCCCTTGAAG-A-AT-----A----T--C----------AACAATCAGCTTTGAATGC
66 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAACTTTGAATGC
* * * ** **
2616326 CTTGAATGTGTGAATTAAGAGTTCTTCAACGGCTTCTCACTTGTCTGATGTTGAAAAGACTCTCC
131 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCC
*
2616391 CTTGGTTCAAACTCATCCAAGTCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACT
196 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACT
2616456 GTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTG
261 GTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTG
* ** * *
2616521 GAAAGATAAGAGAAAGATTAATAATTTCCAATTGATTTCTGAAACCAAAAATGTCTGTATCA-CA
326 GAAAGATAAGAGATAGAGAAATAA-TTCCAATTGATTTCTGGAACCAAACATGTCTGTAT-AGCA
* * * * *
2616585 TCTAGAATCTGAATACATTCTTACTGATATTCTAGCATATGATGAAACCGTTCAATGAACGTGAC
389 TC-AGAATTTGAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCAACGAACGTGAC
* *
2616650 CCACTAGCTATATATGATGAGCTAGGAACTAACACTATAACAAAAGGAAATGAAGACTACAAGAC
453 CCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGAC
* *
2616715 TATCTTGAAGCCGATAAAGTTCTACAAGAGAATAAGAATTAAAGCAACCTCTCAAAGATGTTTTA
518 TATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAATATGTTTTA
* * * * * * *
2616780 CATGTTCATAATGTGTATATACAAATTATCCCAATGGTGCCTATTTATAGTATTTTTAAGCAACA
583 TATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* * * * *
2616845 TATGAAAAGTCTCAAAAGATGAACATTTGTCATCAATTTAGCAATAAAATTCACTTGAATGCTTT
648 TATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGC-TT
* * *
2616910 GTATTTCTTATCTTGAAGGTTGGCTGAATATTCTAGATCATTTTGGGATTGAATCTACACAATTT
712 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGA-TGAATCTAGACAATTT
*
2616975 GAAGCTTAATTTGGCCTTAATTTCGTCCATGG
776 GAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
* * * * *
2617007 GATGGAAGACTCGTGCTATTCAATGCAGAAAATTGTCTTAATAAGTAAATTAAATCACCCTTCAT
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* *
2617072 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATGC
66 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAACTTTGAATGC
* *
2617137 CTTGAATGTGTGAATTAAGAGTCC-TCAATGGCTTGTCACTTGGATTAAATTGAGAAGACTCTCC
131 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCC
* * ** **
2617201 CTTGGTACAAACTCATCCAAATCATCCATGCGTAAAATTCTAGTAACAAAATTCTTGCCTGCACT
196 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACT
*
2617266 GTCTTC-----ATCGATCATATCTCAAGCTCCC-ATTATCGGATTGGGGTGATTCAAAAGGCATT
261 GTCTTCAATAAATCGATCATATCTCAAGCTCCCGA-TATCGGATTGAGGTGATTCAAAAGGCATT
** * * * *
2617325 GGAAAGATAAGAGATAGAGAAATAATTATGAATTGATTTCTGGAACCAAACATGTGTGTGTCGAA
325 GGAAAGATAAGAGATAGAGAAATAATT-CCAATTGATTTCTGGAACCAAACATGTCTGTATAGCA
* * * * * *
2617390 TCCAGAGTTTGAGGATATTATGACT-AGTATTCTTGCATCTGATGAAACCGTTCAACGAATGTGA
389 T-CAGAATTTGAAGACATTCTGACTGA-TATTCTTGCATATGATGAAACCGTTCAACGAACGTGA
* * * * **
2617454 CGCACTAGGTATATATGATGAGCTAGGAAGCAACGTTATAATGAAAGGAAATGAAGACTACAAGA
452 CCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGA
* * ** * *
2617519 CTATATTTAAGTTGATAAGGTTCTACAAGATAACAAG-ATTGAAAGCAACCTCTC-AATGATGTT
517 CTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATT-AAAGCAACCTCTCAAAT-ATGTT
* * *
2617582 TTATATATTCAAAATGTGTGTATACATATGATCCCAAAGGTGCCTATTTATAGTATTTCTATGCA
580 TTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCA
*
2617647 GCATATGAAAAGACTC--AAGTTGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGC
645 GCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGC
* * *
2617710 TTTGTCTTTCTTATCTTTAAGGTTGGATGAATATTCTAGATCATTTGGGGGATGAATCTAGACAA
710 -TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTT-TGGGATGAATCTAGACAA
*
2617775 TTTAAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
773 TTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
*
2617810 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAAAT-GCCCTTCA
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATT-AAATCACCCTTCA
* * *
2617874 TTGCATGCTCCCATGAAGAATATGAACAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATG
65 TTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAACTTTGAATG
* * * * *
2617939 CCTTCAATGTATGAA-TAAGATTCCTTCATTGGCTTGTCACTTGGATGAAATTGAGAAGACTCTC
130 CCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTC
**
2618003 CCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCAACAC
195 CCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCAC
* * * *
2618068 TGTCTTCAATAAATCGATCATATATCAAGCTCCCAATATCAGATTGAGGTGATTCTAAAGGCATT
260 TGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATT
* * * * *
2618133 GGAAAGATAAAAGACAGAGAAATAATTCTCAATTGATTTATGGAACAAAACATGTCTGTATAACA
325 GGAAAGATAAGAGATAGAGAAATAATTC-CAATTGATTTCTGGAACCAAACATGTCTGTATAGCA
* * * * *
2618198 TCAGGAATTTGAATATATTCTTACTGATATTGTTGCATCTGATGAAACCGTTCAACGAACG-GAA
389 TCA-GAATTTGAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCAACGAACGTG-A
* * *
2618262 CCCACTACCTATATATGATGAGCTATGAAACAACGCTATAACAAAAGGAAATGAAGACTACAAGA
452 CCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGA
* * * * *
2618327 CTATCATGAAGCCGATAAAGTTCTAAAAGAGAACAAGAATTAAAGAAATCTCTCAAAGATGTTTT
517 CTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAATATGTTTT
* * * * *
2618392 ATATATTCAAAATATGTGTATATAAATGATCCCAAAGGTGCCTATTTATAGTATTTCAAAGTAGC
582 ATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGC
2618457 ATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTT
647 ATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGC-T
* *
2618522 TGTCTTTCTTATCTTTAAGGTTGGCTGAATA-T-T--AT--TTTGGGGATGAATCTAG-CAATTT
711 TGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGATGAATCTAGACAATTT
* *
2618580 AAAGATTAATTTGGCCTTAATTTCGTCCAAGG
776 GAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
** *
2618612 GGTGGAAGACTCTTATTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTTAT
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* *
2618677 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAAT-ATAACAATCAGCTTTGAATA
66 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAG-ATGATAACAATCAACTTTGAATG
2618741 CCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATT-AAGAAGACTCT
130 CCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAA-AAGACTCT
* * *
2618805 CCCTTGGTTCAAACTCATCTAAATCATCCATGCATAAAATTTCCATAACAAAATTCCAGCCTGCA
194 CCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCA
* *
2618870 ATGTCTTCAATAAATCGATCATATCTCAAGCTCCGGATATCGGATTGAGGTGATTCAAAAGGCAT
259 CTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCAT
* *
2618935 TGGAAAGATAAGAGACAGAGAAATAATTGCCAATTTATTTCTGGAACCAAACATGTCTGTATAGC
324 TGGAAAGATAAGAGATAGAGAAATAATT-CCAATTGATTTCTGGAACCAAACATGTCTGTATAGC
* * * *
2619000 ATCAGGAATTTGAAGATATTCTGATTGATATTGTTGCATTTGATGAAACCGTTCAACGAACGTGA
388 ATCA-GAATTTGAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCAACGAACGTGA
* * * *
2619065 CCCAGTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGGAAACGAAGACAACAAGA
452 CCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGA
* * * * * *
2619130 CTATCTTGACGCTGATAAAGTTATACAAGAGAACAAGAATTAATGAAACCTCTCAAATATGTCTT
517 CTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAATATGTTTT
*
2619195 ATATATTCAAAATATGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGC
582 ATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGC
* *
2619260 ATATGAAAAGACTCAAAATATGAAAAATTCTCATTAATTTAGCAATAAAATGCACTTGAATGC-T
647 ATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTT
* * ** *
2619324 GTCTTTATTATCTTCAACGTTAACTGAATATTCTAGATCATTTTGGGATGAATCTAGATAATTTG
712 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGATGAATCTAGACAATTTG
* *
2619389 AAGCTTAATTTGGCCTTAATATCGTCCAAGT
777 AAGCTTAATTTGGCCTTAATTTCGTCCAAGG
* *
2619420 GCTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGTATTAAATCACCCTTCAT
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* * * * *
2619485 TGCATGCTCCCTTGAAGTATATGAACAACCCCTGACTTTAGATGATAACGACCAATTTTGAATGC
66 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAACTTTGAATGC
* *
2619550 CTTGAATGTGTGAATTAAGAGTCCTTTAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCC
131 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCC
* *
2619615 CTTGGTTCAAACTCATCCAAATCATCCATGCGTAAAATTCCCGTAACAAAATTCCTGCCTGCACT
196 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACT
*
2619680 GTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGGGGTGATTCAAAAGGCATTG
261 GTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTG
* * * * *
2619745 GAAAGATAAGAGATATAGAAATAATTCACAATTGATTTCTGGAACAAAAAATTTCTGTATCGCAT
326 GAAAGATAAGAGATAGAGAAATAATTC-CAATTGATTTCTGGAACCAAACATGTCTGTATAGCAT
* * * *
2619810 CAAGAGTTTGAATACATTCTGACTAATATTCTTGCATATGATGAAACCGTTTAACGAACGTGACC
390 C-AGAATTTGAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCAACGAACGTGACC
* *
2619875 AACTAGGTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACT
454 CACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACT
* * * *
2619940 ATGTTGAAGCCGATAAGGTTGTACAAGAGAACAAGAATGAAAGCAACCTCTC-AATGATGTTTTA
519 ATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAAT-ATGTTTTA
* * *
2620004 TATATTCAAAATGTGTATATACATATAATCCAAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
583 TATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCA
* * * *
2620069 TATGAAAAGTCTCAAAAGATTAAAAATTTTCATCAATTTAGCAATAAAATGCACTTGAATACTTT
648 TATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGC-TT
* * * * * *
2620134 GTCTTTCATATCTTCATGGTTGGCTGAATTTTCTAGATCAATTTGGGAATGAATTTAGACAATGT
712 GTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGG-ATGAATCTAGACAATTT
2620199 GAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
776 GAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
* * *
2620231 GGTCGAAGACTCTTGCTATTCCATGCTGAAAATTGTCATAATAAGTG---TAAATCACCCTTAAT
1 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* * *
2620293 TGCATGCTTCCTTGAAGAATATGAACAAACCTTGACTTTAGATTATAACAATCAACTTTGAATGC
66 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAACTTTGAATGC
* *
2620358 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCT
131 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCT
2620421 TGAAGATATT
Statistics
Matches: 4436, Mismatches: 472, Indels: 231
0.86 0.09 0.04
Matches are distributed among these distances:
787 6 0.00
788 208 0.05
789 1 0.00
790 2 0.00
792 1 0.00
793 82 0.02
794 3 0.00
795 2 0.00
796 1 0.00
797 1 0.00
799 37 0.01
800 29 0.01
801 35 0.01
802 209 0.05
803 1234 0.28
804 28 0.01
805 328 0.07
806 3 0.00
807 25 0.01
808 1129 0.25
809 284 0.06
810 246 0.06
811 132 0.03
814 2 0.00
815 92 0.02
816 132 0.03
817 1 0.00
819 183 0.04
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (807 bp):
GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAACTTTGAATGC
CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCC
CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACT
GTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTG
GAAAGATAAGAGATAGAGAAATAATTCCAATTGATTTCTGGAACCAAACATGTCTGTATAGCATC
AGAATTTGAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCAACGAACGTGACCCA
CTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGACTACAAGACTAT
CTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTAAAGCAACCTCTCAAATATGTTTTATAT
ATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATAT
GAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTGTCT
TTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGATGAATCTAGACAATTTGAAGC
TTAATTTGGCCTTAATTTCGTCCAAGG
Found at i:2620452 original size:3 final size:3
Alignment explanation
Indices: 2620444--2620547 Score: 181
Period size: 3 Copynumber: 34.7 Consensus size: 3
2620434 TTTTTATCCA
*
2620444 TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
2620492 TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2620540 TAT TAT TA
1 TAT TAT TA
2620548 AATATATATT
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 95 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:2622710 original size:24 final size:23
Alignment explanation
Indices: 2622670--2622715 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
2622660 TAATTTTATA
2622670 TATATATATATACATATTATTTT
1 TATATATATATACATATTATTTT
* *
2622693 TATAGTATTTATATATATTATTT
1 TATA-TATATATACATATTATTT
2622716 CATTTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (23 bp):
TATATATATATACATATTATTTT
Found at i:2633284 original size:1 final size:1
Alignment explanation
Indices: 2633278--2633353 Score: 53
Period size: 1 Copynumber: 76.0 Consensus size: 1
2633268 ATGCTTGAAG
* * * * * * * * **
2633278 AAAAAAAAAGAAAAAAAGAAAGAAAAAAAGAAAGAAAAGAAAAAAAAGAAAAAAAGAAAAAAGGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
2633343 AAAAAGAAAAA
1 AAAAAAAAAAA
2633354 GGGGGTCAAG
Statistics
Matches: 55, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (1 bp):
A
Found at i:2633293 original size:9 final size:9
Alignment explanation
Indices: 2633279--2633339 Score: 79
Period size: 9 Copynumber: 6.7 Consensus size: 9
2633269 TGCTTGAAGA
2633279 AAAAAAAAG
1 AAAAAAAAG
*
2633288 AAAAAAAGAA
1 AAAAAAA-AG
2633298 AGAAAAAAAG
1 A-AAAAAAAG
*
2633308 AAAGAAAAG
1 AAAAAAAAG
2633317 AAAAAAAAG
1 AAAAAAAAG
2633326 -AAAAAAAG
1 AAAAAAAAG
2633334 AAAAAA
1 AAAAAA
2633340 GGAAAAAAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
8 8 0.18
9 27 0.60
10 4 0.09
11 6 0.13
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:2633346 original size:9 final size:8
Alignment explanation
Indices: 2633275--2633353 Score: 92
Period size: 8 Copynumber: 10.0 Consensus size: 8
2633265 ATTATGCTTG
2633275 AAGAAAAA
1 AAGAAAAA
*
2633283 AA-AAGAA
1 AAGAAAAA
*
2633290 AA-AAAGA
1 AAGAAAAA
2633297 AAGAAAAA
1 AAGAAAAA
2633305 AAGAAAGAA
1 AAGAAA-AA
2633314 AAGAAAAAA
1 AAG-AAAAA
2633323 AAGAAAAA
1 AAGAAAAA
2633331 AAG-AAAA
1 AAGAAAAA
*
2633338 AAGGAAAA
1 AAGAAAAA
2633346 AAGAAAAA
1 AAGAAAAA
2633354 GGGGGTCAAG
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
7 18 0.29
8 31 0.50
9 10 0.16
10 3 0.05
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAGAAAAA
Found at i:2633354 original size:38 final size:38
Alignment explanation
Indices: 2633279--2633352 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
2633269 TGCTTGAAGA
2633279 AAAAAAAAGAAAAAAAGAAAGAAAAAAAGAAAGAAAAG
1 AAAAAAAAGAAAAAAAGAAAGAAAAAAAGAAAGAAAAG
*
2633317 AAAAAAAAGAAAAAAAGAAA-AAAGGAAA-AAAGAAAA
1 AAAAAAAAGAAAAAAAGAAAGAAA-AAAAGAAAGAAAA
2633353 AGGGGGTCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
37 11 0.32
38 23 0.68
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (38 bp):
AAAAAAAAGAAAAAAAGAAAGAAAAAAAGAAAGAAAAG
Found at i:2633721 original size:19 final size:18
Alignment explanation
Indices: 2633682--2633727 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
2633672 CTATTTCAAG
2633682 TTCAATTTA--TTTGAAA
1 TTCAATTTATTTTTGAAA
*
2633698 GTCAATTTATTTTTGGAAA
1 TTCAATTTATTTTT-GAAA
2633717 TTCAATTTATT
1 TTCAATTTATT
2633728 CTTTTCTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 8 0.32
18 3 0.12
19 14 0.56
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.52
Consensus pattern (18 bp):
TTCAATTTATTTTTGAAA
Found at i:2634694 original size:82 final size:83
Alignment explanation
Indices: 2634404--2634687 Score: 507
Period size: 83 Copynumber: 3.4 Consensus size: 83
2634394 TGGATTTGTT
2634404 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAATCAAGCATTGAGT
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAATCAAGCATTGAGT
2634469 TTAGAAGATGAATTTGCC
66 TTAGAAGATGAATTTGCC
2634487 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAATCAAGCATTGAGT
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAATCAAGCATTGAGT
* *
2634552 TTGGAAGATGAATTTGCT
66 TTAGAAGATGAATTTGCC
* * *
2634570 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTGGACAGAA-CAATCATTGAGT
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAATCAAGCATTGAGT
2634634 TTAGAAGATGAATTTGCC
66 TTAGAAGATGAATTTGCC
*
2634652 AATAGCATCTTCTGGAATTGTTCTTTGAGTTATCTG
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTG
2634688 GTTTGGTATG
Statistics
Matches: 193, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
82 62 0.32
83 131 0.68
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (83 bp):
AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTGGACAGAATCAAGCATTGAGT
TTAGAAGATGAATTTGCC
Found at i:2635674 original size:112 final size:113
Alignment explanation
Indices: 2635375--2635691 Score: 519
Period size: 113 Copynumber: 2.8 Consensus size: 113
2635365 TCATTTGAAA
*
2635375 GATTAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1 GATTATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
* *
2635440 TAATGAGAAGAATTTGTTCAACCTTTTACCTGAATCCATCATTTGAGG
66 TAATAAGAAGAATTTGTTCAACCTTTTACCTGAATCCATCAATTGAGG
*
2635488 GATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1 GATTATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
* * *
2635553 TAATTAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAATTGATG
66 TAATAAGAAGAATTTGTTCAACCTTTTACCTGAATCCATCAATTGAGG
* * *
2635601 GATTATCTTTTTCGGAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCA
1 GATTATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
* *
2635665 TAATAAGAAGAACTTGTTCAACTTTTT
66 TAATAAGAAGAATTTGTTCAACCTTTT
2635692 GCATAATTCT
Statistics
Matches: 191, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
112 70 0.37
113 121 0.63
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (113 bp):
GATTATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
TAATAAGAAGAATTTGTTCAACCTTTTACCTGAATCCATCAATTGAGG
Found at i:2636018 original size:3 final size:3
Alignment explanation
Indices: 2636010--2636107 Score: 169
Period size: 3 Copynumber: 32.7 Consensus size: 3
2636000 TTTTTATCCA
* *
2636010 TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
2636058 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2636106 TA
1 TA
2636108 AATATATATT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 89 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:2639291 original size:811 final size:808
Alignment explanation
Indices: 2638062--2647121 Score: 8821
Period size: 811 Copynumber: 11.2 Consensus size: 808
2638052 CATCCAAAGC
* *
2638062 ATATCAGATTGTGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
* * *
2638127 ATTTCTTGAACCAAAAATGTCTGTATCACATCCA-AATTTTGAAGACATTCTGACTGATATTTTT
66 ATTTC-TGAACCAAACATGTCTGTATCGCATCCAGAA-TTTGAAGACATTCTGACTGATATTCTT
* * * *
2638191 GCATTTGATGAAACTGTTCAACGAACATGACCCACTAGCTATATATGATGAGCTAGGAACCAACG
129 GCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACA
* * ** * *
2638256 CTATAACAAAATGAAATGAAGAC-AACAAGGGTATGTTGAAGCCGATAAGGTTCTACAAGAGAAC
194 CTATAACAAAAGGAAATGAAGACTAA-ATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
* * * *
2638320 AAGAATGAAAGCAACATCTCAAGGATTTTTTATATATTCAAAATGTGTATCTACAAATGATCCCA
258 AAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCA
* * * *
2638385 AAGATGT-CTATTTATAGTATTTCTATGCAGCATATGAAAAGACTCAAAAGATGAAAACTTCCCA
323 AAGGT-TCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCA
* *
2638449 TCAATTTGGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACGTTGGCTGAATATT
387 TCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATT
* **
2638514 CTAGATCATTTTGGGGATGAATCTATACAATTTGAAGCTTAATTTGGCCTTAATTTCAACCAAGG
452 CTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
* * *
2638579 GGTGGAAGACTCTTGCTATTCCATGCAGACAATTGTGTTAATAAGTGAATTAAATCACCCTTCAT
517 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* * *
2638644 TGCATGCTCCCTTAAAGAGTATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGC
582 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGC
*
2638709 CTTGAATGTGTGAATTAAGTGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCTCC
647 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCTCC
*
2638774 CTTGGTTCAAACTCATCCAAAGCATCGATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACG
712 CTTGGTTCAAACTCATCCAAA-CATC-ATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACT
2638839 GTCTTCAATAAATCGATCATATCTCAAGCTCCCG
775 GTCTTCAATAAATCGATCATATCTCAAGCTCCCG
* *
2638873 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATGGATGAATAATTTCCAATTG
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
* * * * *
2638938 ATTTCTGAAATCAAACATGTCTGTATCACATCTAGAATATGAAGACATTCTGAATGATATTCTTG
66 ATTTCTG-AACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTTG
2639003 CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACAC
130 CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACAC
* ** * * **
2639068 TATAATAAAACAAAATGAAGACTAAATGACTATATTGAAGCCAATAAAGTTGAACAAGAGAACAA
195 TATAACAAAAGGAAATGAAGACTAAATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAA
** * * *
2639133 GAATGAATTCAACCTCTCAAAGATGTTTTATATTTTCAAAATGTGCATATACATATGATCCCAAA
260 GAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAA
* * * * * *
2639198 GGTTCCTATTTATAGCAGTTCTATGCAGCATATGAAATGACTTACAAGATGAAAAATTCTCATCA
325 GGTTCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCA
* * * *
2639263 ATTTAGCAATAAAATGCACTTAAATGCTTT-TCCTTTCTTATCTTAAAGGTTGGATCAATATTCT
390 ATTTAGCAATAAAATGCACTTGAATGCTTTGT-CTTTCTTATCTTCAAGGTTGGCTGAATATTCT
* * *
2639327 AGATCATTTTGGTGACGAATGTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGG
454 AGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGG
2639392 TGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTG
519 TGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTG
* *
2639457 CACGCTCCCTTGAAGAATATGAACAACCCTTAACTTTAGATGATAACAATCAGCTTTGAATGCCT
584 CATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCT
* * * *
2639522 TGAATGTGTGAATTAAGAGTCCTTAAATGTCTTGTCACTTGGATCAAGTTGAAAAGACTCTCCCT
649 TGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCTCCCT
* * * *
2639587 TGGTACAAACTCAT-----C--CATGCATAAAATTCTCGTAACAAAATT-AAGCCTGCACTATCT
714 TGGTTCAAACTCATCCAAACATCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCT
2639644 TCAATAAATCGATCATATCTCAAGCTCCCG
779 TCAATAAATCGATCATATCTCAAGCTCCCG
* *
2639674 ATATCGAATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGATAGATGAATAATTCCCAATTG
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
* * * * *
2639739 ATTTCCTGAACCAAACCTGTCTGTATAGCATCCAGATTTTGAAGACTTTCTAAC--ATATTCTTG
66 ATTT-CTGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTTG
*
2639802 CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGC
130 CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACAC
*
2639867 TATAACAAAAGAAAATGAAGACTAAATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAA
195 TATAACAAAAGGAAATGAAGACTAAATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAA
* ** *
2639932 GAACGAATTCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACATATGATCCCAAA
260 GAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAA
* * * *
2639997 GGTTCCTATTTATAGCATTTCCAAGCAGCATATGAAATGACTCAAAAGAAGAAAAATT-TGCATC
325 GGTTCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCT-CATC
* * * *
2640061 AATTTAGCAATAAAATGCACTTGAATGCTTTGCCTTTCTTATCTTTAAGGTTCGCTTAATATTCT
389 AATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCT
* *
2640126 AGATCATTTTGGTGATGAAACTAGGA-AATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGG
454 AGATCATTTTGGGGATGAATCTA-GACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGG
2640190 GTGGAAGA--CTTGCTATTCCATGCTGAAAAGTT-TCTTAATAAGTGAATTAAATCACCCTTCAT
518 GTGGAAGACTCTTGCTATTCCATGCTGAAAA-TTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* * * * *
2640252 TGCATGTTCCCTTGAAGATTATGAAAAACCCTTGAATTTAGATGATAACAATCAGCTTTGAATCC
582 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGC
* * ** * *
2640317 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGATTGTCACTTGGCTTAAGTTTTAGAGACTTTCC
647 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCTCC
* *** * * * *
2640382 CTTGATTCAAACTCATCCAAATCATCCATGCAT-AAATCTCTATTAATAAAATTTCAGCCTGTAT
712 CTTGGTTCAAACTCATCCAAA-CAT-CATGCATAAAAT-TCCCGTAACAAAATTCCAGCCTGCAC
* * * *
2640446 TGTCCTCAATAAATTGAACACATCTCAAGCTCCCG
774 TGTCTTCAATAAATCGATCATATCTCAAGCTCCCG
* * *
2640481 ATATCGGATTGAGGTGATTCAAAGGGAATTGGAAAGATAAGAGATAGATAAATAATTCCCAATTG
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
* * * * *
2640546 ATTTCTGGAAACAAACATGACTGTATCACATCCAAAATCTGAAGA-ATTTCTGACTGATATTCTT
66 ATTTCT-GAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACA-TTCTGACTGATATTCTT
* * * * *
2640610 GTATATGATGAAACCGTTTAACGAACGTGACCCACTAGCTATATTTGATGAGCTAGGAACAAACA
129 GCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACA
* * * * *
2640675 CTATAACGAAAGGAAATGAAGACCAGAA-GACTATCTTGAAGCTGATAAAGTTCTTCAAGAAAAC
194 CTATAACAAAAGGAAATGAAGACTA-AATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
* * *
2640739 AAGAATGAAAGAAACCTCTCAAAGATGTTTTATATATATATATATATATTCAAAATGTGAATGTA
258 AAGAATGAAAGCAACCTCTCAAAGATG---------T-T-T-TATATATTCAAAATGTGTATATA
* * * *
2640804 CAAATGATCCCAAAGG-TGCTATTTATAGTATTTTTAAGCAGCATATTAAAAGACTCAATAGATG
311 CAAATGATCCCAAAGGTTCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATG
* * *
2640868 AAAGATTCTCATCAATTTAGCAATAAAGTGCAATTGAATGCTTTGTCTTTCTTATCTTCAAGGTT
376 AAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTT
* *
2640933 GGCTGAATATTCTAGATTATTTTGGGGATGAATCTAGACAATTTGAAGCTTCATTTGGCCTTAAT
441 GGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAAT
* * *
2640998 TTTGTCCAAGGGGTGGAAGACTC-T-CTATTCCATGTTGAAAATTGTATTAATAAGTGAATTAAA
506 TTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAA
* *
2641061 TCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACATTAGATGATAAAAATCA
571 TCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCA
* * * *
2641126 TCTTTGAATACCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTCTCACTTAGCTGAAGTTGA
636 GCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGA
* * *
2641191 AAAGTCTCTCCCTTTGTTCAAACTCAT-----C--CATGCATAAAATTCCCGTAACAAAATTTCA
701 AAAGACTCTCCCTTGGTTCAAACTCATCCAAACATCATGCATAAAATTCCCGTAACAAAATTCCA
* *
2641249 GCCTGCACTATCTTCAATAAATCGATCGTATCTCAAGCTCCCG
766 GCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCG
* * * *
2641292 ATATCGGATTGAGGTGATTCAAAAAGCATTGAAAAGATAAGAGATATATGAATAATTACCAATTG
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
* * *
2641357 ATTTCTTGAACCAAACATGCCTGTATCGCATCCTGATTTTGAAGACATTCTGACTGATATTCTTG
66 ATTTC-TGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTTG
* * * * *
2641422 CATCTGATGAAATCGTTCAACGAACGTGACCCACTAGTTATATATGATAAGCAAGGAACTAACAC
130 CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACAC
* * * * * *
2641487 TATAACAACAGAAAATGAAGACTACAGGACTATCTTGAAGCCGATAAGGTTATACAAGAGAACAA
195 TATAACAAAAGGAAATGAAGACTAAATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAA
* * * ** *
2641552 TAATAAAAGCAACCTCTCAACGATGTTTTATATATTCAAAATGTGTATATACGTATGATCTCAAA
260 GAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAA
* * * * * * * *
2641617 GGTGCCTATTTATAGTATTTCTAAGCAACATTTGAAACGACTCAAAAGTTGAAAAATTATAATTA
325 GGTTCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCA
*
2641682 ATATT-GCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCTGAATATTCT
390 AT-TTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCT
*
2641746 AGATCATTTTGGGGATGAATCTAGACAATTTAAAGCTTAATTTGGCCTTAATTTCGTCCAA-GGG
454 AGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGG
2641810 TGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTG
519 TGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTG
* *
2641875 CATGCTCCCTTGAAGAATATGAACAATCCTTGACATTAGATGATAACAATCAGCTTTGAATGCCT
584 CATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCT
* * * *
2641940 TGAAAGTGTGAATTAAGATTTCTTCAATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCT
649 TGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCTCCCT
2642005 TGGTTCAAACT-AT-----C--CATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCT
714 TGGTTCAAACTCATCCAAACATCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCT
* *
2642062 TCAATAAATTGATCATATCTCAAGCTCCAG
779 TCAATAAATCGATCATATCTCAAGCTCCCG
* * * * * *
2642092 CTAACGGATTGAGGTGATTCAAAAGGCATCGGAAAGATAAAAGATAGCTGAATAATTCACAATTG
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
* * * *
2642157 ATTTTTGGAACCAAACATGTCTGTATCGTATCCAGAATCTGAAGACATTCTGACTGATATTCCTG
66 ATTTCT-GAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTTG
** * * **
2642222 CATCTGATGAAACCGTTCAAATAACGTGACTCACTAGCTATATTTGATGAGAGAGGAACCAACAC
130 CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACAC
* * * * * * *
2642287 TATAACAAAAGGAAATGAACACT-ACTAGACTGTCTCGGAGCTGATAAAGTTCTTCAAGAG-ACA
195 TATAACAAAAGGAAATGAAGACTAAAT-GACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACA
* * *
2642350 AGAATGATAGAAACCTCTCAAAGATGTTTTATATATATTCAAAATGTGTATCTACAAATGATCCC
259 AGAATGAAAGCAACCTCTCAAAGATG-TTT-TATATATTCAAAATGTGTATATACAAATGATCCC
* * * * * * *
2642415 AACGG-TGCTATTTATAATATTTCTAAGCAGCATATGAAAAAACACAAAAGATGAAAAACTCACA
322 AAAGGTTCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCA
*
2642479 TCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTGCTTATCTTCAAGGTTGGCTGAATATT
387 TCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATT
* *
2642544 CTAGATCATTTTGGGGATGAATCTAGAGAATTTGAAGCTTAATTTGGCCATAATTTCGTCCAAGG
452 CTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
* *
2642609 GGTGGAAGAC-C---CTATTCCATGCTGAAAATTGTCTTAATAGGTGAATTAAAGCACCCTTCAT
517 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* * * *
2642670 TGCATGCTTCCTTGAAGAATATGAACAACACTTGA-TATTAGATGATAACAATCATCTTTGAATA
582 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACT-TTAGATGATAACAATCAGCTTTGAATG
* * * *
2642734 CCTTGAATGTGTGAATTAGGAGTCCTTCAATGGTTTCTCCCTTGGCTGAAGTTGAAAAGACTCTC
646 CCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCTC
** * *
2642799 CCTTGGTTCAAACTCAT-C---CA-CA--CATAAAATTCTTGCAACAAAATTCCAGCCTGCACTA
711 CCTTGGTTCAAACTCATCCAAACATCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTG
2642857 TCTTCAATAAATCGATCATATCTCAAGCTCCCG
776 TCTTCAATAAATCGATCATATCTCAAGCTCCCG
* * * *
2642890 ATATCAGATTAAGGTGAATCAAATGGCATT-GAATAGATAAGAGATAGATGAATAATTCCCAATT
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAA-AGATAAGAGATAGATGAATAATTCCCAATT
* * *
2642954 GATTTCTGGAACCAAACATGTCTGTATTGCATTCAGAATTTGAAGACATTCTAACTGATATTCTT
65 GATTTCT-GAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTT
* ** ** * * *** * * * **
2643019 GCATAT--TGTCA-CGGGCTA-GAAACTTGGGTC-CGAGAC-AT-TGGTG-TAAGCGTCCG-ACC
129 GCATCTGATGAAACCGTTCAACG-AACGTGACCCACTAG-CTATAT-ATGATGAGC-TAGGAACC
* * ** * ** * ** ***
2643075 AAGAGGT-T--CAATACTGAGAATCG--GGCTTACCGTGACCA-CCAGACTTAGCC-A-ATTCTT
190 AACA-CTATAACAA-AAGGA-AAT-GAAGAC-TA-AATGACTATCTTGA---AGCCGATAAAGTT
** * ** ** * * * * ** *** * * * ** *
2643132 GGAGAATGCTTAACAAGTCCGTG-AAG-GATCTATTCCAAGGCGTCCGAGAGGA-GCGATGA-GG
246 CTACAA-G-AGAACAAG--AATGAAAGCAACCT-CTCAAAGATGTTTTATA-TATTC-AAAATGT
* *** * * ** * * * * * ** * * *
2643193 GCGATGGGGGC-AGTGTTGTC-AAGGCTCGTGGATTCGAACCAGGACATGTGAGTAG-ATATTTG
304 G-TAT--ATACAAATGATCCCAAAGGTTCCT--ATT--TA-TAGTATTTCTAAGCAGCATA--TG
* * * * * * *** * * * * * ** * *
2643255 TAAGAGAAT-TATACA-G-AATATTGGGCTTGCCCA--GAACCATCAAAT-CTAGCCCG-TTCCT
359 -AAAAGACTCAAAAGATGAAAAATT---CTCATCAATTTAGCAATAAAATGC-A-CTTGAATGCT
* *** * *** * * * ** **
2643313 TGGAGGATTCTAGAAGGAT-AATGTTAGG-TGGGAT-TTCCT---TGATTTAAGGGATTGGGT-T
418 TTG-TCTTTCT--TATCTTCAAGGTT-GGCT-GAATATT-CTAGATCATTTTGGGGA-TGAATCT
* ** * * * * * ** **
2643371 AG---GTGGGAA--TCAATCCTAGCCCTTCATGTAAAACGATCTTAGCCATCGATTGAGAGAGAG
476 AGACAATTTGAAGCTTAAT--TTGGCCTTAAT-T-------TCGT--CCAAGGGGTG-GA-AGA-
** ** * * ** * * ** * *
2643431 CTC-CCCTA-TAAAT--AGAGAGCTCTCCTCCTCA-T---TTGTAATCACCCAATTCCATT-C-T
526 CTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATT-AAATCACCC--TT-CATTGCAT
* ** * * * * * * ** *
2643486 TCTCTTTGTGAGAGAGTAAT-AA-AGCTC-TGAGGCATTT-GCT-CTATTCTTTCTGAG-TTCTT
587 GCTCCCT-TGA-AGAAT-ATGAACAACCCTTGA--C-TTTAGATGATA-ACAATC--AGCTT-TG
* ** * * * * * * * * * * *
2643545 AGTTTCTTTATTCTTGTTGCCTATCT-TG-GTGGC--C-A-GGAGTAGCCACCTTCGTGTTAGCA
642 AATGCCTTGAAT-GTG-TG--AAT-TAAGAGT-CCTTCAATGG-CTTGTCA-CTT-G-GCT-GAA
* * * * * * ** * * * * ** *
2643604 CTTCCACACGA-TAGTCCGAACTTGTGGCTCGGAGT-AGCC--ACGTTGATGTTTAAAGCTT-CC
696 GTT-GAAAAGACT-CTCC---C-T-TGGTTCAAACTCATCCAAAC-ATCATGCATAAA-ATTCCC
* ** * * * *
2643664 G---C--AA-TCCGAAGCCTTG-AGGGCTTGGT-TCCAAT-CTTTG-TGAGT-TCGCACA-CTCA
752 GTAACAAAATTCC--AGCC-TGCA---C-T-GTCTTCAATAAATCGATCA-TATCTCA-AGCTCC
2643717 C-
807 CG
* * ** * *** * * * * *
2643718 -TA--GGCTTG-GGTAAGGCTT-ACTTAGTCGCCGAGAAGACCGATGAGCGTCTA-AAGCATCTA
1 ATATCGGATTGAGGT---GATTCA-AAAGGCATTG-GAA-A--GATAAGAG-ATAGATG-A-ATA
*** * * * * * * * * *
2643777 GGGCCGC-A-CGA--CCCG--TCAGACCTTGACTCTGATATTCTG-A--C-G-GTTTG-AGGCGT
55 ATTCC-CAATTGATTTCTGAACCA-AACATG--TCTG-TA-TC-GCATCCAGAATTTGAAGACAT
** * **** * * * *
2643830 TGAAGTTCTG-GGGGCGTGACAGTATGATGAAACCATTCAACGAATGTGACCCACTAGCTATATA
113 T-CTG-ACTGATATTCTTG-CA-TCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATA
* * * * **
2643894 TGATGATCTAGGAACCAACGCTATAAAAAAAGGAAATGAAGACTTAACAACTATCTTGAAGCCGA
174 TGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTAAATGACTATCTTGAAGCCGA
* *
2643959 TAAAGTTCTA-AGGAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATACATTCAAAATGT
239 TAAAGTTCTACAAGAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGT
* * * * * *
2644023 GTATCTACAAATGATCCCAAAGAG-GCCTATTTATAATATTCCTAAGCACCATGTGAAAAGACTC
304 GTATATACAAATGATCCCAAAG-GTTCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTC
* * ** *
2644087 AAAAGATG-AAAATTCTCATTAATTTAGAAATAAAAAACACTTGAATGCTTTGCCTTTCTTATCT
368 AAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCT
* *
2644151 TTAAGGTTGGCT-ACATATTCTAGATCATTTTGGGGATGAATCTAGATAATTTGAAGCTTAATTT
433 TCAAGGTTGGCTGA-ATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTT
* * *
2644215 GGCCTTAATTTCGTCGAAGTGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTATCTTAATAAG
497 GGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAG
* * * * *
2644280 TGACTTAAAACACCCTTCATTGCATTCTCCCTTGAAGTATATGAACAACCATTGACTTTAGATGA
562 TGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGA
*
2644345 TAACAA-CTAGCTTTGAATG-C--------GTGAATTAAGAGTCCTTCAATTGCTTGTCACTTGG
627 TAACAATC-AGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGG
* * * *
2644400 ATGAAGTTGAAAGGACTCTCCCTTGGTTCAAACTCATCCAAATCACCCATGCATAAAATTCCTGT
691 CTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAA-CA-TCATGCATAAAATTCCCGT
* * *
2644465 AACAAAATTCCAGCCTGCACTGTCTTCAATAAATTGATCACATCTGAAGCTCCCG
754 AACAAAATTCCAGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCG
** * * * * *
2644520 ATATTAGATTGAGGTGATTCAAGAGACATTGAAAATATAAGTGATAGATGAATAATTCCCAATTG
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
** *
2644585 ATTTCTTGAAAAAAACATGTCTGTATCGCATCCAGATTTTGAAGACATTCTGACTGATATTCTTG
66 ATTTC-TGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTTG
* * ** * * *
2644650 CTTCTGATGAAACCATTCAACGAACGTGACTTACTAGCTATATGTAATGAGCTAGGAACCAACGC
130 CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACAC
* * * * *
2644715 TATAACAAAACGAAATGAAGACTAAATGACTATCTTGAAGCCAATAAAGTTATACAACAAAACAA
195 TATAACAAAAGGAAATGAAGACTAAATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAA
* * * * *
2644780 GAATAAAAGCAACCTCTCAAATATGTTTTATATATTCAAAATGTTTATCTAAAAATGATCCCAAA
260 GAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAA
* * * *
2644845 GATGCCTATTTATAGCATTTCTAAGCAGCATATGAAATGACTCAAAAGATGAAAAATTCTCATCA
325 GGTTCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCA
**
2644910 ATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATTCTA
390 ATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTA
* * * * ** *
2644975 GATCATTTTTGGGATGAATCCAAACAATTTGAATCTTAATTTGTACTTAATTTCGTCCAAGTGGT
455 GATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGT
* * *
2645040 GGAAGACTCTTGCTATTCCATGCTGAAAATTATCTTAATAAGTGAACTAAATAACCCTTCATTGC
520 GGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGC
* * * * *
2645105 ATGCTCCCTTGAAGTATTTGAACAACCATTGACTTTAGATGATAATAACCAGCTTTGAATGCCTT
585 ATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTT
* * *
2645170 GAATGTGTGAATTAAGAGTCCTCCATTGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTT
650 GAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCTCCCTT
* * *
2645235 GTTTCAAACTTATCCAAATCACCCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTC
715 GGTTCAAACTCATCCAAA-CA-TCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTC
*
2645300 TTCAATAAATCGATCATATCTCCAGCTCCCG
778 TTCAATAAATCGATCATATCTCAAGCTCCCG
* * * * * * *
2645331 ATATTGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGATATATATGAACAATTCACAATTG
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
* * * *
2645396 ATTTCTTGAACCAAACATGTTTGTATCGCATCCAGATTTTGAAGACATTTTGACTAATATTCTTG
66 ATTTC-TGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTTG
* * *
2645461 CATCTGATGTAACCGTTCAACGAACGTGACCCACTAGCTATATATGATAAGCTAGGAACTAACAC
130 CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACAC
2645526 TATAACAAAAGGAAATGAAGACTACAA-GACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACA
195 TATAACAAAAGGAAATGAAGACTA-AATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACA
* * *
2645590 AAAATGAAAGCAACCTCTCAAAGATGTTTTATATATATTCAAAATGTGAATGTACAAATGATCCC
259 AGAATGAAAGCAACCTCTCAAAGATG-TTT-TATATATTCAAAATGTGTATATACAAATGATCCC
* * * * *
2645655 AAAGGTGCCTATTTATAGCATTTCTAAGCAGCATATGAAATGACTCAAAAGATAAAAAATTATCA
322 AAAGGTTCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCA
**
2645720 TCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAACATTGGCTGAATATT
387 TCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATT
* * * * * *
2645785 TTAGATCATTTTTGGGATGAATCTAGACAATTTGAATCATAATTTGCCCTTAATTTCGTCCAAGT
452 CTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
* * *
2645850 GGTGGAAGA--CTTGCTATTCCAAGTTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCAT
517 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* * * * *
2645913 TGCATGCTTCCTAGAAG-ATAACGAACAACCCTTGACTTTAGATGATAACAACCAGCTTTAAATG
582 TGCATGCTCCCTTGAAGAAT-ATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATG
* * * * **
2645977 CCTTGAATGTGTGAATTAAGAGTCCCTGAATGGCTTGTCACTTGGCTGAAGTTTAAAAAAAAAAA
646 CCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAG-TT--GAAAAGACT
* *
2646042 CTCCCTTGGCTCAAACTCATCCAAATCATTCATGCAT-AAATCTCCCGTTACAAAATTCCAGCCT
708 CTCCCTTGGTTCAAACTCATCCAAA-CA-TCATGCATAAAAT-TCCCGTAACAAAATTCCAGCCT
*
2646106 GCACTGTATTCAATAAATCGATCATATCTCAAGCTCCCG
770 GCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCG
* ** * ** *
2646145 ATATC-GATTGAGGAGATAT-AAAAGGCATCAGAAAGATAAGAGGTAGAAAAATAATTCTCAATT
1 ATATCGGATTGAGGTGAT-TCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATT
* * ** * * * *
2646208 GATTTCTGGAAGCAATCATAACTTTATCGCATGCAGAATTTGAAGACATTCAG-CTGATATTTTT
65 GATTTCT-GAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTT
* *** * **
2646272 GCATCTAATGAAACCGTTCATTAAACGTGACCCACTAACTATATATGATGAGCTAGGAACCAATG
129 GCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACA
* * * *
2646337 CTATAACAGAAGGAAATGAATACTACAA-GACTATCTTGAAGCCAATAAAGTTCTAGAAGAGAAC
194 CTATAACAAAAGGAAATGAAGACTA-AATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
* *
2646401 AAGAATGAAAGTAACCTCTCAAAGATGTTTAATATATTCAAAATGTGTATATACAAATGATCCCA
258 AAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCA
* *
2646466 AAGGTGT-CTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAAACGAAAAATTCTCA
323 AAGGT-TCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCA
2646530 TCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATT
387 TCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATT
* *
2646595 CTAGGTCATTTTGGGGATGAATCTAGACAATTTGAAG-TTAATTTGGCCTTATTTTCGTCCAAGG
452 CTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
* *
2646659 GGTGGAAGACT-TT-CTATTCCATGATGAAAATTGTCTTAATAAGTGAATTAAATTACCCTTCAT
517 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCAT
* * *
2646722 TGCAAGCTTCCC-TGAAGAATATGAACAACCTTTGACTTTAGATGATAACAATCATCTTTGAATG
582 TGCATGC-TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATG
* * * * * *
2646786 CCTCGAATGTGTGAATTAAGAGTCCTTCAAAGGTTTGTCACTTGACTGAAGTTCAAAAGACTTTC
646 CCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCTC
**
2646851 CCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTATCGTAACAAAATTCCA----GC-C
711 CCTTGGTTCAAACTCATCCAAA-CAT-CATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCAC
2646911 TG----C----AA--G------------GCTCCCG
774 TGTCTTCAATAAATCGATCATATCTCAAGCTCCCG
* * *
2646924 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATAAAAAATTCCTAATTG
1 ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
* * * * * * *
2646989 ATTTCCGAAATCAAATATGTTTGTATCTCATCGAGAATCTGAAGACATTCTGACTGATATTCTTG
66 ATTTCTG-AACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTTG
* * * *
2647054 CAGCTGATGAAACCGTTCAAAGAACGTGACACACTAGCTATATTTGATGAGCTAGGAACCAACAC
130 CATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACAC
2647119 TAT
195 TAT
2647122 GTTATATATA
Statistics
Matches: 6767, Mismatches: 1143, Indels: 708
0.79 0.13 0.08
Matches are distributed among these distances:
779 14 0.00
780 86 0.01
781 69 0.01
791 4 0.00
792 4 0.00
793 19 0.00
794 18 0.00
795 22 0.00
796 16 0.00
797 383 0.06
798 213 0.03
799 477 0.07
800 757 0.11
801 506 0.07
802 305 0.05
803 63 0.01
804 22 0.00
805 34 0.01
806 87 0.01
807 141 0.02
808 5 0.00
809 319 0.05
810 213 0.03
811 1500 0.22
812 182 0.03
813 341 0.05
814 115 0.02
815 25 0.00
816 20 0.00
817 28 0.00
818 18 0.00
819 20 0.00
820 367 0.05
821 58 0.01
822 16 0.00
823 29 0.00
824 17 0.00
825 12 0.00
826 23 0.00
827 23 0.00
828 23 0.00
829 34 0.01
830 30 0.00
831 30 0.00
832 18 0.00
833 17 0.00
834 20 0.00
835 17 0.00
836 5 0.00
837 2 0.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (808 bp):
ATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAATTG
ATTTCTGAACCAAACATGTCTGTATCGCATCCAGAATTTGAAGACATTCTGACTGATATTCTTGC
ATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACT
ATAACAAAAGGAAATGAAGACTAAATGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAG
AATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAG
GTTCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAA
TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAG
ATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTG
GAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCA
TGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTG
AATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTG
GTTCAAACTCATCCAAACATCATGCATAAAATTCCCGTAACAAAATTCCAGCCTGCACTGTCTTC
AATAAATCGATCATATCTCAAGCTCCCG
Found at i:2649891 original size:813 final size:797
Alignment explanation
Indices: 2648292--2650153 Score: 2371
Period size: 813 Copynumber: 2.3 Consensus size: 797
2648282 CGAATGTCTT
** * * ** * *
2648292 GAACCAAACATGTTTGTATCGTATCCAGTGTTTGAAGACATTCTGACTGATATTCTTGCATCTGA
1 GAACCAAACAACTCTGTATCGCATCCAGAATATGAAGAAATTCTGACTGATATTCTTGCATCTGA
** * * * * * * *
2648357 TGAAACAATTCAACGAACGTGACCCACTAGCTACATATGATAAGCAAGGAACCAATGA-TATAAC
66 TGAAACCGTTCAACGAATGTGTCCCACTAGCTATATTTGATGAGCTAGGAACCAA-CACTATAAC
* * * *
2648421 AAAAGAAAATGAAGACTACAAGAGTATCTTGAAGCCGATAAGGCTCTACAAGAGAACAAGAATGA
130 -AAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGA
* * * * * * * * *
2648486 AAGCAACCTCTCAATGATATTTTATATATTCAAAATGTGTATATATATATGATCCCAAAGGTGCC
194 AAGAAACCTCTCAAAGATGTTATATATATTCAAAATGTGTATCTACAAATTATCCAAAAGGTGCC
* * * *
2648551 TATTTATAGTATTTCTAAGAAGCATATGAATAGACTCAAATGATGAAAACTTCTCATCAATTTAG
259 TATTTATAGTATTTCTAAGAAGCATATGAAAAGAATCAAAAGATGAAAACTTCCCATCAATTTAG
* * * *
2648616 CAATAAAATGCACTTTAATGCATTGACTTTCTTATTTTTAAGGTTGACTAAATATTCTAGATCAT
324 CAATAAAATGCACTTGAATGCATTGAATTTCTTATCTTCAAGGTTGACTAAATATTCTAGATCAT
* *
2648681 TTTGGGGGATGAATCTAGAGAATTTAAAGATTAATTTGGCCTTAATTTCGTCCAAGTGGTGGAAG
389 TTTGGGGGATGAATCTAGACAATTTAAAGATTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAG
* *
2648746 ACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAACTAAATGACCCTTCATTGAGAATA
454 AC-CTTGCTATTCCATGCTGAAAATTGTCCTAATAAGTGAACTAAATCACCCTTCATTGAGAATA
* *
2648811 TGAACAATCCTTGACCTTAGATGATAACAATAAGCTTCGAATGCCTTGAATGTGTGAATTAAGAG
518 TGAAAAACCCTTGACCTTAGATGATAACAATAAGCTTCGAATGCCTTGAATGTGTGAATTAAGAG
* * *
2648876 TTCTCCAATGCCTTGTCACTTGGATGAAGTTGAAAAGACTCTTCCTTGGTTCAAAGTCATCCAAA
583 TCCTCCAAGGCCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAAGTCATCCAAA
* * *
2648941 TCATCCATGAATAAAATTACCGTAACAAAATTGCAGCCTGCACTGTCTTCAATAAAATGGTCATA
648 TCATCCATGAATAAAATTACCGTAACAAAATTCCAGCATGCACTGTCTTCAATAAAATGATCATA
* * **
2649006 TCTCAAGCTCCCGATATTGGATTCAGGTGATTCAAAAGGAATTTGAAAGATAACAGATAGATGAA
713 TCTCAAGCTCCCGATATCGGATTCAGGTGATTAAAAAGGAATAGGAAAGATAACAGATAGATGAA
2649071 TAATTCCCAATTGATTTCT-G
778 TAATTCCCAATTG-TTTCTAG
* ** * * * * *
2649091 GAATCAAACATGTCTGTATCTCATCCAGAATCT-AATGAAATTCTGAATAATATTCTTGCATATG
1 GAACCAAACAACTCTGTATCGCATCCAGAATATGAA-GAAATTCTGACTGATATTCTTGCATCTG
* * *
2649155 ATGAAACCGTTCAACGAATGTGTCACACAAGCTATATTTGATGAGCTAGGATCCAACACTATAAC
65 ATGAAACCGTTCAACGAATGTGTCCCACTAGCTATATTTGATGAGCTAGGAACCAACACTATAAC
* *
2649220 AAATGGAAATGATGACTACAAGACTATCTTGAAGCCAATAAAGTTCTACAAGAGAACAAGAATGA
130 AAA-GGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGA
*
2649285 AAGAAACCTCTCAAAGATGTATATATATATTCAAAATGTGTATCTACAAATTATTCAAAAGGTG-
194 AAGAAACCTCTCAAAGATGT-TATATATATTCAAAATGTGTATCTACAAATTATCCAAAAGGTGC
* * *
2649349 CTATTTATAGTTTTTCTAAGTAGCATATGAAAAGAATCAAAAGATGAAAATTTCCCATCAATTTA
258 CTATTTATAGTATTTCTAAGAAGCATATGAAAAGAATCAAAAGATGAAAACTTCCCATCAATTTA
* * * * * *
2649414 GCAATAAAATGCAGTTGAATGC-TTTATATTTCTTATCTTCAATGTTGGCTGAATATTCTAGATT
323 GCAATAAAATGCACTTGAATGCATTGA-ATTTCTTATCTTCAAGGTTGACTAAATATTCTAGATC
* * * *
2649478 ATTTT-GTGGTTGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGA
387 ATTTTGGGGGATGAATCTAGACAATTTAAAGATTAATTTGGCCTTAATTTCGTCCAAGGGGTGGA
*
2649542 AGA-CTTGCTATTCCATGCTGAAAATTGTCCTAATATGTATGTGAATTAAATCACCCTTCATTGC
452 AGACCTTGCTATTCCATGCTGAAAATTGTCCTAATA---A-GTGAACTAAATCA-CC--C-TT-C
* * * *
2649606 ATGCTCCCTTGAAGAATATGAAAAACCCTTGACTTTAGATGATAACAATCAGCTTTGATTGCCTT
508 A-------TTG-AGAATATGAAAAACCCTTGACCTTAGATGATAACAATAAGCTTCGAATGCCTT
* * * *
2649671 GAATGTGTGAATTAAGAGTCCTTCAAGGTCTTGTCATTTGGATGAAGTTTG-AAAGATTCTCCCT
565 GAATGTGTGAATTAAGAGTCCTCCAAGGCCTTGTCACTTGGATGAAG-TTGAAAAGACTCTCCCT
* * * * *
2649735 TGGTTCAAACG-CATCCAACTCATCCATGCAT-AAATGT-CACGTATCAAAATTCCAGCATGTAG
629 TGGTTCAAA-GTCATCCAAATCATCCATGAATAAAAT-TAC-CGTAACAAAATTCCAGCATGCAC
* *
2649797 TGTCTTCAATAAATTGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTAAAAAGGAATA
691 TGTCTTCAATAAAATGATCATATCTCAAGCTCCCGATATCGGATTCAGGTGATTAAAAAGGAATA
* *
2649862 GGAAAGATAAGAGATAGATGAATAATTCCCAATTGTTTTTAG
756 GGAAAGATAACAGATAGATGAATAATTCCCAATTGTTTCTAG
* *
2649904 GAACCAAACAACTCTGTATCGCATCCAGAATATGAAGACATTCTGACTGATATTCTTGCATCCGA
1 GAACCAAACAACTCTGTATCGCATCCAGAATATGAAGAAATTCTGACTGATATTCTTGCATCTGA
* * *
2649969 TGAAACCGTTCAACAAATGT-TACCCACTAGCTATATTTGATGAGATAGGAACAAACACTATAGA
66 TGAAACCGTTCAACGAATGTGT-CCCACTAGCTATATTTGATGAGCTAGGAACCAACACTATA-A
* * *
2650033 GAAAGGAAATGAAGACCACAAGACTATGTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGA
129 CAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGA
*
2650098 AAGAAACCTCTCAAAGTTGTTTTATATATATTCAAAATGTGTATCTACAAATTATC
194 AAGAAACCTCTCAAAGATG--TTATATATATTCAAAATGTGTATCTACAAATTATC
2650154 ATCAATTTAT
Statistics
Matches: 914, Mismatches: 117, Indels: 49
0.85 0.11 0.05
Matches are distributed among these distances:
796 31 0.03
798 65 0.07
799 287 0.31
800 47 0.05
801 2 0.00
803 1 0.00
804 2 0.00
805 2 0.00
812 13 0.01
813 420 0.46
814 43 0.05
815 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (797 bp):
GAACCAAACAACTCTGTATCGCATCCAGAATATGAAGAAATTCTGACTGATATTCTTGCATCTGA
TGAAACCGTTCAACGAATGTGTCCCACTAGCTATATTTGATGAGCTAGGAACCAACACTATAACA
AAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAA
GAAACCTCTCAAAGATGTTATATATATTCAAAATGTGTATCTACAAATTATCCAAAAGGTGCCTA
TTTATAGTATTTCTAAGAAGCATATGAAAAGAATCAAAAGATGAAAACTTCCCATCAATTTAGCA
ATAAAATGCACTTGAATGCATTGAATTTCTTATCTTCAAGGTTGACTAAATATTCTAGATCATTT
TGGGGGATGAATCTAGACAATTTAAAGATTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGAC
CTTGCTATTCCATGCTGAAAATTGTCCTAATAAGTGAACTAAATCACCCTTCATTGAGAATATGA
AAAACCCTTGACCTTAGATGATAACAATAAGCTTCGAATGCCTTGAATGTGTGAATTAAGAGTCC
TCCAAGGCCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAAGTCATCCAAATCA
TCCATGAATAAAATTACCGTAACAAAATTCCAGCATGCACTGTCTTCAATAAAATGATCATATCT
CAAGCTCCCGATATCGGATTCAGGTGATTAAAAAGGAATAGGAAAGATAACAGATAGATGAATAA
TTCCCAATTGTTTCTAG
Found at i:2657540 original size:812 final size:804
Alignment explanation
Indices: 2655569--2659925 Score: 6071
Period size: 801 Copynumber: 5.4 Consensus size: 804
2655559 GCCCGTGACA
* * * * *
2655569 AAGAGAACAAGAATGAAAGCAACCTCTCAATGAT-ATTTTATATATTCAAAATGTGTATAGACAT
1 AAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTTATATATTCAAAATGTGTATATACAA
*
2655633 ATGATCCCAAAGGTGTCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAACATGAAA
66 ATGATCCCAAAGGTG-CTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAA
* *
2655698 AATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATTTTTAAGGTTGAC
130 AATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGC
* * *
2655763 TGAATATTTTAGATCATTTTGGGGATGAATCTAGAGAATTTAAAGCTTAATTTGGCCTTAATTTC
195 TGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTC
* *
2655828 GTCCAAGGGGTGGAATACTCTTGCTATTCCATGCTAAAAATTGTCTTAATAAGTGAATTAAATCA
260 GTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCA
* *
2655893 CCCTTCATTGCATGCTCCCATGAAGAATATGAACAACCATTGACATTAGATTATAACAATCATCT
325 CCCTTCATTGCATGCTCCCATGAAGAATATGAACAACC-TTGACTTTAGATGATAACAATCATCT
*
2655958 TTGAATACCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGCTGAAGTTGAAAA
389 TTGAATACCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAA
* * *
2656023 GACTCTCCATTGGTTC-AA-A-CGCATCCATGCATAAAATTTCCGTAACAAAATTCCA-CCTGCA
454 GACTCTCCCTTGGTTCAAACATCTCATCCATGCATAAAATTTCCGTAACAAAATTCCAGCATGCA
* *
2656084 CTATCTTCAATAAATCGATCATATCTTAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAAT
519 CTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCAT
2656149 TGAAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTATGTATCGA
584 TGAAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTATGTATC-A
* * * * * *
2656214 -ATCCAGATTTTGAAGACATTCCGATTGATATTCTTGTATGTGATGAAATCGTTCAACGAACGTG
648 CATCCAGAATTTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTG
* * * *
2656278 ACCCACTAGCTATATATGATAAGCAAGGAACCAATCA-TGTAACAAAAGAAAATGAAGACTACAG
713 ACCCACTAGCTATATATGATGAGCTAGGAACCAA-CACTATAACAAAAGAAAATGAAGACTACAA
*
2656342 GACTATCTTAAAGCCGATAAGGTTCTAC
777 GACTATCTTGAAGCCGATAAGGTTCTAC
* * * *
2656370 AAGAGAACAAGAATGAAAGCAACCTCCCAATGAT-ATTTTATATATTCAAAATGTGTATATA-AA
1 AAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTTATATATTCAAAATGTGTATATACAA
*
2656433 CATGATCCCAAAGGTGTCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCGAAAGATGAA
66 -ATGATCCCAAAGGTG-CTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAA
* * *
2656498 TATTTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTAT-TATTAAGGTTC
129 AAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCT-TTAAGGTTG
* * * *
2656562 ACTGAATATTCTAGATCATTTTGGGGATGAATCTAGAAAATTTAAAGCTAAATTTGGCCTTAATT
193 GCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATT
* *
2656627 TCGTCCAAGGGGTGGAAGACTCTTGCTATTTCATGCT-AAAAGTTTTCTTAATAAGTGAATTAAA
258 TCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAA-TTGTCTTAATAAGTGAATTAAA
* *
2656691 TCACCCTTCATTTCATGCTCCCCTGAAGAATATGAACAATCCTTGACTTTAGATGATAACAATCA
322 TCACCCTTCATTGCATGCTCCCATGAAGAATATGAACAA-CCTTGACTTTAGATGATAACAATCA
* * * * * *
2656756 TCTTTGAATGCCTTGATTGTGTGAATTAAGAGTTCTTCAATGGGTTGTCACATGGATGAAGTTGA
386 TCTTTGAATACCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGA
* * *
2656821 GAAGACTCTTCCTTGGTTCAAACTCATCAAAATCATCCATGCATAAAATTACCGTAACAAAATTC
451 AAAGACTCTCCCTTGGTTCAAA--CATC----TCATCCATGCATAAAATTTCCGTAACAAAATTC
** * ** * *
2656886 CAGCATGCACCGTCTTCAATAAATTGATCATATAGCAAGCTCCCAATATTGGATTGAGGTGATTC
510 CAGCATGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTC
* * * *
2656951 AAAAGGCATTTG-AAAGATAACAGATAGATGAATAATTTCCAAATGATTTCTGGAACCAAACATG
575 AAAAGGCA-TTGAAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATG
* * *
2657015 TATGTATCACATCCAGAATCTAAAGACATTCTGACTGATATTCTTGCATATGATGAAACCGTTCA
639 TATGTATCACATCCAGAATTTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCA
* * * * * * * *
2657080 ACGAATGTAACCCATTAGCTATATTTGATGAGCTAGGATCCAACACTATAACAAATGGAAATGAT
704 ACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGAAAATGAA
* **
2657145 GACTACAAGACTATCTTGAAGCCAATAAATTTCTAC
769 GACTACAAGACTATCTTGAAGCCGATAAGGTTCTAC
* *
2657181 AAGAGAACAAGAATTAAAGAAACCTCTCAAAGATGTTTTATATATATTCAAAATGTGTATCTACA
1 AAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTT-TATATATTCAAAATGTGTATATACA
2657246 AATGATCCCAAAGGTGCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAA
65 AATGATCCCAAAGGTGCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAA
* * * *
2657311 AATT-TCCATCAATTTACCAATAAAATGCACTTGAATGCTTTATCTTTCTTATCTTCAACGTTGG
130 AATTCT-CATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGG
*
2657375 CGGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTT
194 CTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTT
** * * *
2657440 CGTCCAAGTAGTGTAAGAGTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAATGAATTAAATC
259 CGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATC
* * * * * *
2657505 ACCCTTCATTGCATGCTCCCTTGAGGAATATGAACAACCCTTAACTTTAAATGACAACAATCAGC
324 ACCCTTCATTGCATGCTCCCATGAAGAATATGAACAA-CCTTGACTTTAGATGATAACAATCATC
* * *
2657570 TTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGTCTTTTCACTTGGCTGAAGTTGAAA
388 TTTGAATACCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAA
* *
2657635 AGACTCTCCCTTGGTTCAAAC-T-T-ATCCATGCATAAAATTTCCGT-ACCAAATTCCAGCGTGC
453 AGACTCTCCCTTGGTTCAAACATCTCATCCATGCATAAAATTTCCGTAACAAAATTCCAGCATGC
* *
2657696 ACTATCTTTAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCCAAAGGCA
518 ACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCA
* *
2657761 TTGAAAAGATAATAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATCA
583 TTGAAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTATGTATCA
* * * * * *
2657826 TATCCAGAATTTAAAAACATTCTGACCGATATTCATGCATCTGATGAAACCGTTCAATGAACGTG
648 CATCCAGAATTTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTG
* *
2657891 ACCAACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGAAAATGAAGACTACAAG
713 ACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTACAAG
*
2657956 ACTATCTTGAAGCTGATAAGGTTCTAC
778 ACTATCTTGAAGCCGATAAGGTTCTAC
* * * * * * * *
2657983 AAGAGAATAAGAACT-AATGAAACTTCTCTAAGATG-TTTTATAAATTAAAAATGAGTATATGCA
1 AAGAGAACAAGAA-TGAAAGAAACCTCTCAAAGATGTTTTTATATATTCAAAATGTGTATATACA
* * * * * *
2658046 TATGATCCAAAAGTTTCCTATTTATATTATTTCAAAGCAGCATATGAAAAGACTCAAAAGAAT-A
65 AATGATCCCAAAG-GTGCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAG-ATGA
* ** * *
2658110 AAAATTCTCATCCATTTAGCAATAAAAAACACTTGAATGCTTTGCCTTTCTTATCTTTTAGGTTG
128 AAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTG
* * *
2658175 GCTGAATATTCTAGATCATTTTGAGGATAAATCCT-GACAATTTGAAGCTTAATTTGGCCTTAAA
193 GCTGAATATTCTAGATCATTTTGGGGATGAAT-CTAGACAATTTGAAGCTTAATTTGGCCTTAAT
*
2658239 TTCGTCGAAGGGGTGGAAGA--CTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAA
257 TTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAA
* * *
2658302 TCACCCTTCATTGCATGTTCCCTTGAAGAATATGAAAAACCCTTGACTTTAGATGATAACAATCA
322 TCACCCTTCATTGCATGCTCCCATGAAGAATATGAACAA-CCTTGACTTTAGATGATAACAATCA
* * * *
2658367 GCTTTGAACACCTTGAATGTGTGAATTAAGAGTCATTCAATGGCTTGTCACTTGGATGAAGTTTG
386 TCTTTGAATACCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAG-TTG
* *
2658432 -AAAGACTCTCCCTAGGTTCAAACTCATCCAAATCATCCATGCAT-AAATCTCACGTAAC-AAAT
450 AAAAGACTCTCCCTTGGTTCAAA--CAT-C---TCATCCATGCATAAAATTTC-CGTAACAAAAT
* * * * *
2658494 TCCAGCCTGTACTGTCTTCAATAAATTGATCATATCTCAAGCTCCTGATATCGGATTGAGGTGAT
508 TCCAGCATGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGAT
* * * ** *
2658559 TCAAAAGGAATTGGAAAGATAAGAGATAAATGAATAATTCATAATTGATTTCTGGAACCAAACAT
573 TCAAAAGGCATTGAAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACAT
* *
2658624 GTTTGTATCACATCCAGAATCTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTC
638 GTATGTATCACATCCAGAATTTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTC
* * *
2658689 AACGAACGTGACCCACTAGCTATATTTGATGAGCTAGGAACAAACACTATAGA-GAAAGAAAATG
703 AACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACACTATA-ACAAAAGAAAATG
* *
2658753 AAGACCACAAGACTATCTTGAAGCCGATAAAGTTCTAC
767 AAGACTACAAGACTATCTTGAAGCCGATAAGGTTCTAC
* * * *
2658791 AAGAGAACAAGAATGAAAGAAACCTCTCAAAAATGTTTTATATATATTCAAAATGGGTGTCTACA
1 AAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTT-TATATATTCAAAATGTGTATATACA
* * *
2658856 AATTATCCCAAAGGTGCTATTTATAGTATTTATAAGAAGCATATGAAAAGACTCAAAAGATGAAA
65 AATGATCCCAAAGGTGCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAA
* *
2658921 AATTCTCATCAATTTATCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGC
130 AATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGC
* * *
2658986 TGATTATTCTAGATCGTTTTGGGGATGAATCTAGACAATTT-AATGCTTAATTTGGCATTAATTT
195 TGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAA-GCTTAATTTGGCCTTAATTT
* * * * *
2659050 CATCCTAGGGGTGGAAGACAC-T-CTATTCCATGTTGAAAATTGTCTTAATAAATGAATTAAATC
259 CGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATC
* * *
2659113 ACCCCTCATTGCATGCTCCGATGAAGAATATGAACAACCATTGACATTAGATGATAACAATCATC
324 ACCCTTCATTGCATGCTCCCATGAAGAATATGAACAACC-TTGACTTTAGATGATAACAATCATC
* * * **
2659178 TTTTAATACCTTGAATGTGTGAATTAAGAGTCCTTCATTGGTTTCACACTTGGCTGAAGTTGAAA
388 TTTGAATACCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAA
*
2659243 AGACTCTCCCTTGGTTC-AA-A-CTCATCCATGCATAAAATTTTCGTAACAAAATTCCAGCATGC
453 AGACTCTCCCTTGGTTCAAACATCTCATCCATGCATAAAATTTCCGTAACAAAATTCCAGCATGC
* *
2659305 ACTATCTTTAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCA
518 ACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCA
* * * *
2659370 ATGAAAAGATAAGAGATAG-TGAATAATTCCCAATTGATTTCTTGACCCAAACATGTCTGTATCG
583 TTGAAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTATGTATCA
* *
2659434 CATCCAGATTTTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACAAACGTG
648 CATCCAGAATTTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTG
* ** *
2659499 ACGCACTAGCTATATATGACAAGCAAGGAA-CAAC-CGATATAACAAAAGAAAATGAAGACTACA
713 ACCCACTAGCTATATATGATGAGCTAGGAACCAACAC--TATAACAAAAGAAAATGAAGACTACA
* *
2659562 AGAATATCTTGAAGTCGATAAGGTTCTAC
776 AGACTATCTTGAAGCCGATAAGGTTCTAC
* * * *
2659591 AAGAGAACAAGAATGAATGCAACCTCTCAAATATG-TTTTATATATTCAAAATGTGTATATACAT
1 AAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTTATATATTCAAAATGTGTATATACAA
* * * *
2659655 ATGATCCCAAAGGTTCCTATTTATATTATTTCAAAGTAGCATATGAAAAGACTCAAAAGAAT-AA
66 ATGATCCCAAAGG-TGCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAG-ATGAA
* *
2659719 AAATTCTAATCAATTTAGCAATAAAAATG--CTTGAATGCTTTGCCTTTCTTATCTTTAAGGTTG
129 AAATTCTCATCAATTTAGCAAT-AAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTG
* *
2659782 GCTGAATATTCTAGATCATTATGGGGATGAATCTAAACAATTTGAAGCTTAATTTGGCCTTAATT
193 GCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATT
2659847 TCGTCCAAGGGGTGGAAGA--CTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAAT
258 TCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAAT
2659910 CACCCTTCATTGCATG
323 CACCCTTCATTGCATG
2659926 GTCACGCCCC
Statistics
Matches: 3153, Mismatches: 340, Indels: 129
0.87 0.09 0.04
Matches are distributed among these distances:
796 1 0.00
797 1 0.00
798 194 0.06
799 248 0.08
800 272 0.09
801 699 0.22
802 302 0.10
803 22 0.01
804 1 0.00
805 2 0.00
806 1 0.00
807 8 0.00
808 323 0.10
809 338 0.11
810 67 0.02
811 277 0.09
812 353 0.11
813 42 0.01
814 2 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (804 bp):
AAGAGAACAAGAATGAAAGAAACCTCTCAAAGATGTTTTTATATATTCAAAATGTGTATATACAA
ATGATCCCAAAGGTGCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAA
ATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTTAAGGTTGGCT
GAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCG
TCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCAC
CCTTCATTGCATGCTCCCATGAAGAATATGAACAACCTTGACTTTAGATGATAACAATCATCTTT
GAATACCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGCTGAAGTTGAAAAGA
CTCTCCCTTGGTTCAAACATCTCATCCATGCATAAAATTTCCGTAACAAAATTCCAGCATGCACT
ATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTG
AAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTCTTGAACCAAACATGTATGTATCACAT
CCAGAATTTGAAGACATTCTGACTGATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACC
CACTAGCTATATATGATGAGCTAGGAACCAACACTATAACAAAAGAAAATGAAGACTACAAGACT
ATCTTGAAGCCGATAAGGTTCTAC
Found at i:2666359 original size:799 final size:798
Alignment explanation
Indices: 2664707--2666814 Score: 2578
Period size: 799 Copynumber: 2.6 Consensus size: 798
2664697 GCCCGTGACA
* * *
2664707 GCATGCTCCCTTGAAGAATATAAAAAACCCTTGACTTTTGATGATAACAATCAACTTTGAATGCC
1 GCATGCTCCCTTGAAGAATATGAAAAATCCTTGACTTTAGATGATAACAATCAACTTTGAATGCC
* *
2664772 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGC-CACTTGGATGATGTTTG-AAAGACTATC
66 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTT-CTCACTTGGATGAAG-TTGAAAAGACTCTC
* * * * *
2664835 CCTTGGTTTAAACTCATCCAAATCATCCATGCATAAATCTCACATAATAAAATTCCAGCCTGTAC
129 CCTTGGTTCAAACTCATCC-AATCAT-CAT--A-AAATTTC-CGTAACAAAATTCCAGCCTGCAC
* ** * * *
2664900 TGTCTTCAATAAATTGATCATATCTCAAGCTCCCGATATTAGATTTAGGTGCTTCAAAAGGAATT
188 TGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATT
* **
2664965 AGAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTTCAGAACCAAACAAATCTGTATCACA
253 AGAAAGATAAGAGATAGATGAATAATTCCCAATTGATTTT-TGAACCAAACATGTCTGTATCACA
* * * *
2665030 TTCAGAATCTGATGATATTCTTACTGATATTCTTGCATCCGATGAAACCATTCAACGAACGTGAC
317 TCCAGAATCTGAT-A-ATTCTGACTGATA-TCTTGCATCTGATGAAACCGTTCAACGAACGTGAC
* * * *
2665095 CCACTAGCTATATTTGATGAGCTAGGAA-CAAACACTATAGA-GAAAGAAAATGAAGACCACGAG
379 CCACTAGCTATATATGATGAGC-AGGAACCAAA-A-TATA-ACAAAAGAAAATGAAGACTACAAG
* * * *
2665158 ACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATG-ATAGAAAACTCTCAAAGATGTT
440 ACTATCCTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAT-GCAACCTCTCAAAGATATT
* * *
2665222 TTATATATAATCAAAATGTGTATCTACAAATGATCCCATAGGTGCTATTTATAGTATTTATAAGT
504 TTATATAT-ATCAAAATGTGTATATACAAATGATCCCAAAGGTGCTATTTATAGTATTTATAAGC
* * *
2665287 AGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTATCAATAAAATGCACTTGAATG
568 AGCATATGAAAAGACTCAAAAGATGAAAAATTATCATAAATTTAGCAATAAAATGCACTTGAATG
* * *
2665352 CTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGGATGAATCTAGAC
633 CTTTGTCTTTCTTATCTTCAAGGTTGACTGAATATTCTAGACCATTTTGGGGGATGAACCTAGAC
* * * * * *
2665417 AATTTAATGCTTAATTTGGCATTAATTTCGTCCTAGGGGTGGAAGACTCTCTATTCCATGCTGAA
698 AATTTAAAGCGTAATTTGGCACTAATTTCGTCCAAGGAGTGGAAGACTCTCTATTCCATGCTCAA
* *
2665482 AATTGTCTTGATAAGTGAATTAAATCACCCTTCATT
763 AATTGTCATAATAAGTGAATTAAATCACCCTTCATT
** * * * * *
2665518 GCATGCTCCGATGAAAAATATGAAAAATCTTTGACATTAGATGATAACAATCATCTTTGAATACC
1 GCATGCTCCCTTGAAGAATATGAAAAATCCTTGACTTTAGATGATAACAATCAACTTTGAATGCC
* * *
2665583 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGCTGACGTTGAAAAGATTCTCCC
66 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACTCTCCC
* *
2665648 TTGGTTCAAACTCATCC-AT-AT-ATAAAATTTCCGTAACAAAATTCCAGCCTGCACTATCTTTA
131 TTGGTTCAAACTCATCCAATCATCATAAAATTTCCGTAACAAAATTCCAGCCTGCACTGTCTTCA
*
2665710 ATAAATCGATCATATCTCAAGCTACCGATATCGGATTGAGGTGATTCAAAAGGCATT-GAAAAGA
196 ATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTAG-AAAGA
* * * * *
2665774 TAAGATATAGATTAATAATTCCCAATTAATTTCTTGATCCAAACATGTCTGTATCGCATCCA-AA
260 TAAGAGATAGATGAATAATTCCCAATTGATTT-TTGAACCAAACATGTCTGTATCACATCCAGAA
* * * *
2665838 TTTTGAATACATTCTGACTGATATACTTGCATCTGATGAAACTGTTCAAGGAATG-GACCCACTA
324 -TCTG-ATA-ATTCTGACTGATAT-CTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTA
* *
2665902 GCTATATATGATAAGCAGGGAACCAAAGATATAACAAAAGAAAATGAAGAATACAAGACTATCCT
385 GCTATATATGATGAGCA-GGAACCAAA-ATATAACAAAAGAAAATGAAGACTACAAGACTATCCT
* * *
2665967 GAAGCCGATAAGGTTCCACAAGAGAACAAGAATGAATGCAACCTCTCAATGATATTTTATATAT-
448 GAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAATGCAACCTCTCAAAGATATTTTATATATA
* *
2666031 TCAAAATGTGTATATACATATGATCCCAAAGGTGACTATTTATAGTATTTCTAAGCAGCATATGA
513 TCAAAATGTGTATATACAAATGATCCCAAAGGTG-CTATTTATAGTATTTATAAGCAGCATATGA
*
2666096 AAAGACTTAAAAGATGAAAAATTATCATAAATTTAGCAATAAAATGCAC-TGAATGCTTTGTCTT
577 AAAGACTCAAAAGATGAAAAATTATCATAAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTT
* * * * *
2666160 TCTTATTTTTAAGGTTGACTTAATATTCTATACCATTTT-GGGGATGAACCTAGAGAATTTAAAG
642 TCTTATCTTCAAGGTTGACTGAATATTCTAGACCATTTTGGGGGATGAACCTAGACAATTTAAAG
* * *
2666224 CGTAATTTGGCCCTAATTTCGTCCAAGGAG-GGAAGTCTCTTGCTATTCCATGCTCAAATTTGTC
707 CGTAATTTGGCACTAATTTCGTCCAAGGAGTGGAAGACTC-T-CTATTCCATGCTCAAAATTGTC
* *
2666288 ATAATAAGTGAATTCAATCACCCTTTATT
770 ATAATAAGTGAATTAAATCACCCTTCATT
* * *
2666317 GCATGCACCCTTGAAGAATATGAACAATCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCC
1 GCATGCTCCCTTGAAGAATATGAAAAATCCTTGACTTTAGATGATAACAATCAACTTTGAATGCC
* * * * * *
2666382 TTAAATGTGTGAATTAAGAGTTCTTCAATGGCTTGTCACGTGGATGAAGTTGAAAAGAGTCTTCC
66 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACTCTCCC
* *
2666447 TGGGTTCAAACGCATCCAAATCATCCGTGCATAAAA-TTCCTGTAACAAAATTCC-GACCTGCAC
131 TTGGTTCAAACTCATCC-AATCA----T-CATAAAATTTCC-GTAACAAAATTCCAG-CCTGCAC
* * *
2666510 TGTCGTCAATAAATCAATCATATCTCAAGCTCCCGATATCGGATTGAGGTAATTCAAAAGGCATT
188 TGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATT
* * ** * * * * *
2666575 AGAATGATGAGAGGCAGATGAATAATTTCCAATTGATATATTGAACGAAACATGTTTTTATCACA
253 AGAAAGATAAGAGATAGATGAATAATTCCCAATTGAT-TTTTGAACCAAACATGTCTGTATCACA
* *
2666640 TCTAGAATCTG--AA----GAC--AT-TCTTTCATCTGATGAAACCGTTCAACGAACGTGACCCA
317 TCCAGAATCTGATAATTCTGACTGATATCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCA
* * *
2666696 CTAGCTATATATGATGAGATAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTA-
382 CTAGCTATATATGATGAG-CAGGAACCAA-AATATAACAAAAGAAAATGAAGACTACAAGACTAT
* * * *
2666760 CCTTTATGCAGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACCTCTCAAAG
445 CC-TGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAATGCAACCTCTCAAAG
2666815 TATAATACCC
Statistics
Matches: 1119, Mismatches: 146, Indels: 78
0.83 0.11 0.06
Matches are distributed among these distances:
796 28 0.03
797 115 0.10
798 52 0.05
799 252 0.23
800 78 0.07
801 117 0.10
802 181 0.16
803 9 0.01
804 2 0.00
805 1 0.00
806 3 0.00
807 5 0.00
808 140 0.13
809 6 0.01
810 4 0.00
811 126 0.11
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (798 bp):
GCATGCTCCCTTGAAGAATATGAAAAATCCTTGACTTTAGATGATAACAATCAACTTTGAATGCC
TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACTCTCCC
TTGGTTCAAACTCATCCAATCATCATAAAATTTCCGTAACAAAATTCCAGCCTGCACTGTCTTCA
ATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTAGAAAGAT
AAGAGATAGATGAATAATTCCCAATTGATTTTTGAACCAAACATGTCTGTATCACATCCAGAATC
TGATAATTCTGACTGATATCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATA
TATGATGAGCAGGAACCAAAATATAACAAAAGAAAATGAAGACTACAAGACTATCCTGAAGCCGA
TAAAGTTCTACAAGAGAACAAGAATGAATGCAACCTCTCAAAGATATTTTATATATATCAAAATG
TGTATATACAAATGATCCCAAAGGTGCTATTTATAGTATTTATAAGCAGCATATGAAAAGACTCA
AAAGATGAAAAATTATCATAAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTT
CAAGGTTGACTGAATATTCTAGACCATTTTGGGGGATGAACCTAGACAATTTAAAGCGTAATTTG
GCACTAATTTCGTCCAAGGAGTGGAAGACTCTCTATTCCATGCTCAAAATTGTCATAATAAGTGA
ATTAAATCACCCTTCATT
Found at i:2668473 original size:24 final size:24
Alignment explanation
Indices: 2668441--2668486 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
2668431 ATGAAATTGT
*
2668441 ACATAGATGTTTTATACATCATGA
1 ACATAGATGTTTTAGACATCATGA
2668465 ACATAGATGTTTTAGACATCAT
1 ACATAGATGTTTTAGACATCAT
2668487 CAGGAAGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (24 bp):
ACATAGATGTTTTAGACATCATGA
Found at i:2669276 original size:23 final size:23
Alignment explanation
Indices: 2669243--2669314 Score: 108
Period size: 23 Copynumber: 3.1 Consensus size: 23
2669233 TTTTATGAAT
* *
2669243 AGTAATAAACAGTACCCTGCTAC
1 AGTAATGAACAATACCCTGCTAC
*
2669266 AGTAATGAACAATACCCTGCTAT
1 AGTAATGAACAATACCCTGCTAC
*
2669289 AGTAATGAACAATACCCTGCAAC
1 AGTAATGAACAATACCCTGCTAC
2669312 AGT
1 AGT
2669315 GTACCGATAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.22
Consensus pattern (23 bp):
AGTAATGAACAATACCCTGCTAC
Found at i:2688982 original size:802 final size:802
Alignment explanation
Indices: 2687429--2700893 Score: 10456
Period size: 802 Copynumber: 16.6 Consensus size: 802
2687419 GGGTGTTACA
* * *
2687429 CAAAGATGTTTTATATATATTCAAAATGTGTATCTACAAATGATCCCAAATGTGCCTTTTTATAG
1 CAAAGATG-TTT-TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAG
* * * * *
2687494 TATTTCTAAGCAGCATAAGAAAAGACTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAAT
64 TATTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAAT
* * * **
2687559 GAAATTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTAAATATTCTAGAAAATTTT-GGGAT
129 GCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGAT
* ** * * * *
2687623 GAATCTAGA-AACTTTGAAGCTTAATTTGGCCAAAATTTCGTCCAAGGGGTGGAAGACTC--CCT
194 GAATCTAGACAA-TTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCT
* * * * * * *
2687685 ATTCCATGCTGAAAATTATCTTGATAAGTAAATTAAATCACCCTACATTGCATGCTACCTTGAAG
258 ATTCCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAG
*
2687750 AATATGAACAACCCTTGACTTTAGATGATAAAAATCATCTTTGAATGCCTTGAATGTGTGAAATA
323 AATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATA
* *
2687815 AG-GTCCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATC
388 AGAGTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATC
2687879 CATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCA
453 CATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCA
* * ** * * *
2687944 AGTTCCCGATATCAGATTGAGGTGATTCAAAAGGCGTTAAAAAGATAAGACATAGATGAATAATT
518 AGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATT
* ** *
2688009 CCCAATTGATTTCTTGAACCAAACATGCCTGTATAGAATCAAGAACTTGAAGACATTCTGACTGA
583 CCCAATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGA
*
2688074 TATTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATTTATGATGAGCTAGGA
648 TATTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGA
*
2688139 ACCAACT-CTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACA
713 ACCAA-TGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACA
*
2688203 AGAGAACAAGAATTCTAGAAACCTCT
777 AGAGAACAAGAATTATAGAAACCTCT
2688229 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
2688294 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
2688359 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
2688424 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
196 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
**
2688489 CCATGCTAAATTTTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
261 CCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
2688554 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
326 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
2688619 GTTCTTCAAT-GCTTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCA
391 GTTCTTCAATGGC-TTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCA
2688683 TGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAG
455 TGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAG
*
2688748 CTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAATAGATATATGAATAATTCC
520 CTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTCC
* *
2688813 CAATTGATTTCTTAAACCAAACATGTATGTATAGAATCCGGAATTTGAAGACATTCTGACTGATA
585 CAATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATA
*
2688878 TTGTTGCATCTGATGAAACAGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAAC
650 TTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAAC
*
2688943 CAATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACATGA
715 CAATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
2689008 GAACAAGAATTATAGAAACCTCT
780 GAACAAGAATTATAGAAACCTCT
*
2689031 CAATGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
*
2689096 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATTAATTTAGCAATAAAATGC
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
*
2689161 ACTTAAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
2689226 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
196 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
2689291 CCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
261 CCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
2689356 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
326 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
* *
2689421 GTTCTTCAATGGCTTATCACTTAGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCAT
391 GTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCAT
*
2689486 GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATAACTCAAGC
456 GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
* ** * * *
2689551 TCTCGATATCGGATTGAGGTGATTCAAAAGGCGTTAAAAAGATAAGACATAGATGAATAATTCCC
521 TCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTCCC
* ** *
2689616 AATTGATTTCTTGAACCAAACATGCCTGTATAGAATCAAGAACTTGAAGACATTCTGACTGATAT
586 AATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATAT
*
2689681 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATTTATGATGAGCTAGGAACC
651 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACC
* *
2689746 AACT-CTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTAAAAGA
716 AA-TGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
*
2689810 GAACAAGAATTCTAGAAACCTCT
780 GAACAAGAATTATAGAAACCTCT
*
2689833 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCAATTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
*
2689898 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGTAATAAAATGC
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
*
2689963 ACTTGAATGCTTTGTTTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
2690028 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
196 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
*
2690093 CCATGCTAAAAGTTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
261 CCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
*
2690158 ATGAACAACCCTTAACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
326 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
* *
2690223 GTTCTTCAATGGTTTCTCACTTGGATGAAGTTGAAAACACACTCCCTTTGTTCAAACTCATCCAT
391 GTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCAT
2690288 GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
456 GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
2690353 TCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTCCC
521 TCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTCCC
* *
2690418 AATTGATTTCTTAAACCAAACATGTATGTATAGAATCCGGAATTTGAAGACATTCTGACTGATAT
586 AATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATAT
2690483 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACC
651 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACC
*
2690548 AATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAATCCGATAAAGTTCTACAAGAG
716 AATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAG
2690613 AACAAGAATTATAGAAACCTCT
781 AACAAGAATTATAGAAACCTCT
2690635 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
2690700 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
2690765 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
2690830 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
196 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
*
2690895 CCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTAATTGCATGCTCCCTTGAAGAAT
261 CCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
*
2690960 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTTAAATAAGA
326 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
* *
2691025 GTTCTTCAATGGCTTCTCACTTAGATGAAGTTGAAAAGACTCTCCCTTTGTTCAAACTCATCCAT
391 GTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCAT
* *
2691090 GCATAAAATTCCCATAACAAAATTCCAGCATGCACTATCTTCAATAAATCGATTATATCTCAAGC
456 GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
2691155 TCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTCCC
521 TCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTCCC
*
2691220 AATTGATTTCTTGAACCAAACATGTCTGTATATAATCCGGAATTTGAAGACATTCTGACTGATAT
586 AATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATAT
*
2691285 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGAAACC
651 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACC
2691350 AATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAG
716 AATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAG
2691415 AACAAGAATTATAGAAACCTCT
781 AACAAGAATTATAGAAACCTCT
2691437 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
* *
2691502 TTTCTAAGTAACATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAGTAAAATGC
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
* *
2691567 ACTTGAATGCTTTGTATTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
* * * * * * *
2691632 ATGTAGACAATTTTAAGCTTAATTTGGCTTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATT
196 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
* * *
2691697 CCATGC-AGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTAATTGCATGCTCCC--------
261 CCATGCTA-AAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAA
* * * *
2691753 T-TG----A--C-T---TTT-GATAATAGCAATCAAT-TTTGAATCCCTTGAATGTGTGAATTAA
325 TATGAACAACCCTTGACTTTAGATGATAACAATC-ATCTTTGAATGCCTTGAATGTGTGAAATAA
* * * * * *
2691805 GA-TTCCTTCAATGGCTTGTCTCATGGATGAAATTGAGAAGACTCTCCCTTT-TCTCCAACTCAT
389 GAGTT-CTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGT-T-CAA---A-
* * * *** * * *
2691868 CCAAATCATCCATGCGTAAAATTCCCGTAACTAAATTGTTGCCTACAATGTCTTCAATAAATCGA
447 -C---TCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGA
* * * * * * * * *
2691933 TCATATCTCTAGCTCCCGATAACGGATTGGGGTGTTTCAAAAGGCATTGGAAAGATGAGAGGTAG
508 TCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATAT
* * * * * * *
2691998 A-GAAATAATTCTCAATTGATTTCTGGAATCAAACATGTCTGTATCGCATCCAGAATTTGATG--
573 ATG-AATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGAC
* * * * * * * * *
2692060 A-GCT-A-GGTATATATGATG-AGCT-A-GGAACCAATTCTATAACAAAGGGAAATGAAGACTAC
637 ATTCTGACTG-ATAT-TGTTGCATCTGATGAAACC-GTTC---AACAAA-CG---TG-A-CCCAC
* * * * * * *
2692119 AAGACTATCT-T--TAAGCT--GATA--AA-GTTCT-ACAAGA-GAACA-AAA-ATTA-AAG-C-
690 TAG-CTATATATGATGAGCTAGGA-ACCAATGCTATAACAAAAGGAA-ATAAAGACTACAAGACT
* * * *** * * *** ** * * ** *
2692169 AGCCTCTCAA--AGAT-GTTTTTTATATATTCAA-AATGTGTATCTACAAATGATCC
752 A-TCT-TGAAGCCGATAAAGTTCTACA-AGAGAACAA-GAAT-TATAGAAA-CCTCT
* * * * *** *
2692222 CAAAGGTGCATTTTTATAGTATT-AATAA-GCAGCATATGA-AAAT-A-CTCAATA--TGAAAAA
1 CAAAGATG---TTTTATA-TATTCAA-AATG-TGTATAT-ACAAATGATCCCAA-AGGTGCCTAT
* * * ** * * ***** *
2692280 TTCTA--A--TC-AATTTAGCA-AT-AAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGG
58 TTATAGTATTTCTAA-GTAACATATGAAAA-G-ACTCAAAAG--AT-TAAAAATTATCATCAA--
* * * * * * * ** * *
2692338 TTGGTTG-AATATTCTAGAT-CATTTTGGGGATGAATCTATACAATTT-GAAGCTT-AA-TTTGG
115 TT--TAGCAATA----AAATGCA-CTT--GAATG-CTTTGT-C--TTTCTTATCTTCAAGGTTGG
* * *** * * ** * * * * **
2692398 CCTTAAT-TTC--GACCA-AGGGGTGGAAGACTCT-TTCTA-TTCAATGCTGAATATAGATTTAA
167 -CTGAATATTCTAGATCATTTTGG-GGATGAATCTAGACAATTTGAA-GCTGAATTTGGCCTT--
* * * * * *
2692457 AATGTGTATATACAAATGATCCCAA-AGGT-G-CCTCTTTATAG-TATTTCTAAGAAGCATATGA
227 AA---G--T-T-C----GA--CCAAGGGGTGGAACACTCT-T-GCTA-TTC---CATGC-TA--A
** * * * ** *** *
2692518 AAA--GGCTCAA-AAGATGAA--AAATT-CTCATCAATTTAGCAATAAAATGAAGTTGAATG-CT
270 AAATTTTCTTAATAAG-TGAATTAAATTACCCTTC-A-TT-GC-AT--GCT-CCCTTGAA-GAAT
* * *** * * * ** * * * *
2692576 TTG-TC-TTTCTT-ATCTTCA-AGGTTGGCTGAAT-AT-TCTAGATAAT--TTTGGGATGAATCT
326 ATGAACAACCCTTGA-CTTTAGATGATAAC--AATCATCT-TTG--AATGCCTT-GAATG--TGT
** * * * * * * * * **
2692633 AGAAACTTTGAAG--CTT-AATTTGGCCT-TAATTTCG-TCCAAGGGGTG-GAAGACTCTCTATT
382 -GAAA-TAAG-AGTTCTTCAA--TGGCTTCTCACTTGGAT-GAA--GTTGAAAAGACACTCCCTT
* * ** * ** * * * * *
2692692 CCATGATGAAA-TTGT-CTTG-ATAACTGAATT-AAATCACCCTACATT---GCATG--CTACCT
439 ---TGTTCAAACTCATCCATGCATAA---AATTCCCAT-A-ACAAAATTCCAGCCTGCACTATCT
* * * * ** *** *** * * * ** *
2692748 TGAAGAATAT-GAACA-A-CCCTTGACTTTAGATGATAACAATCA--T-CTTTGAATGCCTTGAA
496 TCAATAA-ATCGATCATATCTCAAG-CTCCCGAT-ATCGGATTGAGGTGATTCAAAAG----GAA
*** ** * ** * * ** *
2692807 TGTCTGAA-ATAAGAG-TCCATCAATGGCTTCTCACTTGGATGAAGC-TGAA--AAGACACTCTC
554 T-TGAAAAGATAAGAGATATATGAAT-AATTCCCAATT-GAT--TTCTTGAACCAA-ACA-TGTC
* * * ** * * *** * *
2692867 TTGGT-TCAAACTCATCCATGCA--T-AA-A-ATTCCCA-TAACAAAATTCCAGCCTGCACT---
612 -T-GTAT-AGA---ATCC-GGAATTTGAAGACATTCTGACTGATATTGTTGCA-TCTG-A-TGAA
* * * * ** * * * * *
2692922 ATC-TTCAATAAATCGATCATATCTCAAGCTCCCGATATCA-GATTGAGGT--GATTCAAAAGGC
667 ACCGTTCAACAAA-CG-T--GA-C-CCA-CTAGCTATAT-ATGA-TGAGCTAGGA-AC-CAATGC
* * * * *
2692983 -ATTGAAAAGATAAGAGACAGATGAATA-ATTTCCAAATGA-TTTCTT-AAACC-A-AACATGTT
721 TA-T-AACA-A-AAG-GA-A-AT-AA-AGA-CTAC-AA-GACTATCTTGAAGCCGATAA-A-G-T
* * * * *
2693042 TGTA-TAGA-ATCAAGAACT-T-GAAGACATTCT
771 TCTACAAGAGAACAAGAATTATAGAA-AC-CTCT
* ** * * * ** * * * *
2693072 GACTGATATTGTTGCATCTGA-TGAAACCGT-T-CA-ACAAACGTGA-CCCACTAGCT--ATATA
1 CAAAGATGTT-TT--ATAT-ATTCAAAATGTGTATATACAAA--TGATCCCA-AAGGTGCCTAT-
* *** * * * * * * ** *
2693130 TGATGAGCTAGGAACCAACTCTATAACAAAAGGAAATGAAGACT-ACAAGACT--ATCTTGAAGC
58 TTAT-AG-TA-TTTCTAA----GTAAC-ATATG-AA--AAGACTCAAAAGATTAAAAATT--A-T
* * * * * ** * * *
2693192 CGATAAAGTTCTA-CAAGAGAACAAGAATTATAGAAACCTCTCAAAGATGTTT-TATATATTCAA
109 C-ATCAA-TT-TAGCAATA-AA-ATGCACT-T-GAATGCT-T---TG-TCTTTCT-TATCTTC--
** * * * * * * * *
2693255 AATGTGTATATAC-AAATGATCCCAAAGGTGTC-TATTTGTAGTATTTCTAAGTAACATATGAAA
159 AA-G-GT-T-GGCTGAAT-AT-TC-TA-G-ATCAT-TTTG-GGGA--T-GAA-T--C-TA-G-AC
*** * * ** * * * * ** *** * ** *
2693318 AGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAAATTGAATGCTTTGTCTTTC
204 A-A-TTTGAAGCTG--AATTTGGCCTTAAGTT--CGA-CCAA-GGGGTGGAA--C--ACTCTTGC
* * * * **
2693383 TTATCTTCAAGGTTGGCTGAATATTCTAGATCATT-TTGGGAA-TGAATCTAGACAATTTTAAGC
257 -TA--TTCCA---T-GCTAAAAATT-T---TC-TTAAT---AAGTGAAT-T--A-AA--TTACCC
* * ** * * ** * * * * ** * *
2693446 TTAATTTGGCTTTAATTTCGTCCAAGGGAT-GGAA-GACTCTTG-CTATTCCATGCTGAA-AATT
301 TTCA-TT-GC-AT-GCTCCCTTGAA-GAATATGAACAACCCTTGACT-TTAGATGAT-AACAATC
* *** * *** **
2693507 GTC-TT-AAT-AAGTGAA--T-T-AAATCACCCTTCATTGC-AT-GC-TC-C-CTT-GACTTTAG
359 ATCTTTGAATGCCTTGAATGTGTGAAATAAGAGTTC-TT-CAATGGCTTCTCACTTGGA-TGAAG
* * * * * ** * *** **
2693559 ATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTA-AGAGTCC-TTCA-ATGGCTTGTC
421 -TT-GAA-AA-GA-C----ACTCCCTT---TGT-TCAA--ACTCA-TCCATGCATA-AAATTCCC
* ** ** * * * * *
2693621 ACTGGGATGAAATTGAGAAGACTCT-CCCT-TGGTTCAACCT-CATCCAAATCATCCATGCACAA
469 A-T--AACAAAATT--CCAG-C-CTGCACTAT-CTTCAA--TAAAT-C-GATCAT--AT-CTC-A
** *** ** * * ** ** * ***
2693683 AATTCCCG-TAATAAAATT--CCTGCCTGC--ATTGTCTT---CAG-TAA-ATCGATCATATCTC
518 AGCTCCCGAT-ATCGGATTGAGGTG-ATTCAAAAGGAATTGAAAAGATAAGA--GAT-ATATGAA
** * *** ** * * * ** ** *
2693738 TAGGTCCCGATATCGGATTGGGGTGATTCAAA-A-GGCATTGGAAAG-ATAAGAGATAGATGAAT
578 TAATTCCC-A-AT-TGATT-TCTTGAACCAAACATGTC--TGTATAGAATCCG-GA-ATTTGAAG
** * *** * * * **
2693800 A-ATTCCCAATTGA-ATTCCAGAACCAAACAGGTCTATATCGAATCCAGAATATGAAGACATTC-
635 ACATT-CTGACTGATATT---G----TTGCA--TCT-GAT-GAAACC-G--T-T-CA-ACAAACG
** * * * * *
2693862 TGACTGA-TATTCT-TGCATCTGATGAAACCGTTCAAAGAATGTGACCCACTAGCTATATTTGAC
682 TGACCCACTA-GCTAT--ATATGATG--A--G--C----TA-G-GAACCAAT-GCTATA----AC
* * * * **** * ** *
2693925 GAGATAGGAAA-CAACACTA-TA-AC-AAAAGGAAATGACGAGTACAAGACTATCTTGAAGCCG-
727 -A-AAAGGAAATAAAGACTACAAGACTATCTTG-AA-GCCGA-TA-AAG--T-TCTACAAG-AGA
* * * ***
2693985 ATAATG-TTCTATAG-GA--GAA
782 ACAA-GAAT-TATAGAAACCTCT
**** ** * * ** * * * * * *
2694004 C-AAGAATGAAAGCA-ACCTCTCAAAGT-TGT-TTTTTATAT-ATTCAAAATGTG--TATCTACA
1 CAAAG-ATG-TTTTATATAT-TCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTA-T
* ** * * * ** * * * * *
2694062 AATGATCCCAAAGGT-GCATTTTTATAGTATTTCTAAGCAGCATATGAAAA-TA-C-TCAATATG
62 AGT-ATTTCTAA-GTAACATATGAAAAG-A-CTC-AA-AAG-AT-TAAAAATTATCATCAAT-TT
** * ** *
2694123 AAAAATTCTAATCAATTTAGCAATAAAATGCAATTGAATGCTTTGTCTT-TCTTATCTTCAAGGT
118 AGCAA---TAA--AA--T-GCACTTGAATGC-TTTG--T-C-TT-TCTTATC-T----TCAAGGT
* * * *
2694187 TGGTTGAATATTGTAGATCATTTTGGGGATGAATTTAGACAATTTGAAGCTTAATTTGGCCTTAA
164 TGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTGAATTTGGCCTTAA
* * * * * *
2694252 TTTCGTCCAAGGGGTGAAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAA
229 GTTCGACCAAGGGGTGGAACACTCTTGCTATTCCATGCTAAAAATTTTCTTAATAAGTGAATTAA
* * *
2694317 ATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACACTTGACTTTAGATTATAACAATC
294 ATTACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATC
* * * * * * *
2694382 AGCTTTGAATGCCTCGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCAATTGGATGAAATTG
359 ATCTTTGAATGCCTTGAATGTGTGAAATAAGAGTTCTTCAATGGCTTCTCACTTGGATGAAGTTG
* * * * * *
2694447 AGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCGTAAAAGTCCCGTAACAAAATT
424 AAAAGACACTCCCTTTGTTC-AA---A--C---TCATCCATGCATAAAATTCCCATAACAAAATT
* * *
2694512 CCTGCCTCCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATAACGGATTG-GGATGAT
480 CCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGG-TGAT
* * * * * *
2694576 TCAAAAGGCATTGGAAAGATGAGAGATAGA-GAAATAATTCTCAATTGATTTCTGGAACCAAACA
544 TCAAAAGGAATTGAAAAGATAAGAGATATATG-AATAATTCCCAATTGATTTCTTGAACCAAACA
* * * * * * * * ** *
2694640 TGTCTGTATCGCATCCAGAGTGTGAAGACATTATGACTAATATTCTTTAATCTAATGAAACCGTT
608 TGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATATTGTTGCATCTGATGAAACCGTT
* * * ** * *
2694705 CAACGAACGTGACCCACTAGGTATATATGATCG-GCAATAAACTAATTCTATAACAAAAGGAAAT
673 CAACAAACGTGACCCACTAGCTATATATGAT-GAGCTAGGAACCAATGCTATAACAAAAGGAAAT
* ** * * *
2694769 GAAGACTACAAGACTATCTTGAAGATGATAAAGTTCTACAAGAGAACAAGAA-TAAAAACAAACT
737 AAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGAATTATAGA-AACCT
2694833 CT
801 CT
* *
2694835 CAAAGATGTTTTATTTATTCAAAATGTGTATATACAAATGATCCCAAAAGTGCC-ACTTTATAGT
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTA-TTTATAGT
* * * * * *
2694899 ATTTCTAAG-AAGCATATGAAAAGGCTCAAAAGATGAAAAATTCTCATCACTTTTGAAATAAAAT
65 ATTTCTAAGTAA-CATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAAT
* * *
2694963 GCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTAGATGAATATTCTAGATTATTTTGGGGAT
129 GCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGAT
* * * * *
2695028 GAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTTGACCAAGGGGCGGAAGACTCTTGCTA
194 GAATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTA
* * * * *
2695093 TTCCATGCTGAAAATTGTCTTACTAAGTGAATTAAATCACCCTTCATTGCATTCTCCCTTGAAGA
259 TTCCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGA
* **
2695158 ATATGAACAACCCTTGACTTTAGATGATAACAATAATCTTTGAA-GTCCTTGAATGTGTGATTTA
324 ATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATG-CCTTGAATGTGTGAAATA
* * * * *
2695222 AGAG-TCATTCAATGGCTTGTTACTTGGCTGAAGTTGAAAA-ACTCTCCCTTGGTTCAAACTCAT
388 AGAGTTC-TTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTC-AA---A-
* *
2695285 CCAAATCATCCATGCATAAAATT-CCATAACAAAATTCCAACCTGCACTGTCTT-ATATAAATCG
447 -C---TCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCA-ATAAATCG
* * * * *
2695348 ATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTAAAAAGGCATTGGAAAGAAAAGAGATA
507 ATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATA
* * * ** *
2695413 GATGAATAATTCCCAAATGATTTC-TGAAACCAAACATGTATGTAT-GACATCTAGAATATGAAG
572 TATGAATAATTCCCAATTGATTTCTTG-AACCAAACATGTCTGTATAGA-ATCCGGAATTTGAAG
* * * *
2695476 ACATTCTGACTGATATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGCTAGCTATAT
635 ACATTCTGACTGATATTGTTGCATCTGA-TGAAACCGTTCAACAAACGTGACCCACTAGCTATAT
* ** * * *
2695541 ACGATGAGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTACCTCGAAGCCG
699 ATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCG
* * * * * *
2695606 ATAAGGTTGTACAAAAGAACAAGAATGAAAGCAACCTCT
764 ATAAAGTTCTACAAGAGAACAAGAATTATAGAAACCTCT
* * ** *
2695645 CAAAGATGTTTTATATATTCAAAATGTGTATATACAGATGATCCCAATGGCACCTCTTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
* * * * **
2695710 TTTCTAAGCAACATATGAAAGGACTAAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAATGC
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
* * * * *
2695775 AATTGTATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAACGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
* * * * * *
2695840 ATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGAGGAAGA--CTAGCTATT
196 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
* * * * * *
2695903 CTAAGC-GAAAATTGTCTTAATAAGTGAATTAAATCACTCTTCATTGCATGCTCCCTTGAAGAAT
261 CCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
* * *
2695967 ATGAACAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGA
326 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
* * * * * * *
2696032 GTCCTTCTATGGCTTTTAACTTGGCTGAATTTGAAAAGACACTCCC-TTG-TCAAACTCATCAAT
391 GTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCAT
* * *
2696095 GCCTAAAATTCCCGTAACAAAATTCCATCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
456 GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
* * * * *
2696160 TCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGACAGATGAATAATTTCC
521 TCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTCCC
** * *
2696225 AATTGATTTCTTGAACCAAACATGTCTGTATAGAATCAAGAAGTTGAAGAAATTCTGACTGATAT
586 AATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATAT
* * *
2696290 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAACTATATATGAAGAGCTTGGAACC
651 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACC
* *
2696355 AACT-CTATAACAAAAGGAAATGAAGACTACAAGACTATCTTCAAGCCGATAAAGTTCTACAAGA
716 AA-TGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
2696419 GAACAAGAATTATAGAAACCTCT
780 GAACAAGAATTATAGAAACCTCT
2696442 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
* *
2696507 TTTCTAAGTAACATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGA
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
** * *
2696572 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTATGAATAA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
* * * * *
2696637 ATCTAGACAATTTTAAGCTTAATTTGGCTTTAA-TTCCGTCCAAGGGGTGGAAGACTCTTGCTAT
196 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTT-CGACCAAGGGGTGGAACACTCTTGCTAT
* * *
2696701 TCCATGCTGAAAATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATG----C--------
260 TCCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAA
* * * *
2696754 --T------CCCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGACTGTGTGAATTAAG
325 TATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAG
* * * * * * *
2696811 AGTCCTTCAATGGCTTGTCACTGGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCA
390 AGTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTC-AA---A--C-
* * * * * *
2696876 AATCATCCATGCACAAAATTCCCGTAACAAAATTCCTGTCTGCACTGTCTTCAGTAAATCGATCA
448 --TCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCA
* * * * *
2696941 TATCTCAAGCTCCCGATATCGGATTGGGGTAATTCAAAAGGCATTGGAAAGATAAGAGATAGATG
511 TATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATG
* * * * * * * *
2697006 AATAATTCCCAATTGAGTTCCTGATCCAAACATGTCTATATCGAATCCAGAATATGAAGACATAC
576 AATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTC
* * * *
2697071 TGACTGATATTCTTGCATATGATGAAACCGTTCAA-AGAACGTGACCCACTAGCTATATTTGACG
641 TGACTGATATTGTTGCATCTGATGAAACCGTTCAACA-AACGTGACCCACTAGCTATATATGATG
* ** * * * *
2697135 AGATAGGAGA-CAACACTATAACAAAAGGAAATGACGAGTACAAGACTATCTTGAAGCCGATAAT
705 AGCTAGGA-ACCAATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAA
* * * * *
2697199 GTTCTATAGGAGAACAAGAATGAAAGTAACCTCT
769 GTTCTACAAGAGAACAAGAATTATAGAAACCTCT
* * *
2697233 CAAAGATGTTTTTTATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCATTTTTATAG
1 CAAAGATG--TTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAG
* * * * * * * * * *
2697298 TATTTCTAAGCAGCATATGAAAATACTC--AATATGAAAATTTTTAATCAATTTAGGAATGAAAT
64 TATTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAAT
* *
2697361 GCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTGTAGATCATTTTGGGGAT
129 GCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGAT
* * *
2697426 GAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTA
194 GAATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTA
* * *
2697491 TTCCATGCTGAAAATTTTCTTAATAAGTGAATTAAATTAACCTTCATTGCATCCTCCCTTGAAGA
259 TTCCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGA
*
2697556 ATATGAACAACCCTTGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAA
324 ATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAA
* * *
2697621 GAGTCCTTCAATGGGTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATCC
389 GAGTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCC
* * *
2697686 ATTCATAAAATTCCCATAAAAAAATTCCAGCCTCCACTATCTTCAATAAATCGATCATATCTCAA
454 ATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAA
* * * * * *
2697751 GCTCCCGATATCGGATTGAGGTGATTCTAAAGGCATTGGAAAGATAAGAGATAGATAAATAATTA
519 GCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTC
* * * * *** **
2697816 CCAATTGATTT-ATGAAACCAAAGATATCTGTATCA-CATTTAGAATCGGAAGACATTCTGACTG
584 CCAATTGATTTCTTG-AACCAAACATGTCTGTAT-AGAATCCGGAATTTGAAGACATTCTGACTG
* * * * * *
2697879 ATATTCTTGTATATGATGAAACCGTTCAACGAACGTGACCCGCTAGCTATATATGATGAGCTAGT
647 ATATTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGG
**
2697944 AACCAACACTATAACAAAAGGAAA-AGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTAC
712 AACCAATGCTATAACAAAAGGAAATA-AAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTAC
* * *
2698008 AATAGAACAAGAATTAAAGCAACCTCT
776 AAGAGAACAAGAATTATAGAAACCTCT
* * * *
2698035 CAAGGATGTTTTATATATTCAAAATGTGTATCTACAAATGATCCAAAAGATGCCTATTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
* * * * **
2698100 TTTCTATGCAACATATGAAAAGACTCAAAAGATGAAACATTCCCATCAATTTAGCAATAAAATGC
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
* * *** *
2698165 ACTTGAATGATTTGTCTTTCTTATCTTCAACGTTTATTGAATATACTAGATCATTTTGGGGATGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
* * * * *
2698230 ATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGAAAGACTCTTGCTATT
196 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
* * * *
2698295 CCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGTTCCCTTGAAGAAT
261 CCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
* * * *
2698360 ATGAACAACACTTGACTTTAGATTATAACAATCAACTTTGAATGCCTTGAATGTGTGAATTAAGA
326 ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
* * * * * *
2698425 GTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTTAATCGCATCCAA
391 GTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTT--TGT--T--CA---AA
* * * * * * * *
2698490 ATAATCCATTCGTAAAAGTCCCGTAACAAAATTCCTA-CCTGCACTATCTTTAATAAATCGATTA
447 CTCATCCATGCATAAAATTCCCATAACAAAATTCC-AGCCTGCACTATCTTCAATAAATCGATCA
* * * * * *
2698554 TATCTCAAGCTCTCGATAACGGATTG-GGATGATTCAAAAGGCATTGGAAAGATGAGAGATAGA-
511 TATCTCAAGCTCCCGATATCGGATTGAGG-TGATTCAAAAGGAATTGAAAAGATAAGAGATATAT
* * * * * * *
2698617 GAAATAATTCTCAATTGATTTCTAGAACCAAATATGTCTGTATCGCATCCAGAGTTTGAAGACAT
575 G-AATAATTCCCAATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACAT
* * * ** * * * *
2698682 TATGACTAATATTCTTTAATCTAATGAAACCGTTCAACGAATGTGACCCACTAGGTATATATGAT
639 TCTGACTGATATTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGAT
* * * * * * * **
2698747 CAGC-AAGAAACAAGTTCGATAACAAAAGGAAATGAAGACTACAAGACTATCTTAAAGATGATAA
704 GAGCTAGGAACCAA-TGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAA
* * *
2698811 AGTTCTACAAGAGAACAAGAATGA-AAACAAACTCT
768 AGTTCTACAAGAGAACAAGAATTATAGA-AACCTCT
* * * *
2698846 TAAAGTTGTTTTATTTATTCAAAATGTGTATATACAAATGATCCCAAAAGTGCC-ACTTTATAGT
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTA-TTTATAGT
* * * * * * * * *
2698910 ATTTCTAAGCAGCATATGAAAAGGCTCCAAAGATGAAAAATTCTCATCACTTTTGAAATAAAATG
65 ATTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATG
* * **
2698975 CACTTGAATGCTTTGTCTTCCTTATCTTCAAAGTTGAATGAATATTCTAGATCATTTTGGGGATG
130 CACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATG
* * * * *
2699040 AATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGACCAAGGGGCGGAAGACTCGTGCTAT
195 AATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTAT
* * * * *
2699105 TCCATGCTGAAAATTGTCTTAGTAAGTGAATTAAATCACCCTTCATTGTATGCTCCCTTGAAG-A
260 TCCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAA
* * * **
2699169 -AT-----A----TGA--TTAGATGATAACAATAACCTTTGAAGGCCTTGAATGTGTGATTTAAG
325 TATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAG
* * * * *
2699222 AG-TCATTCAATGGCTTGTTACTTGGCTGAAGTTGAAAA-ACTCTCCCTTGGTTCAAACTCATCC
390 AGTTC-TTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTC-AA---A--C
* *
2699285 AAATCATCCATGCATAAAATT-CCATAACAAAATTCCAACCTGCACTGTCTT-ATATAAATCGAT
448 ---TCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCA-ATAAATCGAT
* * * * * *
2699348 CATATCTCAAGCTCCCGATATCAGATTGAGGTGATTAAAAAGGCATTGGAAAGAAAAGAGATAGA
509 CATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATA
* * ** *
2699413 TGAATAATTCCCAAATGATTT-TTGAAACCAAACATGTATGTAT-GACATCTAGAATATGAAGAC
574 TGAATAATTCCCAATTGATTTCTTG-AACCAAACATGTCTGTATAGA-ATCCGGAATTTGAAGAC
* * * * * * * *
2699476 ATTCTAACTGATATTCTTACATCTGATTAAAACCGTTCAACGAATGTGACCCGCTAGCTATATAC
637 ATTCTGACTGATATTGTTGCATCTGA-TGAAACCGTTCAACAAACGTGACCCACTAGCTATATAT
** ** * * * *
2699541 GATGAGCTACTAACCAACACTATAATAAAAGGAAATGAAGACTACAAGACTACCTCGAAGCCGAT
701 GATGAGCTAGGAACCAATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGAT
* * * * *
2699606 AAGGTTGTACAAGAGAACAAGAATGAAAGCAACCTCT
766 AAAGTTCTACAAGAGAACAAGAATTATAGAAACCTCT
* * * *
2699643 CAAAGATGTTTTATATATTCAAAATATGTATATACAGATGATCCCAAAGGCGCCTCTTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
* * * * * ** *
2699708 TTTCTAAGCAACATATGAAAGGACACAAAAAATGAAAAATTCCCATCAATTTAGCAATAAAATTC
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
** * *
2699773 TA-TTTTATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAACG
131 -ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATG
* * * * *
2699837 AATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA--CTAGCTAT
195 AATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTAT
* * * *
2699900 TCCAAGC-GAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAA
260 TCCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAA
* * * *
2699964 TATGAACAACCCTTGACTTTAGATTATAACAATAAGCTTTGAATGCCTTGAATGTGTGAATTAAG
325 TATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAG
* * * * *
2700029 AGTCCTTCTATGGCTTCTAACTTGGCTGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATCCA
390 AGTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCA
* * * *
2700094 TGCCTAAAATTCCCGTAACAAAATTCCATCCTGCACTATCTTCAATAAATCGATCATATCTGAAG
455 TGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAG
* *
2700159 CTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTG-AAAGATAAGAGATAGATGAATAATTCC
520 CTCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTCC
* * * ** * * **
2700223 CAATTGATATCTTGAACCAATCATGTCTGTATAGGATTAGGAATTTGAATATATTCTGACTTTTA
585 CAATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATA
** * * *
2700288 TTGTTGCATCTGATGAAATTGTTCAACGAACGTGACCCACTAGCTATATATGATAAGATAGGAAC
650 TTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAAC
* ** * *
2700353 CAATGCTATAGCAAAATTAAATGAAGACTACAAGACTATCTTGAAGACGATAAAGTTCTACAA-A
715 CAATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
* **
2700417 GAACAAGAATTAAAGTGACCTCT
780 GAACAAGAATTATAGAAACCTCT
*
2700440 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTA
1 CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
* * ** * * *
2700505 TTTCTAAGCAACCTATGAAAAGACTCAAAAGATGCAAAATTGTCATCATTTTAGCAATTAAATGC
66 TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
* * * * *
2700570 ACTTGTATGCTTTGTCTTTCATAACTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGA
131 ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
* * * * * * * ** *
2700635 ATCAAGACAATTTGCATCTTAATTTGGCCTTAATTTCGTCCATGGGACGGAAGACTCTTGCTATT
196 ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
* * * * *
2700700 TCATGTTGAAAAA-TGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTCCCTTGAAGAA
261 CCATGCT-AAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAA
* * * *
2700764 TATGGACAACCCTTGACTTTAGATTG-TAACAATCATC-TTGTAATGACTTGAATGTGTGAATTC
325 TATGAACAACCCTTGACTTTAGA-TGATAACAATCATCTTTG-AATGCCTTGAATGTGTGAAATA
* * * * *
2700827 AGAGTCCTTCAATGGCTTTTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATC
388 AGAGTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATC
2700892 CA
453 CA
2700894 AATCGTCCAT
Statistics
Matches: 10335, Mismatches: 1593, Indels: 1474
0.77 0.12 0.11
Matches are distributed among these distances:
780 98 0.01
781 10 0.00
782 99 0.01
783 19 0.00
784 11 0.00
785 29 0.00
786 19 0.00
787 21 0.00
788 29 0.00
789 29 0.00
790 6 0.00
791 677 0.07
792 26 0.00
793 97 0.01
794 61 0.01
795 36 0.00
796 176 0.02
797 965 0.09
798 514 0.05
799 189 0.02
800 383 0.04
801 140 0.01
802 3640 0.35
803 3 0.00
804 6 0.00
805 12 0.00
806 10 0.00
807 231 0.02
808 46 0.00
809 173 0.02
810 407 0.04
811 931 0.09
812 7 0.00
813 1 0.00
815 5 0.00
816 4 0.00
817 1 0.00
818 1 0.00
820 3 0.00
821 9 0.00
822 2 0.00
823 2 0.00
824 7 0.00
825 5 0.00
826 9 0.00
827 28 0.00
828 30 0.00
829 34 0.00
830 24 0.00
831 39 0.00
832 32 0.00
833 40 0.00
834 21 0.00
835 26 0.00
836 18 0.00
837 20 0.00
838 10 0.00
839 8 0.00
840 2 0.00
841 4 0.00
842 1 0.00
843 1 0.00
845 4 0.00
846 5 0.00
847 4 0.00
848 5 0.00
849 14 0.00
850 17 0.00
851 14 0.00
852 14 0.00
853 10 0.00
854 2 0.00
855 4 0.00
856 1 0.00
857 6 0.00
858 6 0.00
859 12 0.00
860 5 0.00
861 14 0.00
862 5 0.00
863 5 0.00
864 4 0.00
865 5 0.00
866 1 0.00
867 25 0.00
868 25 0.00
869 12 0.00
870 9 0.00
871 6 0.00
872 10 0.00
873 16 0.00
874 24 0.00
875 20 0.00
876 14 0.00
877 11 0.00
878 11 0.00
879 6 0.00
880 13 0.00
881 9 0.00
882 12 0.00
883 8 0.00
884 11 0.00
885 12 0.00
886 13 0.00
887 7 0.00
888 12 0.00
889 8 0.00
890 17 0.00
891 4 0.00
892 2 0.00
893 4 0.00
894 10 0.00
895 6 0.00
896 9 0.00
897 8 0.00
898 9 0.00
899 16 0.00
900 10 0.00
901 16 0.00
902 4 0.00
903 5 0.00
904 3 0.00
905 16 0.00
906 10 0.00
907 14 0.00
908 14 0.00
909 19 0.00
910 4 0.00
911 4 0.00
912 1 0.00
913 10 0.00
914 5 0.00
915 4 0.00
916 4 0.00
917 4 0.00
918 6 0.00
919 12 0.00
920 16 0.00
921 5 0.00
922 7 0.00
923 8 0.00
924 16 0.00
925 8 0.00
926 12 0.00
927 11 0.00
928 7 0.00
929 9 0.00
930 9 0.00
931 8 0.00
932 10 0.00
933 6 0.00
934 4 0.00
935 6 0.00
936 4 0.00
937 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (802 bp):
CAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTA
TTTCTAAGTAACATATGAAAAGACTCAAAAGATTAAAAATTATCATCAATTTAGCAATAAAATGC
ACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGA
ATCTAGACAATTTGAAGCTGAATTTGGCCTTAAGTTCGACCAAGGGGTGGAACACTCTTGCTATT
CCATGCTAAAAATTTTCTTAATAAGTGAATTAAATTACCCTTCATTGCATGCTCCCTTGAAGAAT
ATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGA
GTTCTTCAATGGCTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTTGTTCAAACTCATCCAT
GCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGC
TCCCGATATCGGATTGAGGTGATTCAAAAGGAATTGAAAAGATAAGAGATATATGAATAATTCCC
AATTGATTTCTTGAACCAAACATGTCTGTATAGAATCCGGAATTTGAAGACATTCTGACTGATAT
TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAACC
AATGCTATAACAAAAGGAAATAAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAG
AACAAGAATTATAGAAACCTCT
Found at i:2694719 original size:811 final size:810
Alignment explanation
Indices: 2692446--2700906 Score: 11346
Period size: 811 Copynumber: 10.6 Consensus size: 810
2692436 CAATGCTGAA
* *
2692446 TATAGATTTAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAG-AA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
*
2692510 GCATATGAAAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATG-AAGTTGAATG
66 -CATATGAAAAGACTC-AAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAA-TTGAATG
* *
2692574 CTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATAATTTT-GGGATGAATCTAGA-A
128 CTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACA
*
2692637 ACTTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTC-T-CTATTCCATGATG
193 A-TTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTG
* * * *
2692700 -AAATTGTCTTGATAACTGAATTAAATCACCCTACATTGCATGCTACCTTGAAGAATATGAACAA
257 AAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAA
* * * *
2692764 CCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCTTGAATGTCTGAAATAAGAGTCCATCA
322 CCCTTGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCA
* * * *
2692829 ATGGCTTCTCACTTGGATGAAGCTGAAAAGACACTCTCTTGGTTC-AA---A--C---TCATCCA
387 ATGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCA
* *
2692885 TGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTATCTTCAATAAATCGATCATATCTCAAG
452 TGCATAAAATTCCCGTAACAAAATTCCTGCCTGCACTATCTTCAATAAATCGATCATATCTCAAG
* * * *
2692950 CTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGACAGATGAATAATTTC
517 CTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCC
* ** * * * *
2693015 CAAATGATTTCTTAAACCAAACATGTTTGTATAGAATCAAGAACT-TGAAGACATTCTGACTGAT
582 CAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAA-TATGAAGACATTCTGACTGAT
* * *
2693079 ATTGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAGCTATATATGATGAGCTAGGAA
646 ATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGATAGGAA
*
2693144 CCAACTCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAG
711 CCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAG
* * *
2693209 AGAACAAGAATTATAGAAACCTCTCAAAGATGTTT
776 AGAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
* * * *
2693244 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGTCTATTTGTAGTATTTCTAAGTAA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
* *
2693309 CATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGAAATTGAATGCT
66 CATATGAAAAGACTC-AAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCT
* *
2693374 TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAAT
130 TTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAAT
* * *
2693439 TTTAAGCTTAATTTGGCTTTAATTTCGTCCAAGGGATGGAAGACTCTTGCTATTCCATGCTGAAA
195 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAA
2693504 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATG----C----------T------CCC
260 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
2693549 TTGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
325 TTGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * *
2693614 GCTTGTCACTGGGATGAAATTGAGAAGACTCTCCCTTGGTTCAACCTCATCCAAATCATCCATGC
390 GCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
* * * * * * *
2693679 ACAAAATTCCCGTAATAAAATTCCTGCCTGCATTGTCTTCAGTAAATCGATCATATCTCTAGGTC
455 ATAAAATTCCCGTAACAAAATTCCTGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTC
*
2693744 CCGATATCGGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAA
520 CCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAA
* ** * * *
2693809 TTGAATTCCAGAACCAAACAGGTCTATATCGAATCCAGAATATGAAGACATTCTGACTGATATTC
585 TTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATATGAAGACATTCTGACTGATATTC
* * * * *
2693874 TTGCATCTGATGAAACCGTTCAAAGAATGTGACCCACTAGCTATATTTGACGAGATAGGAAACAA
650 TTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGATAGGAACCAA
* * * * *
2693939 CACTATAACAAAAGGAAATGACGAGTACAAGACTATCTTGAAGCCGATAATGTTCTATAGGAGAA
715 CACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAA
*
2694004 CAAGAATGAAAGCAACCTCTCAAAGTTGTTTTT
780 CAAGAATGAAAGCAACCTCTCAAAGATG--TTT
* * * *
2694037 TATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCTAAGCAG
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
* * *
2694102 CATATGAAAATACTC-AATATGAAAAATTCTAATCAATTTAGCAATAAAATGCAATTGAATGCTT
66 CATATGAAAAGACTCAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCTT
* *
2694166 TGTCTTTCTTATCTTCAAGGTTGGTTGAATATTGTAGATCATTTTGGGGATGAATTTAGACAATT
131 TGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATT
*
2694231 TGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGAAAGACTCTTGCTATTCCATGCTGAAAA
196 TGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAA
*
2694296 TTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACACT
261 TTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCT
* *
2694361 TGACTTTAGATTATAACAATCAGCTTTGAATGCCTCGAATGTGTGAATTAAGAGTCCTTCAATGG
326 TGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
* * * *
2694426 CTTGTCAATTGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCG
391 CTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
* *
2694491 TAAAAGTCCCGTAACAAAATTCCTGCCTCCACTATCTTCAATAAATCGATCATATCTCAAGCTCC
456 TAAAATTCCCGTAACAAAATTCCTGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCC
* * *
2694556 CGATAACGGATTG-GGATGATTCAAAAGGCATTGGAAAGATGAGAGATAGA-GAAATAATTCTCA
521 CGATATCGGATTGAGG-TGATTCAAAAGGCATTGGAAAGATAAGAGATAGATG-AATAATTCCCA
* * * *
2694619 ATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAGTGTGAAGACATTATGACTAATATT
584 ATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATATGAAGACATTCTGACTGATATT
** * *
2694684 CTTTAATCTAATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATCG-GCAATA--AA
649 CTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGAT-GAG--ATAGGAA
* ** **
2694746 CTAATTCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGATGATAAAGTTCTACAAG
711 CCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAG
* * *
2694811 AGAACAAGAATAAAAACAAACTCTCAAAGATGTTT
776 AGAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
* * *
2694846 TATTTATTCAAAATGTGTATATACAAATGATCCCAAAAGTGCCACTTTATAGTATTTCTAAG-AA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
* * * * *
2694910 GCATATGAAAAGGCTCAAAAGATGAAAAATTCTCATCACTTTTGAAATAAAATGCACTTGAATGC
66 -CATATGAAAAGACTC-AAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGC
* * *
2694975 TTTGTCTTTCTTATCTTCAAGGTTAGATGAATATTCTAGATTATTTTGGGGATGAATCTAGACAA
129 TTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAA
* * *
2695040 TTTGAAGCTTAATTTGGCCTTAATTTTGACCAAGGGGCGGAAGACTCTTGCTATTCCATGCTGAA
194 TTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAA
* *
2695105 AATTGTCTTACTAAGTGAATTAAATCACCCTTCATTGCATTCTCCCTTGAAGAATATGAACAACC
259 AATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACC
* * * *
2695170 CTTGACTTTAGATGATAACAATAATCTTTGAA-GTCCTTGAATGTGTGATTTAAGAGTCATTCAA
324 CTTGACTTTAGATTATAACAATCATCTTTGAATG-CCTTGAATGTGTGAATTAAGAGTCCTTCAA
* *
2695234 TGGCTTGTTACTTGGCTGAAGTTGAAAA-ACTCTCCCTTGGTTCAAACTCATCCAAATCATCCAT
388 TGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCAT
* ** *
2695298 GCATAAAATT-CCATAACAAAATTCCAACCTGCACTGTCTT-ATATAAATCGATCATATCTCAAG
453 GCATAAAATTCCCGTAACAAAATTCCTGCCTGCACTATCTTCA-ATAAATCGATCATATCTCAAG
* * *
2695361 CTCCCGATATCAGATTGAGGTGATTAAAAAGGCATTGGAAAGAAAAGAGATAGATGAATAATTCC
517 CTCCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCC
* * * *
2695426 CAAATGATTTCTGAAACCAAACATGTATGTAT-GACATCTAGAATATGAAGACATTCTGACTGAT
582 CAATTGATTTCTGGAACCAAACATGTCTGTATCG-CATCCAGAATATGAAGACATTCTGACTGAT
* * * *
2695490 ATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGCTAGCTATATACGATGAGCTAGGA
646 ATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGATAGGA
* * * *
2695555 ACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTACCTCGAAGCCGATAAGGTTGTACAA
710 ACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAA
*
2695620 AAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
775 GAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
* * **
2695656 TATATATTCAAAATGTGTATATACAGATGATCCCAATGGCACCTCTTTATAGTATTTCTAAGCAA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
* * * *
2695721 CATATGAAAGGACTAAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAATGCAATTGTATGCT
66 CATATGAAAAGACT-CAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCT
* *
2695786 TTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAACGAATCTAGACAAT
130 TTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAAT
* * * *
2695851 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGAGGAAGA--CTAGCTATTCTAAGC-GAAA
195 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAA
*
2695913 ATTGTCTTAATAAGTGAATTAAATCACTCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
260 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
* *
2695978 TTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCTATG
325 TTGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * * *
2696043 GCTTTTAACTTGGCTGAATTTGAAAAGACACTCCCTT-G-TCAAA--C-T-C--ATCA---ATGC
390 GCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
*
2696097 CTAAAATTCCCGTAACAAAATTCCAT-CCTGCACTATCTTCAATAAATCGATCATATCTCAAGCT
455 ATAAAATTCCCGTAACAAAATTCC-TGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCT
* * * *
2696161 CCCGATATCAGATTGAGGTGATTCAAAAGGCATTGAAAAGATAAGAGACAGATGAATAATTTCCA
519 CCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCA
* * * * *
2696226 ATTGATTTCTTGAACCAAACATGTCTGTATAGAATCAAGAAGT-TGAAGAAATTCTGACTGATAT
584 ATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAA-TATGAAGACATTCTGACTGATAT
* * * * * *
2696290 TGTTGCATCTGATGAAACCGTTCAACAAACGTGACCCACTAACTATATATGAAGAGCTTGGAACC
648 TCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGATAGGAACC
* *
2696355 AACTCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTCAAGCCGATAAAGTTCTACAAGAG
713 AACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAG
* * *
2696420 AACAAGAATTATAGAAACCTCTCAAAGATGTTT
778 AACAAGAATGAAAGCAACCTCTCAAAGATGTTT
* *
2696453 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGTAA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
*
2696518 CATATGAAAAGACTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATG-AACTTGAATGC
66 CATATGAAAAGACTC-AAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAA-TTGAATGC
* ** * *
2696582 TTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTATGAATAAATCTAGACAA
129 TTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAA
* * *
2696647 TTTTAAGCTTAATTTGGCTTTAATTCCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAA
194 TTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAA
*
2696712 AATTATCTTAATAAGTGAATTAAATCACCCTTCATTGCATG----C----------T------CC
259 AATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACC
* *
2696757 CTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTGACTGTGTGAATTAAGAGTCCTTCAAT
324 CTTGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAAT
* * *
2696822 GGCTTGTCACTGGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATG
389 GGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATG
* * * *
2696887 CACAAAATTCCCGTAACAAAATTCCTGTCTGCACTGTCTTCAGTAAATCGATCATATCTCAAGCT
454 CATAAAATTCCCGTAACAAAATTCCTGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCT
* *
2696952 CCCGATATCGGATTGGGGTAATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCA
519 CCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCA
* * * * *
2697017 ATTGAGTTCCT-GATCCAAACATGTCTATATCGAATCCAGAATATGAAGACATACTGACTGATAT
584 ATTGA-TTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATATGAAGACATTCTGACTGATAT
* * * *
2697081 TCTTGCATATGATGAAACCGTTCAAAGAACGTGACCCACTAGCTATATTTGACGAGATAGGAGA-
648 TCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGATAGGA-AC
* * * * *
2697145 CAACACTATAACAAAAGGAAATGACGAGTACAAGACTATCTTGAAGCCGATAATGTTCTATAGGA
712 CAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
*
2697210 GAACAAGAATGAAAGTAACCTCTCAAAGATGTTTTT
777 GAACAAGAATGAAAGCAACCTCTCAAAGATG--TTT
* * * *
2697246 TATATATTCAAAATGTGTATCTACAAATGATCCCAAAGGTGCATTTTTATAGTATTTCTAAGCAG
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
* * * * * * * *
2697311 CATATGAAAATACTC-AATATGAAAATTTTTAATCAATTTAGGAATGAAATGCACTTGAATGCTT
66 CATATGAAAAGACTCAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCTT
*
2697375 TGTCTTTCTTATCTTCAAGGTTGGTTGAATATTGTAGATCATTTTGGGGATGAATCTAGACAATT
131 TGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATT
*
2697440 TGAAGCTTAATTTGGCCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAA
196 TGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAA
* * * *
2697505 TTTTCTTAATAAGTGAATTAAATTAACCTTCATTGCATCCTCCCTTGAAGAATATGAACAACCCT
261 TTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCT
*
2697570 TGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAAATAAGAGTCCTTCAATGG
326 TGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
* * *
2697635 GTTCTCACTTGGATGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCAT-C----CAT---T-CA
391 CTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
* * * *
2697691 TAAAATTCCCATAAAAAAATTCCAGCCTCCACTATCTTCAATAAATCGATCATATCTCAAGCTCC
456 TAAAATTCCCGTAACAAAATTCCTGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCC
* * *
2697756 CGATATCGGATTGAGGTGATTCTAAAGGCATTGGAAAGATAAGAGATAGATAAATAATTACCAAT
521 CGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAAT
* * * * * ** **
2697821 TGATTTATGAAACCAAAGATATCTGTATCACATTTAGAATCGGAAGACATTCTGACTGATATTCT
586 TGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATATGAAGACATTCTGACTGATATTCT
* * * * *
2697886 TGTATATGATGAAACCGTTCAACGAACGTGACCCGCTAGCTATATATGATGAGCTAGTAACCAAC
651 TGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGATAGGAACCAAC
* *
2697951 ACTATAACAAAAGGAAAAGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAATAGAAC
716 ACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
* *
2698016 AAGAATTAAAGCAACCTCTCAAGGATGTTT
781 AAGAATGAAAGCAACCTCTCAAAGATGTTT
* * * * *
2698046 TATATATTCAAAATGTGTATCTACAAATGATCCAAAAGATGCCTATTTATAGTATTTCTATGCAA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
* * * *
2698111 CATATGAAAAGACTCAAAAGATGAAACATTCCCATCAATTTAGCAATAAAATGCACTTGAATGAT
66 CATATGAAAAGACTC-AAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCT
* ** *
2698176 TTGTCTTTCTTATCTTCAACGTTTATTGAATATACTAGATCATTTTGGGGATGAATCTAGACAAT
130 TTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAAT
*
2698241 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGAAAGACTCTTGCTATTCCATGCTGAAA
195 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAA
* *
2698306 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGTTCCCTTGAAGAATATGAACAACAC
260 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
*
2698371 TTGACTTTAGATTATAACAATCAACTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
325 TTGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * * * * *
2698436 GCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTTAATCGCATCCAAATAATCCATTC
390 GCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
* * * * *
2698501 GTAAAAGTCCCGTAACAAAATTCCTACCTGCACTATCTTTAATAAATCGATTATATCTCAAGCTC
455 ATAAAATTCCCGTAACAAAATTCCTGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTC
* * * *
2698566 TCGATAACGGATTG-GGATGATTCAAAAGGCATTGGAAAGATGAGAGATAGA-GAAATAATTCTC
520 CCGATATCGGATTGAGG-TGATTCAAAAGGCATTGGAAAGATAAGAGATAGATG-AATAATTCCC
* * * * * *
2698629 AATTGATTTCTAGAACCAAATATGTCTGTATCGCATCCAGAGTTTGAAGACATTATGACTAATAT
583 AATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATATGAAGACATTCTGACTGATAT
** * * * * *
2698694 TCTTTAATCTAATGAAACCGTTCAACGAATGTGACCCACTAGGTATATATGATCAGCA-A-GAAA
648 TCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAG-ATAGGAAC
** * * **
2698757 CAAGTTCGATAACAAAAGGAAATGAAGACTACAAGACTATCTTAAAGATGATAAAGTTCTACAAG
712 CAA-CACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAG
* * * *
2698822 AGAACAAGAATGAAAACAAACTCTTAAAGTTGTTT
776 AGAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
* * * *
2698857 TATTTATTCAAAATGTGTATATACAAATGATCCCAAAAGTGCCACTTTATAGTATTTCTAAGCAG
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
* * * * *
2698922 CATATGAAAAGGCTCCAAAGATGAAAAATTCTCATCACTTTTGAAATAAAATGCACTTGAATGCT
66 CATATGAAAAGACT-CAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCT
* * **
2698987 TTGTCTTCCTTATCTTCAAAGTTGAATGAATATTCTAGATCATTTTGGGGATGAATCTAGACAAT
130 TTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAAT
* * *
2699052 TTGAAGCTTAATTTGGCCTTAATTTCGACCAAGGGGCGGAAGACTCGTGCTATTCCATGCTGAAA
195 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAA
* *
2699117 ATTGTCTTAGTAAGTGAATTAAATCACCCTTCATTGTATGCTCCCTTGAAG-A-AT-----A---
260 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
* * * * * *
2699172 -TGA--TTAGATGATAACAATAACCTTTGAAGGCCTTGAATGTGTGATTTAAGAGTCATTCAATG
325 TTGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* *
2699234 GCTTGTTACTTGGCTGAAGTTGAAAA-ACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
390 GCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
* ** *
2699298 ATAAAATT-CCATAACAAAATTCCAACCTGCACTGTCTT-ATATAAATCGATCATATCTCAAGCT
455 ATAAAATTCCCGTAACAAAATTCCTGCCTGCACTATCTTCA-ATAAATCGATCATATCTCAAGCT
* * *
2699361 CCCGATATCAGATTGAGGTGATTAAAAAGGCATTGGAAAGAAAAGAGATAGATGAATAATTCCCA
519 CCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCA
* * * * * *
2699426 AATGATTTTTGAAACCAAACATGTATGTAT-GACATCTAGAATATGAAGACATTCTAACTGATAT
584 ATTGATTTCTGGAACCAAACATGTCTGTATCG-CATCCAGAATATGAAGACATTCTGACTGATAT
* * * * * * **
2699490 TCTTACATCTGATTAAAACCGTTCAACGAATGTGACCCGCTAGCTATATACGATGAGCTACTAAC
648 TCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGATAGGAAC
* * * * *
2699555 CAACACTATAATAAAAGGAAATGAAGACTACAAGACTACCTCGAAGCCGATAAGGTTGTACAAGA
712 CAACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGA
2699620 GAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
777 GAACAAGAATGAAAGCAACCTCTCAAAGATGTTT
* * *
2699654 TATATATTCAAAATATGTATATACAGATGATCCCAAAGGCGCCTCTTTATAGTATTTCTAAGCAA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
* * * * * * **
2699719 CATATGAAAGGACACAAAAAATGAAAAATTCCCATCAATTTAGCAATAAAATTCTATTTTATGCT
66 CATATGAAAAGACTC-AAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCT
* * *
2699784 TTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGAACGAATCTAGACAAT
130 TTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAAT
* *
2699849 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA--CTAGCTATTCCAAGC-GAAA
195 TTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAA
2699911 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
260 ATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
* * *
2699976 TTGACTTTAGATTATAACAATAAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCTATG
325 TTGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
* * * *
2700041 GCTTCTAACTTGGCTGAAGTTGAAAAGACACTCCCTTGGTTC-AA---A--C---TCATCCATGC
390 GCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGC
* *
2700097 CTAAAATTCCCGTAACAAAATTCCAT-CCTGCACTATCTTCAATAAATCGATCATATCTGAAGCT
455 ATAAAATTCCCGTAACAAAATTCC-TGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCT
2700161 CCCGATATCGGATTGAGGTGATTCAAAAGGCATT-GAAAGATAAGAGATAGATGAATAATTCCCA
519 CCCGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCA
* * * * * * * * * **
2700225 ATTGATATCTTGAACCAATCATGTCTGTATAGGAT-TAGGAATTTGAATATATTCTGACTTTTAT
584 ATTGATTTCTGGAACCAAACATGTCTGTATCGCATCCA-GAATATGAAGACATTCTGACTGATAT
* ** *
2700289 TGTTGCATCTGATGAAATTGTTCAACGAACGTGACCCACTAGCTATATATGATAAGATAGGAACC
648 TCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGATAGGAACC
** * ** *
2700354 AATGCTATAGCAAAATTAAATGAAGACTACAAGACTATCTTGAAGACGATAAAGTTCTACAA-AG
713 AACACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAG
* **
2700418 AACAAGAATTAAAGTGACCTCTCAAAGATGTTT
778 AACAAGAATGAAAGCAACCTCTCAAAGATGTTT
2700451 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
1 TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
* * * * * * *
2700516 CCTATGAAAAGACTCAAAAGATGCAAAATTGTCATCATTTTAGCAATTAAATGCACTTGTATGCT
66 CATATGAAAAGACTC-AAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCT
* * * *
2700581 TTGTCTTTCATAACTTCAAGGTT-GTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAA
130 TTGTCTTTCTTATCTTCAAGGTTGGT-TGAATATTCTAGATCATTTTGGGGATGAATCTAGACAA
* * * ** * *
2700645 TTTGCATCTTAATTTGGCCTTAATTTCGTCCATGGGACGGAAGACTCTTGCTATTTCATGTTGAA
194 TTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAA
* * *
2700710 AAATGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTCCCTTGAAGAATATGGACAACC
259 AATTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACC
* * *
2700775 CTTGACTTTAGATTGTAACAATCATC-TTGTAATGACTTGAATGTGTGAATTCAGAGTCCTTCAA
324 CTTGACTTTAGATTATAACAATCATCTTTG-AATGCCTTGAATGTGTGAATTAAGAGTCCTTCAA
* * *
2700839 TGGCTTTTCACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCGTCCAT
388 TGGCTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCAT
2700904 GCA
453 GCA
2700907 CTTGAATGCT
Statistics
Matches: 6727, Mismatches: 769, Indels: 323
0.86 0.10 0.04
Matches are distributed among these distances:
780 96 0.01
781 1 0.00
782 104 0.02
783 1 0.00
784 1 0.00
785 1 0.00
786 3 0.00
788 6 0.00
790 3 0.00
791 1029 0.15
792 6 0.00
793 152 0.02
794 53 0.01
795 17 0.00
796 168 0.02
797 972 0.14
798 512 0.08
799 191 0.03
800 369 0.05
801 20 0.00
802 671 0.10
803 3 0.00
804 4 0.00
805 5 0.00
806 9 0.00
807 228 0.03
808 41 0.01
809 249 0.04
810 398 0.06
811 1409 0.21
812 2 0.00
813 3 0.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (810 bp):
TATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCAA
CATATGAAAAGACTCAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGAATGCTT
TGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATT
TGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAA
TTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCT
TGACTTTAGATTATAACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGG
CTTGTCACTTGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCA
TAAAATTCCCGTAACAAAATTCCTGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTCC
CGATATCGGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAATAATTCCCAAT
TGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAATATGAAGACATTCTGACTGATATTCT
TGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGATAGGAACCAAC
ACTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
AAGAATGAAAGCAACCTCTCAAAGATGTTT
Found at i:2704293 original size:751 final size:753
Alignment explanation
Indices: 2702846--2704314 Score: 2013
Period size: 751 Copynumber: 2.0 Consensus size: 753
2702836 AAATAAAATG
* * * * *
2702846 CTCAAAAGATGAAAAATTCTCATCACTTTTGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
1 CTCAAAACATGAAAAATTCCCATCAATTTAGAAATAAAATGCAATTGAATGCTTTGTCTTTCTTA
* * *
2702911 TCTTCAAGGTTGGATGAATATTCTAAATTATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
66 TCTTCAAGGTTGGATGAATATTCTAAATCATTTTGGGAACGAATCTAGACAATTTGAAGCTTAAT
* * * *
2702976 TTGGCCTTAATTTTGACCAAGGGGCGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTACTA
131 TTGGCCTTAATTTCGACCAAGGGGCGGAAGAC-CTAGCTATTCCAAGCTGAAAATTGTCTTAATA
* * *
2703041 TGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGTACAACCCTTGACTTTAAAT
195 AGTGAATTAAATCACCATTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAAAT
* * * * *
2703106 GATAACAATAATCTTTGAAGGCCTTGAATGTGTGATTTAAGAGTCATTCAATGTCTTGTTACTTT
260 GATAACAATAAGCTTTGAAGGCCTTGAATGTGTGAATTAAGAGTCATTCAATGTCTTCTAACTTG
*
2703171 GCTGAAGTTGAAAAACTCTCAAACTCATCCAAATAATCCATGCATAAAATTCCATAACAAAATTC
325 GCTGAAGTTGAAAAACACTCAAACTCATCCAAATAATCCATGCATAAAATTCCATAACAAAATTC
* * *
2703236 CCGCCTGCACTGTCTTATATAAATTGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTC
390 CAGCCTGCACTATCTTATATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTC
* * * *
2703301 AAAAGGCATTGGAAAGAAAAGAGATAGTTGAATAATTCCCAAATGATTTCTGAAACCAAACATGT
455 AAAACGCATTGAAAAGAAAAGAGATAGATGAATAATTCCCAAATGATATCTGAAACCAAACATGT
* * *
2703366 ATGTATAACATCTAGAATCTGAAGACATTCTGACTGATATTCTTGGATCTGATTAAAATCGTTCA
520 ATGTATAACATCTAGAATCTGAAGACATTCTGACTGATATTCTTGCAACTGATTAAAATCATTCA
* * *
2703431 ACGAACGTGACCCGCTAGCTATATACGACGAGCTAGGAACCAACACTATAACAAAAGAAAATAAA
585 ACGAAAGTGACCCACTAGCTATATACGACAAGCTAGGAACCAACACTATAACAAAAGAAAATAAA
** * * * *
2703496 GACTACAAGACTACCTCTAAGCCGATCAGGTTGTACAAAAGAACAAGAATGAAAGCAACCTCTCA
650 GACTACAAGACTACCTAGAAGACGATAAAGTTCTACAAAAGAACAAGAATGAAAGCAACCTCTCA
2703561 AAGCCTCTTTATAGTATTTCTAAGCAACATATGAAAGGA
715 AAGCCTCTTTATAGTATTTCTAAGCAACATATGAAAGGA
* *
2703600 CTCAAAACATGAAAAATTCCCATCAATTTAGCAATAAAATGCAATTGTATGCTTTGTCTTTCTTA
1 CTCAAAACATGAAAAATTCCCATCAATTTAGAAATAAAATGCAATTGAATGCTTTGTCTTTCTTA
* *
2703665 TCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAACGAATCTAGACAATTTGAAGCTTAAT
66 TCTTCAAGGTTGGATGAATATTCTAAATCATTTTGGGAACGAATCTAGACAATTTGAAGCTTAAT
* * *
2703730 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGA-CTAGCTATTCTAAGC-GAAAATTGTCTTAATAA
131 TTGGCCTTAATTTCGACCAAGGGGCGGAAGACCTAGCTATTCCAAGCTGAAAATTGTCTTAATAA
* * *
2703793 GTGAATTAAATCACTATTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATT
196 GTGAATTAAATCACCATTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAAATG
* * * * *
2703858 ATAACAATCAGCTTTGAATGCCTTGAATGTGTTAATTAAGAGTCCTTCTAT-TGCTTCTAACTTG
261 ATAACAATAAGCTTTGAAGGCCTTGAATGTGTGAATTAAGAGTCATTCAATGT-CTTCTAACTTG
** ** * * * *
2703922 GCTGAAGTTGAAAAGACACTCCCA-TGGTTCAAACTCATCCATGCCTAAAATTCCCGTAACAAAA
325 GCTGAAGTTGAAAA-ACACTCAAACTCATCCAAA-TAATCCATGCATAAAATT-CCATAACAAAA
* * *
2703986 TTCCATCCTGCACTATCTTCA-ATAAATCGATCATATCTCAAGCTCCCGTTATCGGATTGAGGTG
387 TTCCAGCCTGCACTATCTT-ATATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTG
* *
2704050 ATTCAAAACGCATTGAAAAGATAAGAGATAGATGAATAATTCCCAATTGATATCTTG-AA-CAAA
451 ATTCAAAACGCATTGAAAAGAAAAGAGATAGATGAATAATTCCCAAATGATATC-TGAAACCAAA
* * * * * *
2704113 TCATGTCTGTATAGCAT-TAGGAATTTGAAGATATTCTGACTGATATTGTTGCAACTGA-TGAAA
515 -CATGTATGTATAACATCTA-GAATCTGAAGACATTCTGACTGATATTCTTGCAACTGATTAAAA
* * * * **
2704176 TTATTCAACGAAAGTGACCCACTAGCTATATATGATAAGCTAGGAACCAACGCTATAACAAAATT
578 TCATTCAACGAAAGTGACCCACTAGCTATATACGACAAGCTAGGAACCAACACTATAACAAAAGA
* * * * **
2704241 AAATGAAGACTACAAGACTATCTAGAAGATGATAAAGTTCTAC-AAAGAACAAGAATTAAAGTGA
643 AAATAAAGACTACAAGACTACCTAGAAGACGATAAAGTTCTACAAAAGAACAAGAATGAAAGCAA
2704305 CCTCTCAAAG
708 CCTCTCAAAG
2704315 ATGTTTTATA
Statistics
Matches: 621, Mismatches: 86, Indels: 19
0.86 0.12 0.03
Matches are distributed among these distances:
750 1 0.00
751 175 0.28
752 133 0.21
753 163 0.26
754 149 0.24
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (753 bp):
CTCAAAACATGAAAAATTCCCATCAATTTAGAAATAAAATGCAATTGAATGCTTTGTCTTTCTTA
TCTTCAAGGTTGGATGAATATTCTAAATCATTTTGGGAACGAATCTAGACAATTTGAAGCTTAAT
TTGGCCTTAATTTCGACCAAGGGGCGGAAGACCTAGCTATTCCAAGCTGAAAATTGTCTTAATAA
GTGAATTAAATCACCATTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAAATG
ATAACAATAAGCTTTGAAGGCCTTGAATGTGTGAATTAAGAGTCATTCAATGTCTTCTAACTTGG
CTGAAGTTGAAAAACACTCAAACTCATCCAAATAATCCATGCATAAAATTCCATAACAAAATTCC
AGCCTGCACTATCTTATATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCA
AAACGCATTGAAAAGAAAAGAGATAGATGAATAATTCCCAAATGATATCTGAAACCAAACATGTA
TGTATAACATCTAGAATCTGAAGACATTCTGACTGATATTCTTGCAACTGATTAAAATCATTCAA
CGAAAGTGACCCACTAGCTATATACGACAAGCTAGGAACCAACACTATAACAAAAGAAAATAAAG
ACTACAAGACTACCTAGAAGACGATAAAGTTCTACAAAAGAACAAGAATGAAAGCAACCTCTCAA
AGCCTCTTTATAGTATTTCTAAGCAACATATGAAAGGA
Found at i:2708091 original size:799 final size:799
Alignment explanation
Indices: 2706217--2708595 Score: 3412
Period size: 799 Copynumber: 3.0 Consensus size: 799
2706207 AAACTCATCA
*
2706217 TGCACTATCTTCAATAAATCGATCATATCTAAAGCTCCCGATATCGGATTGAGGTGATTCAAAAG
1 TGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAG
* *
2706282 GCAATGAAAAGATAAGAGATAGATTAATAATTCCCAATTGATATATTGAACCAATCATGTCTGTA
66 GCATTGAAAAGATAAGAGA-AGATGAATAATTCCCAATTGATATATTGAACCAATCATGTCTGTA
* **
2706347 TAGCATTAGGAATTTGAATATATTCTGACTTTTATTGTTGCATCTGATGAAATTGTTCAACGAAC
130 TAGCATTAGGAATTTGAAGATATTCTGACTAATATTGTTGCATCTGATGAAATTGTTCAACGAAC
2706412 GTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAATTAAATGAAGACTAC
195 GTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAATTAAATGAAGACTAC
* * *
2706477 AAGACTATTTTGAAGACAATAACGTTATACAAAGAACAAGAATTAAAGTGACCTCTCAAAGATGT
260 AAGACTATCTTGAAGACGATAAAGTTATACAAAGAACAAGAATTAAAGTGACCTCTCAAAGATGT
*
2706542 TTTATGTATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGC
325 TTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGC
* *
2706607 AACATATGAAAAGACTCAAAAGATGGAAAATTATCATCATTTTAGCAATAAAATGCACTTGAATG
390 AACATATGAAAAGATTCAAAAGATGAAAAATTATCATCATTTTAGCAATAAAATGCACTTGAATG
* *
2706672 CTTTGTCTTTCATATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGATTAAATCAAGACA
455 CTTTGTCTTTCATATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACA
* *
2706737 ATTTGAAGCTTAATTTGGCCTTAATTTCGTCCATTGGGTGGAAGACTCTTGATATTTCATGCTGA
520 ATTTGAAGCTTAATTTGGCCTTAATTTCGTCCATGGGGTGGAAGAC-CTTGCTATTTCATGCTGA
* * * *
2706802 AAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGTTCCCTTGAAGATTATGAACAAT
584 AAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTCCCTTGAAGAATATGAACAAC
* * * *
2706867 CCATGACTTTAGATGATAACAAATCACCTTTGAATGCCTTGAATGTATGAATTAAGAGTCATTCA
649 CCTTGACTTTAGATTATAAC-AATCACCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCA
* * * * * *
2706932 ATGGCTTGTCAA-TTGGATGAAATTGAGATGACTCTCCTTTGGTTCAAAATGATCCAAATCATCC
713 ATGGCTTCT-AACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTC--AA--A--C---TCATCC
* *
2706996 ATGCGTAAAATTCCCGTAACAAAATTCATGCC
768 ATGCCTAAAATTCCCGTAACAAAATTCATCCC
* * * * *
2707028 TGCACTGTCTTCAATAAATCGATCCTATCTCAAGC-CCCTGATTTTGGATTGGGGTGATTCAAAA
1 TGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCC-GATATCGGATTGAGGTGATTCAAAA
* * ** * * * * * *
2707092 GGCATTCAAAAGATAAGA-AATATAGAAATAATTCTTAATTTATTTATGGAACAAAACAAGTCTG
65 GGCATTGAAAAGATAAGAGAAGAT-G-AATAATTCCCAATTGATATATTGAACCAATCATGTCTG
* * * * * * **
2707156 TATCGTATCTA-GAGTTTGAAGAAATTCAT-ACTAATATTCTTGCATATGATGAAACCGTTCAAC
128 TATAGCAT-TAGGAATTTGAAGATATTC-TGACTAATATTGTTGCATCTGATGAAATTGTTCAAC
* **
2707219 GAACGTGACCCACTAGGTATATATGATGAGCTAGGAACCAACGCTATAACAAAAGGAAATGAAGA
191 GAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAATTAAATGAAGA
* * * * * **
2707284 CTACAAGACAATCTTGAAGCCGATAAGGTTGTACAAGAGAATAAGAATTAAAGAAACCTCTCAAA
256 CTACAAGACTATCTTGAAGACGATAAAGTTATACAA-AGAACAAGAATTAAAGTGACCTCTCAAA
** *
2707349 TTTGTTTTATATATTCAAAATGTGTATATACAGATGATCCCAAAGGTGCCTCTTTATAGTATTTC
320 GATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTC
* * * ** * * *
2707414 TAAGCAACATTTGAAAGGATTCAAAAGATGAAAAAATCCCATCAATTTAGAAATAAAATGCAATT
385 TAAGCAACATATGAAAAGATTCAAAAGATGAAAAATTATCATCATTTTAGCAATAAAATGCACTT
* * * * * * *
2707479 GTATGCTTTGTATTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGTAACGAATCT
450 GAATGCTTTGTCTTTCATATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCA
* * * * *
2707544 AGACAATTTTAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA-CTAGCTATTCCAAG
515 AGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCATGGGGTGGAAGACCTTGCTATTTCATG
* *
2707608 C-GAAAATTGTCTTAATAAGTGAATTAAATCACCCTTCATAGCATGCTCCCTTGAAGAATATGAA
580 CTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTCCCTTGAAGAATATGAA
* *
2707672 CAACCCTTGACTTTAGATTATAACAATCAGCTTTGAATGCCTTTAATGTGTGAATTAAGAGTCCT
645 CAACCCTTGACTTTAGATTATAACAATCACCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCT
* *
2707737 TCTATGGCTTCTAACTTGGCTGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCCTA
710 TCAATGGCTTCTAACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCATGCCTA
2707802 AAATTCCCGTAACAAAATTCCA-CCC
775 AAATTCCCGTAACAAAATT-CATCCC
2707827 TGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAG
1 TGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAG
*
2707892 GCATTGAAAAGATAAGAGAGAGATGAATAATTCCCAATTGATATCTTGAACCAATCATGTCTGTA
66 GCATTGAAAAGATAAGAGA-AGATGAATAATTCCCAATTGATATATTGAACCAATCATGTCTGTA
* *
2707957 TAGCATTAGGAATTTGAAGATATTCTGACTGATATTGTTGCATCTGATGAAATTATTCAACGAAC
130 TAGCATTAGGAATTTGAAGATATTCTGACTAATATTGTTGCATCTGATGAAATTGTTCAACGAAC
* *
2708022 GTGACCCACTAGCTATATAAGATGAGCTAGGAACCAACGCTATAACAAAATTAAATAAAGACTAC
195 GTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAATTAAATGAAGACTAC
*
2708087 AAGACTATCTTGAAGACGATAAAGTTCTACAAAGAACAAGAATTAAAGTGACCTCTCAAAGATGT
260 AAGACTATCTTGAAGACGATAAAGTTATACAAAGAACAAGAATTAAAGTGACCTCTCAAAGATGT
2708152 TTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGC
325 TTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGC
* * * *
2708217 AACCTATGAAAAGACTT-AAAAGATGCAAAATTGTCATCATTTTAGCAATTAAATGCACTTGAAT
390 AACATATGAAAAGA-TTCAAAAGATGAAAAATTATCATCATTTTAGCAATAAAATGCACTTGAAT
* *
2708281 GCTTTGTCTTTCATAACTTCAAGGTTGTTTGAATATTCTAGATCATTTTGGGAATGAATCAAGAC
454 GCTTTGTCTTTCATATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGAC
* * *
2708346 AA-TTGCAGCTTAATTTGGCCTTAATTTTGTCCATGGGGCGGAAGACTCTTGCTATTTCATGCTG
519 AATTTGAAGCTTAATTTGGCCTTAATTTCGTCCATGGGGTGGAAGAC-CTTGCTATTTCATGCTG
* * * *
2708410 AAAAATGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTCCCTTGAAAAATATGGACTA
583 AAAATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTCCCTTGAAGAATATGAACAA
* *
2708475 CCCTTGACTTTAGATTATAACAATCATC-TTGTAATGACTTGAATGTGTGAATTAAGAGTCCTTC
648 CCCTTGACTTTAGATTATAACAATCACCTTTG-AATGCCTTGAATGTGTGAATTAAGAGTCCTTC
* *
2708539 AATGGCTTTTGACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCA
712 AATGGCTTCTAACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCA
2708596 AATCATCCAT
Statistics
Matches: 1375, Mismatches: 175, Indels: 47
0.86 0.11 0.03
Matches are distributed among these distances:
797 38 0.03
798 203 0.15
799 291 0.21
800 177 0.13
801 3 0.00
802 1 0.00
804 1 0.00
806 2 0.00
807 2 0.00
808 74 0.05
809 82 0.06
810 15 0.01
811 239 0.17
812 247 0.18
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (799 bp):
TGCACTATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAAAAG
GCATTGAAAAGATAAGAGAAGATGAATAATTCCCAATTGATATATTGAACCAATCATGTCTGTAT
AGCATTAGGAATTTGAAGATATTCTGACTAATATTGTTGCATCTGATGAAATTGTTCAACGAACG
TGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAACAAAATTAAATGAAGACTACA
AGACTATCTTGAAGACGATAAAGTTATACAAAGAACAAGAATTAAAGTGACCTCTCAAAGATGTT
TTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGTATTTCTAAGCA
ACATATGAAAAGATTCAAAAGATGAAAAATTATCATCATTTTAGCAATAAAATGCACTTGAATGC
TTTGTCTTTCATATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAA
TTTGAAGCTTAATTTGGCCTTAATTTCGTCCATGGGGTGGAAGACCTTGCTATTTCATGCTGAAA
ATTGTCTTAATAAGTGAATTAAATCACCTTTCATTGCATGCTCCCTTGAAGAATATGAACAACCC
TTGACTTTAGATTATAACAATCACCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATG
GCTTCTAACTTGGCTGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTCATCCATGCCTAAAATTC
CCGTAACAAAATTCATCCC
Found at i:2711225 original size:812 final size:808
Alignment explanation
Indices: 2708633--2715529 Score: 8703
Period size: 812 Copynumber: 8.6 Consensus size: 808
2708623 AAATAAAATG
* * *
2708633 CTCAAAAGATGAAAAATTCTCATCACTTTTGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
*
2708698 TCTTCAAGGTTGGATGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTT---G---AA-
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
* * * * *
2708756 ---G-CTTAATTTCGACCAAGGGGCGGAAGGCTCTTGCTATTCCATGCTGAAAATTATCTTACTA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
* *
2708817 AGTGAATTAAATCACCCTTCATTGCATTCTCCCTTGAAGAATATGAACAACCCTTAACTTTAGAT
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
* * * * * *
2708882 GATAACAATAATCTTTGAA-GTCCTTGAATGTGTGATTTAACAGTCATTCAATGGCTTGTTACTT
261 GATAACAATCAGCTTTGAATG-CCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTT
* *
2708946 GGCTGAAGTTGAAAA-ACTATCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATT-CC
325 GGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACT-ATCCAAATCATCCATGCATAAAATTCCC
* * *
2709009 ATAACAAAATTCCA-GCCTGCACTGTCTT-ATATAAATAGATCATATCTCAAGCTCCCGATATCA
389 GTAACAAAATT-CATGCCTGCACTGTCTTCA-ATAAATCGATCATATCTCAAGCTCCCGATATCG
* * * * *
2709072 GATTGAGGTGATTCAAAAGCCATTGGAAAGAAAAGAGATAGATGAATAATTCCCAAATGATTTCT
452 GATTGAGGTGATTCAAAAGGCATTCGAAAGATAAGAGATAGA--AATAATTCTCAATTGATTTCT
* * **
2709137 -GAAGCCAAATATGTATGTAT-GACATCTAGAATCTGAAGACATTCTTTCTAATATTCTTGCATC
515 GGAA-CCAAACATGTATGTATCG-CATCTAGAATTTGAAGACATTCTGACTAATATTCTTGCATC
* * * * **
2709200 AGATTAAAACCGTTCAACGAACGTGACCCGCTAGCTATATACGATGAGCTAGGAACCAACACTAT
578 TGA-TGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTAT
* * * *
2709265 AACAAAAGGAAATGAAGACTACAAGACT-ACCTCGAAGCCGATAAGGTTGTACAAAAGAACAAGA
642 AACAAAAGGAAATGAAGACTACAAGACTAACTTC-AAGCCGATAAAGTTCTACAAGAGAACAAGA
* * * * *
2709329 ATGAAAGCAACCTCTCAAAGATGTTTTATATGTTCAAAATGTGTATATACAGATGATCCCAAAAG
706 ATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGG
* * * *
2709394 CGCCTCTTTATAGTATCTCTAAGCAACATATGAAAGGA
771 TGCCTCTTTATAGTATTTCTAAGCAGCATATGAAAAGA
* * *
2709432 CTCAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAATGCAATTGTATGCTTTGTCTTTCTTA
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
* * ** * * * * *
2709497 TCTTCAAGCTTGGTTGAATATTCTAGATCATTTCAGGAACGATTTTAGACAATTTAAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
* * * *
2709562 TTGGCCTTAATTTCGTCCAAGGGGTGGTAGACTCTAGCTATTCCTTG-TGAAAGTTGTCTTAATA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
* *
2709626 AGTGAATTAAATCACCCTTCATTGCTTCCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
* * * *
2709691 TATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCC-T--ATTGCTTATAACTTG
261 GATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTG
* * *
2709753 GCTGAAGTTGAAAAGACACTCTCTTGGTTC-AA--A--C---TCATCCATGCATAAAATTCCCGT
326 GATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTATCCAAATCATCCATGCATAAAATTCCCGT
**
2709810 AACAAAATTCCAT-CCTGCACAATCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGAT
391 AACAAAATT-CATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGAT
* * *
2709874 TGATGTGATTCAAAAGGCACT-GAAAAGATAAGAGATAGATGAATAATTAC-CAATTGATTTCTT
455 TGAGGTGATTCAAAAGGCATTCG-AAAGATAAGAGATAGA--AATAATT-CTCAATTGATTTCTG
* * * * *
2709937 GAACCAAACATGTATGTATAGCATC-AGGAATTAGAAAATATTCTGACTGAAT-TTGTTGCATCT
516 GAACCAAACATGTATGTATCGCATCTA-GAATTTGAAGACATTCTGACT-AATATTCTTGCATCT
** * *
2710000 GATGAAATTGTTCAACGAATGTGACCCACTAGCTATATATGATGAGCTAGGAACCAACGCTATAA
579 GATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAA
** * * * * ** *
2710065 CAAAATTAAATAAAGACTAGAAGACTATCTTGAAGAGGATAAAGTTCTACAA-AGAACAAGAATT
644 CAAAAGGAAATGAAGACTACAAGACTAACTTCAAGCCGATAAAGTTCTACAAGAGAACAAGAATG
* * *
2710129 AAAGCAACCTCTCAAAGATGATTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGC
709 AAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGC
* *
2710194 CTCTTTATAGTATTTCTAAGCAACATACGAAAAGA
774 CTCTTTATAGTATTTCTAAGCAGCATATGAAAAGA
* * * * * *
2710229 CTCAAAAGATGGAAAATTGTCATCATTTTAGCGATAAAATGCACTTGAATGCTTTGTGTTTCATA
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
* * * *
2710294 TCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGATAATTTGAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
* * *
2710359 TTGGCCTTAATTTCGTCCATGGAGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
* *
2710424 AGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
* * *
2710489 GATAACAAATCAGCTTTGAATTCCTTGAATGTCTGAATTAAGAGTCCTTCAATGGCTTGTCAATT
261 GATAAC-AATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTT
* * * * *
2710554 GGATGAAATTGAGACGACTCTCCTTTGGTTCAAACTGATCCAAATCATCCATGCGTAAAATTCCC
325 GGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACT-ATCCAAATCATCCATGCATAAAATTCCC
* * * * *
2710619 GAAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGAACCTATCTCAAGCCCCCGATATTGGA
389 GTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGA
* * * * * *
2710684 TTGGGGTGATTCAAATGGCATTCGAAATATAAGAAACTTAGAAATAATTCTTAATTTATTTCTGG
454 TTGAGGTGATTCAAAAGGCATTCGAAAGATAAGAGA--TAGAAATAATTCTCAATTGATTTCTGG
* * * * * *
2710749 AACCAAACATGTCTGTATCGTATCCAGAGTTTGAAGAAATTCAT-ACTAATATTCTTGCATCCGA
517 AACCAAACATGTATGTATCGCATCTAGAATTTGAAGACATTC-TGACTAATATTCTTGCATCTGA
* * * *
2710813 TGAAACCATTCAATGAACGTGACCCACTAGGTATATATGATGAGCTAGGAACCAATTCTATAACA
581 TGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAACA
*
2710878 AAAGGAAATGAAGACTACAAGACTAACTTCAAGCCAATAAAGTTCTACAAGAGAACAAGAATGAA
646 AAAGGAAATGAAGACTACAAGACTAACTTCAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAA
* * **
2710943 AACAAACTCTCAAACATGTTTTATAAATTCAGTATGTGTATATACAAATGATCCCAAAGGTGCCT
711 AACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCT
*
2711008 ATTTATAGTATTTCTAAGCAGCATATGAAAACG-
776 CTTTATAGTATTTCTAAGCAGCATATGAAAA-GA
* * * *
2711041 CTCAACAGACGAAAAATTCTCATCAATTTAGAAATAATATGCACTTGAATGCTTTGTCTTTCTTA
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
* * * *
2711106 TCTTCAAGGTTGACTAAATATTCTAGATCATTTTGGGGATGAATCTAGATAATTTAAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
* **
2711171 TTGGCCTTAAATTCCACCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
* * *
2711236 AGCGATTTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATGTGAACAACCCTTGACTTTAGAT
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
* * * * * * *
2711301 GATAACAATCATCTTTGAAGGCCATGAATGTGTGATTTAAGAGTCATTCAATGGCTTTTTACTTG
261 GATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTG
* * *
2711366 GATGAAGTT-AAAAAACTCTCCCTTGGTTCAAACTCATCGAAATCATCCATGCATAAAATTCCCA
326 GATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACT-ATCCAAATCATCCATGCATAAAATTCCCG
* * *
2711430 TAACAAAATTCCA-GCCTGCACTGTCTTAAATAAATCGATCATATCTGAAGCTCCCGATATCAGA
390 TAACAAAATT-CATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGA
* * * * *
2711494 TTGAGGTGATTCAAAAGGCATTCGAAAGAAAATAGATATATAAATAATTCCCAATTGATTTCTGA
454 TTGAGGTGATTCAAAAGGCATTCGAAAG-ATA-AGAGATAGAAATAATTCTCAATTGATTTCTGG
* * * *
2711559 AACCAAACATGTATGTATCAG-ATCAAGAATCTAAAGACATTCTGACTGATATTCTTGCATCTGA
517 AACCAAACATGTATGTATC-GCATCTAGAATTTGAAGACATTCTGACTAATATTCTTGCATCTGA
* * * **
2711623 TTAAAACCGTTCAACGAACGTGACCCGCTAGCTATATACGATGAGCTAGGAACCAACACTATAAC
581 -TGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAAC
* * * *
2711688 AAAAGGAAATGAAGACTACAAGACT-ACATCGAAGCCGACAAAGTTCTAGAAGAGAACAATAATG
645 AAAAGGAAATGAAGACTACAAGACTAACTTC-AAGCCGATAAAGTTCTACAAGAGAACAAGAAT-
* * * * *
2711752 GAAGA-AACCTCTCAAAGATGTTTTATATATTCAAAATATGTATATACAGATGGTCCCAAAGGTG
708 GAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTG
* * *
2711816 ACTCTTTATAGTATTTCTAAGC-GTCATTTGAAAGGA
773 CCTCTTTATAGTATTTCTAAGCAG-CATATGAAAAGA
* * * *
2711852 CTCATAAGATGAAAAATTATCATCAGTTTAGCAATAAAATGCAATT-ATATGCTTTGTCTTTCTT
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGA-ATGCTTTGTCTTTCTT
* * * * *
2711916 ATCTTCAAGGTTGGCTGAATATTCTATATCATTGTGGGAACGAATCCAGACAATTTGTAA-CTTA
65 ATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTG-AAGCTTA
* * * *
2711980 ATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGA--CTAGCTATTCCAAGC-GAAAATTATCATAA
129 ATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAA
2712042 TAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAG
194 TAAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAG
* * ** *
2712107 ATTATAACAAACAAATTTGAATGCCTTGAATGTGTGAATTTAGAGTCCTTCAATGGCTTGTCACT
259 ATGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACT
* * * *
2712172 TGGATGAAATTGAGAAGACTCTCCCTTGGTTC-AA--A--C---TCATCCATGCCTAAAATTTCC
324 TGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTATCCAAATCATCCATGCATAAAATTCCC
* * * * * * *
2712229 GTAACAAAAATCCCT-CTTGCACTATCTTCAATAAACCGATCATATGTGAAGCTCCCGATATCGG
389 GTAAC-AAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGG
* * * * *
2712293 ATTTAGATGATTCAAAAGGCATT-GAAAAGTTAAGAGATAGATGAATAATTCCCAATTGATATCT
453 ATTGAGGTGATTCAAAAGGCATTCG-AAAGATAAGAGATAGA--AATAATTCTCAATTGATTTCT
** * * * * *
2712357 TAAACCAATCATGTATGTATAGCAT-TAGGAATTTGAAGATATTCTGACTGATATTGTTGCATCT
515 GGAACCAAACATGTATGTATCGCATCTA-GAATTTGAAGACATTCTGACTAATATTCTTGCATCT
*** * ***
2712421 GATGAAATTATTCAACGAACGTGACCCACTAGCTATATATGATGAGTTAGGAACCAACATTATAA
579 GATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAA
** * * * *
2712486 CAAAATTAAATGAAGACTACAAGAATATCTTGAAGACGATAAAGTTCTACAA-AGAACAAGAACT
644 CAAAAGGAAATGAAGACTACAAGACTAACTTCAAGCCGATAAAGTTCTACAAGAGAACAAGAA-T
*** * *
2712550 -AAAGTGACCTCTCAAATATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTG
708 GAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTG
* * *
2712614 CTTCTTTATAGTATTTCTAAGCAACGTATGAAAAGA
773 CCTCTTTATAGTATTTCTAAGCAGCATATGAAAAGA
* * * *
2712650 CTCAAAAGATGGAAAATTGTCATCATTTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCATA
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
* * *
2712715 TCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
* *
2712780 TTGGCCTTAATTTCGTCCATGGGGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
* * * * * *
2712845 AGTGAATTAAATCATCTTTTATTGCATGCTCCCTTGAATAATATGAATAACTCTTGACTTTAGAT
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
* * * *
2712910 GATAACAAATCAGCTTTGAATGCCTTGAATATCTAAATTAAGAGTCATTCAATGGCTTGTCACTT
261 GATAAC-AATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTT
* * * * * *
2712975 GGATGAAATTGAGAAGACTCTCCCTTGGTTCTAACTGATCCAAATCGTCCATGCGTAAAATTTCC
325 GGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACT-ATCCAAATCATCCATGCATAAAATTCCC
* * *
2713040 GTAACAAAATTCATGCCTGCATTGTCTTCAATAAATCGATCCTATCTCAAGCCCCCGATATCGGA
389 GTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGA
*
2713105 TT-ACGGTGATTCAAAAGGCATTCGAAAGATAAGAGATATAGAAATAATTCTTAATTGATTTCTG
454 TTGA-GGTGATTCAAAAGGCATTCGAAAGATAAGAG--ATAGAAATAATTCTCAATTGATTTCTG
* * * *
2713169 GAACCAAACATGTCTGTATCGTATCTAGAATTTAAATACATTCAT-ACTAATATTCTTGCATCTG
516 GAACCAAACATGTATGTATCGCATCTAGAATTTGAAGACATTC-TGACTAATATTCTTGCATCTG
* *
2713233 ATGAAACCGTTCAACGAACGTGACCCAATAGGTATATATGATGAGCTAGGAACCAATGCTATAAC
580 ATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAAC
* *
2713298 AAAAGGAAATGAAGACTACAAGACTAACTTCAAGCGGATAAAGTTCTACAAGAGAACAAGAAAGA
645 AAAAGGAAATGAAGACTACAAGACTAACTTCAAGCCGATAAAGTTCTACAAGAGAACAAGAATGA
* * *
2713363 AAACAAACTCTCAAAGATGTTTTATAAATTCAATATGTGTATATACAAATGATCCGAAAGGTGCC
710 AAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCC
* * *
2713428 TATTTATAGTATTTATAAGCAGCATATGAAAAGG
775 TCTTTATAGTATTTCTAAGCAGCATATGAAAAGA
* * * *
2713462 CTCAAAATAAGAAAAATTCCCATCAATTTAGCAATAATAA-GCTCTTGAATGCTTTGTCTTTCTT
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAA-AATGCACTTGAATGCTTTGTCTTTCTT
*
2713526 ATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTTAA
65 ATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAA
* * * * *
2713591 TTTGGCTTTAATTTCGTCCAAGGGGTGGAAGACTCGTACTATTTCATGCTGAAAATTGTCTGAAT
130 TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAAT
* * * *
2713656 AAGTGAATTAAATCACCTTTTATTACATTCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGA
195 AAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGA
* * *
2713721 TGATAACAAATCAGCTTTGAATGCCTTGAACGTGCGAATTAAGAGTCCTTAAATGGCTTGTCACT
260 TGATAAC-AATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACT
* * *
2713786 TGGATGAAATTGAAAAAACTCTCTCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCC
324 TGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACT-ATCCAAATCATCCATGCATAAAATTCC
* * * * * *
2713851 CGTAACAAAATTCATGCATGTACTATCTTCAAAAAAATCGATCATA-CTCAAGCTCTCGATATCA
388 CGTAACAAAATTCATGCCTGCACTGTCTTC-AATAAATCGATCATATCTCAAGCTCCCGATATCG
* * * * * * * *
2713915 GATCGGGGTAATTAAAAAGTCATTGGAAAGATAAGAGACGGAGAAATAATTCTCAACTGATTTCT
452 GATTGAGGTGATTCAAAAGGCATTCGAAAGATAAGAGA--TAGAAATAATTCTCAATTGATTTCT
* * * * * * *
2713980 GGAACTAAACATGTATGTATCGCATCAAGAGTTTGATGACATTATGACTAATATTTTTGAATCTG
515 GGAACCAAACATGTATGTATCGCATCTAGAATTTGAAGACATTCTGACTAATATTCTTGCATCTG
* * * * *
2714045 ATGAAACCATTCAACGAACGTTACCCACTAGGTATATATGATGAGCTAGGAACCCATGCTATAAG
580 ATGAAACCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAAC
* * *
2714110 AAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTATAAGAGAACAAGAATGA
645 AAAAGGAAATGAAGACTACAAGACTAACTTCAAGCCGATAAAGTTCTACAAGAGAACAAGAATGA
* *
2714175 AAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTACA
710 AAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCC
* *
2714240 TTTTTATAGTATTTCAAAGCAGCATATGAAAAGA
775 TCTTTATAGTATTTCTAAGCAGCATATGAAAAGA
* *
2714274 CTCAAAAGATGAAAAATTATCATCAATTTAGCAATAAAATGCACTTGAATGATTTGTCTTTCTTA
1 CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
* *
2714339 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGTATCTAGACAATATGAAGCTTAAT
66 TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
* * *
2714404 TTGGCCTTAATTTCTTTCAAGTGGTGGAAGACTC-T-CTATTCCATGCTGAAAATTGTCTTAATA
131 TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
* *
2714467 AGTAAATTAAATCACCCTTCATTGCATGCTACCTTGAAGAATATGAACAACCCTTGACTTTAGAT
196 AGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
* * * * * *
2714532 GATAACAATCATCTTTGAATGCATTGAATGTGTGAATTAAGAGTCCTTCTACT-TCTTTTAACTT
261 GATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTC-AATGGCTTGTCACTT
* * * * *
2714596 CGCTGAAGTTGAAAAGACACTCTCGTT-GTTC--A--AT-C---TCATCCATGAATAAAATTCCC
325 GGATGAAGTTGAAAAGACTCTC-CCTTGGTTCAAACTATCCAAATCATCCATGCATAAAATTCCC
* * **
2714652 GTAACAAAATTCCTACCTGCACTGTCTTCAACGAATCGATCATAGT-T-AAGCTCCCGATATCGG
389 GTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATA-TCTCAAGCTCCCGATATCGG
* * * * * *
2714715 ATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGACAGAGAAATAATTATCAACTGATTTTTG
453 ATTGAGGTGATTCAAAAGGCATTCGAAAGATAAGAG--ATAGAAATAATTCTCAATTGATTTCTG
* * * *
2714780 GAGCCAAACATGTATGTATCGCATCTAGAGTTTGAAGACATTCTAACTAATATTCTTGAATCTGA
516 GAACCAAACATGTATGTATCGCATCTAGAATTTGAAGACATTCTGACTAATATTCTTGCATCTGA
* *
2714845 TGAAACCGTTCAACGAACGTGACCCACTATG-TATATATGATGAGCTAGGAACCATTGCTTTAAC
581 TGAAACCGTTCAACGAACGTGACCCACTA-GCTATATATGATGAGCTAGGAACCAATGCTATAAC
* * * *
2714909 AAAATGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTTTACAAGAGAACAAGAATGA
645 AAAAGGAAATGAAGACTACAAGACTAACTTCAAGCCGATAAAGTTCTACAAGAGAACAAGAATGA
*
2714974 AAATAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCC
710 AAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCC
*
2715039 TATTTATAGTATTTCTAAGCAGCATATGAAAATG-
775 TCTTTATAGTATTTCTAAGCAGCATATGAAAA-GA
*
2715073 CTCAACAA-ATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTT
1 CTCAA-AAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTT
* * * * * *
2715137 ATCTTAAAGGTTGGTTGAATATTCTAGATCAATTTGGGGATGAATCTATATAATTTAAAGCTTAA
65 ATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAA
* * *
2715202 TTTGGCCTTAATTTCGACCAAGGGGTGGAAGACACTTGCTATTCCATGC-GAAAAGTGTCTTAAT
130 TTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAAT
*
2715266 AAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTAAAGAATATGAACAACCCTTGACTTTAGA
195 AAGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGA
* ** * * *
2715331 TTATAACAATCAGCTTTGAATGCCTTGAATGTGTGAA-TAAGGAGT-CTTTTATGGATTCTAACT
260 TGATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAA-GAGTCCTTCAATGGCTTGTCACT
* *
2715394 TGGCTGAAGTTGAAAAGACACTCCCTTGGTTCAAAC--T-C--AT--T-CATGCATAAAATTCCC
324 TGGATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTATCCAAATCATCCATGCATAAAATTCCC
* *
2715451 GTAACAAAATTCCAT-CCTGCACTATCTTCAATAAATCGATCATATCTCAAGCTACCGATATCGG
389 GTAACAAAATT-CATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGG
**
2715515 ATTGAGAAGATTCAA
453 ATTGAGGTGATTCAA
2715530 GGTTGGCTGA
Statistics
Matches: 5307, Mismatches: 668, Indels: 245
0.85 0.11 0.04
Matches are distributed among these distances:
797 258 0.05
798 444 0.08
799 993 0.19
800 384 0.07
801 99 0.02
802 117 0.02
803 6 0.00
804 2 0.00
805 3 0.00
806 30 0.01
807 13 0.00
808 143 0.03
809 214 0.04
810 354 0.07
811 917 0.17
812 1305 0.25
813 25 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (808 bp):
CTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTA
TCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAAT
TTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATA
AGTGAATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGAT
GATAACAATCAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTG
GATGAAGTTGAAAAGACTCTCCCTTGGTTCAAACTATCCAAATCATCCATGCATAAAATTCCCGT
AACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCGGATT
GAGGTGATTCAAAAGGCATTCGAAAGATAAGAGATAGAAATAATTCTCAATTGATTTCTGGAACC
AAACATGTATGTATCGCATCTAGAATTTGAAGACATTCTGACTAATATTCTTGCATCTGATGAAA
CCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGG
AAATGAAGACTACAAGACTAACTTCAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAA
ACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTA
TAGTATTTCTAAGCAGCATATGAAAAGA
Found at i:2715866 original size:385 final size:384
Alignment explanation
Indices: 2715143--2715902 Score: 1104
Period size: 385 Copynumber: 2.0 Consensus size: 384
2715133 TCTTATCTTA
* * *
2715143 AAGGTTGGTTGAATATTCTAGATCAATTTGGGGATGAATCTATATAATTTAAAGCTTAATTTGGC
1 AAGGTTGGCTGAATATTCTAGATCAATTTGGGGATGAATCTAGACAATTTAAAGCTTAATTTGGC
*
2715208 CTTAATTTCGACCAAGGGGTGGAAGACACTTGCTATTCCATGCGAAAAGTGTCTTAATAAGTGAA
66 CTTAATTTCGACCAAGGGGTGGAAGACACTTGCTATTCCATGCGAAAAGTGTCTTAATAAGTAAA
* *
2715273 TTAAATCACCCTTCATTGCATGCTCCCTTAAAGAATATGAACAACCCTTGACTTTAGATTATAAC
131 TTAAATCACCCTTCATTGCATGCTACCTTAAAGAATATGAACAACCCTTGACTTTAGATGATAAC
* * *
2715338 AATCAGCTTTGAATGCCTTGAATGTGTGAATAAGGAGTCTTTTATGGATTCTAACTTGGCTGAAG
196 AATCAGCTTTGAATACCTTGAATGTGTGAATAAGGAGTCTTCTATGGATTCTAACTTCGCTGAAG
* *
2715403 TTGAAAAGACACTCCCTTGGTTCAAACTCATTCATGCATAAAATTCCCGTAACAAAATTCCATCC
261 TTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAAAAAAATTCCATCC
*
2715468 TGCACTATCTTCAATAAATCGATCATATCTCAAGCTAC-CGATATCGGATTGAGAAGATTC
326 TGCACTATCTTCAATAAATCGATCATA-CTCAAGCT-CTAGATATCGGATTGAGAAGATTC
* *
2715528 AAGGTTGGCTGAATATTCTAGAT-AATTTTGGGGATGTATCTAGACAATTTGAAGCTTAATTTGG
1 AAGGTTGGCTGAATATTCTAGATCAA-TTTGGGGATGAATCTAGACAATTTAAAGCTTAATTTGG
*** * * *
2715592 CCTTAATTTCTTTCAAGTGGTGGAAGACTC-T-CTATTCCATGCTGAAAATTGTCTTAATAAGTA
65 CCTTAATTTCGACCAAGGGGTGGAAGACACTTGCTATTCCATGC-GAAAAGTGTCTTAATAAGTA
* ** * *
2715655 AATTCAATCACTTTTCCTTGCATGCTACCTTGAAGAATATGAACAACCCTTGACTTTAGATGATA
129 AATTAAATCACCCTTCATTGCATGCTACCTTAAAGAATATGAACAACCCTTGACTTTAGATGATA
*
2715720 ACAATCAGCTTTGAATACCTTGAATGTGTGAATTAA-GAGTCCTTCTAT-GACTTTTAACTTCGC
194 ACAATCAGCTTTGAATACCTTGAATGTGTGAA-TAAGGAGT-CTTCTATGGA-TTCTAACTTCGC
* * *
2715783 TGAAGTTGAAAATACACTCCCATT-GTTCAATCTCATCCATGCGTAAAATTCCCGTAAAAAAATT
256 TGAAGTTGAAAAGACACTCCC-TTGGTTCAAACTCATCCATGCATAAAATTCCCGTAAAAAAATT
* *
2715847 -CATGCCTGCTCTGTCTTCAATAAATCGATCATACTCAAGCTCTAGATATCGGATTG
320 CCAT-CCTGCACTATCTTCAATAAATCGATCATACTCAAGCTCTAGATATCGGATTG
2715903 GGGTGATTCA
Statistics
Matches: 336, Mismatches: 31, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
383 12 0.04
384 139 0.41
385 183 0.54
386 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (384 bp):
AAGGTTGGCTGAATATTCTAGATCAATTTGGGGATGAATCTAGACAATTTAAAGCTTAATTTGGC
CTTAATTTCGACCAAGGGGTGGAAGACACTTGCTATTCCATGCGAAAAGTGTCTTAATAAGTAAA
TTAAATCACCCTTCATTGCATGCTACCTTAAAGAATATGAACAACCCTTGACTTTAGATGATAAC
AATCAGCTTTGAATACCTTGAATGTGTGAATAAGGAGTCTTCTATGGATTCTAACTTCGCTGAAG
TTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAAAAAAATTCCATCC
TGCACTATCTTCAATAAATCGATCATACTCAAGCTCTAGATATCGGATTGAGAAGATTC
Found at i:2717009 original size:17 final size:19
Alignment explanation
Indices: 2716977--2717011 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
2716967 AAGCAACCTC
2716977 TCAAAGATGTTTTATATAT
1 TCAAAGATGTTTTATATAT
2716996 TCAAA-ATG-TTTATATA
1 TCAAAGATGTTTTATATA
2717012 CAGATGATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 3 0.19
19 5 0.31
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.46
Consensus pattern (19 bp):
TCAAAGATGTTTTATATAT
Found at i:2719770 original size:810 final size:803
Alignment explanation
Indices: 2717956--2720311 Score: 3063
Period size: 797 Copynumber: 2.9 Consensus size: 803
2717946 TGGAACAAAT
* *
2717956 TTAT-ACTAATATTATTGCATCTGATGAAAGCATTCAACGAACGTGACCCACTAGGTATATATGA
1 TTATGACTAATATTCTTGCATCTGATGAAAGCGTTCAACGAACGTGACCCACTAGGTATATATGA
*
2718020 TGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAA
66 TGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTT-AAGCTGATAA
2718085 AGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATATGTA
130 AGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATATGTA
* *
2718150 TATACAAATGATCCCAAAGGTGCATTTTTATAGTATTTC-AATGCAGCATATGAAAAGACTCAAA
195 TATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAA-GCAGCATATGAAAAGACTCAAA
* * *
2718214 AGATGAAATATTTTCATCAATTTAGTAATAAAATGCACTTGAATGATTTGTATTTCTTATCTTCA
259 AGATGAAAAATTCTCATCAATTTAGTAATAAAATGCACTTGAATGCTTTGTATTTCTTATCTTCA
*
2718279 AGGTTGGCTGAATATTCTAGATCATTTTGGCGATGAATCTAGACAATTTGAAGCTTAATTTGGCC
324 AGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCC
* * *
2718344 TTAATTTCGTTC--GGGTTGTGGAGGACTC-T-CTATTCCATGCTGAAAATTGTCTTAATAAGTA
389 TTAATTTCGTCCAAGGG--GTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTG
* * * * *
2718405 AAATAAATCACCCTTCAATGCATGGTACCTTGAAGAATATGAACAACCCTTTACTTTAGATGATA
452 AATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATA
* * * *
2718470 ACAATCATCTTTGAATGCCTTGAATGTCTGAATTAAGAGTCCTTCTATGGCTTTTAACTTCGCTG
517 ACAATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCTTTC-ATGGCTTCTAACTTGGCTG
* * * * * * *
2718535 CATTTG-AAAAGACACTCTT-GTT---GT-TCAAACTCATCCATGCGTAAAA-TCCCTGTAAAAA
581 AAGTTGAAAAAGACTCCCTTGGTTCAAATGTCAAA-TCATCCATGCATAAAATTCCC-GT-AACA
** * *
2718593 AAATTCTTGCCTGCACTGTC-TACAATAAATCGATCATA-CTCAAGCTCTCGATATCGGATTGGG
643 AAATTCCAGCCTGCACTGTCTTA-AATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAG
* * * * * **
2718656 GTGATTCAAAAGGCATTGGAAATATAAGAGACAAGA-GAATAATACTCAA-CTAATTTGGAGTCA
707 GTGATTCAAAAGGCATTGGAAAGATAAGAGA-AAGATGAATAATTCCCAATTTAATTTGAAACCA
* *
2718719 AACAGTATGTATCGCATCCAGAGTTTGAAGACA
771 AACAGTATGTATCACATCCAGAATTTGAAGACA
** * * ** *
2718752 TCCTGACTAATATTCTTGAATTTGATGAATCCGTTCAACGAACGTGACCCACTAGGTGTATATGA
1 TTATGACTAATATTCTTGCATCTGATGAAAGCGTTCAACGAACGTGACCCACTAGGTATATATGA
* *
2718817 TGAGCTAGGAACCAATGCTTTAACAAAAGGAAATGAAGACTACAAGACTATCTGGT-AG-TCGAT
66 TGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTAACT--TAAGCT-GAT
* * *
2718880 AAAGTTCTATAAGAGAACAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAATATATG
128 AAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATATG
* *
2718945 TATATACAAATGATCCTAAAGGTGCCTATTTATAGTATTTCTAAGCAGTATATGAAAACG-CTCA
193 TATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAA-GACTCA
* * *
2719009 ACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTT
257 AAAGATGAAAAATTCTCATCAATTTAGTAATAAAATGCACTTGAATGCTTTGTATTTCTTATCTT
* * * *
2719074 CAAGGTTGGCTGAATATTTTAGATCAATTTGGGGATGAATCTAGATAATCTG-AGCTTAATTTGG
322 CAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGG
* *
2719138 CCTTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGCG
387 CCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTG
* * ** *
2719203 AATTAAATCAACCTTCATTGTATGCTCCCTTGAAGAATATGAATGACCCTTGACTTTAAATGATA
452 AATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATA
* * *
2719268 ACAATCTTCTTTGAA-GTCCTTGAAAGTGTGATTTAAGAGTCTTTCAATGGCTTGCT-ACTTGGC
517 ACAATCATCTTTGAATG-CCTTGAATGTGTGAATTAAGAGTCTTTC-ATGGCTT-CTAACTTGGC
* * *
2719331 TGAAGTTGAAAAAGTCTCCCTTGGTTCAAACTCGTCCAAATCATCCATGTATAAAATTCCCATAA
579 TGAAGTTGAAAAAGACTCCCTTGGTTCAAA-T-GT-CAAATCATCCATGCATAAAATTCCCGTAA
* * *
2719396 CAAAATTCCAGCCTGCACTGTCTTAAATAAATCGATCATATCTGAAACTCCCGATATCAGATTGA
641 CAAAATTCCAGCCTGCACTGTCTTAAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGA
* * ** *
2719461 GGTGATTCGAAAGGCATTGGAAAGAAAAGAGTTAGATGAATAATTCCCAATTTATTTATGAAACC
706 GGTGATTCAAAAGGCATTGGAAAGATAAGAGAAAGATGAATAATTCCCAATTTAATT-TGAAACC
* * *
2719526 AAACATGTTTGTATCACATCTATAATCTT-AAGACA
770 AAACA-GTATGTATCACATCCAGAAT-TTGAAGACA
* * * * *
2719561 TTATGACTGATATTCTTGCATCTGATTAAAAGCGTTCAACGAACGTGACCCGCTAGCTATATACG
1 TTATGACTAATATTCTTGCATCTGA-TGAAAGCGTTCAACGAACGTGACCCACTAGGTATATATG
* ** *
2719626 ATGAGCTACGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTACCCTTAAGCTGATA
65 ATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTA-ACTTAAGCTGATA
* * * * *
2719691 AAGCTCTAGAAGAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGT
129 AAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATATGT
* * * *
2719756 ATATACAGATGATCCCAAAAGTGCCTCTTTATAGTATTTCTAATCAGCATATGAAAAGACTCAAA
194 ATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAA
* * * *
2719821 AGATGAAAAGTTCTCATCAATTTCGTAATAAAATGCAATTGTATGCTTTGTATTTCTTATCTTCA
259 AGATGAAAAATTCTCATCAATTTAGTAATAAAATGCACTTGAATGCTTTGTATTTCTTATCTTCA
* * *
2719886 AGGTTGGTTGAATATTCTAGATCATTTTGGGAACGAATCTAGACAATTTGAAGCTTAATTTGGCC
324 AGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCC
* * * *
2719951 TTAATTTCGTCCAA-GGGTGGAAGACACTAGCTATTCCATGC-GAAAAGTGTATTAATAAGTGAA
389 TTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAA
* *
2720014 TTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAAA
454 TTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC
* * * *
2720079 AAGCAGCTTTGAATGCCTTGAATGTGTGAATTAGGAGTCCTTT-ATGGATTCTAACTTGGCTGAA
519 AATCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGT-CTTTCATGGCTTCTAACTTGGCTGAA
*
2720143 GTTGAAAAGACACTCCCTTGGTTCAAA---C---TCATCCATGCATAAAATTCCCGTAACAAAAT
583 GTTGAAAA-AGACTCCCTTGGTTCAAATGTCAAATCATCCATGCATAAAATTCCCGTAACAAAAT
* * *
2720202 TCCATCCTGCACTATCTTCAAA-AAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGAGA
647 TCCAGCCTGCACTGTCTT-AAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGA
* * *
2720266 TTCAAAAGGAATTGAAAAGATAAGAGAGAGAT-AATAATTCCCAATT
711 TTCAAAAGGCATTGGAAAGATAAGAGAAAGATGAATAATTCCCAATT
2720312 CGCTGAAGTT
Statistics
Matches: 1353, Mismatches: 167, Indels: 77
0.85 0.10 0.05
Matches are distributed among these distances:
796 36 0.03
797 334 0.25
798 148 0.11
799 26 0.02
800 112 0.08
801 3 0.00
803 1 0.00
804 1 0.00
805 39 0.03
806 76 0.06
807 14 0.01
808 34 0.03
809 166 0.12
810 333 0.25
811 30 0.02
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (803 bp):
TTATGACTAATATTCTTGCATCTGATGAAAGCGTTCAACGAACGTGACCCACTAGGTATATATGA
TGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTAAGCTGATAAA
GTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATATGTAT
ATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAG
ATGAAAAATTCTCATCAATTTAGTAATAAAATGCACTTGAATGCTTTGTATTTCTTATCTTCAAG
GTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTT
AATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATT
AAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAA
TCATCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCTTTCATGGCTTCTAACTTGGCTGAAGTT
GAAAAAGACTCCCTTGGTTCAAATGTCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCA
GCCTGCACTGTCTTAAATAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGTGATTCAA
AAGGCATTGGAAAGATAAGAGAAAGATGAATAATTCCCAATTTAATTTGAAACCAAACAGTATGT
ATCACATCCAGAATTTGAAGACA
Found at i:2720479 original size:175 final size:176
Alignment explanation
Indices: 2720137--2720479 Score: 525
Period size: 175 Copynumber: 2.0 Consensus size: 176
2720127 TTCTAACTTG
2720137 GCTGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAAT
1 GCTGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAAT
2720202 TCCATCCTGCACTATCTTCAAAAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGAGAT
66 TCCATCCTGCACTATCTTCAAAAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGAGAT
2720267 TCAAAAGGAATTGAAAAGATAAGAGAGAGATAATAATTCCCAATTC
131 TCAAAAGGAATTGAAAAGATAAGAGAGAGATAATAATTCCCAATTC
* * *
2720313 GCTGAAGTTGAAAAGACACTCCGTT-GTTCAATCTCATCCATGCGTAAAATTCCCGTAACAAAAT
1 GCTGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAAT
* ** * *
2720377 TCC-TGCCTGCACTGTCTTCAACGAATCGATCATAGT-T-AAGCTCCCGATATCGGATTGGGGTG
66 TCCAT-CCTGCACTATCTTCAAAAAATCGATCATA-TCTCAAGCTCCCGATATCGGATTGAGGAG
* *
2720439 ATTCAAAAGGCATTGGAAAGATAAGAGACAGAGA-AATAATT
129 ATTCAAAAGGAATTGAAAAGATAAGAG--AGAGATAATAATT
2720480 ATCAACTGAT
Statistics
Matches: 153, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
174 49 0.32
175 74 0.48
176 30 0.20
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (176 bp):
GCTGAAGTTGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAAT
TCCATCCTGCACTATCTTCAAAAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGAGAT
TCAAAAGGAATTGAAAAGATAAGAGAGAGATAATAATTCCCAATTC
Found at i:2720974 original size:966 final size:974
Alignment explanation
Indices: 2719371--2721236 Score: 2835
Period size: 966 Copynumber: 1.9 Consensus size: 974
2719361 CTCGTCCAAA
* *
2719371 TCATCCATGTATAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTAAATAAATCGATCATA
1 TCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTAAACAAATCGATCATA
* **
2719436 TCTGAAACTCCCGATATCAGATTGAGGTGATTCGAAAGGCATTGGAAAGAAAAGAGTTAGATGAA
66 TCTGAAACTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGAAAAGAGACAGATGAA
* * * * *
2719501 TAATTCCCAATTTATTTATGAAACCAAACATGTTTGTATCACATCTATAATCTTAAGACATTATG
131 TAATTACCAACTGATTTATGAAACCAAACATGTATGTATCACATCTAGAATCTTAAGACATTATG
* * *
2719566 ACTGATATTCTTGCATCTGATTAAAAGCGTTCAACGAACGTGACCCGCTAGCTATATACGATGAG
196 ACTGATATTCTTGAATCTGATTAAAAGCGTTCAACGAACATGACCCACTAGCTATATACGATGAG
* *
2719631 CTACGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTACCCTTAAGCTGATAAAGCT
261 CTACGAACCAACACTATAACAAAAGG-AATAAAGACTACAAGACTACCCTTAAGCCGATAAAGCT
* * *
2719696 CTAGAAGAGAACAAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATA
325 CTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATA
* *
2719761 CAGATGATCCCAAAAGTGCCTCTTTATAGTATTTCTAATCAGCATATGAAAAGACTCAAAAGATG
390 CAGATGATCCCAAAAGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATG
* * * * *
2719826 AAAAGTTCTCATCAATTTCGTAATAAAATGCAATTGTATGCTTTGTATTTCTTATCTTCAAGGTT
455 AAAAATTATCATCAATTTAGAAATAAAATGCAATTGAATGCTTTGTATTTCTTATCTTCAAGGTT
* *
2719891 GGTTGAATATTCTAGATCATTTTGGGAACGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAAT
520 GGTTGAATATTCTAGATCAATTTGGGAACGAATCTAGACAATTTAAAGCTTAATTTGGCCTTAAT
* *
2719956 TTCGTCCAAGGGTGGAAGACACTAGCTATTCCATGCGAAAAGTGTATTAATAAGTGAATTAAATC
585 TTCGACCAAGGGTGGAAGACACTAGCTATTCCATGCGAAAAGTGTATTAATAAGAGAATTAAATC
* *
2720021 ACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAAAAAGCAGC
650 ACCCTTCATTGCATACTCCCTTAAAGAATATGAACAACCCTTGACTTTAGATTATAAAAAGCAGC
*
2720086 TTTGAATGCCTTGAATGTGTGAATTAGGAGTCCTTTATGGATTCTAACTTGGCTGAAGTTGAAAA
715 TTTGAATGCCTTGAATGTGTGAATAAGGAGTCCTTTATGGATTCTAACTTGGCTGAAGTTGAAAA
*
2720151 GACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAATTCCATCCTGCACTA
780 GACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAACTCCATCCTGCACTA
*
2720216 TCTTCAAAAAATCGATCATATCTCAAGCTCCCGATATCGGATTGAGGAGATTCAAAAGGAATTGA
845 TCTTCAAAAAATCGATCATATCTCAAGCTACCGATATCGGATTGAGGAGATTCAAAAGGAATTGA
2720281 AAAGATAAGAGAGAGATAATAATTCCCAATTCGCTGAAGTTGAAAAGACACTCCGTTGTTCAATC
910 AAAGATAAGAGAGAGATAATAATTCCCAATTCGCTGAAGTTGAAAAGACACTCCGTTGTTCAATC
* * * * *
2720346 TCATCCATGCGTAAAATTCCCGTAACAAAATTCCTGCCTGCACTGTCTTCAACGAATCGATCATA
1 TCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTAAACAAATCGATCATA
* * * *
2720411 GT-T-AAGCTCCCGATATCGGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGACAGA-GA
66 -TCTGAAACTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGAAAAGAGACAGATG-
* * * * * * *
2720473 AATAATTATCAACTGATTTTTGGAGCCAAACATGTATGTATCGCATCTAGAGT-TTAAGACATTC
129 AATAATTACCAACTGATTTATGAAACCAAACATGTATGTATCACATCTAGAATCTTAAGACATTA
* * * *
2720537 TTACT-A-ATTCTTGAATCTGA-TGAAA-CTGTTCAACGAACATGACCCACTAGGTATATATGAT
194 TGACTGATATTCTTGAATCTGATTAAAAGC-GTTCAACGAACATGACCCACTAGCTATATACGAT
* *** * *
2720598 GAGCTAGGAACCATTGCTTTAACAAAAGG-ATAAAGACTACAAGACTA-TCTTGAAGCCGATAAA
258 GAGCTACGAACCAACACTATAACAAAAGGAATAAAGACTACAAGACTACCCTT-AAGCCGATAAA
* * *
2720661 GTTTTACAAGAGAACAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTAT
322 GCTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTAT
* *
2720726 ATACA-ATGATCTCAAAGGTGCCTATTTATAGTA-TTCTAAGCAGCATATGAAAATG-CTCAACA
387 ATACAGATGATCCCAAAAGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAA-GACTCAA-A
** *
2720788 A-ATGAAAAATTATCATCAATTTAGAAATAAAATGCCCTTGAATGCTTTGTCTTTCTTATCTT-A
450 AGATGAAAAATTATCATCAATTTAGAAATAAAATGCAATTGAATGCTTTGTATTTCTTATCTTCA
* * * *
2720851 AGGTTGGTTGAATATTCTAGATCAATTTGGGGATGAATCTATATAATTTAAAGCTTAATTTGGCC
515 AGGTTGGTTGAATATTCTAGATCAATTTGGGAACGAATCTAGACAATTTAAAGCTTAATTTGGCC
* * *
2720916 TTAATTTCGACCAAGGGGTGGAAGACTCTTGCTATTCCATGCGAAAAGTGTCTTAATAAGAGAAT
580 TTAATTTCGACCAA-GGGTGGAAGACACTAGCTATTCCATGCGAAAAGTGTATTAATAAGAGAAT
*
2720981 TAAATCACCCTTCATTGCATACTCCCTTAAAGAATATGAACAACCCTTGACTTTAGATTATAACA
644 TAAATCACCCTTCATTGCATACTCCCTTAAAGAATATGAACAACCCTTGACTTTAGATTATAAAA
*
2721046 ATCAGCTTTGAATGCCTTGAATGTGTGAATAAGGAGTCCTTTATGGATTCTAACTTGGCTGAAGT
709 AGCAGCTTTGAATGCCTTGAATGTGTGAATAAGGAGTCCTTTATGGATTCTAACTTGGCTGAAGT
*
2721111 TGAAAAGACACTCCCTTGGTTCAAACTCATTCATGCATAAAATTCCCGTAACAAAACTCCATCCT
774 TGAAAAGACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAACTCCATCCT
* *
2721176 GCACTATCTTCAATAAATCGATCATATCTCAAGCTATCGATATCGGATTGAGGAGATTCAA
839 GCACTATCTTCAAAAAATCGATCATATCTCAAGCTACCGATATCGGATTGAGGAGATTCAA
2721237 GGTTGGCTGA
Statistics
Matches: 804, Mismatches: 80, Indels: 23
0.89 0.09 0.03
Matches are distributed among these distances:
965 73 0.09
966 369 0.46
967 31 0.04
968 91 0.11
969 1 0.00
970 58 0.07
971 13 0.02
972 1 0.00
973 15 0.02
974 92 0.11
975 59 0.07
976 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (974 bp):
TCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTAAACAAATCGATCATA
TCTGAAACTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGAAAAGAGACAGATGAA
TAATTACCAACTGATTTATGAAACCAAACATGTATGTATCACATCTAGAATCTTAAGACATTATG
ACTGATATTCTTGAATCTGATTAAAAGCGTTCAACGAACATGACCCACTAGCTATATACGATGAG
CTACGAACCAACACTATAACAAAAGGAATAAAGACTACAAGACTACCCTTAAGCCGATAAAGCTC
TACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATAC
AGATGATCCCAAAAGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGA
AAAATTATCATCAATTTAGAAATAAAATGCAATTGAATGCTTTGTATTTCTTATCTTCAAGGTTG
GTTGAATATTCTAGATCAATTTGGGAACGAATCTAGACAATTTAAAGCTTAATTTGGCCTTAATT
TCGACCAAGGGTGGAAGACACTAGCTATTCCATGCGAAAAGTGTATTAATAAGAGAATTAAATCA
CCCTTCATTGCATACTCCCTTAAAGAATATGAACAACCCTTGACTTTAGATTATAAAAAGCAGCT
TTGAATGCCTTGAATGTGTGAATAAGGAGTCCTTTATGGATTCTAACTTGGCTGAAGTTGAAAAG
ACACTCCCTTGGTTCAAACTCATCCATGCATAAAATTCCCGTAACAAAACTCCATCCTGCACTAT
CTTCAAAAAATCGATCATATCTCAAGCTACCGATATCGGATTGAGGAGATTCAAAAGGAATTGAA
AAGATAAGAGAGAGATAATAATTCCCAATTCGCTGAAGTTGAAAAGACACTCCGTTGTTCAATC
Found at i:2724552 original size:791 final size:800
Alignment explanation
Indices: 2723029--2724806 Score: 2258
Period size: 791 Copynumber: 2.2 Consensus size: 800
2723019 AAATGAAGAC
* * * * *
2723029 GATAAAGTTCTACAA-AGAACAAA-AATTAAAGTGACCTCTCAAAAATGTTTTATATATTCAAAA
1 GATAAAGTTCTACAAGAGAA-AAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAA
*
2723092 TGTGTATATACAAATGATCCCAAAGGTGCTTCTTTATAGTATTTCTAAGCAGCATATGAAAAGAC
65 TATGTATATACAAATGATCCCAAAGGTGCTT-TTTATAGTATTTCTAAGCAGCATATG-AAAGAC
* * * **
2723157 TTAAAAGATGGAAAATTCTCATCATTTTAGCAATAAAATGCACTTGAATTCTTTGTCTTTCATAT
128 TCAAAAGAT-GAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGATTTGTCTTTCATAT
* *
2723222 CTTCAAGGTTGTCTGAAAATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGGAGCTTAATT
192 CTTCAAGGTTGGCTGAAAATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATT
*
2723287 TGGCCTTAATTTCGTCGAAGGGGTGGAAGACTCTTACTATTTCATGCTGAAAATTGTCTTAATAA
257 TGGCCTTAATTTCGTCGAAGGGGTGGAAGACTCTTACTATTCCATGCTGAAAATTGTCTTAATAA
* * * * * * *
2723352 GTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATTTGAACAACCCTTGACTTTAGATG
322 GTAAAATAAATCACCCTTCAATGCATGCTACCTTGAAGAATATGAACAACCCTTGACTTTAGATG
* *
2723417 ATAACAAATCAGCTTCGAATGCCTTGAATGGATGAATTAAGAGTCCATCAATGTCTTGTCACTTG
387 ATAACAAATCAGCTTCGAATGCCTTGAATGGATGAATTAAGAGTCCATCAATGGCTTGTAACTTG
* *
2723482 GATGAAATTGATAAGACTCTCAATTGTTTCAAACTGATTCAAATTATCCATGCATAAAATTCTCG
452 GATGAAATTGAAAAGACTCTCAATTGTTTCAAAC---TTC--A--ATCCATGCATAAAATTCCCG
* * * *
2723547 TAACAAAATTCATGCCTGCACTGTCTCCAATAAATCGATCCCATCTCAAGCCCCCGATATCGGAT
510 TAAAAAAATTCATGCCTACACTGTCTACAATAAATCGAT-CCATCTCAAGCCCCCGATATCGAAT
* * * * ** * * * * *
2723612 TGGGGTTATTCAAAAGGTATTTGAAAGATATGGGGTATATAAATAATTCATAATTGATTTCTGGA
574 TGGGGTGATTCAAAAGGCATTGGAAAGATATGAGACAGAGAAATAATACATAACTAATTTCTGGA
* * * * *
2723677 ACCAAACATGTCTGTATCGTATCTAGAGTTAGAAGAAATTTATACTAATATTATTGCATCTGATG
639 ACCAAACATGTATGTATCG-ATCCAGAGTTAGAAGAAATCTAGACTAATATTATTGAATCTGATG
* *
2723742 AAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCTAGGAACCAATGCTATAACAAA
703 AAACCGTTCAACGAACGTGACACACTAGGTATATATGATGAACTAGGAACCAATGCTATAACAAA
* *
2723807 AGGAAATGAAGACTATAAGACTAACTTCAAG-T
768 AGGAAATGAAGACTACAAGACTAACTGCAAGCT
*
2723839 AGATAAAGTTCTACAAGAGAAAAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAA
1 -GATAAAGTTCTACAAGAGAAAAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAA
2723904 TATGTATATACAAATGATCCCAAAGGTGCATTTTTATAGTA-TTC-AATGCAGCATATGAAAGAC
65 TATGTATATACAAATGATCCCAAAGGTGC-TTTTTATAGTATTTCTAA-GCAGCATATGAAAGAC
* * *
2723967 TCAAAAGA-GAAAATTTTTCATCAATTTAGTAATAAAATGCACTTGAATGATTTGTCTTTCTTAT
128 TCAAAAGATGAAAA-TTCTCATCAATTTAGAAATAAAATGCACTTGAATGATTTGTCTTTCATAT
* *
2724031 CTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGCG-ATGAATCTAGACAATTTGAAGCTTAAT
192 CTTCAAGGTTGGCTGAAAATTCTAGATCATTTTGG-GAATGAATCAAGACAATTTGAAGCTTAAT
* *
2724095 TTGGCCTTAATTTCGTTC-AAGTGGTGGAGGACTC-T-CTATTCCATGCTGAAAATTGTC-TAAT
256 TTGGCCTTAATTTCG-TCGAAGGGGTGGAAGACTCTTACTATTCCATGCTGAAAATTGTCTTAAT
* *
2724156 AAGTAAAATAAATCACCCTTCAATGCATGGTACCTTGAAGAATATGAAC-ACCCTTTACTTTAGA
320 AAGTAAAATAAATCACCCTTCAATGCATGCTACCTTGAAGAATATGAACAACCCTTGACTTTAGA
* * ** * * * *
2724220 TGATAAC-AATCATCTTTGAATGCCTTGAATGTCTGAATTAAGATTCCTTCTATGGCTTTTAAAC
385 TGATAACAAATCAGCTTCGAATGCCTTGAATGGATGAATTAAGAGTCCATCAATGGCTTGT-AAC
* *** ** *
2724284 TTGGCTGTTGTTGAAAAGACAATC-CCGTTG-TTCAAAC-TC-ATCCATGCGT-AAA-TCCCGTA
449 TTGGATGAAATTGAAAAGAC--TCTCAATTGTTTCAAACTTCAATCCATGCATAAAATTCCCGTA
* * *
2724343 AAAAAATTCCTGCCTACACTGTCTACAATAAATCGAT-CATACTCAAGCTCTCGATATCGAATTG
512 AAAAAATTCATGCCTACACTGTCTACAATAAATCGATCCAT-CTCAAGCCCCCGATATCGAATTG
* * * *
2724407 GGGTGATTCAAAAGGCATTGGAAATAT-TAGAGACAGAGAAATAATAC-TAACTAATTTTTTGAG
576 GGGTGATTCAAAAGGCATTGGAAAGATAT-GAGACAGAGAAATAATACATAACTAATTTCTGGAA
* * * *
2724470 TCAAACATGTATGTATAC-ATCCAGAGTTTGAAGACATCCT-GACTAATATTCTTGAATCTGATG
640 CCAAACATGTATGTAT-CGATCCAGAGTTAGAAGAAAT-CTAGACTAATATTATTGAATCTGATG
* * *
2724533 AATCCGTTCAACGAACGTGACACACTAGGTGTATATGATGAACTAGGAACCAATGCTTTAACAAA
703 AAACCGTTCAACGAACGTGACACACTAGGTATATATGATGAACTAGGAACCAATGCTATAACAAA
* * **
2724598 AGGAATTGAAGACTACAAGACTATCTGGTAGCT
768 AGGAAATGAAGACTACAAGACTAACTGCAAGCT
* *
2724631 GATAAAGTTCTACAAGAGAACAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTC-ATAT
1 GATAAAGTTCTACAAGAGAAAAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAAT
*
2724695 ATGTATATACAAATGATCCCAAAGGTGCTATTTATAGTATTTCTAAGCAGCATATGAAA-ACGCT
66 ATGTATATACAAATGATCCCAAAGGTGCTTTTTATAGTATTTCTAAGCAGCATATGAAAGA--CT
*
2724759 CAACAGATGAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATG
129 CAAAAGATGAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATG
2724807 CATATGATAA
Statistics
Matches: 849, Mismatches: 98, Indels: 60
0.84 0.10 0.06
Matches are distributed among these distances:
789 11 0.01
790 47 0.06
791 222 0.26
792 36 0.04
793 56 0.07
794 39 0.05
795 3 0.00
796 9 0.01
801 2 0.00
804 44 0.05
805 45 0.05
806 49 0.06
807 23 0.03
808 6 0.01
809 131 0.15
810 18 0.02
811 31 0.04
812 75 0.09
813 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (800 bp):
GATAAAGTTCTACAAGAGAAAAAGAATGAAAATAAACTCTCAAAGATGTTTTATATATTCAAAAT
ATGTATATACAAATGATCCCAAAGGTGCTTTTTATAGTATTTCTAAGCAGCATATGAAAGACTCA
AAAGATGAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGATTTGTCTTTCATATCTTC
AAGGTTGGCTGAAAATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGCTTAATTTGGC
CTTAATTTCGTCGAAGGGGTGGAAGACTCTTACTATTCCATGCTGAAAATTGTCTTAATAAGTAA
AATAAATCACCCTTCAATGCATGCTACCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAA
CAAATCAGCTTCGAATGCCTTGAATGGATGAATTAAGAGTCCATCAATGGCTTGTAACTTGGATG
AAATTGAAAAGACTCTCAATTGTTTCAAACTTCAATCCATGCATAAAATTCCCGTAAAAAAATTC
ATGCCTACACTGTCTACAATAAATCGATCCATCTCAAGCCCCCGATATCGAATTGGGGTGATTCA
AAAGGCATTGGAAAGATATGAGACAGAGAAATAATACATAACTAATTTCTGGAACCAAACATGTA
TGTATCGATCCAGAGTTAGAAGAAATCTAGACTAATATTATTGAATCTGATGAAACCGTTCAACG
AACGTGACACACTAGGTATATATGATGAACTAGGAACCAATGCTATAACAAAAGGAAATGAAGAC
TACAAGACTAACTGCAAGCT
Found at i:2726960 original size:771 final size:774
Alignment explanation
Indices: 2724816--2727612 Score: 3081
Period size: 771 Copynumber: 3.6 Consensus size: 774
2724806 GCATATGATA
* * *
2724816 AAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATCAGCGAATTAAATTACCCTTCATTGTAT
1 AAGACTC-TGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCAT
*
2724881 GCTCCCTTGAAGAATATGAATAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGA
65 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGA
* * **
2724946 A--TGTGATTTAAGAGTCTTTC-ATGGCTTGCTACTTGGCTGAAGTTGAAAAAGTCTCCCTTGGT
130 ATGTGTGAATTAAGAGTCCTTCTATGGCTT-CTACTTGGCTGAAGTTGAAAAACACTCCCTTGGT
* * * *
2725008 TTAAACTCATCCAAATCACCATGTATAAAATTCCCATAACAAAATTCCAGCATGTACTGTCTTAA
194 TCAAACTCATCC--AT--GC--G--TAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTAA
*
2725073 ATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGAA
251 ATAAATCGA--ATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGAT
* * * * * *
2725138 AAAAGTTAGATGAATAATTCCCAATTGATTTCTGAAACCAAACATGTTTGTATCACATCTAGAAT
314 AAGAG--AGA-GAATAATTCCCAA-TAATTTTTGGAACCAAACATGTATGTA--GCATCTAG-AT
* * * *
2725203 CTT-AAGACATTATGACTGATATTCTTGCATCTGATTAAAACCGTTCAACGAACTTGACCCTCTA
372 -TTGAAGACATTCTGAC---TATTCTTGCATCTGA-T-GAACCGTTCAACGAACGTGACCCACTA
* * ** *
2725267 GCTATATACGATGGGCTAGGAACCAACACTATAACAAAAGGAAATGAAGACTACAAGACTACCTT
431 GGTATAT--GATGAGCTAGGAACCAATGCT-TAACAAAAGGAAATGAAGACTACAAGACTAACTT
* * * * * *
2725332 GAAGCCGATAAAGCTCTAGAAGAGAACAATAATGAAAGCAACCTCTCAAAGATGTTTTATATCTT
493 GAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATG-TTTATATATT
* * * *
2725397 CAAAATGTGTATATACAAATGATCCAAAAGTGCCTCTTTATAGTATTTCTAATCAGCATATCAAA
557 C-AAATATGTATATACAAATGATCCAAAGGTG-CTCTTTATAGTATTTCTAAGCAGCATATGAAA
* * * *
2725462 AGACTCAAAAGATGAAAAATTCTCATCAATTTCGTAATAAAATGCAATTGTATGCTTTGTATTTC
620 AGACTCAAAAGATGAAAAATTCTCATCAA--TAGTAATAAAATGCACTTGAATGCTTTGTCTTTC
*
2725527 TTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGGGAATGAATCTAGACAATATGAAGCTT
683 TTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGG-ATGAA-CTAGACAAT-TGAAGCTT
2725592 AATTTGGCCTTAATTTCGTCCAAGGGGTGG
745 AATTTGGCCTTAATTTCGTCCAAGGGGTGG
* * *
2725622 AAGACACTAGCTATTCCATG-TGAAAAGTGTCTTAATAAGTGAATTAAATCACCCTTCATTGCAT
1 AAGACTCT-GCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCAT
* * * * * **
2725686 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAAAAAGCAGCTTTGAATTCCTTGA
65 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGA
* *
2725751 ATGTGTGAATTATGAGTCCTT-TATGGATTCTAACTTGGCTGAAGTTGAAAAGACACT-CCTTGG
130 ATGTGTGAATTAAGAGTCCTTCTATGGCTTCT-ACTTGGCTGAAGTTGAAAA-ACACTCCCTTGG
* * * * *
2725814 TTCAAACTCATCCATGC--ATAATTCCCGTAACAAAATTCCATCCTGCACTATCTTCAATAAATC
193 TTCAAACTCATCCATGCGTAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTAAATAAATC
* * * * * *
2725877 GATATATCTCAAGCTCTCGATATCGGATTGAGGAGATTCAAAAGGAATTGAAAAGATAAGAGATA
258 GA-ATATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGAGA
** * * *
2725942 TTATAATTCCCAATTATTATCTT-GAACCAAACATGTCTGTATAGCA-CCAGGAATTTGAAGACA
322 GAATAATTCCCAATAATT-T-TTGGAACCAAACATGTATG--TAGCATCTA-G-ATTTGAAGACA
*
2726005 TTTCTGACTGATAT-TCTGCATCTGATGAAACGTTCAACGAACGTGACCCACTAGGTATATGATG
381 -TTCTGACT-AT-TCT-TGCATCTGATGAACCGTTCAACGAACGTGACCCACTAGGTATATGATG
* * * **
2726069 AGCTAGGAACCAATGC-TATA-AAAAGGAAATGAAGACTATAATACTAACTTCAAGTGGATAAAG
442 AGCTAGGAACCAATGCTTA-ACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAG
2726132 TTCTACAAGAGAACAAGAATGAAAAACAAACTCTCAAAGATGTTT-TATATTCAAATATGTATAT
506 TTCTACAAGAGAACAAGAATG-AAAACAAACTCTCAAAGATGTTTATATATTCAAATATGTATAT
* *
2726196 ACAAATGATCCAAAGGTGCATTTTTATAGTATTTCAAAGCAGCATATGAAAAGACTCAAAAGATG
570 ACAAATGATCCAAAGGTGC-TCTTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATG
* * * *
2726261 AAAAATTTTCATCAAGAGTTATAAAATGCACTTGAATGATTTGTCTTTCTTATCTTCAAGGTTGG
634 AAAAATTCTCATCAATAGTAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGG
2726326 CTGAATA-TCTAGATCATTTTGGCGATGAA-TAGACAATTTGAAGCTTAATTTGGCCTTAATTTC
699 CTGAATATTCTAGATCATTTTGG-GATGAACTAGACAA-TTGAAGCTTAATTTGGCCTTAATTTC
* *
2726389 GTTCAAGTGGTGG
762 GTCCAAGGGGTGG
* ** * *
2726402 AGGACTCT-CTATTCCATGCTGAAAATTGTCTTAATAAGTAAAATAAATCA-CCTTCAATGCATG
1 AAGACTCTGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCATG
* * * * * *
2726465 GTACCTTGAAGAATATGAACAACCCTTTACTTTAGATGATAACAATCATCTTTGGATGCCTTG-A
66 CTCCCTTGAAGAATATGAACAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGAA
* * * * *
2726529 TGTCTGAATTAAGAGTCCTTCTATGGCTTTTAACTTGACTGCAGTTGAAAAGAC-CT-CGTT-GT
131 TGTGTGAATTAAGAGTCCTTCTATGGCTTCT-ACTTGGCTGAAGTTGAAAA-ACACTCCCTTGGT
* * * *
2726591 TC-AACTCATCCATGCGTAAAATCCCCGTAAAAAAATTCCTGCCTGCACTGTC-TACAATAAATC
194 TCAAACTCATCCATGCGTAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTA-AATAAATC
* * *
2726654 G-ATA-CTCAAGCTCTCGATATCAGATTGGGGGTGATTCAAAAGGCATTGGAAATATAAGAGACA
258 GAATATCTCAAGCTCCCGATATCAGATT-GAGGTGATTCAAAAGGCATTGGAAAGATAAGAG--A
* * **
2726717 GAGAAATAA-TGCTAACTAATTTTTGGAGTCAAACATGTATGTAGCATCTAG-TTTGAAGACATT
320 GAG-AATAATTCCCAA-TAATTTTTGGAACCAAACATGTATGTAGCATCTAGATTTGAAGACATT
* * *
2726780 CTAACTATTCTTGAATCTGATGAATCCGTTCAACGAACGTGACCCACTAGGTGTATGATGAGCTA
383 CTGACTATTCTTGCATCTGATGAA-CCGTTCAACGAACGTGACCCACTAGGTATATGATGAGCTA
* * *
2726845 GGAACCAATGCTTAACAAAAGGAAATGAAGACTACAAGACTATCTGGTAGCCGATAAAGTTCTAC
447 GGAACCAATGCTTAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTAC
*
2726910 AAGAGAACAAGAATGAAAATAAACTCTC-AAGATGTTTATATATTCAAATATGTATATAC-AATG
512 AAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTATATATTCAAATATGTATATACAAATG
* *
2726973 ATCCCAAGGTGC-CTTTATAGTATTTCTAAGCAGCATATGAAAACG-CTCAACAGATGAAAAATT
577 ATCCAAAGGTGCTCTTTATAGTATTTCTAAGCAGCATATGAAAA-GACTCAAAAGATGAAAAATT
* * *
2727036 CTCATCATTTAGAAATAAAATGCACTTGAATGCTTTGTC--TCTTATCTTCTAGGTTGGCTGAAT
641 CTCATCA-ATAGTAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAAT
* * * *
2727099 ATTCTAGATCAATTGGGGATGAATCTAGATAA-T---GCTTAA-TTGGCCTTAATTTCGACCAAG
705 ATTCTAGATCATTTTGGGATGAA-CTAGACAATTGAAGCTTAATTTGGCCTTAATTTCGTCCAAG
2727159 GGGTGG
769 GGGTGG
*
2727165 AAGA-TCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCC--CATTGTAT
1 AAGACTC-TGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCAT
*
2727227 GCTCCC-TGAAGAATATGAATAACCCTTGACTTTAAATGATAAC-ATCATCTTTGAAGGCCTTGA
65 GCTCCCTTGAAGAATATGAACAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGA
* * * *
2727290 ATGTGTG-ATTCAAGAGTCTTTCAATGGCTGCTACTT-GCTGAAGTTG-AAAACTCTCCCTTGGT
130 ATGTGTGAATT-AAGAGTCCTTCTATGGCTTCTACTTGGCTGAAGTTGAAAAACACTCCCTTGGT
*
2727352 TCAAACTCATCCAAATCATCCATGCATAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTA
194 TC-AA---A--C---TCATCCATGCGTAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTA
*
2727417 AATAAATCG-ATATCTCAAGCTTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGG-AAGAA
250 AATAAATCGAATATCTCAAGC-TCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGAT
* * * * * *
2727480 AAGAG-GTAGATGATAA-TCCCAATTGATTTCTGAAACCAAAAATGTTTGTATCACATCTAGATC
314 AAGAGAG-AGA--ATAATTCCCAA-TAATTTTTGGAACCAAACATGTATGTA--GCATCTAGAT-
* * *
2727543 TT-AAGACATTATGACTGATATTCTTGCATCTGATTAAAAACCGTTCAACGAACGTGACCCGCTA
372 TTGAAGACATTCTGAC---TATTCTTGCATCTGA-T--GAACCGTTCAACGAACGTGACCCACTA
*
2727607 GCTATA
431 GGTATA
2727613 GTATTTCTAA
Statistics
Matches: 1707, Mismatches: 207, Indels: 182
0.81 0.10 0.09
Matches are distributed among these distances:
758 2 0.00
759 5 0.00
760 11 0.01
761 28 0.02
762 59 0.03
763 39 0.02
764 45 0.03
765 2 0.00
766 1 0.00
767 31 0.02
768 68 0.04
769 35 0.02
770 65 0.04
771 148 0.09
772 102 0.06
773 36 0.02
774 23 0.01
775 50 0.03
776 23 0.01
777 83 0.05
778 140 0.08
779 30 0.02
780 49 0.03
781 1 0.00
782 20 0.01
783 50 0.03
784 1 0.00
785 83 0.05
786 6 0.00
787 60 0.04
788 19 0.01
789 17 0.01
791 30 0.02
792 12 0.01
793 48 0.03
794 9 0.01
795 2 0.00
796 52 0.03
797 41 0.02
803 1 0.00
805 100 0.06
806 19 0.01
807 58 0.03
808 3 0.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31
Consensus pattern (774 bp):
AAGACTCTGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCATG
CTCCCTTGAAGAATATGAACAACCCTTGACTTTAAATGATAACAATCATCTTTGAAGGCCTTGAA
TGTGTGAATTAAGAGTCCTTCTATGGCTTCTACTTGGCTGAAGTTGAAAAACACTCCCTTGGTTC
AAACTCATCCATGCGTAAAATTCCCATAACAAAATTCCAGCCTGCACTGTCTTAAATAAATCGAA
TATCTCAAGCTCCCGATATCAGATTGAGGTGATTCAAAAGGCATTGGAAAGATAAGAGAGAGAAT
AATTCCCAATAATTTTTGGAACCAAACATGTATGTAGCATCTAGATTTGAAGACATTCTGACTAT
TCTTGCATCTGATGAACCGTTCAACGAACGTGACCCACTAGGTATATGATGAGCTAGGAACCAAT
GCTTAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAACA
AGAATGAAAACAAACTCTCAAAGATGTTTATATATTCAAATATGTATATACAAATGATCCAAAGG
TGCTCTTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAAGATGAAAAATTCTCATCAATA
GTAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATCA
TTTTGGGATGAACTAGACAATTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGG
Found at i:2729372 original size:803 final size:800
Alignment explanation
Indices: 2727609--2729972 Score: 3090
Period size: 803 Copynumber: 2.9 Consensus size: 800
2727599 ACCCGCTAGC
* *
2727609 TATAGTATTTCTAAGCAACATAT-GAAGGACTCAAAAGATGAAAAATTCCCATCAATTTAGCAAT
1 TATAGTATTTCTAAGCAGCATATAAAAGG-CTCAAAAGATGAAAAATTCCCATCAATTTAGCAAT
*
2727673 AAAATGCAATTGTATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTG
65 AAAATGCAATTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTG
* * * * * *
2727738 GGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTGT
130 GGGATGAATCTAGAAAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCT
* * *
2727803 TGCTATTTCACGCTGAAAATTGTCTTAATCAGTGAAATAAATCACCTTTTATTGCATGCTCCCTT
195 T-CTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTT
* * * *
2727868 GAAGAATATTAACAACCCTTGACTTTAGATGATAACAAATCAGCTCTGAATCCCTTGAATGTCTA
259 GAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATCAGCTTTGAATGCCTTGAATGTATA
*
2727933 AATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAAC
323 AATTAAGAGTCCTTCAATGGCTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAAC
* * * *
2727998 TGATCCAAATCATCCATGCGTAAAATTCCCGTAACAAAATTCATGCATGTACTGTCTTCAATAAA
388 TCATCC-AA--ATCCATGCATAAAATT-CCGTAACAAAATTCATGCATGCACTGTCTTCAAAAAA
* * * *
2728063 TCGATCCTATCTCAAGCCCCCGATATCGGATTGGGGTGATTCAAAAGGCATTCGAAAGATAAGAG
449 TCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAG
* * * * * *
2728128 ATATAGAAATAATTCTTAATTGATTTATGGAACCAAACATGTCTCG-ATCGTATCCAAAGTTTGA
514 --ATAGAAATAATTCTCAATTGATTTCT-GAACCAAACAAGTCT-GTATCGCATCTAGAGTTTGA
* * **
2728192 AGAAATTAAT-ACTAATATTATTGCATCTGATGAAATTGTTCAACGAACGTGACCCACTAGGTAT
575 AGACATT-ATGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTAT
*
2728256 ATATGATGAGCTAGG-AACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTCAA-
639 ATATGATGAGCTAGGAAAC-AAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAG
2728319 GCGGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATAATTTCAA
703 GC-GATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATAATTTCAA
* * * *
2728384 TGTGTATATACAAATTATCCGAAAGGTGCCTATT
767 TATGTATATACAAATGATCCCAAAGGTACCTATT
* * * *
2728418 TAGAGTATTTATAAGCAGCATATGAAAAGGCTCAAAAGATGAAAAGTTCCCATCAATTTAGCTAT
1 TATAGTATTTCTAAGCAGCATAT-AAAAGGCTCAAAAGATGAAAAATTCCCATCAATTTAGCAAT
* * * * *
2728483 AAAAAGCATTTGAATGCTTTGTCTTTCTTAACTTCAAGGTTGGTTGCATATTCTAGCTCATTTTG
65 AAAATGCAATTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTG
* *
2728548 GGGATGAATCTAGATAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGTGGTGGAAGACTCT
130 GGGATGAATCTAGAAAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCT
* * *
2728613 T-TATTTCATGCTGAAAATTGTGTGAATAAGTGAATTAAATCACATTTTATTGCATGCTCCCTTG
195 TCTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTG
* * *
2728677 AAGAATATGAACAACCCTTAACTTTAGATGATAACAACTCAGCTTTGAATGCCTTGAACGTATTA
260 AAGAATATGAACAACCCTTGACTTTAGATGATAACAA-TCAGCTTTGAATGCCTTGAATGTATAA
*
2728742 ATTAAGAGTCCTTCAATGGATTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACT
324 ATTAAGAGTCCTTCAATGGCTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACT
* * *
2728807 CATCCAAATCCATGCATAAAATTCCGTAACAAAATTCATGCATGGACTCTCTTCAAAAAAGCGAT
389 CATCCAAATCCATGCATAAAATTCCGTAACAAAATTCATGCATGCACTGTCTTCAAAAAATCGAT
* * *
2728872 CATA-CTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAACGCACTGGAAAGATAAGAGACAGA
454 CATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGA
* * * * *
2728936 AATAATTCTCAACTGATTTCTAGAGCCAAACAAGTATGTATCGCATCTAGAGTTTGATGGCATTA
519 AATAATTCTCAATTGATTTCT-GAACCAAACAAGTCTGTATCGCATCTAGAGTTTGAAGACATTA
* *
2729001 TGACTAATATTCTTGAATCTGATGAAACCGTTCAATGAACGTGACCCACTAGGTATATATGATGA
583 TGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGA
* *
2729066 GCTAGGAAACAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGGCGATAAAGT
648 GCTAGGAAACAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGGCGATAAAGT
* *
2729131 TCTACAAGAAAACAAGAATGAAAACAAACTCTCAAAGATGTTTTAT-TTATTCAAAATATGTATA
713 TCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATAAT-TTC--AATATGTATA
*
2729195 TACAAATGATCCCAAAGGTATCTATT
775 TACAAATGATCCCAAAGGTACCTATT
* * * *
2729221 TATAGTATTTCTAAGCAGCATATAAAAACGCTCAACAGATGAAAAATTCTCATCAATTTAGAAAT
1 TATAGTATTTCTAAGCAGCATAT-AAAAGGCTCAAAAGATGAAAAATTCCCATCAATTTAGCAAT
* * * *
2729286 AAAATGCACTTGAATGCTTTGTATTTCTTATCTTAAAGGTTGGCTGAATATTCTAGATCATTTTG
65 AAAATGCAATTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTG
* *
2729351 GGGATGAATCTATAAAATTTGAAGCTTAATTT---C--GA---C--T-AAGGGGTGGAAGACTCT
130 GGGATGAATCTAGAAAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCT
* * * *
2729405 TGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTGCATGCTCCCTT
195 T-CTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTT
* * * * *
2729470 GAAGAATATGAATAACCCTTGACTTTAGATGATAACAATCATCTTTGAAGGCCTTGAATGTGTGA
259 GAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTATAA
* ** * * * *
2729535 TTTAAGAGTTATTCAATGGCTTTTTACTTGG-CTGAAGTTGA-AAAACTCTCCCTTGGTTCAAAC
324 ATTAAGAGTCCTTCAATGGCTTGTCACTTGGAC-GAAATTGAGAAGACTCTCCCTTGGTTCAAAC
* * *
2729598 TCATCCAAATCATCTATGCATATAATTCCATAACAAAATTCCA-GCCTGCACTGTCTT-AAATAA
388 TCATCCAAATC--C-ATGCATAAAATTCCGTAACAAAATT-CATGCATGCACTGTCTTCAAA-AA
* * * *
2729661 ATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGACTCAAAAGGCATTGGAAATAAAAGA
448 ATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGA
* * * *
2729726 GATAGATGAA-AATTCCCTATTGATTTCTGAAACCAAACATA-TCTGTA-CGACATCTAGAATAT
513 GATAGA--AATAATTCTCAATTGATTTCTG-AACCAAACA-AGTCTGTATCG-CATCTAGAGTTT
* * * * *
2729788 GAAGACATTCTGACTGATATTCTTGCATCTGATTAAAACCGTTCAACGAACGTGACCCGCTAGCT
573 GAAGACATTATGACTAATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGTGACCCACTAGGT
* * *
2729853 ATATACGATGAGCTAGGAACCAACA-CTATAACAAAAGGAAATGAAGACTACAAGACTACCTTGA
637 ATATATGATGAGCTAGGAAACAA-AGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGA
* * * * *
2729917 AGCCGATAAAGTTCTAGAAGAGAACGAGAATGAAACCAACCTCTCAAAGATGTTTT
701 AGGCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTT
2729973 CTATATTGTC
Statistics
Matches: 1372, Mismatches: 157, Indels: 63
0.86 0.10 0.04
Matches are distributed among these distances:
792 50 0.04
793 55 0.04
794 95 0.07
795 46 0.03
796 58 0.04
797 65 0.05
798 141 0.10
800 5 0.00
801 214 0.16
802 5 0.00
803 224 0.16
804 41 0.03
805 15 0.01
807 4 0.00
808 179 0.13
809 20 0.01
810 151 0.11
811 4 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (800 bp):
TATAGTATTTCTAAGCAGCATATAAAAGGCTCAAAAGATGAAAAATTCCCATCAATTTAGCAATA
AAATGCAATTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGTTGAATATTCTAGATCATTTTGG
GGATGAATCTAGAAAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAAGACTCTT
CTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGA
AGAATATGAACAACCCTTGACTTTAGATGATAACAATCAGCTTTGAATGCCTTGAATGTATAAAT
TAAGAGTCCTTCAATGGCTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTTGGTTCAAACTCA
TCCAAATCCATGCATAAAATTCCGTAACAAAATTCATGCATGCACTGTCTTCAAAAAATCGATCA
TATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGATAAGAGATAGAAA
TAATTCTCAATTGATTTCTGAACCAAACAAGTCTGTATCGCATCTAGAGTTTGAAGACATTATGA
CTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAGGTATATATGATGAGCT
AGGAAACAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGGCGATAAAGTTCT
ACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATAATTTCAATATGTATATACAAA
TGATCCCAAAGGTACCTATT
Found at i:2736297 original size:810 final size:810
Alignment explanation
Indices: 2733057--2739371 Score: 8539
Period size: 808 Copynumber: 7.8 Consensus size: 810
2733047 TTCAACGAGG
* * * * * * *
2733057 ATGAAAGCAACCTCTCAAACATGTTTCATATATTCAAAATGTGTATACACATATGATCCCAAACG
1 ATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGG
* * * *
2733122 TGCCTCTTTATAGTATTTCTATGCAACATATGAAAAGACTCAAAAGATGAAATTCTCATCAATTT
66 TGCCTATTTATAGTATTTATAAGCAGCATATGAAAAGACTCAAAAGATGAAATTCTCATCAATTT
* ** * * *
2733187 AGCAATAAAATGCACTTTAATGCTTCATTTTTCATATCTTCAAGGTTGTCTGAATATTCTAGATC
131 AGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATC
* * * *
2733252 ATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAA
196 ATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAA
* * *
2733317 GACTGTTGCTATTTCATGCTGAAAATTGTCTTAATCAGTGAAATAAAT-ACCTTTTATTGCATGA
261 GACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAAATAAATCACCTTTTATTGCATGC
* * *
2733381 TCCCTTGAA-CATATTAACAACCCTTGACTTTAGATGAT-ACAAATCAGCTTTGAATGCCTTTAA
326 TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAA
*
2733444 TGTCTGAATTAAGAGTCCTTCAATGGC-TGTCACTTGGATGAAATTGAGAAGACTCT--CTTGGT
391 TGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGT
* * *
2733506 TCAAACTGATCC-AATCATCCATGCGTAAAATTCCCGTAACAAAATTCATGCATGTG-CTGTCTT
456 TCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTG-GACTGTCTT
* *
2733569 CAATAAATCGATCCTATCTCAAGCCCCCGATAT-AGGATTGGGGTGATTCAAAAGGCATTCGAAA
520 CAATAAATCGATCATATCTCAAGCCCCCGATATCA-GATTGGGGTGATTCAAAAGGCATTGGAAA
* *
2733633 GATAAGAGATATAGAAATAATTCTTAATGGATTTCTGGAACCAAACATGTCTGTATCGTATCCAG
584 GATAAGAGATAGAGAAATAATTCTTAATGGATTTCTGGAACCAAACATGTCTGTATCGCATCCAG
* *
2733698 AGTTTGAAGAAATTAAT-ACTAATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCAC
649 AGTTTGAAGACATT-ATGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCAC
*
2733762 TAGGTATATATGATGAGCTAGGAACAAAATCTATAACAAAAGGAAATGAAGACTACAAGACTAAC
713 TAGGTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAAC
*
2733827 TTCAAGCGGATAAAG-T-TAC-A-AGAACAAGA
778 TTGAAGCGGATAAAGTTCTACAAGAGAACAAGA
*
2733856 ATGAAAACAAACTCTCAAAGATGTTTTATA-ATTTC--AATGTGTATATACAAATGATCCGAAAG
1 ATGAAAACAAACTCTCAAAGATGTTTTATATA-TTCAAAATGTGTATATACAAATGATCCCAAAG
* * * *
2733918 GTGCCTATTTAGAGTATTTATAAGCAGCATATGAAAAGCCTCAAAAGATAAAAAATTCCCATCAA
65 GTGCCTATTTATAGTATTTATAAGCAGCATATGAAAAGACTCAAAAGAT--GAAATTCTCATCAA
* * *
2733983 TTTAGCAATAAAAAT-CACTTGAATGCTTTGGCTTTCTTAACTTCAAGGTTGACTGAATATTCTA
128 TTTAGCAAT-AAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTA
* * * * *
2734047 GCTCATTTTGGGGATGAATCTAGATAATTTGAAGCTTAATTTTGCCTTAATTTCGTTCATGTGGT
192 GATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGT
* * * *
2734112 GGAAGACTCTT--TATTTCATGCTGAAAATTGTGTGAATAAGTGAATTAAATCACATTTTATTGC
257 GGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAAATAAATCACCTTTTATTGC
* * *
2734175 ATGCTCCCTTGAAGAATATGAAAAACCTTTAACTTTAGATGATAACAAATCAGCTTTGAATGCCT
322 ATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCT
* * * *
2734240 TGAACGTGTGAATTAAGAGTCCTTCAATGGCTTGCCACTTGGACGAAATTGAGAAGACTCTCTCT
387 TGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCT
* * *
2734305 TGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCACGTAACAAAATTCAAGCCTGGACTCT
452 TGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGGACTGT
* * *
2734370 CTTCAATAAAGCGATCATA-CTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCACTGGA
517 CTTCAATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGA
* * *
2734434 AAGATAAGAGACAGAGAAATAATTCTCAACT-GATTTCTGGAGA-CAAACATGTATGTATCGCAT
582 AAGATAAGAGATAGAGAAATAATTCTTAA-TGGATTTCTGGA-ACCAAACATGTCTGTATCGCAT
* * *
2734497 CCAGAGTTTGATGACATTATGACTAATATTCTTGAATCTGATGAAACCGTTCAATGAACGTGACC
645 CCAGAGTTTGAAGACATTATGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACC
* * *
2734562 CACTAGGTATATATGATGAGCTATGAA-ACAATGCTATAACAAAAGGAAATAAAGACTACAAGAC
710 CACTAGGTATATATGATGAGCTAGGAACA-AAAGCTATAACAAAAGGAAATGAAGACTACAAGAC
* *
2734626 TATCTTGAAGCCGATAAAGTTCTACAAGAGAACAAGA
774 TAACTTGAAGCGGATAAAGTTCTACAAGAGAACAAGA
* *
2734663 ATGAAAACAAACTCTCAAAGATGTTTTATTTATTCAAAATGTGCATATACAAATGATCCCAAAGG
1 ATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGG
* *
2734728 TGTCTATTTATAGTATTT-TAAGCAGCATATGAAAACG-CTCAACAGATGAAAAATTCTCATCAA
66 TGCCTATTTATAGTATTTATAAGCAGCATATGAAAA-GACTCAAAAGATG--AAATTCTCATCAA
*
2734791 TTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAG
128 TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAG
* * *
2734856 ATCATTTTGGGGATGAATCTATAAAATTTGAAGCTTAATTTGGCCTTAATTTCG-ACTAAGGGGT
193 ATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTTC-AAGGGGT
* * * * * * *
2734920 GGAAGACTCCTGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAAACACCCTTCATTGC
257 GGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAAATAAATCACCTTTTATTGC
* * * *
2734985 ATGCTCCTTTGAAGAATATGAATAACCCTTGACTTTAGATGATAAC-AATCATCTTTGAAGGCCT
322 ATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCT
* * * * * * *
2735049 TGAATGTGTTATTTAAGAGTCATTCAATGGATTGTTACTTGGCTGAAGTTGA-AA-ACTCT-CCT
387 TGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCT
* * * *
2735111 TGGTTCAAACTCATCCAAATCATCTATG-ATAAAAAATT-CCATAACAAAATTCCA-ACCTGCAC
452 TGGTTCAAACTCATCCAAATCATCCATGCAT--AAAATTCCCGTAACAAAATT-CATGCCTGGAC
* * *
2735173 TGTCTTAAATAAATCGATCATATCTCAAGCTCCCCGATATCAGATTGAGGTGACTC-AAAGGCAT
514 TGTCTTCAATAAATCGATCATATCTCAAGC-CCCCGATATCAGATTGGGGTGATTCAAAAGGCAT
* * ** *
2735237 TGGAAAGA-AAGAGATAGATGAAA-AATTCCCT-ATTGATTTCTAAAACCAAACATATCTGTAT-
578 TGGAAAGATAAGAGATAGA-GAAATAATT-CTTAATGGATTTCTGGAACCAAACATGTCTGTATC
* * * * * * *
2735298 GACATCTAGAATATGAAGACATTCTGACTGATATTCTTGCATCTGATTAAAACCATTCAACGAAC
641 G-CATCCAGAGTTTGAAGACATTATGACTAATATTCTTGCATCTGA-TGAAACCGTTCAACGAAC
* * * *
2735363 GTGACCCGCTAGCTATATACGATGAGCTAGGAACCAACA-CTATAACAAAAGGAAATGAAGACTA
704 GTGACCCACTAGGTATATATGATGAGCTAGGAA-CAAAAGCTATAACAAAAGGAAATGAAGACTA
* * * *
2735427 CAAGACTACCTTGAAGCCGATAAAGTTCTAGAAGAGAACGAGA
768 CAAGACTAACTTGAAGCGGATAAAGTTCTACAAGAGAACAAGA
* * * * *
2735470 ATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATACACATATGATCCCAAACG
1 ATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGG
* * *
2735535 TGCCTCTTTATAGTATTTCTAAGCAACATATGAAAAGACTCAAAAGATGAAATTCTCATCAATTT
66 TGCCTATTTATAGTATTTATAAGCAGCATATGAAAAGACTCAAAAGATGAAATTCTCATCAATTT
* * * * * * *
2735600 AGCAATAAAATGCACTTTAATGCTTTATTTTTCATATCTTTAAGGTTGTCTAAATATTCTAGATC
131 AGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATC
* * * *
2735665 ATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTGCAAGGGGTGGAA
196 ATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAA
* * *
2735730 GACTGTTGCTATTTCATGTTGAAAATTGTCTTAATCAGTGAAATAAATCACCTTTTATTGCATGC
261 GACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAAATAAATCACCTTTTATTGCATGC
* * *
2735795 TCCCTTGAACAATATTAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTTAA
326 TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAA
*
2735860 TGTCTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGT
391 TGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGT
* * *
2735925 TCAAACTGATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCATGTACTGTCTTC
456 TCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGGACTGTCTTC
* * * *
2735990 AATAAATCGATCCTATCTCAAGCCCCCGATATCGGATTGGGGTGATTGAAAAGGCATTCGAAAGA
521 AATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGA
* *
2736055 TAAGAGATATAGAAATAATTCTTAATGGATTTCTGGAACCAAACATGTCTGTATCGTATCCAGAG
586 TAAGAGATAGAGAAATAATTCTTAATGGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAG
* *
2736120 TTTGAAGAAATTAAT-ACTAATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTA
651 TTTGAAGACATT-ATGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTA
2736184 GGTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTT
715 GGTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTT
*
2736249 CAAGCGGATAAAGTTCTACAAGAGAACAAGA
780 GAAGCGGATAAAGTTCTACAAGAGAACAAGA
*
2736280 ATGAAAACAAACTCTCAAAGATGTTTTATA-ATTTC--AATGTGTATATACAAATGATCCGAAAG
1 ATGAAAACAAACTCTCAAAGATGTTTTATATA-TTCAAAATGTGTATATACAAATGATCCCAAAG
* * * *
2736342 GTGCCTATTTAGAGTATTTATAAGCAGCATATGAAAAGCCTCAAAAGATAAAAAATTCCCATCAA
65 GTGCCTATTTATAGTATTTATAAGCAGCATATGAAAAGACTCAAAAGAT--GAAATTCTCATCAA
* *
2736407 TTTAGCAATAAAAAT-CACTTGAATGCTTTGGCTTTCTTAACTTCAAGGTTGGCTGAATATTCTA
128 TTTAGCAAT-AAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTA
* * * * *
2736471 GCTCATTTTGGGGATGAATCTAGATAATTTGAAGCTTAATTTTGCCTTAATTTCGTTCATGTGGT
192 GATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGT
* * * *
2736536 GGAAGACTCTT--TATTTCATGCTGAAAATTATGTGAATAAGT-AAATTAAATCACATTTTATTG
257 GGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAAA-TAAATCACCTTTTATTG
* * *
2736598 CATGCTCCCTTGAAGAATATGAAAAACCTTTAACTTTAGATGATAACAAATCAGCTTTGAATGCC
321 CATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCC
* *
2736663 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGACGAAATTGAGAAGACTCTCTC
386 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCC
* * *
2736728 TTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCACGTAACAAAATTCAAGCCTGGACTC
451 TTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGGACTG
* * *
2736793 TCTTCAATAAAGCGATCATA-CTCAAGCTCCCGATATCAGATTGGGGTGATTC-AAAGGCACTGG
516 TCTTCAATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGG
* *
2736856 AAAGAT-A-AG--AGAGAAATAATTCTCAACT-GATTTCTGGAGA-CAAACATGTATGTATCGCA
581 AAAGATAAGAGATAGAGAAATAATTCTTAA-TGGATTTCTGGA-ACCAAACATGTCTGTATCGCA
* * * * *
2736915 TCCAGAGTTTGATGACATTATGACTAATATTCTTGAATATGATGAAACCGTTCAATGAATGTGAC
644 TCCAGAGTTTGAAGACATTATGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGAC
* *
2736980 CCACTAGGTATATATGATGAGCTATGAA-ACAATGCTATAACAAAAGGAAATGAAGACTACAAGA
709 CCACTAGGTATATATGATGAGCTAGGAACA-AAAGCTATAACAAAAGGAAATGAAGACTACAAGA
*
2737044 CTATCTTGAAGCCGG-TAAAGTTCTACAAGAGAACAAGA
773 CTAACTTGAAG-CGGATAAAGTTCTACAAGAGAACAAGA
* *
2737082 ATGAAAACAAACTCTCAAAGATGTTTTATTTATTCAAAATGTGTATATATAAATGATCCCAAAGG
1 ATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGG
* *
2737147 TGTCTATTTATAGTATTT-TAAGCAGCATATGAAAACG-CTCAACAGATGAAAATTCTCATCAAT
66 TGCCTATTTATAGTATTTATAAGCAGCATATGAAAA-GACTCAAAAGATG-AAATTCTCATCAA-
2737210 TTTA--AATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAG
128 TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAG
* * *
2737273 ATCATTTTGGGGATGAATCTATAAAATTTGAAGCTTAATTTGGCCTTAATTTCG-ACTAAGGGGT
193 ATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTTC-AAGGGGT
* * * * * * *
2737337 GGAAGACTCCTGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAAACACCCTTCATTGC
257 GGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAAATAAATCACCTTTTATTGC
* * *
2737402 ATGCTCCCTTGAAGAATATGAATAACCCTTGACTTTAGATGATAAC-AATCATCTTTGAAGGCCT
322 ATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCT
* * * * * * * *
2737466 TGAATGTGTTATTTAAGAGTCATTCAATGGATTGTTACTTGGCTGAAGTTGA-AAAACTCTCCCT
387 TGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCT
* * *
2737530 TGGTTCAAACTCATCCAAATCATCTATGCATAAAATT-CCATAACAAAATTCCAT-CCTGCACTG
452 TGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATT-CATGCCTGGACTG
* * *
2737593 TCTTAAATAAATCGATCATATCTCAAGCTCCCCGATATCAGATTGAGGTGACTCAAAAGGCATTG
516 TCTTCAATAAATCGATCATATCTCAAGC-CCCCGATATCAGATTGGGGTGATTCAAAAGGCATTG
* * * ** *
2737658 GAAAGAAAAGAGATAGATGAAA-AATTCCCT-ATTGATTTCTAAAACCAAACATATCTGTA-CGA
580 GAAAGATAAGAGATAGA-GAAATAATT-CTTAATGGATTTCTGGAACCAAACATGTCTGTATCG-
** * * * * * * *
2737720 CATATATAATATGAAGACATTCTGACTGATATTCTTGTATCTGATTAAAACCGTTCAACGAACGT
642 CATCCAGAGTTTGAAGACATTATGACTAATATTCTTGCATCTGA-TGAAACCGTTCAACGAACGT
* *
2737785 GACCCGCTAGCTATAT-TCGATGAGCTAGGAACCAATAA--TATAACAAAAGGAAATGAAGACTA
706 GACCCACTAGGTATATAT-GATGAGCTAGGAA-CAA-AAGCTATAACAAAAGGAAATGAAGACTA
* * * * *
2737847 CAAGACTACCTTGAAGCTGATAAAGTTCTAGAAGACAACGAGA
768 CAAGACTAACTTGAAGCGGATAAAGTTCTACAAGAGAACAAGA
* * * * * *
2737890 ATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAGAATGTGTATACACATATGATCCCAAACG
1 ATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGG
* * *
2737955 TGCCTCTTTATAGTATTTCTAAGCAACATATGAAAAGACTCAAAAGATGAAATTCTCATCAATTT
66 TGCCTATTTATAGTATTTATAAGCAGCATATGAAAAGACTCAAAAGATGAAATTCTCATCAATTT
* * * * * *
2738020 AGCAATAAAATGCACTTTAATGCTTTATTTTTCATATCTTCAAGGTTGTCTAAATATTCTAGATC
131 AGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATC
* * * *
2738085 ATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAA
196 ATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAA
* *
2738150 GACTGTTGCTATTTCATGCTGAAAATTGTCTTAATCAGTGAAATAAATCACC-TTTATTGCATGC
261 GACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAAATAAATCACCTTTTATTGCATGC
* * *
2738214 TCCCTTGAA-CATATTAACAACCCTTGACTTTAGATGATAAC-AATCAGCTTTGAATGCCTTTAA
326 TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAA
*
2738277 TGTCTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGT
391 TGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGT
* * * * * *
2738342 TCAAACTGATCCAAATCATCCATGCGTAAAATTCCTGTAACAAAATTCATGCATGTATTGTCTTC
456 TCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGGACTGTCTTC
* * *
2738407 AATAAATCGATCCTATCTCAAGCCCCCGATATCGGATTGGGGTGATTCAAAAGGCATTCGAAAGA
521 AATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGA
* * * *
2738472 TAAGAGATATAGAAATAATTCTTAATGGATTTCTAGAACCAAACATGTCTGTATCGTAACCAGAG
586 TAAGAGATAGAGAAATAATTCTTAATGGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAG
* *
2738537 TTTGAAGAAATTCAT-ACTAATATTCTTGCATCTGATGAAACTGTTCAACGAACGTGACCCACTA
651 TTTGAAGACATT-ATGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTA
*
2738601 GGTATATATGATGAGCTAGGAACAAAAGCTATAATAAAAGGAAATGAAGACTACAAGACTAACTT
715 GGTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTT
*
2738666 CAAGCGGATAAAGTTCTACAAGAGAACAAGA
780 GAAGCGGATAAAGTTCTACAAGAGAACAAGA
*
2738697 ATGAAAACAAACTCTCAAAGATGTTTTATA-ATTTC--AATGTGTATATACAAATGATCCGAAAG
1 ATGAAAACAAACTCTCAAAGATGTTTTATATA-TTCAAAATGTGTATATACAAATGATCCCAAAG
* * *
2738759 GTGCCTATTTAGAGTATTTATAAGCAGCATATGAAAAGGCTCAAAAGATGAAAATTTCCCATCAA
65 GTGCCTATTTATAGTATTTATAAGCAGCATATGAAAAGACTCAAAAGATG-AAA-TTCTCATCAA
* * *
2738824 TTTAGCAATAAAAAGCACTTGAATGCTCTGTCTTTCTTAACTTCAAGGTTGGCTGAATATTCTAG
128 TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAG
* * * *
2738889 CTCATTTTGGGGATGCATCTAGATAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGTGGTG
193 ATCATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTG
* * * * *
2738954 GAAGACTCTT--TATTTCATTCTGAAAATTGTGTGAATAAGTGAATTAAATCACATTTTATTGCA
258 GAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAAATAAATCACCTTTTATTGCA
*
2739017 TGCTCCCTTGAAGAATATGAACAACCCTTAACTTTAGATGATAACAAATCAGCTTTGAATGCCTT
323 TGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCTT
** *
2739082 GAGCGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGACGAAATTGAGAAGACTCTCCCTT
388 GAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTT
* *
2739147 GGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCAGTAACAAAATTCATGCCTGGACTCTC
453 GGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGGACTGTC
* ** * * *
2739212 TTCAATAAAGCGATCATA-CTCAAGTTCCCGATATCATATTGGGGAGATTCAAAAGGCACTGGAA
518 TTCAATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAA
* * ** * ** *
2739276 AGATAAGAGACAGAGAAATAATTCTCAACAGATTTCTGGAGCCAAACATGAATGTATCGCATCTA
583 AGATAAGAGATAGAGAAATAATTCTTAATGGATTTCTGGAACCAAACATGTCTGTATCGCATCCA
*
2739341 GAGTTTGATGACATTATGACTAATATTCTTG
648 GAGTTTGAAGACATTATGACTAATATTCTTG
2739372 AATCAATGCT
Statistics
Matches: 4821, Mismatches: 572, Indels: 238
0.86 0.10 0.04
Matches are distributed among these distances:
797 101 0.02
798 24 0.00
799 181 0.04
800 96 0.02
801 201 0.04
802 318 0.07
803 376 0.08
804 110 0.02
805 118 0.02
806 410 0.09
807 939 0.19
808 1042 0.22
809 372 0.08
810 450 0.09
811 81 0.02
812 2 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (810 bp):
ATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGG
TGCCTATTTATAGTATTTATAAGCAGCATATGAAAAGACTCAAAAGATGAAATTCTCATCAATTT
AGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTAGATC
ATTTTGGGGATGAATCTAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAGGGGTGGAA
GACTCTTGCTATTTCATGCTGAAAATTGTCTTAATAAGTGAAATAAATCACCTTTTATTGCATGC
TCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTGAA
TGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAGAAGACTCTCCCTTGGT
TCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGGACTGTCTTC
AATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAAGA
TAAGAGATAGAGAAATAATTCTTAATGGATTTCTGGAACCAAACATGTCTGTATCGCATCCAGAG
TTTGAAGACATTATGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCACTAG
GTATATATGATGAGCTAGGAACAAAAGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTG
AAGCGGATAAAGTTCTACAAGAGAACAAGA
Found at i:2741010 original size:810 final size:811
Alignment explanation
Indices: 2739379--2741730 Score: 3118
Period size: 808 Copynumber: 2.9 Consensus size: 811
2739369 TTGAATCAAT
* *
2739379 GCTATAACAAAAGGAAATGAAGACTACAAAACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
1 GCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAAC
* * * * *
2739444 AAGAATGAAAACAAACTCTAAAAGATGTTTTATTTATTTAAAATATATATATACAAATGATCCCA
66 AAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCA
** * *
2739509 AAGGTGTATATTTATAGTATTTCTAAGCAGCATATGAAAACGCTCAACAGATGAAAAATTCTCAT
131 AAGGTGCCTATTTATAGTATTTCTAAGCAACATATGAAAA-GCTCAAAAGATG-AAAATTCTCAT
* * *
2739574 CAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATATTAAAGGTTGGCTGAATATTC
194 CAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTC
* *
2739639 TAGATCATTTTGGGGATGAATCTATAAAATTTGAAGCTTAATTT---C--GA---C-T-AAGGGG
259 TAGATCATTTTGGGGATGAATCTAGAAAATTTGAAGCTTAATTTGGCCTTAATTTCGTCAAGGGG
* * * * *
2739694 TGGAAGACTCTTGTTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTCATTA
324 TGGAAGACTCTTG-TATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTG
* * * *
2739759 CATGCTCCCTTGAAGAAT-TTGAATAACCCTTGACATTAGATGATAAC-AATCATCTTTGAAGGC
388 CATGCTCCCTTGAAGAATATT-AACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGC
* * * * *
2739822 CTTGAATGTGTGATTTAAGAGTCATTCAATGGCTTGTTACTTGGCTGAAGTTGAAAA-ACTCTCC
452 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCC
* *
2739886 CTTGGTTCAAACTCATCCAAATCATCTATGCATAAAATT-CCATAACAAAATTCCA-GCCTGCAC
517 CTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATT-CATGCCTGCAC
* * * *
2739949 TGTCTTAAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGACTCAAAAGGAATT
581 TGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATT
* * * * *
2740014 GGAAAGAAAAGAGATAGATG-AA-AATTCCCT-ATTGATTTCTGAAACCAAACATATCTGTA-CG
646 GGAAAGATAAGAGATAGA-GAAATAATT-CTTAATAGATTTCTGGAACCAAACATGTCTGTATCG
* * * **
2740075 ACATCTAGAATATGAAGACATTC-TGACTGATATTCTTGCATCTGATTAAAACTGTTCAGTGAAC
709 A-A-CTAGAGTTTGAAGACATTCATGACTAATATTCTTGCATCTGATTAAAACTGTTCAACGAAC
*
2740139 GTGACCCGCTAGCTATATACGATGAGCTAGGAACCAATAA
772 GTGACCCACTAGCTATATACGATGAGCTAGGAACCAATAA
* * * *
2740179 --TATAACAAAAGGAAATGAAGACTACAAGACTACCTTGAAGCTGATAAAGTTCTAGAAGACAAC
1 GCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAAC
* * * * *
2740242 GAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATACACATATGATCCCA
66 AAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCA
* *
2740307 AACGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAAGACTCAAAAGATG-AAATTCTCATC
131 AAGGTGCCTATTTATAGTATTTCTAAGCAACATATGAAAAG-CTCAAAAGATGAAAATTCTCATC
* * * * * *
2740371 AATTTAGCAATAAAATGCACTTTAATGCTTTATTTTTCATATCTTCAAGGTTGTCTAAATATTCT
195 AATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCT
* * * *
2740436 AGATCATTTTGGGAATAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGGGG
260 AGATCATTTTGGGGATGAATCTAGAAAATTTGAAGCTTAATTTGGCCTTAATTTCGT-CAAGGGG
* * * *
2740501 TGGAAGACTGTTGCTATTTAATGCTGAAAATTGTCTTAATCAGTGAAATAAATCACCTTTTATTG
324 TGGAAGACTCTTG-TATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTG
*
2740566 CATGCTCCCTTGAACAATATTAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCC
388 CATGCTCCCTTGAAGAATATTAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCC
* *
2740631 TTTAATGTCTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCC
453 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCC
* * * *
2740696 TTGGTTCAAACTGATCCAAATCATCCATGCGTAAAATTCCCGTAACAAAATTCATGCATGTACTG
518 TTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGCACTG
* * * *
2740761 TCTTCAATAAATCGATCCTATCTCAAGCCCCCGATATCGGATTGGGGTGATTCAAAAGGCATTCG
583 TCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGG
* *
2740826 AAAGATAAGAGATATAGAAATAATTCTTAATGGATTTCTGGAACCAAACATGTCTGTATCGTAAC
648 AAAGATAAGAGATAGAGAAATAATTCTTAATAGATTTCTGGAACCAAACATGTCTGTATCG-AAC
* * *
2740891 CAGAGTTTGAAGAAATTCAT-ACTAATATTCTTGCATCTGA-TGAAACTGTTCAACGAACGTGAC
712 TAGAGTTTGAAGACATTCATGACTAATATTCTTGCATCTGATTAAAACTGTTCAACGAACGTGAC
* *
2740954 CCACTAGGTATATATGATGAGCTAGGAA-CAA-AA
777 CCACTAGCTATATACGATGAGCTAGGAACCAATAA
* * *
2740987 GCTATAACAAAAGGAATTGAAGACTACAAGACTAACTTCAAGCGGATAAAGTTCTACAAGAGAAC
1 GCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAAC
* * *
2741052 AATAATGAAAACAAACTCTCAAAGATGTTTTATA-ATTTC--AATGTGTATATACAAATTATCCG
66 AAGAATGAAAACAAACTCTCAAAGATGTTTTATATA-TTCAAAATGTGTATATACAAATGATCCC
* * *
2741114 AAAGGTGCCTATTTAGAGTATTTATAAGCAGA-ATATGAAAAGGCTCAAAAGATGAAAAATTCCC
130 AAAGGTGCCTATTTATAGTATTTCTAAGCA-ACATATGAAAA-GCTCAAAAGATG-AAAATTCTC
* *
2741178 ATCAATTTAGCAATAAAAAGCACTTGAATGCTTTGTCTTTCTTAACTTCAAGGTTGGCTGAATAT
192 ATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATAT
* *
2741243 TCTAGCTCATTTTGGGGATGAATCTAGATAATTTGAAGCTTAATTTGGCCTTAATTTCGTTCAAG
257 TCTAGATCATTTTGGGGATGAATCTAGAAAATTTGAAGCTTAATTTGGCCTTAATTTCG-TCAAG
* * * * *
2741308 TGGTGGAAGACTCTT-TATTTCATGCTGAAAATTATGTGAATAAGTGAATTAAATCACATTTTAT
321 GGGTGGAAGACTCTTGTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTAT
* *
2741372 TGCATGCTCCCTTGAAGAATATGAACAACCCTTAACTTTAGATGATAACAAATCAGCTTTGAATG
386 TGCATGCTCCCTTGAAGAATATTAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATG
* *
2741437 CCTTGAGA-GTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGACGAAATTGAGAAGACTCT
451 CCTTGA-ATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCT
* * * *
2741501 CCCTTGGTTCAAACTCATCCAAATTATCCATGCATAAAATTCCAGTAATAAAATTCATGCCTGGA
515 CCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGCA
* * * * *
2741566 CTCTCTTCAATAAAGCGATCATA-CTCAAGTTCCCGATATCAGATTTGGGTGATTCAAAAGGCAC
580 CTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCAT
* * * * **
2741630 TGGAAAGATAAGAGACAGAGAAATAATTCTCAACAGATTTCTGGAGCCAAACATGAATGTATCGC
645 TGGAAAGATAAGAGATAGAGAAATAATTCTTAATAGATTTCTGGAACCAAACATGTCTGTATCG-
* *
2741695 ATCTAGAGTTTGATGACATT-ATGACTAATATTCTTG
709 AACTAGAGTTTGAAGACATTCATGACTAATATTCTTG
2741731 AATCAATGCT
Statistics
Matches: 1353, Mismatches: 166, Indels: 59
0.86 0.11 0.04
Matches are distributed among these distances:
796 105 0.08
797 1 0.00
798 158 0.12
799 1 0.00
801 1 0.00
804 1 0.00
805 1 0.00
806 2 0.00
807 222 0.16
808 373 0.28
809 53 0.04
810 365 0.27
811 65 0.05
812 4 0.00
813 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (811 bp):
GCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTGAAGCCGATAAAGTTCTACAAGAGAAC
AAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCA
AAGGTGCCTATTTATAGTATTTCTAAGCAACATATGAAAAGCTCAAAAGATGAAAATTCTCATCA
ATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCTA
GATCATTTTGGGGATGAATCTAGAAAATTTGAAGCTTAATTTGGCCTTAATTTCGTCAAGGGGTG
GAAGACTCTTGTATTTCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCTTTTATTGCAT
GCTCCCTTGAAGAATATTAACAACCCTTGACTTTAGATGATAACAAATCAGCTTTGAATGCCTTG
AATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAATTGAAAAGACTCTCCCTTG
GTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCATGCCTGCACTGTCT
TCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGCATTGGAAA
GATAAGAGATAGAGAAATAATTCTTAATAGATTTCTGGAACCAAACATGTCTGTATCGAACTAGA
GTTTGAAGACATTCATGACTAATATTCTTGCATCTGATTAAAACTGTTCAACGAACGTGACCCAC
TAGCTATATACGATGAGCTAGGAACCAATAA
Found at i:2743379 original size:810 final size:810
Alignment explanation
Indices: 2741738--2744853 Score: 4033
Period size: 810 Copynumber: 3.9 Consensus size: 810
2741728 TTGAATCAAT
*
2741738 GCTATAACAAAAGGAAATGAAGACTACAAAACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
1 GCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
* * * * *
2741803 AAGAATGAAAACAAACTCTAAAAGGTGTTTTATTTATTCAAAATATATATATACAAATGATCCCA
66 AAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCA
* ** * *
2741868 AATGTGTATTTTTATAGTATTTCTAAGCAGCATATGAAAACGCTCAACAGATGAAAAATTCTCAT
131 AAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAACGCTCAAAAGATG-AAAATTCTCAT
* *
2741933 CAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATATTAAAGGTTGGCTGAATATTC
195 CAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTC
* *
2741998 TAGATCATTTTGGGGATGAATCTATAAAATTTGAAGCTTAATTT---C--GA---C-T--AAGGG
260 TAGATCATTTTGGGGATAAATCTAGAAAATTTGAAGCTTAATTTGGCCTTGATTTCGTCCAAGGG
* * *
2742052 GTGGAAGACTATTGCTATTCCATGCTGAAAATTGTCTTAATAAGCGAATTAAATCACCCTTAATT
325 GTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTTATT
* * * *
2742117 GCATGCTCCCTTGAAGAATTTGAATAACCCTTGACATTAGATGATAACAATCATCTTTGAAGGCC
390 GCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCC
* * * * * *
2742182 TTGAATGTGTGATTTAAGAGTCATTCAATGGCTTGTTACTTGGCTGAAGTTGA-AAAACTCTCCT
455 TTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAGAAGACTCTCCC
* * *
2742246 TTGGTTCAAACTTATCCAAATTATCTATGCATAAAATT-CCATAACAAAATTCCA-GCCTGCACT
520 TTGGTTCAAAC-TATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCATGCCTGCACT
* * * * *
2742309 GTCTTAAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGACTCAAAAGGCATTG
584 GTCTTCAATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCATTC
* * * *
2742374 GAAAGAAAAGAGATAGATG-AA-AATTCCCT-ATTGATTTCTGAAACCAAACATATCTGTA-CGA
649 GAAAGATAAGAGATAGA-GAAATAATT-CTTAATTGATTTCTGGAACCAAACATGTCTGTATCG-
* * * * * * *
2742435 CATCTAGAATATGAAGACATTCTGACTGATATTCTTGTATCTGATTAAAACCGTTCAACGAACGT
711 CATCCAGAGTTTGAAGACATTATGACTAATATTCTTGAATCTGA-TGAAACCGTTCAACGAACGT
* * *
2742500 GACCCGCTAGCTATATACGATGAGCTAGGAACCAATAA
775 GACCCACTAGGTATATATGATGAGCTAGGAA-CAA-AA
* * * *
2742538 --TATAACGAAAGGAAATGAAGACTACAAGACTACCTTGAAGCCGATAAAGTTCTAGAAGACAAC
1 GCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
* * * *
2742601 GAGAATGAAAGCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACATATGATCCCA
66 AAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCA
* *
2742666 AAGGTGCCTCTTTATAGTATTTCTAAGCAACATATGAAAA-GACTCAAAAGATG-AAATTCTCAT
131 AAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAACG-CTCAAAAGATGAAAATTCTCAT
* * * * * * *
2742729 CAATTTAGCAATAAAATGAACTTTAATGCTTTATTTTTCATATCTTCAAGGTTGTCTGAATATTC
195 CAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTC
* * *
2742794 TAGATCATTTT-GGGAGTAAATCAAGACAATTTGAAGCTTAATTTGGCCTTAATTTCGTCCAAGG
260 TAGATCATTTTGGGGA-TAAATCTAGAAAATTTGAAGCTTAATTTGGCCTTGATTTCGTCCAAGG
* * * * *
2742858 GGTGGAAGACTGTTGCTATTTCATGCTGAAAATTGTCTTAATCAGTGAAATAAATCACCTTTTAT
324 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTTAT
*
2742923 TGCATGCTCCCTTGAAGAATATTAACAACCCTTGACTTTAGATGATAACAAATCAGT-TTTGAAT
389 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATCA-TCTTTGAAT
* *
2742987 GCCTTGAATGTCTAAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAGAAGACTCT
452 GCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAGAAGACTCT
* ** * * * *
2743052 CCCGTATTTCAAACTGATCCAAATCATCCATGCGTAAAATTCTCGTAACAAAATT-CATGCTTGT
517 CCCTTGGTTCAAACT-ATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCATGCCTGC
* * * *
2743116 ACTTTCTTCAATAAATCGATCCTATCTGAAGCCCCCGATATCGGATTGGGGTGATTCAAAAGGCA
581 ACTGTCTTCAATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCA
* *
2743181 TTCGAAAGATAAGAGATATAGAAATAATTCTTAATTGATTTATGGAACCAAACATGTCTGTATCG
646 TTCGAAAGATAAGAGATAGAGAAATAATTCTTAATTGATTTCTGGAACCAAACATGTCTGTATCG
* * * **
2743246 TATCCAGAGTTTGAAGAAATTAAT-ACTAATATTCTTGCATCTGATGAAATTGTTCAACGAACGT
711 CATCCAGAGTTTGAAGACATT-ATGACTAATATTCTTGAATCTGATGAAACCGTTCAACGAACGT
2743310 GACCCACTAGGTATATATGATGAGCTAGGAACAAAA
775 GACCCACTAGGTATATATGATGAGCTAGGAACAAAA
* * * * *
2743346 GCTATAACAAAAGGAAATGAAGACTACAAGACTAACTTCAAGCGGATAAAGTTCTATAGGAGAAC
1 GCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
* * *
2743411 AAGAATGAAAGCAAACTCTCAAAGATGTTTTATA-ATTTC--AATGTGTATATACAAATTATCCG
66 AAGAATGAAAACAAACTCTCAAAGATGTTTTATATA-TTCAAAATGTGTATATACAAATGATCCC
* * *
2743473 AAAGGTGCCTATTTAGAGTATTTATAAGCAGCATATGAAAA-GTCTCAAAAGATGAAAAATAC-C
130 AAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAACG-CTCAAAAGATG-AAAATTCTC
** * * * * * *
2743536 AATCAATTTAGCTATAAAAAGCATTTGAATGCTCTGTCTTTCTTAACTTCAAGGTTGGTTGCATA
193 -ATCAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATA
* * * * * * *
2743601 TTCTAGCTCATGTTGGAGATGAATCTAGATAATTTGAAGCTTAATTTGGCCTTTATTTCGTTCAA
257 TTCTAGATCATTTTGGGGATAAATCTAGAAAATTTGAAGCTTAATTTGGCCTTGATTTCGTCCAA
* * * * **
2743666 GTGGTGGAAGACTCTT--TATTTCATGCTGAAAATTGTGTGAATAAGTGAATTAAATCACATTTT
322 GGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTT
** * *
2743729 ATTATATGCTCCCTTGAAGAATATGAACAACCCTTAACTTTAGATGATAACAAATCAGCTTTGAA
387 ATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-AATCATCTTTGAA
* * * *
2743794 TGCCTTGAACGTATGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGACGAAATTGAGAAGACTC
451 TGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAGAAGACTC
*
2743859 TCCCTTGGTTCAAACTCATCCAAATCATCCATGTATAAAATTCCCGTAACAAAATT-CATGCCTG
516 TCCCTTGGTTCAAACT-ATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCATGCCTG
* * * *
2743923 GACTCTCTTCAATAAAGCGATCATA-CTCAAGCTCCCGATATCAGATTGGGGTGATTCAAAAGGC
580 CACTGTCTTCAATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGC
* * * * * *
2743987 ACTGGAAAGATAAGAGACT-GAGAAATAATTCTCAACTGATTTCTGGAGCCAAACATGTATGTAT
645 ATTCGAAAGATAAGAGA-TAGAGAAATAATTCTTAATTGATTTCTGGAACCAAACATGTCTGTAT
* * **
2744051 CGCATCCAGAGTTTGATGACATTATGACTAATATTCTTGAATCTGATGAAACCGTTTAATAAACG
709 CGCATCCAGAGTTTGAAGACATTATGACTAATATTCTTGAATCTGATGAAACCGTTCAACGAACG
*
2744116 TGACCCACTAGGTATATATGATGAGCTAGGAA-ACAAT
774 TGACCCACTAGGTATATATGATGAGCTAGGAACA-AAA
*
2744153 GCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTAAAGCCGATAAAGTTCTACAAGAGAAC
1 GCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
* * *
2744218 AAGAATGAAAACAAACTATCAAAGTTGTTTTATTTATTCAAAATGTGTATATACAAATGATCCCA
66 AAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCA
* *
2744283 AAGGTGTCTATTTATAGTATTTCTAAGCAGCATATGAAAACGCTCAACAGATGAAAAATTCTCAT
131 AAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAACGCTCAAAAGATG-AAAATTCTCAT
*
2744348 AAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTC
195 CAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTC
* * *
2744413 TAGATCATTTTGGGGATGAAA-CTATAAAATTTGAAGCTTAATTTGGCCTTGATTTCGACTAAGG
260 TAGATCATTTTGGGGAT-AAATCTAGAAAATTTGAAGCTTAATTTGGCCTTGATTTCGTCCAAGG
** * *
2744477 GGTGGAAGACTCTAACTATTCCATGCTGAAAATTGTCTTAATAAGAGAATTAAATCACCCTTCAT
324 GGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTTAT
* * *
2744542 TGCATACTCCCTTGAAGAATATGAACAACCCTTGATTTTAGATTATAACAATCATCTTTGAATGC
389 TGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGC
* * * * * * * *
2744607 CTTGAATGTGTGAATTAAGAGTCCTTCTATGGCTTCTAACTAGGCTAAAGTTGAAAAGACACTCC
454 CTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAGAAGACTCTCC
* *
2744672 CTTGGTTCAAAC--T-C-ATTC-T-C--GCATAAAATTCCCGTAACAAAATTCCAT-CCTCCACT
519 CTTGGTTCAAACTATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCATGCCTGCACT
* *
2744728 GTCTTCAATAAATCGATCCTATCTCTAA-CCCGCGATATCAGATTGGGGTGATTCAAAAGGCATT
584 GTCTTCAATAAATCGATCATATCTC-AAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCATT
*
2744792 CGAAAGATAAGAGATATAGAAATAATTCTTAATTGATTTCTGGAACCAAACATGTCTGTATC
648 CGAAAGATAAGAGATAGAGAAATAATTCTTAATTGATTTCTGGAACCAAACATGTCTGTATC
2744854 ATATCTGTAT
Statistics
Matches: 2008, Mismatches: 261, Indels: 92
0.85 0.11 0.04
Matches are distributed among these distances:
795 4 0.00
796 101 0.05
797 1 0.00
798 159 0.08
799 1 0.00
801 49 0.02
802 93 0.05
803 3 0.00
804 2 0.00
805 4 0.00
806 4 0.00
807 378 0.19
808 373 0.19
809 245 0.12
810 436 0.22
811 152 0.08
812 3 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (810 bp):
GCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTGAAGCCGATAAAGTTCTACAAGAGAAC
AAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCA
AAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAAACGCTCAAAAGATGAAAATTCTCATC
AATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATCTTCAAGGTTGGCTGAATATTCT
AGATCATTTTGGGGATAAATCTAGAAAATTTGAAGCTTAATTTGGCCTTGATTTCGTCCAAGGGG
TGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAATTAAATCACCCTTTATTG
CATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACAATCATCTTTGAATGCCT
TGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAAGTTGAGAAGACTCTCCCT
TGGTTCAAACTATCCAAATCATCCATGCATAAAATTCCCGTAACAAAATTCCATGCCTGCACTGT
CTTCAATAAATCGATCATATCTCAAGCCCCCGATATCAGATTGGGGTGATTCAAAAGGCATTCGA
AAGATAAGAGATAGAGAAATAATTCTTAATTGATTTCTGGAACCAAACATGTCTGTATCGCATCC
AGAGTTTGAAGACATTATGACTAATATTCTTGAATCTGATGAAACCGTTCAACGAACGTGACCCA
CTAGGTATATATGATGAGCTAGGAACAAAA
Found at i:2748727 original size:810 final size:810
Alignment explanation
Indices: 2745377--2749872 Score: 5715
Period size: 810 Copynumber: 5.6 Consensus size: 810
2745367 TCTTGAATCT
* * *
2745377 GATGAAATCATTCTCATCAATTTAGAAATAAAATGCACTTGAATG--TTGTCTTTCTTATATTCA
1 GATGAAA-AATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATGTTCA
* *
2745440 AGGTTGGCTGAATATTAC-AGATCAATTTGGGGATGAATCTAGATAATTTGAAGCTTAATTTGGC
65 AGGTTGGCTGAATATT-CTAGATCAATTTGGGAATGAATCTAGACAATTTGAAGCTTAATTTGGC
* * *
2745504 CTTAATTTCGTCTAAGGGGTGGAAGACTCTTGCTATACCATGCTGAAAATTGTCTTAATAAGTGA
129 CTTAATTTCATCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGA
* * *
2745569 ATTAAATCACCCTTCATTGCAAGATCCCTTGAAGAATATGAACAACCCTTGAATTTAGATGATAA
194 ATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAA
* * * * * * *
2745634 CAATAATCTTTGAAGGCCTTGCATGTGTGATTTAAGAGTCATTCAATGGCTTGTTACTTGGCTGT
259 CAATAAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTAACTTGGCTGA
* *
2745699 AGTTGAAAAACGCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATT-CCGATAACA
324 AGTTGAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCG-TAACA
* * * *
2745763 AAATTCCA-GCCTCCACTGTCTTAAATAAATCGATCATATCTCAAGCTCCTGATATCAGATTGAG
388 AAATT-CATGCATGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAG
* * * *
2745827 GTGATTCAAAAGGCATTGGAAAAAAAAGAGATAGATG-AATAATTCCCAATTGATTTCTGAAACC
452 GTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAAATAATTCCCAATTGATTTATGGAACC
* * * * * * *
2745891 AAACATGTCTGTGTCACAT-CTAGAATCTGAAGACATTCTGACTAATATTCTTGCATCTGATTAA
517 AAACATGTATGTATCGCATAC-AGAGTTTGAAGACATTCTAACTAATATTCTTGCATCTGA-TGA
* * * ** * *
2745955 AATCATTCAACGAACGTGACCCGCTAGCTATATACGATGCA-CTAGGAACCAACACAATAATAAA
580 AATCGTTCAACGAACGTGACCCACTAGCTATATATGATG-AGCTAGGAACCAATGCTATAACAAA
* * *
2746019 AGGAAATGAAGACTACAAGACTA-CCTCGAAGCCGATAAGGTTGTACAAGAGAATAAGAATGAAA
644 AGGAAATGAAGACTACAAGACTATCC-CGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAA
*
2746083 GCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAGATGATCCCAAAGGTGCCTC
708 GCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTC
2746148 TTTATAGTATTTCTAAGCAGCATATGAAAAGACTCAAAA
773 TTTATAGTATTTCTAAGCAGCATATGAAAAG-CTCAAAA
* * * *
2746187 GATGAAAAATTATCATCAATTTAGCAATAAAATGTAATTGTATGCTTTGTCTTTCTTATGTTCAA
1 GATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATGTTCAA
* * * *
2746252 GGTTGGTTGAATATTCTAGATCATTTTGGGAATGAATCTAGGCAATTTGAAGCTTAATTTGGCTT
66 GGTTGGCTGAATATTCTAGATCAATTTGGGAATGAATCTAGACAATTTGAAGCTTAATTTGGCCT
* * * *
2746317 TAATTTCGTCAAAGGGGTGGAAGACTCTAGCTATTCCATGC-GAAAATTGTCTTGATAAGTGAAT
131 TAATTTCATCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAAT
* *
2746381 TAAATCACCGTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAACA
196 TAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACA
* * ** * *
2746446 ATCAGCTTTGAATGCCTTGAATGTGTGACTTAAGAGTCCTTTTATGGCTTCTAACTTTGCTGAAG
261 ATAAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTAACTTGGCTGAAG
*
2746511 TTGAAAAGAC-CTCCCTTGGTTCAAA--C-T-----T-ATCCATGCATAAAATTCCCGTAAAAAA
326 TTG-AAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAA
* * * * *
2746566 ATTCCAT-CGTGCACTCTCTTCAATAAATCGATCATATCTCAAGCTCCCGCTATCGGATTAAGGT
390 ATT-CATGCATGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGT
* * * *
2746630 GATTCAAAAGGCGTTGAAAAGATAAGAGATAGATGAAA-AATTCCCAATTGATTTGTTGAACCAA
454 GATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAAATAATTCCCAATTGATTTATGGAACCAA
* * * * * * * * *
2746694 ACATGTATGTATAGAATA-AGGAATTTAAAGATATTCTGACTGATATTGTTGCATCGGATGAAAT
519 ACATGTATGTATCGCATACA-GAGTTTGAAGACATTCTAACTAATATTCTTGCATCTGATGAAAT
* * * * **
2746758 TGTTCAATGAACGTGACCCTCTAGCTATATATGATGAACTAGGAACCAATGCTATAACAAAATTA
583 CGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGA
* ** *
2746823 AATGAAGACTACAAAACTATCTTGAAGACGATAAAGTTCTACAA-AGAACAAGAAAT-AAAGCAA
648 AATGAAGACTACAAGACTATCCCGAAGCCGATAAAGTTCTACAAGAGAACAAG-AATGAAAGCAA
*
2746886 CCTCTCAAAGATGTTTTATATATTCAAAATATGTATATACAAATGATCCCAAAGGTGCCTCTTTA
712 CCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTA
2746951 TAGTATTTCTAAGCAGCATATGAAAAGACTCAAAA
777 TAGTATTTCTAAGCAGCATATGAAAAG-CTCAAAA
** * * * * * * *
2746986 TTTGGAAAATTCTCAT-AATTTTAGCAATAAAATGCATTTGAATGCTTTTTCGTTCATATTTTTA
1 GATGAAAAATTCTCATCAA-TTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATGTTCA
* * * * *
2747050 AGGTTGTCTGAATATTCTAGATCATTTTGGAAATGAATCAAGACAATTTGAAGCATAATTTGGCC
65 AGGTTGGCTGAATATTCTAGATCAATTTGGGAATGAATCTAGACAATTTGAAGCTTAATTTGGCC
* * * * * *
2747115 TTAATTTCGTCCAATGGGTGGAAGACTGTTGCTATTTCATGCT-AAAATTTATCTTAATAAGTCA
130 TTAATTTCATCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAA-TTGTCTTAATAAGTGA
* * * *
2747179 ATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAAACCTTGACTTTAGAAGATAA
194 ATTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAA
* * * *
2747244 CAAATAAGCTTTGAATGCCTTGAATGTCTGAATTAAGACTCCTTCAATGGCTTGTCACTTGGATG
259 C-AATAAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTAACTTGGCTG
* * * * *
2747309 AAATTGAGAAGACTCTCCCTTGGTTCAAACTGATCGAAATCTTCCATGCGTAAAATTCCCGTAAC
323 AAGTTGA-AAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAAC
* * * * * * *
2747374 AAAATTCATGCGTGCAATGTCTTCAATAAATCAATCCTATATCAAGCCCCCGATATCGGATTGAG
387 AAAATTCATGCATGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAG
* * ** *
2747439 GTGATTCAAAAGGCATTCGAAAGATAAGAGATATA-GAAATAATTCTTAATTGATTTCTGGAACC
452 GTGATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAAATAATTCCCAATTGATTTATGGAACC
* * *
2747503 AAACATGTCTGTATCGCATCCAGAGTTTGAGGACATTC-ATACTAATATTCTTGCATCTGATG-A
517 AAACATGTATGTATCGCATACAGAGTTTGAAGACATTCTA-ACTAATATTCTTGCATCTGATGAA
* * * * *
2747566 ATCCGTTCAAAGAACGTGACCCAATAGGTATATATGATGAGGTAGGAACCAATGCTATAATAAAA
581 AT-CGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAACAAAA
* * * *
2747631 GGAAATGAAGACTATAAGACTAAGT-TC-AAGCCGATAAAGTTCTACAAGAGAAGAATAATGAAA
645 GGAAATGAAGACTACAAGACT-A-TCCCGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAA
* * * * * * * *
2747694 TCAAACTTTCAAAGATGATTTATAAATTCAATATGTGTATATACAAATGATCCGAAAGGTGCCTA
708 GCAACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTC
* * *
2747759 TTTATAGTATTTATAAGTAGCATATGAATAGGCTCAAAA
773 TTTATAGTATTTCTAAGCAGCATATGAA-AAGCTCAAAA
* * * * *
2747798 GATGAAAAATTCCCATCAATTTACCAATAAAAAGAACTTGAATGCTTTGTCTTGCTTATGTTCAA
1 GATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATGTTCAA
* * * * * *
2747863 GGTTGGCTTAATACTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTTAATTTGGTCT
66 GGTTGGCTGAATATTCTAGATCAATTTGGGAATGAATCTAGACAATTTGAAGCTTAATTTGGCCT
* * *
2747928 TAATTTCATCCAAGGGGTGGAAGACTCTTGTTATTTCATGCTGAAATTTGTCTTAATAAGTGAAT
131 TAATTTCATCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAAT
** * *
2747993 TAAATCACTTTTTATTGCATGCTCCCTTGAAGAATATGAACAACGCTTGACTTTAGATGATAACA
196 TAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC-
* * ** * *
2748058 AATCAGCTTCGAATGTATTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCACTTGGATGAA
260 AATAAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTAACTTGGCTGAA
* * *
2748123 ATTGAGAAGAGTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCGTAAAATTCCCGTAACAA
325 GTTGA-AAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAA
* * * *
2748188 AATTCTTGCCTGCACTGTCTTCAATAAATCTATCATA-CTCAAGCTCCCGATATCAGATTGGGGT
389 AATTCATGCATGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGT
* * * *
2748252 GATTCAAAAGGCATTGGAAAGATAAGAGACAGA-GAAATAATTCTCAACTGATTTATGGAGCCAA
454 GATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAAATAATTCCCAATTGATTTATGGAACCAA
* * *
2748316 ACATGTATGTATCGCATACAGTGTTTGATGACATTCTAACTAATATTCTTGAATCTGATGAAATC
519 ACATGTATGTATCGCATACAGAGTTTGAAGACATTCTAACTAATATTCTTGCATCTGATGAAATC
* *
2748381 GTTCAATG-ACGTGACCCACTAGGTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAA
584 GTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAA
* * * ** *
2748445 ATGAAGACTACAAGACTATCCCGAAGCCGATAAAGTTATAGAAGAGAACAAGTATGAAAATAAAC
649 ATGAAGACTACAAGACTATCCCGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACC
*
2748510 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATA
714 TCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATA
2748575 GTATTTCTAAGCAGCATATGAAAACGCTCAACAA
779 GTATTTCTAAGCAGCATATGAAAA-GCTCAA-AA
* * *
2748609 -ATGAAAAAATCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTCTTATGTTAAA
1 GATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATGTTCAA
* *
2748673 GGTTGGCTGAATATTCTAGATCAATTTGGGGATGAATCTAGATAATTTGAAGCTTAATTTGGCCT
66 GGTTGGCTGAATATTCTAGATCAATTTGGGAATGAATCTAGACAATTTGAAGCTTAATTTGGCCT
* * * * **
2748738 TAATTTCGA-CCAGGGGGTTGAAGACTCTTGCTATTCCACGCTGAAAATTGTTTTAATAAGCAAA
131 TAATTTC-ATCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAA
2748802 TTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC
195 TTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC
* * * * * * * *
2748867 AATAATCTTTGAAGGCCTTGAATATGTGATTTAAGAGTCATTCAATGGCTTGTTACTTGGTTGTA
260 AATAAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTAACTTGGCTGAA
* * *
2748932 GTTGAAAAACTCTCCCTTGGTTCAAACTCATCCAAAACATCCATGCATAAAATTCCCATAACAAA
325 GTTGAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAA
* * *
2748997 ATTC-TAGCATGCACTGTCTTAAATTAATCGATCATATCTCAAGCTCCCGATACCAGATTGAGGT
390 ATTCAT-GCATGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGT
*
2749061 GATTCAAAAGGCATTGGAAA-A-AA-A-ATAGATG-AATAATTCCCAATTGATTTATGAAACCAA
454 GATTCAAAAGGCATTGGAAAGATAAGAGATAGATGAAATAATTCCCAATTGATTTATGGAACCAA
** * * * *
2749121 ACATGT-T-TATATCATATCTAGAATATGAAGACATTCTAACTGATATTCTTGCATCTGATTAAA
519 ACATGTATGTATCGCATA-C-AGAGTTTGAAGACATTCTAACTAATATTCTTGCATCTGA-TGAA
* * * * ** *
2749184 ACCGTTCAACGAACGTGACCCGCTAGCCATATACGATGAGCTAGGAACCAACACTATAAAAAAAG
581 ATCGTTCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAACAAAAG
* *
2749249 GAAATGAAGACTACAAGACTA-CCTTGAAGCCGATAAAGTTCTAGAAGAGAACAAGAATGAAAGC
646 GAAATGAAGACTACAAGACTATCC-CGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGC
* * * *
2749313 AACCTCTTAAATATGTTTTATATATTTAAAATGTGTATATACAGATGATCCCAAAGGTGCCTCTT
710 AACCTCTCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTT
*
2749378 TATAGTATTTCTAAGCAGCATATGAAAATACTCAAAA
775 TATAGTATTTCTAAGCAGCATATGAAAA-GCTCAAAA
* * *
2749415 GATGAAAAATTCTCATCAATTTAGCAATAAAATGCAATTGTATGCTTTGTCTTTCTTATATTCAA
1 GATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATGTTCAA
* * *
2749480 GGTTGGCTGAATATTCGAGATC-ATTCTGGGAACGAATCTAGACAATTTGAAGCTTAATATGGCC
66 GGTTGGCTGAATATTCTAGATCAATT-TGGGAATGAATCTAGACAATTTGAAGCTTAATTTGGCC
* * * * *
2749544 TTAATTCCATCCAAGGGGAGGAAGACTCTAGCTATTCCATGC-AAAAATTATCTTAATAAGTGAA
130 TTAATTTCATCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAA
*
2749608 TTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATTATAAC
195 TTAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAAC
* * * * *
2749673 AATCAGCTTTGAATGCCTTGAGTGTGTGAATTATGAGTCCTTCTATGGCTTCTAACTTGGCTGAA
260 AATAAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTAACTTGGCTGAA
* * * *
2749738 GTTGAAAAGACACTCTCTTGGTTCAAACTTATCC--AT-A--CA---A-AAAATTCCCGTAAAAA
325 GTTG-AAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAA
* * * *
2749794 AATTCCAT-CATGCACTCTCTTCAATAAATTGATCATATCTTAAGCTCCCGATATCAAATTGAGG
389 AATT-CATGCATGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGG
2749858 TGATTCAAAAGGCAT
453 TGATTCAAAAGGCAT
2749873 AAGGAATTTG
Statistics
Matches: 3219, Mismatches: 407, Indels: 132
0.86 0.11 0.04
Matches are distributed among these distances:
798 84 0.03
799 263 0.08
800 173 0.05
801 239 0.07
802 23 0.01
803 7 0.00
804 3 0.00
805 70 0.02
806 159 0.05
807 370 0.11
808 88 0.03
809 136 0.04
810 591 0.18
811 527 0.16
812 478 0.15
813 8 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (810 bp):
GATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTCTTATGTTCAA
GGTTGGCTGAATATTCTAGATCAATTTGGGAATGAATCTAGACAATTTGAAGCTTAATTTGGCCT
TAATTTCATCCAAGGGGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTAATAAGTGAAT
TAAATCACCCTTCATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTAGATGATAACA
ATAAGCTTTGAATGCCTTGAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTAACTTGGCTGAAG
TTGAAAGACTCTCCCTTGGTTCAAACTCATCCAAATCATCCATGCATAAAATTCCCGTAACAAAA
TTCATGCATGCACTGTCTTCAATAAATCGATCATATCTCAAGCTCCCGATATCAGATTGAGGTGA
TTCAAAAGGCATTGGAAAGATAAGAGATAGATGAAATAATTCCCAATTGATTTATGGAACCAAAC
ATGTATGTATCGCATACAGAGTTTGAAGACATTCTAACTAATATTCTTGCATCTGATGAAATCGT
TCAACGAACGTGACCCACTAGCTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAAT
GAAGACTACAAGACTATCCCGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAGCAACCTC
TCAAAGATGTTTTATATATTCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTCTTTATAGT
ATTTCTAAGCAGCATATGAAAAGCTCAAAA
Found at i:2751749 original size:809 final size:810
Alignment explanation
Indices: 2749879--2752132 Score: 3344
Period size: 809 Copynumber: 2.8 Consensus size: 810
2749869 GCATAAGGAA
* * * ** *
2749879 TTTGAAGATATTCTGACTGATATTGTTGCATCTGATGAAATTGTTCAACGAACGTGACCCT-GTA
1 TTTGAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGA-CCTAATA
* * **
2749943 GCTATATATGATGACCTAGGAACCAACT-CTATAACAAAATTAAATGAAGACTACAAGACTATCT
65 GGTATATATGATGAGCTAGGAACCAA-TGCTATAACAAAAGGAAATGAAGACTACAAGACTATCT
* * * * * * *
2750007 TGAAGACGATAAAGTTATTCAA-AGAACAAGAATTAAAGCAACCTCTCAAAGATGTTATATATAT
129 TGAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATAT
* * *
2750071 TCAAAATGTGTATATACAAATGATCCCAAATGTGCCTCTTTATAGTATTTCTAAGCAACATATGA
194 TCAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGA
* * * * *
2750136 AAAGACTCAAAAGATGGAAAATTCTCATTATTTTAGCAATAAAATGCACTTGAATGCTTTGTATT
259 AAAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTT
* * *
2750201 TCATATCTTCAAGGTTGTCTGAATATTCTAGATCATTTTGGGAATGAATCAAGACAATTTGAAGC
324 TCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGC
* * *
2750266 TTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAATATTGTTGCTATTTCATGCTGAAAATTGTCT
389 TTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCT
2750331 TAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTT
454 TAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTT
* * *
2750396 TAGATGATAACAAATAAGCTTTGAATGCTTTTAATGTATGAATTAAGAGTCCTTCAATGGCTTAT
519 TAGATGATAACAAATAAGCTTTGAATGC-CTTAATGTGTGAATTAAGAGTCCTTCAATGGCTTGT
* *
2750461 CACTTGGATTG-AATTGAGAAGACTCTCCCTTGGTTCAAACTGATCCAAATCATCCATGCGTAGA
583 CACTTGGA-TGAAATTGAGAAGACTCTCCCTTGGTTCAAACT-ATCCAAATCATCCAAGCGTAAA
* *
2750525 ATTCCCGTAACAAAATTCATGCCTGCACTGTCTTCAATAAATCGATCCTATCTCAAGCCCCCGAT
646 ATTCCCGTAACAAAATTCATGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCCCCCGAT
* * * * *
2750590 ATCGGATTGGGGTGATTCAAAAGGAATTCGAAAGATAAGAGATATAGAAATAATTCTTAATTGAT
711 ATCAGATTAGGGTGATTCAAAAGGAATTCGAAAGATAAGAGATAGAGAAATAATTCTCAACTGAT
* * ** * *
2750655 TTCTGGAACCAAACATGTCTGTATCGTATCCATAT
776 TTCTAGAACCAAACATGTATGTATCACATCCAGAG
*
2750690 TTTGAAGACATTCAT-ACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCCAATA
1 TTTGAAGACATTC-TGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCTAATA
*
2750754 GGTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTAACTT
65 GGTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTT
* * *
2750819 CAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAATCAAACTCTCAAAGATGTTTTATAAATT
130 GAAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATT
* ** *
2750884 CAATATGTGTATATACAAATGATCTGAAAGGTGCCTATTTATAGTATTTATAAGCAGCATATGAA
195 CAAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAA
* * *
2750949 AAGGCTCAAAAGATGAAAAATTCCCATCAATTTAGCAATAAAAAT-CACTTAAATGCTTTCTCTT
260 AAGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAAT-AAAATGCACTTGAATGCTTTGTCTT
* *
2751013 TCTTATCTTCAAGGTTGGCTTAATTTTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGC
324 TCTTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGC
*
2751078 TTAATTTGGTCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCT
389 TTAATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCT
* * *
2751143 TAATAAGTGAATTAAATAACCTTTTATTGCATGTTTCCTTGAAGAATATGAACAACCCTTGACTT
454 TAATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTT
2751208 TAGATGATAACAAATCAA-CTTTGAATGCCTTAATGTGTGAATTAAGAGTCCTTCAATGGCTTGT
519 TAGATGATAACAAAT-AAGCTTTGAATGCCTTAATGTGTGAATTAAGAGTCCTTCAATGGCTTGT
* * *
2751272 CACTTGGATGAAATTGAGAAGACT-TTCATTGGTTCAAACTCATCCAGATCATCCAAGCGTAAAA
583 CACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACT-ATCCAAATCATCCAAGCGTAAAA
* * * *
2751336 TTCCCGTAATAAAATTCATGCCTGCACTATTTTCAATAAATTGATCATA-CTCAAGCTCCCGATA
647 TTCCCGTAACAAAATTCATGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCCCCCGATA
* * * * *
2751400 TCAGATTAGGGTGTTTCAAAAGGCATTGGAACGATAAGAGATGGAGAAATAATTCTCAACTGATT
712 TCAGATTAGGGTGATTCAAAAGGAATTCGAAAGATAAGAGATAGAGAAATAATTCTCAACTGATT
*
2751465 TCTAGAGCCAAACATGTATGTATCACATCCAGAG
777 TCTAGAACCAAACATGTATGTATCACATCCAGAG
* * * * *
2751499 TTTGATGACATTCTGACTAATATTCTTGAATCTGATGAAACCGTTCAATGAATGTGACCTACTAG
1 TTTGAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCTAATAG
* *
2751564 GTATATATGAGGAGATAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTG
66 GTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTG
* * *
2751629 AATCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAATTCTCTAAGATGTTTTATATATTC
131 AAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTC
2751694 AAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAA
196 AAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAA
* * *
2751759 ATGCTCAACAGATGAAAAATTCTCATCAATTTAGAAATAAAATGCACTTGAATGCTTTGTCTTTC
261 AGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTC
* * * *
2751824 TTATCTTCAAGGTTTGCTGAATATTCTAGATCATTTTGGGGATGAATCTAGATAATTTGATGCTT
326 TTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTT
* * *
2751889 AATTTGGCCTTAATTTCGACCAAGGAGTGGAAGACTCTTGCTATTCCATGCTGAAAATTGTCTTA
391 AATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTA
* * * *
2751954 ATAAGCGAATTAAATCACCTTTCATTGCATGCTCCCTTGAAGAATATAAACAATCCTTGACTTTA
456 ATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTA
* ** *
2752019 GAAT-ATAAC-AATAAGCTTTGAATG-CTTGAATGCGTGGTTTAAGAGTCCTTCAATGGGTTGTC
521 G-ATGATAACAAATAAGCTTTGAATGCCTT-AATGTGTGAATTAAGAGTCCTTCAATGGCTTGTC
2752081 ACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACATATCCAAATCAT
584 ACTTGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAAC-TATCCAAATCAT
2752133 ATCTCAAGCT
Statistics
Matches: 1300, Mismatches: 129, Indels: 30
0.89 0.09 0.02
Matches are distributed among these distances:
807 5 0.00
808 71 0.05
809 595 0.46
810 86 0.07
811 181 0.14
812 355 0.27
813 7 0.01
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (810 bp):
TTTGAAGACATTCTGACTAATATTCTTGCATCTGATGAAACCGTTCAACGAACGTGACCTAATAG
GTATATATGATGAGCTAGGAACCAATGCTATAACAAAAGGAAATGAAGACTACAAGACTATCTTG
AAGCCGATAAAGTTCTACAAGAGAACAAGAATGAAAACAAACTCTCAAAGATGTTTTATATATTC
AAAATGTGTATATACAAATGATCCCAAAGGTGCCTATTTATAGTATTTCTAAGCAGCATATGAAA
AGGCTCAAAAGATGAAAAATTCTCATCAATTTAGCAATAAAATGCACTTGAATGCTTTGTCTTTC
TTATCTTCAAGGTTGGCTGAATATTCTAGATCATTTTGGGGATGAATCAAGACAATTTGAAGCTT
AATTTGGCCTTAATTTCGTCCAAGGGGTGGAAGACTCTTGCTATTTCATGCTGAAAATTGTCTTA
ATAAGTGAATTAAATCACCTTTTATTGCATGCTCCCTTGAAGAATATGAACAACCCTTGACTTTA
GATGATAACAAATAAGCTTTGAATGCCTTAATGTGTGAATTAAGAGTCCTTCAATGGCTTGTCAC
TTGGATGAAATTGAGAAGACTCTCCCTTGGTTCAAACTATCCAAATCATCCAAGCGTAAAATTCC
CGTAACAAAATTCATGCCTGCACTATCTTCAATAAATCGATCATATCTCAAGCCCCCGATATCAG
ATTAGGGTGATTCAAAAGGAATTCGAAAGATAAGAGATAGAGAAATAATTCTCAACTGATTTCTA
GAACCAAACATGTATGTATCACATCCAGAG
Found at i:2760516 original size:24 final size:22
Alignment explanation
Indices: 2760479--2760536 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
2760469 AGCTCCATCG
*
2760479 AAAAAAAAAAAGTT-GAATGCAA
1 AAAAAAAAAAAGTTCGAACG-AA
2760501 AAAAAAAACAACAGTTCGAACGAA
1 AAAAAAAA-AA-AGTTCGAACGAA
2760525 AAAAAAGAAAAA
1 AAAAAA-AAAAA
2760537 AAAGAGGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 8 0.26
23 3 0.10
24 14 0.45
25 6 0.19
ACGTcount: A:0.71, C:0.09, G:0.12, T:0.09
Consensus pattern (22 bp):
AAAAAAAAAAAGTTCGAACGAA
Found at i:2765680 original size:17 final size:17
Alignment explanation
Indices: 2765658--2765814 Score: 120
Period size: 17 Copynumber: 9.1 Consensus size: 17
2765648 AATTAAGAGT
*
2765658 TAGTTTAATAAATGAAC
1 TAGTTTAATCAATGAAC
* *
2765675 TAGTTTAGTTAATGAAC
1 TAGTTTAATCAATGAAC
* *
2765692 TATCTTTATTCAATGAAC
1 TA-GTTTAATCAATGAAC
*
2765710 T--TGTAATCTTGAATGAAC
1 TAGTTTAATC---AATGAAC
* * *
2765728 TGGTTTGATGAATGAAC
1 TAGTTTAATCAATGAAC
* *
2765745 TAGTTTGATAAATGAAC
1 TAGTTTAATCAATGAAC
* * *
2765762 TAATTTGATGAATGAAC
1 TAGTTTAATCAATGAAC
*
2765779 TAGTCTAATCAATGAAC
1 TAGTTTAATCAATGAAC
*
2765796 AAGTTTAATCAATGAAC
1 TAGTTTAATCAATGAAC
2765813 TA
1 TA
2765815 CTTAGTTAAA
Statistics
Matches: 113, Mismatches: 21, Indels: 12
0.77 0.14 0.08
Matches are distributed among these distances:
15 5 0.04
17 83 0.73
18 21 0.19
20 4 0.04
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (17 bp):
TAGTTTAATCAATGAAC
Found at i:2765706 original size:18 final size:17
Alignment explanation
Indices: 2765668--2765710 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
2765658 TAGTTTAATA
*
2765668 AATGAACTAGTTTAGTT
1 AATGAACTACTTTAGTT
2765685 AATGAACTATCTTTA-TT
1 AATGAACTA-CTTTAGTT
2765702 CAATGAACT
1 -AATGAACT
2765711 TGTAATCTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (17 bp):
AATGAACTACTTTAGTT
Found at i:2766575 original size:14 final size:14
Alignment explanation
Indices: 2766556--2766585 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2766546 TAACTGAAGG
*
2766556 ATAAAATATATTGC
1 ATAAAATATAGTGC
2766570 ATAAAATATAGTGC
1 ATAAAATATAGTGC
2766584 AT
1 AT
2766586 CGGTTCACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (14 bp):
ATAAAATATAGTGC
Found at i:2767901 original size:17 final size:17
Alignment explanation
Indices: 2767879--2768051 Score: 197
Period size: 17 Copynumber: 10.1 Consensus size: 17
2767869 AATTAAGAGT
*
2767879 TAGTTTGATAAATGAAC
1 TAGTTTGATGAATGAAC
2767896 TAGTTTGATGAATGAAC
1 TAGTTTGATGAATGAAC
* *
2767913 TAGTTTAATTAATGAAC
1 TAGTTTGATGAATGAAC
* *
2767930 TAACTTT-ATTCAATGAAC
1 T-AGTTTGA-TGAATGAAC
* * **
2767948 TTGTAATCTTGAATGAAC
1 TAGT-TTGATGAATGAAC
2767966 TAGTTTGATG-ATGAAC
1 TAGTTTGATGAATGAAC
2767982 TAGTTTGATGAATGAAC
1 TAGTTTGATGAATGAAC
2767999 TAGTTTGATGAATGAAC
1 TAGTTTGATGAATGAAC
*
2768016 TAGTTTAATGAATGAAC
1 TAGTTTGATGAATGAAC
* *
2768033 TAGTTTAATTAATGAAC
1 TAGTTTGATGAATGAAC
2768050 TA
1 TA
2768052 CTTAGTTAAA
Statistics
Matches: 135, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
16 16 0.12
17 94 0.70
18 25 0.19
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (17 bp):
TAGTTTGATGAATGAAC
Found at i:2768063 original size:17 final size:17
Alignment explanation
Indices: 2768043--2768088 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
2768033 TAGTTTAATT
* *
2768043 AATGAACTACTTAGTTA
1 AATGAACTACATAGCTA
* *
2768060 AATGAAGTGCATAGCTA
1 AATGAACTACATAGCTA
2768077 AATGAACTACAT
1 AATGAACTACAT
2768089 GTTTAAATTC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (17 bp):
AATGAACTACATAGCTA
Found at i:2769168 original size:27 final size:27
Alignment explanation
Indices: 2769128--2769179 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
2769118 TCTAAGAAGC
* *
2769128 ATATGAAAATACTCAATAGATGAAAGT
1 ATATGAAAAGACTCAAAAGATGAAAGT
2769155 ATATGAAAAGACTCAAAAGATGAAA
1 ATATGAAAAGACTCAAAAGATGAAA
2769180 ACATTCTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.56, C:0.08, G:0.15, T:0.21
Consensus pattern (27 bp):
ATATGAAAAGACTCAAAAGATGAAAGT
Found at i:2771657 original size:16 final size:16
Alignment explanation
Indices: 2771636--2771674 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
2771626 ATCATTCATT
2771636 TGCATGATTATGCTTG
1 TGCATGATTATGCTTG
2771652 TGCATGATTATGCTTG
1 TGCATGATTATGCTTG
2771668 TGCATGA
1 TGCATGA
2771675 ATTTGCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.41
Consensus pattern (16 bp):
TGCATGATTATGCTTG
Found at i:2771829 original size:17 final size:17
Alignment explanation
Indices: 2771795--2771838 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
2771785 TTTAACTATG
* *
2771795 TAGTTCATTGATTAAAC
1 TAGTTCATTCATCAAAC
*
2771812 TAGTTCATTCATCGAAC
1 TAGTTCATTCATCAAAC
*
2771829 TACTTCATTC
1 TAGTTCATTC
2771839 TGGTATCAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (17 bp):
TAGTTCATTCATCAAAC
Found at i:2771958 original size:17 final size:17
Alignment explanation
Indices: 2771936--2772014 Score: 113
Period size: 17 Copynumber: 4.6 Consensus size: 17
2771926 TATAAAAAGT
*
2771936 TGAATGAACTAGTTTGA
1 TGAATGAACTAGTTTAA
**
2771953 TGAATGAAAAAGTTTAA
1 TGAATGAACTAGTTTAA
*
2771970 TGAATGAACTAGTTTTA
1 TGAATGAACTAGTTTAA
*
2771987 TGAATGAAATAGTTTAA
1 TGAATGAACTAGTTTAA
2772004 TGAATGAACTA
1 TGAATGAACTA
2772015 CTTAATTAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 53 1.00
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (17 bp):
TGAATGAACTAGTTTAA
Found at i:2771979 original size:34 final size:34
Alignment explanation
Indices: 2771936--2772014 Score: 140
Period size: 34 Copynumber: 2.3 Consensus size: 34
2771926 TATAAAAAGT
2771936 TGAATGAACTAGTTTGATGAATGAAAAAGTTTAA
1 TGAATGAACTAGTTTGATGAATGAAAAAGTTTAA
* *
2771970 TGAATGAACTAGTTTTATGAATGAAATAGTTTAA
1 TGAATGAACTAGTTTGATGAATGAAAAAGTTTAA
2772004 TGAATGAACTA
1 TGAATGAACTA
2772015 CTTAATTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (34 bp):
TGAATGAACTAGTTTGATGAATGAAAAAGTTTAA
Found at i:2781644 original size:11 final size:11
Alignment explanation
Indices: 2781619--2781665 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
2781609 AAGTTCACTG
2781619 AAAATAAAAC-
1 AAAATAAAACA
*
2781629 GAAATAAAACA
1 AAAATAAAACA
*
2781640 AAAATAAAATAA
1 AAAATAAAA-CA
*
2781652 AAAATATAACA
1 AAAATAAAACA
2781663 AAA
1 AAA
2781666 TTGGTTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
10 9 0.30
11 12 0.40
12 9 0.30
ACGTcount: A:0.79, C:0.06, G:0.02, T:0.13
Consensus pattern (11 bp):
AAAATAAAACA
Found at i:2783664 original size:18 final size:18
Alignment explanation
Indices: 2783641--2783680 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
2783631 GAGCGTATAG
2783641 CTTTATCAACCACAATCC
1 CTTTATCAACCACAATCC
2783659 CTTTATCAACCACAATCC
1 CTTTATCAACCACAATCC
2783677 CTTT
1 CTTT
2783681 TGAGGAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.38, G:0.00, T:0.33
Consensus pattern (18 bp):
CTTTATCAACCACAATCC
Found at i:2786910 original size:19 final size:18
Alignment explanation
Indices: 2786874--2786917 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
2786864 GTTGTTTTTA
*
2786874 AAATAAAAAATAAGAATT
1 AAATAAAAAAAAAGAATT
*
2786892 AAATAAAAGAAAAATAATT
1 AAATAAAA-AAAAAGAATT
2786911 AAATAAA
1 AAATAAA
2786918 CAAATTAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (18 bp):
AAATAAAAAAAAAGAATT
Found at i:2787602 original size:19 final size:19
Alignment explanation
Indices: 2787546--2787608 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
2787536 CTATTTAAAC
**
2787546 TAAAATAACTAAAAAATAAT
1 TAAAAT-ACTAAAACCTAAT
* * *
2787566 ATAATATTCTAAATCCTAAT
1 -TAAAATACTAAAACCTAAT
*
2787586 TAAAATACTAAAACCTATT
1 TAAAATACTAAAACCTAAT
2787605 TAAA
1 TAAA
2787609 CTAAAATACC
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 19 0.58
20 9 0.27
21 5 0.15
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAATACTAAAACCTAAT
Found at i:2791198 original size:2 final size:2
Alignment explanation
Indices: 2791191--2791235 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
2791181 CCTTTAGAAT
2791191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2791233 TA T
1 TA T
2791236 GCTTTTTTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2792215 original size:22 final size:25
Alignment explanation
Indices: 2792190--2792237 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
2792180 CTTCATCGAC
2792190 TTCATC-ATC-CATCTTC-ACAACA
1 TTCATCTATCACATCTTCTACAACA
2792212 TTCATCTATCATCATCTTCTACAACA
1 TTCATCTATCA-CATCTTCTACAACA
2792238 ATACTTTGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 3 0.14
25 7 0.32
26 6 0.27
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.35
Consensus pattern (25 bp):
TTCATCTATCACATCTTCTACAACA
Found at i:2792311 original size:20 final size:20
Alignment explanation
Indices: 2792272--2792312 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
2792262 TTTTCATTAC
* * *
2792272 TTATTACCTATCTTATTCCA
1 TTATTAACTATCCTAATCCA
2792292 TTATTAACTATCCTAATCCA
1 TTATTAACTATCCTAATCCA
2792312 T
1 T
2792313 CACATATATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATTAACTATCCTAATCCA
Found at i:2794337 original size:52 final size:52
Alignment explanation
Indices: 2794259--2794388 Score: 215
Period size: 52 Copynumber: 2.5 Consensus size: 52
2794249 TATACTAAAA
* *
2794259 AAATGGCAATGTCTCAAAAGATCTTACAAGATTAAACATATTATGCTACAAC
1 AAATGACAATGTCTCAAAAGCTCTTACAAGATTAAACATATTATGCTACAAC
2794311 AAATGACAATGTCTCAAAAGCTCTTACAAGATTAAACATATTATGCTACAAC
1 AAATGACAATGTCTCAAAAGCTCTTACAAGATTAAACATATTATGCTACAAC
* * *
2794363 AAACGACAATATCCCAAAAGCTCTTA
1 AAATGACAATGTCTCAAAAGCTCTTA
2794389 TAATGCTATA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.45, C:0.20, G:0.10, T:0.25
Consensus pattern (52 bp):
AAATGACAATGTCTCAAAAGCTCTTACAAGATTAAACATATTATGCTACAAC
Found at i:2797347 original size:16 final size:17
Alignment explanation
Indices: 2797321--2797353 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2797311 AGTTTCCTTT
*
2797321 ATTTGTAATCAATCAAA
1 ATTTGTAATCAAACAAA
2797338 ATTT-TAATCAAACAAA
1 ATTTGTAATCAAACAAA
2797354 CATATTGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.33
Consensus pattern (17 bp):
ATTTGTAATCAAACAAA
Found at i:2807456 original size:13 final size:13
Alignment explanation
Indices: 2807435--2807496 Score: 71
Period size: 13 Copynumber: 5.2 Consensus size: 13
2807425 GGTCAACGGT
*
2807435 GGGTTGGGTCAAC
1 GGGTCGGGTCAAC
2807448 GGGTCGGGTCAAC
1 GGGTCGGGTCAAC
2807461 GGGTCGGGTCAA-
1 GGGTCGGGTCAAC
*
2807473 ----CAGGTCAAC
1 GGGTCGGGTCAAC
2807482 GGGTCGGGTCAAC
1 GGGTCGGGTCAAC
2807495 GG
1 GG
2807497 ACCGGTTTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
8 7 0.17
13 34 0.83
ACGTcount: A:0.18, C:0.21, G:0.45, T:0.16
Consensus pattern (13 bp):
GGGTCGGGTCAAC
Found at i:2807478 original size:21 final size:21
Alignment explanation
Indices: 2807454--2807494 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
2807444 CAACGGGTCG
2807454 GGTCAACGGGTCGGGTCAACA
1 GGTCAACGGGTCGGGTCAACA
2807475 GGTCAACGGGTCGGGTCAAC
1 GGTCAACGGGTCGGGTCAAC
2807495 GGACCGGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.24, G:0.39, T:0.15
Consensus pattern (21 bp):
GGTCAACGGGTCGGGTCAACA
Found at i:2807522 original size:19 final size:19
Alignment explanation
Indices: 2807497--2807542 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
2807487 GGGTCAACGG
* *
2807497 ACCGGTTTGGATCGGTCAA
1 ACCGGTTTAGACCGGTCAA
*
2807516 CCCGGTTTAGACCGGTCAA
1 ACCGGTTTAGACCGGTCAA
2807535 ACCGGTTT
1 ACCGGTTT
2807543 CAAGCACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (19 bp):
ACCGGTTTAGACCGGTCAA
Found at i:2808523 original size:13 final size:13
Alignment explanation
Indices: 2808481--2808523 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
2808471 GGAGGTCAAC
2808481 GGTCAACGAGTCG
1 GGTCAACGAGTCG
* * *
2808494 GGTTAACAAGTCC
1 GGTCAACGAGTCG
*
2808507 GGTCAACGGGTCG
1 GGTCAACGAGTCG
2808520 GGTC
1 GGTC
2808524 GGGTCGGACC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.37, T:0.19
Consensus pattern (13 bp):
GGTCAACGAGTCG
Found at i:2810403 original size:33 final size:33
Alignment explanation
Indices: 2810360--2810422 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
2810350 AATCAATATC
2810360 TTTTGCTTTAAATAAAGCTAGACTGCAATATTA
1 TTTTGCTTTAAATAAAGCTAGACTGCAATATTA
* *
2810393 TTTTGTTTTAAATAAAGCTAGACTGTAATA
1 TTTTGCTTTAAATAAAGCTAGACTGCAATA
2810423 CAAATTCAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.41
Consensus pattern (33 bp):
TTTTGCTTTAAATAAAGCTAGACTGCAATATTA
Found at i:2812145 original size:21 final size:21
Alignment explanation
Indices: 2812119--2812164 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
2812109 AAGTTTTTTT
**
2812119 TTTTGATAATTCAAAGTTTGA
1 TTTTGATAATTCAAAGGATGA
*
2812140 TTTTGATGATTCAAAGGATGA
1 TTTTGATAATTCAAAGGATGA
2812161 TTTT
1 TTTT
2812165 TATGTTAGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.04, G:0.17, T:0.48
Consensus pattern (21 bp):
TTTTGATAATTCAAAGGATGA
Found at i:2815704 original size:22 final size:22
Alignment explanation
Indices: 2815674--2815723 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
2815664 CATACCTATA
*
2815674 ATATCATTCACAATAAATATCAT
1 ATAT-ATTCACAATAAACATCAT
**
2815697 ATATATTCATGATAAACATCAT
1 ATATATTCACAATAAACATCAT
2815719 ATATA
1 ATATA
2815724 ATAACCAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (22 bp):
ATATATTCACAATAAACATCAT
Found at i:2819610 original size:15 final size:14
Alignment explanation
Indices: 2819577--2819614 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
2819567 CAAATGCCAT
*
2819577 TGTAAGATATTACA
1 TGTAAAATATTACA
2819591 T-TAAAATATTACA
1 TGTAAAATATTACA
2819604 TAGTAAAATAT
1 T-GTAAAATAT
2819615 GAACCAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 12 0.57
14 1 0.05
15 8 0.38
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (14 bp):
TGTAAAATATTACA
Found at i:2831797 original size:64 final size:64
Alignment explanation
Indices: 2831715--2831842 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
2831705 ATGGCCATGC
* **
2831715 TCGAACAAGTTGATATGAGATATCACAAGTTGTTTGTTTATTTTAGTATACTCTAGATATCAAG
1 TCGAACAAGTTGACATGAGATATCACAAGTTGTTTGTTTATTGCAGTATACTCTAGATATCAAG
* *
2831779 TCGAACAAGTTGGCATGAGATATCACAAGTTGTTTGTTTATTGCAGTCTACTCTAGATATCAAG
1 TCGAACAAGTTGACATGAGATATCACAAGTTGTTTGTTTATTGCAGTATACTCTAGATATCAAG
2831843 AAATAATAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (64 bp):
TCGAACAAGTTGACATGAGATATCACAAGTTGTTTGTTTATTGCAGTATACTCTAGATATCAAG
Found at i:2836989 original size:16 final size:16
Alignment explanation
Indices: 2836968--2837011 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
2836958 TGCTTTTTAA
*
2836968 CAAAGTTTGAGGTATT
1 CAAAGTGTGAGGTATT
2836984 CAAAGTGTGAGGTATT
1 CAAAGTGTGAGGTATT
2837000 CAAAGTGTGAGG
1 CAAAGTGTGAGG
2837012 CAATACCTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.30
Consensus pattern (16 bp):
CAAAGTGTGAGGTATT
Found at i:2841545 original size:2 final size:2
Alignment explanation
Indices: 2841534--2841567 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
2841524 TCTAATGAAA
2841534 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2841568 AGATTTTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2843380 original size:3 final size:3
Alignment explanation
Indices: 2843372--2843456 Score: 79
Period size: 3 Copynumber: 29.0 Consensus size: 3
2843362 GACCTGTTTG
* *
2843372 TAA TAA TAA TAA TAT TAA TAA TAA AAA TAAA TAA TAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
* **
2843417 TTA TAA TAA TTT TAA TAA -ACA -AA TAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
2843457 AAAACAAAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
2 6 0.09
3 58 0.87
4 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:2843422 original size:11 final size:11
Alignment explanation
Indices: 2843372--2843424 Score: 58
Period size: 11 Copynumber: 5.0 Consensus size: 11
2843362 GACCTGTTTG
2843372 TAATAATAATAA
1 TAATAATAAT-A
*
2843384 TATTAATAATA
1 TAATAATAATA
2843395 -AA-AATAA-A
1 TAATAATAATA
2843403 TAATAATAATA
1 TAATAATAATA
*
2843414 TAATTATAATA
1 TAATAATAATA
2843425 ATTTTAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
8 1 0.03
9 7 0.20
10 6 0.17
11 12 0.34
12 9 0.26
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATAATAATA
Found at i:2843432 original size:42 final size:42
Alignment explanation
Indices: 2843372--2843455 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
2843362 GACCTGTTTG
2843372 TAATAATAATAATATTAATAATAAAAAT-AAATAATAATAATA
1 TAATAATAATAATATTAATAA-AAAAATAAAATAATAATAATA
* * *
2843414 TAATTATAATAATTTTAATAAACAAATAAAATAATAATAATA
1 TAATAATAATAATATTAATAAAAAAATAAAATAATAATAATA
2843456 AAAAACAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 5 0.13
42 33 0.87
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (42 bp):
TAATAATAATAATATTAATAAAAAAATAAAATAATAATAATA
Found at i:2844181 original size:112 final size:112
Alignment explanation
Indices: 2843982--2844198 Score: 348
Period size: 112 Copynumber: 1.9 Consensus size: 112
2843972 ATAGAGTCAT
* * *
2843982 GCAAAAGGTTGAACAAGTTCTTCTCACTATGAACTTCTTCTTCCTCTTCAGTTGAGTTCTTCTCA
1 GCAAAAGGTTGAACAAGCTCTTCTCACTATGAACTTCTTCTTCCTCTTAAGATGAGTTCTTCTCA
*
2844047 TTATGAACTCTACCTGGCAATGTTGATCA-ATTGAGTGATGAATTTGA
66 TTATGAACTCTACCTGGAAATGTTGAT-ATATTGAGTGATGAATTTGA
*
2844094 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTAAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCACTATGAACTTCTTCTTCC-TCTTAAGATGAGTTCTTCTC
*
2844159 ATTATGAACTCTTCC-GGAAATGTTGATATATTGAGTGATG
65 ATTATGAACTCTACCTGGAAATGTTGATATATTGAGTGATG
2844199 GATTCGAATT
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
111 1 0.01
112 64 0.66
113 32 0.33
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (112 bp):
GCAAAAGGTTGAACAAGCTCTTCTCACTATGAACTTCTTCTTCCTCTTAAGATGAGTTCTTCTCA
TTATGAACTCTACCTGGAAATGTTGATATATTGAGTGATGAATTTGA
Found at i:2844547 original size:22 final size:22
Alignment explanation
Indices: 2844485--2844548 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
2844475 GAAATCCGAT
* * *
2844485 AAATCTTTCTTCTTTGAAAAGA
1 AAATCTATCATCTTTGAAGAGA
* *
2844507 GAGTCTATCATCTTTGAAGAGA
1 AAATCTATCATCTTTGAAGAGA
2844529 AAATCTATCATCTTTGAAGA
1 AAATCTATCATCTTTGAAGA
2844549 ATGCAGATGT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (22 bp):
AAATCTATCATCTTTGAAGAGA
Found at i:2845780 original size:74 final size:75
Alignment explanation
Indices: 2845650--2845827 Score: 250
Period size: 74 Copynumber: 2.4 Consensus size: 75
2845640 CATGATGATG
* ** * **
2845650 TGGGCCTTCAGCATGCCCCAGCATTTGCTGATATTAATGTTCAAAACGTCTAAATATTCTTGATT
1 TGGGCTTTCAGCATGCCCCAGCATTTGCTGATACAAACGTTCAAAACGTCTAAATATTCCAGATT
2845715 CTGATTGAAA
66 CTGATTGAAA
* * * *
2845725 TGGGCTTTCAGCATGCCCCA-CATTTGCTGATACAAACGTTCAAAATGTGTTAATATTCCAGTTT
1 TGGGCTTTCAGCATGCCCCAGCATTTGCTGATACAAACGTTCAAAACGTCTAAATATTCCAGATT
2845789 CTGATTGAAA
66 CTGATTGAAA
*
2845799 TGGGCTTTCAACATGCCCCAGCATTTGCT
1 TGGGCTTTCAGCATGCCCCAGCATTTGCT
2845828 TCTTGCTAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
74 64 0.70
75 27 0.30
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (75 bp):
TGGGCTTTCAGCATGCCCCAGCATTTGCTGATACAAACGTTCAAAACGTCTAAATATTCCAGATT
CTGATTGAAA
Found at i:2847390 original size:161 final size:163
Alignment explanation
Indices: 2847125--2847450 Score: 629
Period size: 161 Copynumber: 2.0 Consensus size: 163
2847115 TTTGGGGTTC
2847125 TTACCGAACTAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAGGGCCTCCTTATATC
1 TTACCGAACTAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAGGGCCTCCTTATATC
*
2847190 TACTACGAGAACTTGCCACTTGCTTTAGTTGGTGTTTGGATCGAAATGTCATGGTACCTATACGA
66 TACTACGAGAACTTGCCACTTGCTTCAGTTGGTGTTTGGATCGAAATGTCATGGTACCTATACGA
2847255 TGTAGAG-CAGAATTTGAAGATTC-AAGTATTT
131 TGTAGAGCCAGAATTTGAAGATTCAAAGTATTT
2847286 TTACCGAACTAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAGGGCCTCCTTATATC
1 TTACCGAACTAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAGGGCCTCCTTATATC
2847351 TACTACGAGAACTTGCCACTTGCTTCAGTTGGTGTTTGGATCGAAATGTCATGGTACCTATACGA
66 TACTACGAGAACTTGCCACTTGCTTCAGTTGGTGTTTGGATCGAAATGTCATGGTACCTATACGA
2847416 TGTAGAGCCAGAATTTGAAGATTCAAAGTATTT
131 TGTAGAGCCAGAATTTGAAGATTCAAAGTATTT
2847449 TT
1 TT
2847451 GTTCTGCTGC
Statistics
Matches: 162, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
161 136 0.84
162 16 0.10
163 10 0.06
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (163 bp):
TTACCGAACTAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAGGGCCTCCTTATATC
TACTACGAGAACTTGCCACTTGCTTCAGTTGGTGTTTGGATCGAAATGTCATGGTACCTATACGA
TGTAGAGCCAGAATTTGAAGATTCAAAGTATTT
Found at i:2853932 original size:3 final size:3
Alignment explanation
Indices: 2853924--2853977 Score: 74
Period size: 3 Copynumber: 18.0 Consensus size: 3
2853914 GACATGTTTG
*
2853924 TAA TAA TAA TAA TAT TAA TAA TAA -AA TAA TAA TAA TATA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
*
2853969 TAG TAA TAA
1 TAA TAA TAA
2853978 ACAAATAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
2 2 0.04
3 40 0.89
4 3 0.07
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:2853953 original size:20 final size:21
Alignment explanation
Indices: 2853925--2853977 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 21
2853915 ACATGTTTGT
2853925 AATAATAATAATATTAATAATAA
1 AATAATAATAATA-T-ATAATAA
2853948 AATAATAATAATATATAATAA
1 AATAATAATAATATATAATAA
*
2853969 TAGTAATAA
1 -AATAATAA
2853978 ACAAATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 7 0.25
22 8 0.29
23 13 0.46
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
AATAATAATAATATATAATAA
Found at i:2853955 original size:23 final size:24
Alignment explanation
Indices: 2853925--2853970 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
2853915 ACATGTTTGT
2853925 AATAATAATAATAT-TAATAATAA
1 AATAATAATAATATATAATAATAA
2853948 AATAATAATAATATATAATAATA
1 AATAATAATAATATATAATAATA
2853971 GTAATAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
AATAATAATAATATATAATAATAA
Found at i:2853969 original size:33 final size:32
Alignment explanation
Indices: 2853924--2853993 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 32
2853914 GACATGTTTG
*
2853924 TAATAATAATAATATTAATAATA-AAATAATAA
1 TAATAATAATAATAGTAATAA-ACAAATAATAA
2853956 TAATATATAATAATAGTAATAAACAAATAA-AA
1 TAATA-ATAATAATAGTAATAAACAAATAATAA
*
2853988 CAATAA
1 TAATAA
2853994 AAAAAACAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 1 0.03
32 12 0.35
33 21 0.62
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (32 bp):
TAATAATAATAATAGTAATAAACAAATAATAA
Found at i:2857230 original size:20 final size:21
Alignment explanation
Indices: 2857205--2857253 Score: 82
Period size: 20 Copynumber: 2.4 Consensus size: 21
2857195 AACCTCGTTA
2857205 AGGCTTTGATCGATATT-TGT
1 AGGCTTTGATCGATATTGTGT
2857225 AGGCTTTGATCGATATTGTGT
1 AGGCTTTGATCGATATTGTGT
*
2857246 GGGCTTTG
1 AGGCTTTG
2857254 CCAAAGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 17 0.63
21 10 0.37
ACGTcount: A:0.16, C:0.10, G:0.31, T:0.43
Consensus pattern (21 bp):
AGGCTTTGATCGATATTGTGT
Found at i:2869083 original size:24 final size:24
Alignment explanation
Indices: 2869055--2869110 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
2869045 TCAAAGTGGC
2869055 GAGAAAACTC-TAATATTGCGTAGA
1 GAGAAAAC-CATAATATTGCGTAGA
*
2869079 GAGAAAAACCATAATATTGGGTAGA
1 GAG-AAAACCATAATATTGCGTAGA
2869104 GAGAAAA
1 GAGAAAA
2869111 ACTATGTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.48, C:0.09, G:0.23, T:0.20
Consensus pattern (24 bp):
GAGAAAACCATAATATTGCGTAGA
Found at i:2869093 original size:25 final size:25
Alignment explanation
Indices: 2869065--2869112 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
2869055 GAGAAAACTC
2869065 TAATATTGCGTAGAGAGAAAAACCA
1 TAATATTGCGTAGAGAGAAAAACCA
*
2869090 TAATATTGGGTAGAGAGAAAAAC
1 TAATATTGCGTAGAGAGAAAAAC
2869113 TATGTAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.48, C:0.08, G:0.23, T:0.21
Consensus pattern (25 bp):
TAATATTGCGTAGAGAGAAAAACCA
Found at i:2870150 original size:25 final size:26
Alignment explanation
Indices: 2870105--2870155 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
2870095 CGAAGTGCTA
*
2870105 ATACAAATAAGGTTGTTCCCACCATG
1 ATACAAATAAGGTTGTGCCCACCATG
*
2870131 ATACACATAA-GTTGTGCCCACCATG
1 ATACAAATAAGGTTGTGCCCACCATG
2870156 TGCACTTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAAATAAGGTTGTGCCCACCATG
Found at i:2876186 original size:19 final size:18
Alignment explanation
Indices: 2876143--2876186 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
2876133 AGGATCAAAA
2876143 AAATCATACAATGTGACAT
1 AAAT-ATACAATGTGACAT
*
2876162 ATAATATACAAATGTGACCT
1 A-AATATAC-AATGTGACAT
2876182 AAATA
1 AAATA
2876187 CAAAATTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (18 bp):
AAATATACAATGTGACAT
Found at i:2876979 original size:15 final size:15
Alignment explanation
Indices: 2876958--2876994 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
2876948 TTGTAAACCA
2876958 ACGACTAAATAAGCT
1 ACGACTAAATAAGCT
*
2876973 TCGACTAAATAAGCT
1 ACGACTAAATAAGCT
2876988 ACGACTA
1 ACGACTA
2876995 GTGCCAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.22
Consensus pattern (15 bp):
ACGACTAAATAAGCT
Found at i:2877786 original size:54 final size:54
Alignment explanation
Indices: 2877741--2878221 Score: 646
Period size: 55 Copynumber: 8.9 Consensus size: 54
2877731 TTCGAATGAC
* *
2877741 GGGTCCCTCCCTATTCTTTCAGGGAGTATA-AGACTCGAACAATCTTCAGAAAAT
1 GGGTCGCTCCCTATTCTTTCAGGGAGTATAGA-ACTCGAACAATCTTCTGAAAAT
* * * * *
2877795 GTGTTTGCTCCCTATTC-TTCAGGGAGTATA-AGACTCGAACAATCTTCAGCAAAC
1 G-GGTCGCTCCCTATTCTTTCAGGGAGTATAGA-ACTCGAACAATCTTCTGAAAAT
* * * * *
2877849 GGGTTGCTCCCTATTCTTTCAAGGAGTATAG-ACTCGTACAATCTTCAGCAAAT
1 GGGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
2877902 GGGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
1 GGGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
* *
2877956 GAGTTTGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
1 G-GGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
* * *
2878011 GGGTTCGTTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATTTTCTGAAAAC
1 GGG-TCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
* * **
2878066 GGTTCGCTCCCTATTTTTTCAGGGAGTATAGAACTCGAACAATCTTCAAAAAAT
1 GGGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
*
2878120 GGGCTCGCTCCCTATTCTTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
1 GGG-TCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
* * *
2878175 GGGTTCGCTCCCTATTCTTTCATGGAGTATAGAACTAGAGCAATCTT
1 GGG-TCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTT
2878222 GATTTGCTTC
Statistics
Matches: 382, Mismatches: 38, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
53 63 0.16
54 117 0.31
55 202 0.53
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (54 bp):
GGGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAAT
Found at i:2878092 original size:109 final size:109
Alignment explanation
Indices: 2877747--2878221 Score: 683
Period size: 109 Copynumber: 4.4 Consensus size: 109
2877737 TGACGGGTCC
* *
2877747 CTCCCTATTCTTTCAGGGAGTATA-AGACTCGAACAATCTTCAGAAAATGTGTTTGCTCCCTATT
1 CTCCCTATTCTTTCAGGGAGTATAGA-ACTCGAACAATCTTCAGAAAATGGGTTCGCTCCCTATT
* *
2877811 C-TTCAGGGAGTATA-AGACTCGAACAATCTTCAGCAAACGGGTT-G
65 CTTTCAGGGAGTATAGA-ACTCGAACAATCTTCTGAAAAC-GGTTCG
* * *
2877855 CTCCCTATTCTTTCAAGGAGTATAG-ACTCGTACAATCTTCAGCAAATGGG-TCGCTCCCTATTC
1 CTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCAGAAAATGGGTTCGCTCCCTATTC
* *
2877918 TTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGAGTTTG
66 TTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAACG-GTTCG
* *
2877963 CTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGTTCCCTATTC
1 CTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCAGAAAATGGGTTCGCTCCCTATTC
*
2878028 TTTCAGGGAGTATAGAACTCGAACAATTTTCTGAAAACGGTTCG
66 TTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGTTCG
* * *
2878072 CTCCCTATTTTTTCAGGGAGTATAGAACTCGAACAATCTTCAAAAAATGGGCTCGCTCCCTATTC
1 CTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCAGAAAATGGGTTCGCTCCCTATTC
* *
2878137 TTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCG
66 TTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAA-CGGTTCG
* * *
2878182 CTCCCTATTCTTTCATGGAGTATAGAACTAGAGCAATCTT
1 CTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTT
2878222 GATTTGCTTC
Statistics
Matches: 331, Mismatches: 28, Indels: 14
0.89 0.08 0.04
Matches are distributed among these distances:
106 13 0.04
107 57 0.17
108 49 0.15
109 121 0.37
110 91 0.27
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (109 bp):
CTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCAGAAAATGGGTTCGCTCCCTATTC
TTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGTTCG
Found at i:2878108 original size:164 final size:164
Alignment explanation
Indices: 2877739--2878221 Score: 706
Period size: 164 Copynumber: 3.0 Consensus size: 164
2877729 TCTTCGAATG
* *
2877739 ACGGGTCCCTCCCTATTCTTTCAGGGAGTATA-AGACTCGAACAATCTTCAGAAAATGTGTTTGC
1 ACGGGTCGCTCCCTATTCTTTCAGGGAGTATAGA-ACTCGAACAATCTTCAGAAAATGAGTTTGC
* * *
2877803 TCCCTATTC-TTCAGGGAGTATA-AGACTCGAACAATCTTCAGCAAACGGGTT-GCTCCCTATTC
65 TCCCTATTCTTTCAGGGAGTATAGA-ACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTATTC
* *
2877865 TTTCAAGGAGTATAG-ACTCGTACAATCTTCAGCAA
129 TTTCAAGGAGTATAGAACTCGAACAATCTTCAGAAA
* *
2877900 ATGGGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGAGTTTGCT
1 ACGGGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCAGAAAATGAGTTTGCT
*
2877965 CCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGTTCCCTATTCTT
66 CCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTATTCTT
* * *
2878030 TCAGGGAGTATAGAACTCGAACAATTTTCTGAAA
131 TCAAGGAGTATAGAACTCGAACAATCTTCAGAAA
* * * * * *
2878064 ACGGTTCGCTCCCTATTTTTTCAGGGAGTATAGAACTCGAACAATCTTCAAAAAATGGGCTCGCT
1 ACGGGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCAGAAAATGAGTTTGCT
*
2878129 CCCTATTCTTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTATTCTT
66 CCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTATTCTT
* * *
2878194 TCATGGAGTATAGAACTAGAGCAATCTT
131 TCAAGGAGTATAGAACTCGAACAATCTT
2878222 GATTTGCTTC
Statistics
Matches: 290, Mismatches: 27, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
161 67 0.23
162 38 0.13
163 25 0.09
164 160 0.55
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (164 bp):
ACGGGTCGCTCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCAGAAAATGAGTTTGCT
CCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTATTCTT
TCAAGGAGTATAGAACTCGAACAATCTTCAGAAA
Found at i:2878268 original size:36 final size:37
Alignment explanation
Indices: 2878221--2878305 Score: 120
Period size: 36 Copynumber: 2.3 Consensus size: 37
2878211 AGAGCAATCT
* *
2878221 TGATTTGCTTCACTACTC-TTCTTTGAAGGCTTTAG-A
1 TGATTTGCTTCACTACTCTTTC-ATGAAGGCTTAAGTA
*
2878257 TGATTTGCTTCACTACTCTTTCATGAAGGCTTAAGTT
1 TGATTTGCTTCACTACTCTTTCATGAAGGCTTAAGTA
2878294 TGATTTGCTTCA
1 TGATTTGCTTCA
2878306 AAGTTCAAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 29 0.66
37 15 0.34
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (37 bp):
TGATTTGCTTCACTACTCTTTCATGAAGGCTTAAGTA
Found at i:2879602 original size:9 final size:9
Alignment explanation
Indices: 2879583--2879688 Score: 59
Period size: 9 Copynumber: 12.4 Consensus size: 9
2879573 TATTTTTATT
2879583 TTTTCTTTCA
1 TTTT-TTTCA
2879593 TTTTTTTCA
1 TTTTTTTCA
*
2879602 TTTTTTACA
1 TTTTTTTCA
*
2879611 -TTTTTCCA
1 TTTTTTTCA
*
2879619 -TTTTTCCA
1 TTTTTTTCA
*
2879627 ATTTTTTC-
1 TTTTTTTCA
2879635 -TTTTTT--
1 TTTTTTTCA
2879641 TTTTTTTC-
1 TTTTTTTCA
*
2879649 TTTTTTT-T
1 TTTTTTTCA
2879657 TCTTTTTTCA
1 T-TTTTTTCA
* *
2879667 CTTTTTTCCC
1 -TTTTTTTCA
2879677 TTTTTTTC-
1 TTTTTTTCA
2879685 TTTT
1 TTTT
2879689 CTTCTTCAAG
Statistics
Matches: 82, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
7 12 0.15
8 27 0.33
9 32 0.39
10 10 0.12
11 1 0.01
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:2879605 original size:8 final size:8
Alignment explanation
Indices: 2879588--2879674 Score: 63
Period size: 9 Copynumber: 10.5 Consensus size: 8
2879578 TTATTTTTTC
2879588 TTTCATTTT
1 TTTCA-TTT
2879597 TTTCATTT
1 TTTCATTT
2879605 TTTACATTT
1 TTT-CATTT
*
2879614 TTCCATTT
1 TTTCATTT
*
2879622 TTCCAATTT
1 TTTC-ATTT
2879631 TTTC-TTT
1 TTTCATTT
*
2879638 TTT-TTTT
1 TTTCATTT
*
2879645 TTTCTTTTTT
1 TTTC--ATTT
2879655 TTTC-TTT
1 TTTCATTT
2879662 TTTCACTTT
1 TTTCA-TTT
2879671 TTTC
1 TTTC
2879675 CCTTTTTTTC
Statistics
Matches: 68, Mismatches: 2, Indels: 16
0.79 0.02 0.19
Matches are distributed among these distances:
7 19 0.28
8 15 0.22
9 26 0.38
10 8 0.12
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTCATTT
Found at i:2879614 original size:17 final size:18
Alignment explanation
Indices: 2879594--2879640 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
2879584 TTTCTTTCAT
2879594 TTTTTTCATTTTTTAC-A
1 TTTTTTCATTTTTTACAA
* *
2879611 TTTTTCCA-TTTTTCCAA
1 TTTTTTCATTTTTTACAA
2879628 TTTTTTC-TTTTTT
1 TTTTTTCATTTTTT
2879641 TTTTTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTTCATTTTTTACAA
Found at i:2879641 original size:10 final size:10
Alignment explanation
Indices: 2879628--2879664 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
2879618 ATTTTTCCAA
*
2879628 TTTTTTCTTTT
1 TTTTTT-TTTC
2879639 TTTTTTTTTC
1 TTTTTTTTTC
2879649 TTTTTTTTTC
1 TTTTTTTTTC
2879659 TTTTTT
1 TTTTTT
2879665 CACTTTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 19 0.76
11 6 0.24
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:2879647 original size:14 final size:14
Alignment explanation
Indices: 2879628--2879662 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
2879618 ATTTTTCCAA
2879628 TTTTTTCTTTTTTT
1 TTTTTTCTTTTTTT
2879642 TTTTTTCTTTTTTT
1 TTTTTTCTTTTTTT
2879656 TTCTTTT
1 TT-TTTT
2879663 TTCACTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (14 bp):
TTTTTTCTTTTTTT
Found at i:2879687 original size:8 final size:8
Alignment explanation
Indices: 2879570--2879694 Score: 65
Period size: 8 Copynumber: 14.9 Consensus size: 8
2879560 ACCAATTTTA
*
2879570 TTTTATTT
1 TTTTCTTT
2879578 TTATT-TTT
1 TT-TTCTTT
2879586 TCTTTCATTT
1 T-TTTC-TTT
2879596 TTTTCATTT
1 TTTTC-TTT
* *
2879605 TTTACATT
1 TTTTCTTT
* *
2879613 TTTCCATT
1 TTTTCTTT
* *
2879621 TTTCCAATT
1 TTTTC-TTT
2879630 TTTTCTTT
1 TTTTCTTT
2879638 TTTT-TTT
1 TTTTCTTT
*
2879645 TTTCTTTTT
1 TTT-TCTTT
2879654 TTTTCTTT
1 TTTTCTTT
*
2879662 TTTCACTTT
1 TTT-TCTTT
*
2879671 TTTCCCTTT
1 TTT-TCTTT
2879680 TTTTCTTT
1 TTTTCTTT
*
2879688 TCTTCTT
1 TTTTCTT
2879695 CAAGCAAAAA
Statistics
Matches: 99, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
7 6 0.06
8 46 0.46
9 43 0.43
10 4 0.04
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTCTTT
Found at i:2886887 original size:2 final size:2
Alignment explanation
Indices: 2886880--2886914 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
2886870 AGTTATTTTC
2886880 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2886915 GTTATTATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2897123 original size:22 final size:21
Alignment explanation
Indices: 2897087--2897128 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
2897077 CATCTCCATT
*
2897087 TCATCATCAATACCATCAATA
1 TCATCATCAAGACCATCAATA
2897108 TCATCCATCAAGACCATCAAT
1 TCAT-CATCAAGACCATCAAT
2897129 TCTGCAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.31, G:0.02, T:0.26
Consensus pattern (21 bp):
TCATCATCAAGACCATCAATA
Done.