Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008495.1 Hibiscus syriacus cultivar Beakdansim tig00111338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5120959
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 19 of 21
Found at i:4513682 original size:165 final size:165
Alignment explanation
Indices: 4513205--4515074 Score: 1722
Period size: 165 Copynumber: 11.3 Consensus size: 165
4513195 ATTTGGTTTT
* * * * * * *
4513205 CCTTTGAGCTGAGTGTAATCGAACTCGAAAGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGACTTAAG
* * * *
4513270 CTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTTGAACTTGAAGGTCTTTGTTGGCAGA
65 TTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTC-TT-TTGGCAGA
* * * * *
4513334 TAACCCTTCTAGCCTTGAGTTATGCTACAAATTATGTG
128 TAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * * * ** * *
4513372 CCCTCGAAGCTGAGTGTAATCGAACTCG-AGGGATTT--T-AGCAGATAGCCCTTCTCGACTTAA
1 -CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGA-CAGATAACCCTTCTAGACTTAA
* * ** *
4513433 GTTATGTTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTTAAACTCGAAGGTCTTTGGTTGACA
64 GTTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTC-TT--TTGGCA
* * *
4513497 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATTATATA
126 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * * * *
4513537 CCTTGGAGCT-ACGCATAGTCGAACTCGAAGGTCTTTTCGTGACAGGTAACCCTTCGAGCCTTGA
1 CCTTGGAGCTGA-GCGTAGTCGAACTCGAAGGTC-TTTGGTGACAGATAACCCTTCTAGACTT-A
* * * * *
4513601 A-TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTC-TTTGGCAGA
63 AGTTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGCAGA
* * * * * *
4513664 TAGCCTTTCTCTACTTAAGCTATGTTACAAATGATGTG
128 TAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * * * *
4513702 CCTTGGAGCTGAGCTTAGTCAAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGACTTAAG
* * * *
4513767 TTATGTTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAG
65 TTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGG---CAG
* * * * * * *
4513831 ATAACCCTTTTAGCCTTGAGTTATACTGTAAATGATATG
127 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * * * * * *
4513870 CCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTT--AG-CAGATAGCCCTTCTAGACTTAAG
1 -CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGACTTAAG
* * * *
4513932 TTATGCTGCAAATAATGTG-TCTT--A---GAGCATAGTCGAACTCGAAGGTCTTTGTTGGAAGA
65 TTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTC-TT-TTGGCAGA
* *
4513991 TAACCCTTCTCGACTTAAGTTATGCTGCAAACGATATG
128 TAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * *
4514029 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTGACAGATAACCCTTCTAGACTTAAG
* * * * * * *
4514094 TTATGTTGTAAATGATGTGCCCTTGAAGCTGAGTGCAATCGAACTCGATGGTC-TTTGGAAGATA
65 TTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGCAGATA
* * *
4514158 GCCCTTCTCGACTTAAGCTATGCTACAAATGATGTG
130 ACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * * *
4514194 CCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGTTGGA-AGATAACCCTTCTCGACTTAT
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-T-GACAGATAACCCTTCTAGACTTAA
* * *
4514258 GTTATGCTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCGAATGTCTTTTGGTTACA
64 GTTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGG---CA
* * * * *
4514322 GATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTT
126 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * * * * * *
4514362 CACTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTT-G-G-CAGATAGCCCTTCTCGACTTAAG
1 C-CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGACTTAAG
4514424 TTATGCTGCAAATGATGTG-CCTT-AGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCA
65 TTATGCTGCAAATGATGTGCCCTTGA-AGCTGAGCGTAGTCGAACTCGAAGGTC-TT--TTGGCA
* * *
4514487 GATAACGCTTCTCGACTTAAGTTACGCTGCAAATGATATG
126 GATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * * * *
4514527 CATTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCTAGCCTTGAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTGACAGATAACCCTTCTAGACTTAAG
* * * ** * * *
4514592 TTATGTTGTAAATGGTGTGCCCTCAAAGCTGAGTGTAATCGAACTCG-AGGATC-TTTGGAAGAT
65 TTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGG-TCTTTTGGCAGAT
* * * *
4514655 AGCCCTTCTCGAATTAAGCTATGCTGCAAATAATGTG
129 AACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * *
4514692 TCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGACTTAAG
* * *
4514757 TTATGCTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTGGTGGCAGAT
65 TTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTT-TTGGCAGAT
* * * * *
4514821 AGCCCTTCT-GGCATTGAGTTATGCTGTAAATGATGTA
129 AACCCTTCTCGAC-TTAAGTTATGCTGCAAATGATGTG
* * **
4514858 CCTTGGAGCTGAGCGTAGTCAAACACGAAGGTC-TTGGTGGTAGATAACCCTTCTCA-ACTTAAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCT-AGACTTAAG
* * * ** *
4514921 TTATGCTGCAAATGATATG-CCTTGTAGCTTAGCGTAGTCGAACTCGAAGGTCATGGTGACAGAT
65 TTATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTTGGCAGAT
* * * * * **
4514985 AGCCCTTCTGGCCTTGAGTTATACTATAAATGATGTG
129 AACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * *
4515022 CCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTC-TTGGCTGAAAGACAACCCTT
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTT
4515075 GAGTTATACT
Statistics
Matches: 1401, Mismatches: 243, Indels: 119
0.79 0.14 0.07
Matches are distributed among these distances:
158 28 0.02
159 37 0.03
160 21 0.01
161 2 0.00
162 40 0.03
163 5 0.00
164 361 0.26
165 534 0.38
166 75 0.05
167 7 0.00
168 181 0.13
169 109 0.08
170 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (165 bp):
CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGACTTAAGT
TATGCTGCAAATGATGTGCCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGCAGATAA
CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
Found at i:4513682 original size:249 final size:249
Alignment explanation
Indices: 4513205--4515056 Score: 2575
Period size: 249 Copynumber: 7.5 Consensus size: 249
4513195 ATTTGGTTTT
* * * * * *
4513205 CCTTTGAGCTGAGTGTAATCGAACTCGAAAGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAG
* * * * * *
4513270 CTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTTGAACTTGAAGGTC-TTTGTTGGCAGA
66 TTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGA
** *
4513334 TAACCCTTCTAGCCTTGAGTTATGCTACAAATTATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
131 TAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
* *
4513399 GAGGGAT-TTTAGCAGATAGCCCTTCTCGACTTAAGTTATGTTGCAAATGATGTG
196 GAGGG-TCTTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
**
4513453 CCTTGGAGCTGAGCGTAGTTAAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAG
* * * *
4513518 TTATGCTGCAAATTATATACCTTGGAGCT-ACGCATAGTCGAACTCGAAGGTCTTTTCGTGACAG
66 TTATGCTGCAAATGATATGCCTTGGAGCTGA-GCGTAGTCGAACTCGAAGGTCTTTTGGTGACAG
* * *
4513582 GTAACCCTTCGAGCCTTGAATTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACT
130 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACT
* * * * *
4513647 CGAGGGTCTTTGGCAGATAGCCTTTCTCTACTTAAGCTATGTTACAAATGATGTG
195 CGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * * *
4513702 CCTTGGAGCTGAGCTTAGTCAAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAG
* * *
4513767 TTATGTTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGA
66 TTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGA
* * *
4513832 TAACCCTTTTAGCCTTGAGTTATACTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTC
131 TAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
* * *
4513897 GAGGGTCTTTAGCAGATAGCCCTTCTAGACTTAAGTTATGCTGCAAATAATGTG
196 GAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* *
4513951 TCTT--A---GAGCATAGTCGAACTCGAAGGTCTTT-GTTGGA-AGATAACCCTTCTCGACTTAA
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTT-GACAGATAACCCTTCTCGACTTAA
* *
4514009 GTTATGCTGCAAACGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAG
65 GTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAG
* * *
4514074 ATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTTGAAGCTGAGTGCAATCGAACT
130 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACT
* * * *
4514139 CGATGGTCTTTGGAAGATAGCCCTTCTCGACTTAAGCTATGCTACAAATGATGTG
195 CGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * *
4514194 CCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGTTGGA-AGATAACCCTTCTCGACTTAT
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTT-GACAGATAACCCTTCTCGACTTAA
* *
4514258 GTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAATGTCTTTTGGTTACAG
65 GTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAG
* *
4514323 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTTCACTCGAAGCTGAGTGTAATCGAACT
130 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACT
4514388 CGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
195 CGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * *
4514443 CCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACGCTTCTCGACTTAAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAG
* * * *
4514508 TTACGCTGCAAATGATATGCATTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTTGGTTACAGA
66 TTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGA
* * *
4514573 TAACCCTTCTAGCCTTGAGTTATGTTGTAAATGGTGTGCCCTCAAAGCTGAGTGTAATCGAACTC
131 TAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
* * * * *
4514638 GAGGATCTTTGGAAGATAGCCCTTCTCGAATTAAGCTATGCTGCAAATAATGTG
196 GAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* *
4514692 TCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAG
*
4514757 TTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC--TTGGTGGCAGA
66 TTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGA
* * * * * * * * * *
4514820 TAGCCCTTCTGGCATTGAGTTATGCTGTAAATGATGT-ACCTTGGAGCTGAGCGTAGTCAAACAC
131 TAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
* * * * *
4514884 GAAGGTCTTGGTGGTAGATAACCCTTCTCAACTTAAGTTATGCTGCAAATGATATG
196 GAGGGTCTT--TGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* * * * * * *
4514940 CCTTGTAGCTTAGCGTAGTCGAACTCGAAGGTC-ATGG-TGACAGATAGCCCTTCTGGCCTTGAG
1 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAG
* ** * *
4515003 TTATACTATAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTT
66 TTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
4515057 GGCTGAAAGA
Statistics
Matches: 1432, Mismatches: 156, Indels: 32
0.88 0.10 0.02
Matches are distributed among these distances:
243 196 0.14
244 24 0.02
245 1 0.00
246 94 0.07
247 46 0.03
248 193 0.13
249 877 0.61
250 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (249 bp):
CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAG
TTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGA
TAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC
GAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
Found at i:4514299 original size:741 final size:742
Alignment explanation
Indices: 4513223--4515056 Score: 2671
Period size: 741 Copynumber: 2.5 Consensus size: 742
4513213 CTGAGTGTAA
* * * *
4513223 TCGAACTCGAAAGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATAT
* * *
4513288 GCCTTGGAGCTGAGCGTAGTTGAACTTGAAGGTCTTTGTTGGCAGATAACCCTTCTAGCCTTGAG
66 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGGCAGATAACCCTTCTAGCCTTGAG
** * * * * *
4513353 TTATGCTACAAATTATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGAT-TTTAGCAGATA
131 TTATGCTGTAAATGATGTGCCCTTGAAGCTGAGTGTAATCGAACTCGAAGG-TCTTTGGAAGATA
* *
4513417 GCCCTTCTCGACTTAAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTTAAACTCGAA
195 GCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAA
* *
4513482 GGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATTATATACCTTGGAGCT
260 GGTCTTTGGTTGACAGATAACCCTTCTCGACTT-AGTTATGCTGCAAATGATATGCCTTGGAGCT
* *
4513547 -ACGCATAGTCGAACTCGAAGGTCTTTTCGTGACAGGTAACCCTTCGAGCCTTGAATTATGCTGT
324 GA-GCGTAGTCGAACTCGAAGGTCTTTTCGTGACAGATAACCCTTCGAGCCTTGAATTATGCTGT
* * *
4513611 AAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCTTTCTCT
388 AAATGATGTGCACTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCG
* * *
4513676 ACTTAAGCTATGTTACAAATGATGTGCCTTGGAGCTGAGCTTAGTCAAACTCAAAGGTCTTTGGT
453 ACTTAAGCTATGCTACAAATGATGTGCCTTAGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGT
* * *
4513741 TGGCAGATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATATGCCTTGGAGCTGAGCGTAGTC
518 TGGCAGATAACCCTTCTCGACTTAAGTTACGCTGCAAATGATATGCATTGGAGCTGAGCGTAGTC
*
4513806 GAACTCAAAGGTCTTTTGGTCACAGATAACCCTTTTAGCCTTGAGTTATACTGTAAATGATATGC
583 GAACTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATACTGTAAATGATATGC
* * * * *
4513871 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTAGCAGATAGCCCTTCTAGACTTAAGTTAT
648 CCTCAAAGCTGAGTGTAATCGAACTCGAGGATCTTTAGAAGATAGCCCTTCTAGAATTAAGCTAT
4513936 GCTGCAAATAATGTGTCTT-A-GAGCATAG
713 GCTGCAAATAATGTGTCTTGACGAGCATAG
* *
4513964 TCGAACTCGAAGGTCTTT-GTTGGAAGATAACCCTTCTCGACTTAAGTTATGCTGCAAACGATAT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATAT
**
4514028 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGA
66 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTGGCAGATAACCCTTCTAGCCTTGA
* * *
4514093 GTTATGTTGTAAATGATGTGCCCTTGAAGCTGAGTGCAATCGAACTCGATGGTCTTTGGAAGATA
130 GTTATGCTGTAAATGATGTGCCCTTGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGAAGATA
* * *
4514158 GCCCTTCTCGACTTAAGCTATGCTACAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAA
195 GCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAA
4514223 GGTCTTTGGTTGGA-AGATAACCCTTCTCGACTTATGTTATGCTGCAAATGATATGCCTTGGAGC
260 GGTCTTTGGTT-GACAGATAACCCTTCTCGACTTA-GTTATGCTGCAAATGATATGCCTTGGAGC
* * * * *
4514287 TGAGCGTAGTCGAACTCGAATGTCTTTTGGTTACAGATAACCCTTCTAGCCTTGAGTTATGCTGT
323 TGAGCGTAGTCGAACTCGAAGGTCTTTTCGTGACAGATAACCCTTCGAGCCTTGAATTATGCTGT
*
4514352 AAATGATGTTCACTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCG
388 AAATGATGTGCACTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCG
* * * *
4514417 ACTTAAGTTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGT
453 ACTTAAGCTATGCTACAAATGATGTGCCTTAGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGT
*
4514482 TGGCAGATAACGCTTCTCGACTTAAGTTACGCTGCAAATGATATGCATTGGAGCTGAGCGTAGTC
518 TGGCAGATAACCCTTCTCGACTTAAGTTACGCTGCAAATGATATGCATTGGAGCTGAGCGTAGTC
** * ** * *
4514547 GAACTTGAAGGTCTTTTGGTTACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGGTGTGC
583 GAACTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATACTGTAAATGATATGC
* *
4514612 CCTCAAAGCTGAGTGTAATCGAACTCGAGGATCTTTGGAAGATAGCCCTTCTCGAATTAAGCTAT
648 CCTCAAAGCTGAGTGTAATCGAACTCGAGGATCTTTAGAAGATAGCCCTTCTAGAATTAAGCTAT
*
4514677 GCTGCAAATAATGTGTCTTGGAGCTGAGCGTAG
713 GCTGCAAATAATGTGTCTT-GA-C-GAGCATAG
4514710 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATAT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATAT
* * *
4514775 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTGGTGGCAGATAGCCCTTCTGGCATTGAG
66 GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGGCAGATAACCCTTCTAGCCTTGAG
* * * * * * *
4514839 TTATGCTGTAAATGATGT-ACCTTGGAGCTGAGCGTAGTCAAACACGAAGGTCTTGGTGGTAGAT
131 TTATGCTGTAAATGATGTGCCCTTGAAGCTGAGTGTAATCGAACTCGAAGGTCTT--TGGAAGAT
* * * * * *
4514903 AACCCTTCTCAACTTAAGTTATGCTGCAAATGATATGCCTTGTAGCTTAGCGTAGTCGAACTCGA
194 AGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGA
* * * * * ** *
4514968 AGGTC-ATGG-TGACAGATAGCCCTTCTGGCCTTGAGTTATACTATAAATGATGTGCCTTGGAGC
259 AGGTCTTTGGTTGACAGATAACCCTTCTCGACTT-AGTTATGCTGCAAATGATATGCCTTGGAGC
*
4515031 TGAGCGTAGTCAAACTCGAAGGTCTT
323 TGAGCGTAGTCGAACTCGAAGGTCTT
4515057 GGCTGAAAGA
Statistics
Matches: 977, Mismatches: 101, Indels: 27
0.88 0.09 0.02
Matches are distributed among these distances:
740 75 0.08
741 585 0.60
742 3 0.00
743 3 0.00
744 94 0.10
745 46 0.05
746 93 0.10
747 78 0.08
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (742 bp):
TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATAT
GCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGGCAGATAACCCTTCTAGCCTTGAG
TTATGCTGTAAATGATGTGCCCTTGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGAAGATAG
CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAG
GTCTTTGGTTGACAGATAACCCTTCTCGACTTAGTTATGCTGCAAATGATATGCCTTGGAGCTGA
GCGTAGTCGAACTCGAAGGTCTTTTCGTGACAGATAACCCTTCGAGCCTTGAATTATGCTGTAAA
TGATGTGCACTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACT
TAAGCTATGCTACAAATGATGTGCCTTAGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTGGTTGG
CAGATAACCCTTCTCGACTTAAGTTACGCTGCAAATGATATGCATTGGAGCTGAGCGTAGTCGAA
CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATACTGTAAATGATATGCCCT
CAAAGCTGAGTGTAATCGAACTCGAGGATCTTTAGAAGATAGCCCTTCTAGAATTAAGCTATGCT
GCAAATAATGTGTCTTGACGAGCATAG
Found at i:4516311 original size:83 final size:89
Alignment explanation
Indices: 4516219--4516432 Score: 253
Period size: 95 Copynumber: 2.4 Consensus size: 89
4516209 GGCTAGCTGA
* *
4516219 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGATAGCTC-A-A-TAT-GT-AAA-CA
1 ATCCATAAAGCCAGGGCGTTTAACCAATTGCTCTAGAGGGACAGCTCAATATTATAGTAAAATCA
* *
4516278 CCTTTATCAGGTTAGCTGAATCTT
66 CCTTTATCAGGCTAGCTGAATATT
*
4516302 ATCCATAAAGTCAGGGCGTTTAACCAATTGC-CTTAGAGGGACAGCTCAAGCTTTATTGTATAGT
1 ATCCATAAAGCCAGGGCGTTTAACCAATTGCTC-TAGAGGGACAGCTCAA----TA-T-TATAGT
*
4516366 AAAATTACCTTTATCAGGCTAGCTGAATATT
59 AAAATCACCTTTATCAGGCTAGCTGAATATT
*
4516397 ATCCATAAAACCAGGGCGTTTAACCAATTGCTCTAG
1 ATCCATAAAGCCAGGGCGTTTAACCAATTGCTCTAG
4516433 GACAACTCAA
Statistics
Matches: 109, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
82 1 0.01
83 42 0.39
84 1 0.01
89 1 0.01
92 3 0.03
93 2 0.02
94 3 0.03
95 55 0.50
96 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (89 bp):
ATCCATAAAGCCAGGGCGTTTAACCAATTGCTCTAGAGGGACAGCTCAATATTATAGTAAAATCA
CCTTTATCAGGCTAGCTGAATATT
Found at i:4519203 original size:30 final size:30
Alignment explanation
Indices: 4519169--4519250 Score: 87
Period size: 29 Copynumber: 2.7 Consensus size: 30
4519159 TACAATAAAT
4519169 AAAAAATATAAAAAATAAAGAAAAAGAAG-A
1 AAAAAATATAAAAAATAAA-AAAAAGAAGTA
* * *
4519199 AAAAAATAT-ACAAATAAAACAAATAAGTA
1 AAAAAATATAAAAAATAAAAAAAAGAAGTA
*
4519228 AAATAATAATAAAAAAGTAAAAA
1 AAAAAAT-ATAAAAAA-TAAAAA
4519251 TAATATATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
28 7 0.17
29 15 0.36
30 11 0.26
31 4 0.10
32 5 0.12
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (30 bp):
AAAAAATATAAAAAATAAAAAAAAGAAGTA
Found at i:4519272 original size:40 final size:40
Alignment explanation
Indices: 4519228--4519351 Score: 99
Period size: 42 Copynumber: 2.9 Consensus size: 40
4519218 CAAATAAGTA
4519228 AAATAATAATAAAAAAGTAAAAATAATATATATATATAAT-
1 AAATAATAATAAAAAA-TAAAAATAATATATATATATAATC
* * *
4519268 AAATAAAAACATAAAAAAATAGCAAAT-ATATATATAAATTAATC
1 AAAT-AATA-AT-AAAAAATA-AAAATAATATATATATA-TAATC
* * *
4519312 AAACATATAATAAAAACATATATATATATATATATATATA
1 AAATA-ATAATAAAAA-ATAAAAATA-ATATATATATATA
4519352 TATATATATA
Statistics
Matches: 66, Mismatches: 8, Indels: 17
0.73 0.09 0.19
Matches are distributed among these distances:
40 4 0.06
41 3 0.05
42 22 0.33
43 22 0.33
44 15 0.23
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (40 bp):
AAATAATAATAAAAAATAAAAATAATATATATATATAATC
Found at i:4519316 original size:38 final size:40
Alignment explanation
Indices: 4519252--4519343 Score: 111
Period size: 38 Copynumber: 2.4 Consensus size: 40
4519242 AAGTAAAAAT
4519252 AATATATATATATAATAAATAAAAACATA-AA-AAAATAGCA
1 AATATATATATATAATAAATAAAAACATATAATAAAA-A-CA
* *
4519292 AATATATATATA-AATTAAT-CAAACATATAATAAAAACA
1 AATATATATATATAATAAATAAAAACATATAATAAAAACA
*
4519330 TATATATATATATA
1 AATATATATATATA
4519344 TATATATATA
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
38 20 0.43
39 10 0.22
40 16 0.35
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.30
Consensus pattern (40 bp):
AATATATATATATAATAAATAAAAACATATAATAAAAACA
Found at i:4519336 original size:2 final size:2
Alignment explanation
Indices: 4519329--4519366 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4519319 TAATAAAAAC
4519329 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4519367 GTAATATAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4525841 original size:24 final size:26
Alignment explanation
Indices: 4525814--4525874 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 26
4525804 ATATATATAT
*
4525814 ATAATATTAATA-A-ATTTAATTTAA
1 ATAATATAAATATATATTTAATTTAA
4525838 ATAA-A-AAATATATATTTAATTTAA
1 ATAATATAAATATATATTTAATTTAA
*
4525862 AT-ATATATATATA
1 ATAATATAAATATA
4525875 CCCGGCCCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
22 4 0.13
23 3 0.10
24 18 0.58
25 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATAATATAAATATATATTTAATTTAA
Found at i:4525856 original size:19 final size:19
Alignment explanation
Indices: 4525832--4525871 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
4525822 AATAAATTTA
4525832 ATTTAAATAAAAAATATAT
1 ATTTAAATAAAAAATATAT
* * *
4525851 ATTTAATTTAAATATATAT
1 ATTTAAATAAAAAATATAT
4525870 AT
1 AT
4525872 ATACCCGGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTAAATAAAAAATATAT
Found at i:4530773 original size:111 final size:111
Alignment explanation
Indices: 4530252--4530779 Score: 785
Period size: 111 Copynumber: 4.8 Consensus size: 111
4530242 AAAAATTATC
* * *
4530252 TTGTCATAATGAAATTGGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCTTTTTT
1 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCATTTTT
* *
4530317 ATAAAAGGATAC-ATACTTTCAACATATCAGGTAAATTTCACCGTTT
66 ATAAAAGGAT-CGATACTTTCAACATATCAGGTAAATTTTACCATTT
*
4530363 TTGTCATAATGAAACAT-GTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCCTTTT
1 TTGTCATAATGAAAC-TGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCATTTT
* *
4530427 TATAAAAGGATTGATACTTTCAATATATCAGGTAAATTTTACCATTT
65 TATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTT
* * *
4530474 TTGTCATAATAAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAATTATCTATCCTTTTT
1 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCATTTTT
** *
4530539 ATAAAAGGATATATACTTTCAACATATCAGGTAAATTTTACCCTTT
66 ATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTT
* *
4530585 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAACTATCGATCATTTTT
1 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCATTTTT
*
4530650 ATAAAAAGATCGATACTTTCAACATATCAGGTAAATTTTATCC-TTT
66 ATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTA-CCATTT
* * * **
4530696 TTGTCATAATGAAACTGGTTTTGTTATATTTTTACCTGTTATATTATAAAATATAGATACATTTT
1 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTAT-CATTTT
*
4530761 TAT-AAAGTATCGATACTTT
65 TATAAAAGGATCGATACTTT
4530780 ATAGGCGTTA
Statistics
Matches: 386, Mismatches: 26, Indels: 10
0.91 0.06 0.02
Matches are distributed among these distances:
110 1 0.00
111 373 0.97
112 12 0.03
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.46
Consensus pattern (111 bp):
TTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCATTTTT
ATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTT
Found at i:4531454 original size:110 final size:110
Alignment explanation
Indices: 4531234--4531691 Score: 681
Period size: 110 Copynumber: 4.2 Consensus size: 110
4531224 TTTTTATAAA
* * * * *
4531234 AAAAGTATCTATACTTTCAACATATCAGGTAAATTTTACCAGTTTTATCATAATGAAACTGATTT
1 AAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTTTTGTCATAATGAAACTGGTTT
*
4531299 TGTCATATTTTTATCTGTTATATTGTAAAGTATCTATCTTTTTAT
66 TGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCTTTTTAT
4531344 AAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACC-TTTTTGTCATAATGAAACTGGTTT
1 AAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTTTTGTCATAATGAAACTGGTTT
4531408 TGTCATATTTTTACCTGTTATATTGTAAAGTATCTATACTTTTTAT
66 TGTCATATTTTTACCTGTTATATTGTAAAGTATCTAT-CTTTTTAT
* * * * * *
4531454 AAAATGATCGATACTTTCAATATATTAGGTAAATTTTACCCTTTTTCTCGTAATGAAACTGGTTT
1 AAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTTTTGTCATAATGAAACTGGTTT
*
4531519 T-TCATATTTTTACCTGTTATATTATAAAGTAT-TGATCTTTTTAT
66 TGTCATATTTTTACCTGTTATATTGTAAAGTATCT-ATCTTTTTAT
* * *
4531563 AAAAAAGATCGATACTTTCAACATATCAGGTAAATTTTACCGTTTTTGTCATAATGAAACTAGTT
1 -AAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTTTTGTCATAATGAAACTGGTT
*
4531628 TTGTCATATTTTTACCTGTTATATTGTAAAATATCTATACATTTTTAT
65 TTGTCATATTTTTACCTGTTATATTGTAAAGTATCTAT-C-TTTTTAT
*
4531676 -AAAGTATCGATACTTT
1 AAAAGGATCGATACTTT
4531692 ATAGCGTTAT
Statistics
Matches: 317, Mismatches: 23, Indels: 15
0.89 0.06 0.04
Matches are distributed among these distances:
109 66 0.21
110 174 0.55
111 68 0.21
112 2 0.01
113 7 0.02
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.45
Consensus pattern (110 bp):
AAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTTTTGTCATAATGAAACTGGTTT
TGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCTTTTTAT
Found at i:4532060 original size:911 final size:909
Alignment explanation
Indices: 4530299--4532689 Score: 3757
Period size: 911 Copynumber: 2.6 Consensus size: 909
4530289 GTTATATTGT
* * * *
4530299 AAAGTATCTATCTTTTTTAT-AAAAGGATAC-ATACTTTCAACATATCAGGTAAATTTCACCGTT
1 AAAGTATCAATCCTTTTTATAAAAAGTAT-CTATACTTTCAACATATCAGGTAAATTTTACCG-T
4530362 TTTGTCATAATGAAACATGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCCTTTT
64 TTT-TCATAATGAAAC-TGTTTTGTCATATTTTTA-CTGTTATATTGTAAAGTATCTAT-CTTTT
* * *
4530427 TATAAAAGGATTGATACTTTCAATATATCAGGTAAATTTTACCATTTTTGTCATAATAAAACTGG
125 TATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTTTTGTCATAATGAAACTGG
* **
4530492 TTTTGTCATATTTTTACCTGTTATATTGTAAATTATCTATCCTTTTTATAAAAGGATATATACTT
190 TTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGGATCGATACTT
4530557 TCAACATATCAGGTAAATTTTACCCTTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCT
255 TCAACATATCAGGTAAATTTTACCCTTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCT
*
4530622 GTTATATTGTAAACTATCGATCATTTTTAT-AAAAAGATCGATACTTTCAACATATCAGGTAAAT
320 GTTATATTGTAAA-TATTGATCATTTTTATAAAAAAGATCGATACTTTCAACATATCAGGTAAAT
* * *
4530686 TTTATCC-TTTTTGTCATAATGAAACTGGTTTTGTTATATTTTTACCTGTTATATTATAAAATAT
384 TTTA-CCGTTTTTGTCATAATGAAACTAGTTTTGTCATATTTTTACCTGTTATATTGTAAAATAT
* *
4530750 AGATACATTTTTATAAAGTATCGATACTTTATAGGCGTTATTACTGCTTTTCTTTTAAATTCCAA
448 CGATACATTTTTATAAAGTATCGATACTTTATAGGCGTTATTACTGATTTTCTTTTAAATTCCAA
* *
4530815 AAGTTTCGATACTTATTTAAATAGAATCGATACTTTCAACATATCCGGTAGGTAGTTTAATGTAA
513 AAGTGTCGATACTTATTTAAATGGAATCGATACTTTCAACATATCCGGTAGGTAGTTTAATGTAA
* **
4530880 TAGGTAGGTATTTCACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGATTTAAAATAT
578 TAGGTAGATATTTCACAATGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGATTTAAAATAT
*
4530945 TAATTTAGTAATTATACGCGTCTAATGATTTATTTTTTATGTTACGATATATATTATTATTAAAT
643 TAATTTAGTAATTATACACGTCTAATGATTTATTTTTTATGTTACGATATATATTATTATTAAAT
4531010 TAAAAACAATAAACATAAATATTACATATTTATTATTATCTTTGGTGAAAATTGTTAAATTTAAA
708 TAAAAACAATAAACATAAATATTACATATTTATTATTATCTTTGGTGAAAATTGTTAAATTTAAA
* * * *
4531075 TTCTAAATAATATTTTATAAAGTATCAAAGCAATCATATAATTTTTTGTATAAATGAAATTATTA
773 TTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTATATAAATGAAATTATTA
4531140 AATTAATATTGTAGGTGGAAAACATGAAACACTA-TAAAAAATTTTGAAACATAAATTACATAAC
838 AATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTTTGAAACATAAATTACATAAC
4531204 TTTCAAA
903 TTTCAAA
*
4531211 AAAGTATCGA-CCATTTTTATAAAAAAAGTATCTATACTTTCAACATATCAGGTAAATTTTACCA
1 AAAGTATCAATCC-TTTTTAT--AAAAAGTATCTATACTTTCAACATATCAGGTAAATTTTACC-
4531275 GTTTTATCATAATGAAACTGATTTTGTCATATTTTTATCTGTTATATTGTAAAGTATCTATCTTT
62 GTTTT-TCATAATGAAACTG-TTTTGTCATATTTTTA-CTGTTATATTGTAAAGTATCTATCTTT
4531340 TTATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACC-TTTTTGTCATAATGAAACTG
124 TTATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTTTTGTCATAATGAAACTG
* *
4531404 GTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATACTTTTTATAAAATGATCGATACT
189 GTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGGATCGATACT
* * * *
4531469 TTCAATATATTAGGTAAATTTTACCCTTTTTCTCGTAATGAAACTGGTTTT-TCATATTTTTACC
254 TTCAACATATCAGGTAAATTTTACCCTTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACC
*
4531533 TGTTATATTATAAAGTATTGATC-TTTTTATAAAAAAGATCGATACTTTCAACATATCAGGTAAA
319 TGTTATATTGTAAA-TATTGATCATTTTTATAAAAAAGATCGATACTTTCAACATATCAGGTAAA
4531597 TTTTACCGTTTTTGTCATAATGAAACTAGTTTTGTCATATTTTTACCTGTTATATTGTAAAATAT
383 TTTTACCGTTTTTGTCATAATGAAACTAGTTTTGTCATATTTTTACCTGTTATATTGTAAAATAT
* *
4531662 CTATACATTTTTATAAAGTATCGATACTTTATA-GCGTTATTACTTATTTTCTTTTAAATTCCAA
448 CGATACATTTTTATAAAGTATCGATACTTTATAGGCGTTATTACTGATTTTCTTTTAAATTCCAA
4531726 AAGTGTCGATACTTATTTAAATGGAATCGATACTTTCAACATATCCGGTAGGTAGTTTAATGTAA
513 AAGTGTCGATACTTATTTAAATGGAATCGATACTTTCAACATATCCGGTAGGTAGTTTAATGTAA
* *
4531791 TAGGTAGATATTTCACAATGAAAAATATTAATTTAAGGTTATCTTTTGAGTGAGATTTAAGATAT
578 TAGGTAGATATTTCACAATGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGATTTAAAATAT
4531856 TAATTTAGTAATTATACACGTCTAATGATTTATTTTTTATGTTAC-AGTATATATTATTATTAAA
643 TAATTTAGTAATTATACACGTCTAATGATTTATTTTTTATGTTACGA-TATATATTATTATTAAA
* * * *
4531920 TTAAAAACAATAAACATAGATATTACATATTTGTTATTATCTTTGGTTAAAATTGTTAACTTTAA
707 TTAAAAACAATAAACATAAATATTACATATTTATTATTATCTTTGGTGAAAATTGTTAAATTTAA
* *
4531985 ATTCTAAATAATATTTTATAAAATATCAAAATAATCAAATAATTTTTTATGTAAATGAAATTATT
772 ATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTATATAAATGAAATTATT
* * *
4532050 AAATTAATATTGTAGGTGGAAAACATGAAATACTATTAAAAATTTTTGAAACATAAATTATATAA
837 AAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATTTTGAAACATAAATTACATAA
4532115 CTTTCAAA
902 CTTTCAAA
* *
4532123 AAAGTATTAATCCTTTTTATAAAAAGTATCTATACTTTCAACATAT-AGATAAATTTTA-C----
1 AAAGTATCAATCCTTTTTATAAAAAGTATCTATACTTTCAACATATCAGGTAAATTTTACCGTTT
4532182 --C-----G-----GTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCTTTTTTATA
66 TTCATAATGAAACTGTTTTGTCATATTTTTAC-TGTTATATTGTAAAGTATCTATC-TTTTTATA
** *
4532235 AAAGGATCGATACTTTCAACATATTGGGTAAATTTTACCGTTTTTGTCATAATGAAACTGGTTTT
129 AAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTTTTGTCATAATGAAACTGGTTTT
4532300 GTCATATTTTTACCTGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGGATCGATACTTTCAA
194 GTCATATTTTTACCTGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGGATCGATACTTTCAA
* *
4532365 CATATCA-GTAAATTTTACCGTTTTTGTAATAATGAAACTGGTTTTGTCATATTTTTACCTGTTA
259 CATATCAGGTAAATTTTACCCTTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTA
* * * * *
4532429 TATTGTAAATATCT-ATCATTTTAATAAAAAGGATCGGTACTTTCAACATATTAAGTAAATTTTA
324 TATTGTAAATAT-TGATCATTTTTATAAAAAAGATCGATACTTTCAACATATCAGGTAAATTTTA
* * * *
4532493 TCGGTTTTGTCATAATGAAA-TTGATTTTGTCATATTTTTACATGTTATATTGTAAAATATCGAT
388 CCGTTTTTGTCATAATGAAACTAG-TTTTGTCATATTTTTACCTGTTATATTGTAAAATATCGAT
*
4532557 ACATTTTTATAAAGTATTGATACTTTATAGGCGTTATTACTGATTTTCTTTTAAATTCCAAAAGT
452 ACATTTTTATAAAGTATCGATACTTTATAGGCGTTATTACTGATTTTCTTTTAAATTCCAAAAGT
* * * *
4532622 GTCGATACTTATATAAATGAAATCGAAACTTTCAACATACCCGGTAGGTAGTTTAATGTAATAGG
517 GTCGATACTTATTTAAATGGAATCGATACTTTCAACATATCCGGTAGGTAGTTTAATGTAATAGG
4532687 TAG
582 TAG
4532690 CTCCTATTTT
Statistics
Matches: 1380, Mismatches: 79, Indels: 60
0.91 0.05 0.04
Matches are distributed among these distances:
888 1 0.00
889 39 0.03
890 88 0.06
891 245 0.18
892 98 0.07
895 1 0.00
900 1 0.00
908 1 0.00
909 11 0.01
910 27 0.02
911 377 0.27
912 222 0.16
913 128 0.09
914 49 0.04
915 91 0.07
916 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.43
Consensus pattern (909 bp):
AAAGTATCAATCCTTTTTATAAAAAGTATCTATACTTTCAACATATCAGGTAAATTTTACCGTTT
TTCATAATGAAACTGTTTTGTCATATTTTTACTGTTATATTGTAAAGTATCTATCTTTTTATAAA
AGGATCGATACTTTCAACATATCAGGTAAATTTTACCATTTTTGTCATAATGAAACTGGTTTTGT
CATATTTTTACCTGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGGATCGATACTTTCAACA
TATCAGGTAAATTTTACCCTTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATA
TTGTAAATATTGATCATTTTTATAAAAAAGATCGATACTTTCAACATATCAGGTAAATTTTACCG
TTTTTGTCATAATGAAACTAGTTTTGTCATATTTTTACCTGTTATATTGTAAAATATCGATACAT
TTTTATAAAGTATCGATACTTTATAGGCGTTATTACTGATTTTCTTTTAAATTCCAAAAGTGTCG
ATACTTATTTAAATGGAATCGATACTTTCAACATATCCGGTAGGTAGTTTAATGTAATAGGTAGA
TATTTCACAATGAAAAACATTAATTTAAGGTTATCTTTTGAGTGAGATTTAAAATATTAATTTAG
TAATTATACACGTCTAATGATTTATTTTTTATGTTACGATATATATTATTATTAAATTAAAAACA
ATAAACATAAATATTACATATTTATTATTATCTTTGGTGAAAATTGTTAAATTTAAATTCTAAAT
AATATTTTATAAAATATCAAAACAATCAAATAATTTTTTATATAAATGAAATTATTAAATTAATA
TTGTAGGTGGAAAACATGAAACACTATTAAAAAATTTTGAAACATAAATTACATAACTTTCAAA
Found at i:4532547 original size:111 final size:111
Alignment explanation
Indices: 4532183--4532582 Score: 599
Period size: 111 Copynumber: 3.6 Consensus size: 111
4532173 AAATTTTACC
*
4532183 GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCTTTTTTATAAAAGGATCGATAC
1 GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCATTTTTATAAAAGGATCGATAC
**
4532248 TTTCAACATATTGGGTAAATTTTACCGTTTTTGTCATAATGAAACT
66 TTTCAACATATTAAGTAAATTTTACCGTTTTTGTCATAATGAAACT
* *
4532294 GGTTTTGTCATATTTTTACCTGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGGATCGATAC
1 GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCATTTTTATAAAAGGATCGATAC
* *
4532359 TTTCAACATA-TCAGTAAATTTTACCGTTTTTGTAATAATGAAACT
66 TTTCAACATATTAAGTAAATTTTACCGTTTTTGTCATAATGAAACT
* * *
4532404 GGTTTTGTCATATTTTTACCTGTTATATTGTAAA-TATCTATCATTTTAATAAAAAGGATCGGTA
1 GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCATTTTTAT-AAAAGGATCGATA
* * *
4532468 CTTTCAACATATTAAGTAAATTTTATCGGTTTTGTCATAATGAAATT
65 CTTTCAACATATTAAGTAAATTTTACCGTTTTTGTCATAATGAAACT
* * * * *
4532515 GATTTTGTCATATTTTTACATGTTATATTGTAAAATATCGATACATTTTTAT-AAAGTATTGATA
1 GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTAT-CATTTTTATAAAAGGATCGATA
4532579 CTTT
65 CTTT
4532583 ATAGGCGTTA
Statistics
Matches: 265, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
109 14 0.05
110 89 0.34
111 148 0.56
112 6 0.02
113 8 0.03
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.46
Consensus pattern (111 bp):
GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCATTTTTATAAAAGGATCGATAC
TTTCAACATATTAAGTAAATTTTACCGTTTTTGTCATAATGAAACT
Found at i:4532581 original size:221 final size:221
Alignment explanation
Indices: 4532183--4532582 Score: 624
Period size: 221 Copynumber: 1.8 Consensus size: 221
4532173 AAATTTTACC
* *
4532183 GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCTTTTTTATAAAAGGATCGATAC
1 GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCATTTTAATAAAAGGATCGATAC
** * *
4532248 TTTCAACATATTGGGTAAATTTTACCGTTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTAC
66 TTTCAACATATTAAGTAAATTTTACCGGTTTTGTCATAATGAAACTGATTTTGTCATATTTTTAC
* * * *
4532313 CTGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGGATCGATACTTTCAACATATCAGTAAAT
131 ATGTTATATTGTAAAATATCGATCATTTTTATAAAAGGATCGATACTTTCAACATATCAGTAAAT
4532378 TTTACCGTTTTTGTAATAATGAAACT
196 TTTACCGTTTTTGTAATAATGAAACT
* *
4532404 GGTTTTGTCATATTTTTACCTGTTATATTGTAAA-TATCTATCATTTTAATAAAAAGGATCGGTA
1 GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCATTTTAAT-AAAAGGATCGATA
* *
4532468 CTTTCAACATATTAAGTAAATTTTATCGGTTTTGTCATAATGAAATTGATTTTGTCATATTTTTA
65 CTTTCAACATATTAAGTAAATTTTACCGGTTTTGTCATAATGAAACTGATTTTGTCATATTTTTA
* *
4532533 CATGTTATATTGTAAAATATCGATACATTTTTAT-AAAGTATTGATACTTT
130 CATGTTATATTGTAAAATATCGAT-CATTTTTATAAAAGGATCGATACTTT
4532583 ATAGGCGTTA
Statistics
Matches: 161, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
220 14 0.09
221 139 0.86
222 8 0.05
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.46
Consensus pattern (221 bp):
GGTTTTGTCATATTTTTACATGTTATATTGTAAAGTATCTATCATTTTAATAAAAGGATCGATAC
TTTCAACATATTAAGTAAATTTTACCGGTTTTGTCATAATGAAACTGATTTTGTCATATTTTTAC
ATGTTATATTGTAAAATATCGATCATTTTTATAAAAGGATCGATACTTTCAACATATCAGTAAAT
TTTACCGTTTTTGTAATAATGAAACT
Found at i:4533086 original size:23 final size:23
Alignment explanation
Indices: 4533055--4533115 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
4533045 GTAATTAATT
* *
4533055 TATTTTATTATATAAGCGTTACA
1 TATTATATTATATAAGCGCTACA
*
4533078 TATTATATTATATAAGCGCTACC
1 TATTATATTATATAAGCGCTACA
*
4533101 TATTACATTATATAA
1 TATTATATTATATAA
4533116 CGGTACCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.44
Consensus pattern (23 bp):
TATTATATTATATAAGCGCTACA
Found at i:4533168 original size:109 final size:110
Alignment explanation
Indices: 4532976--4533201 Score: 328
Period size: 109 Copynumber: 2.1 Consensus size: 110
4532966 CCTATTTTAA
* *
4532976 TATATAAACGCTACCTATTACGTTATATAAGCGCTACCTGATATGTTATTGTGCTTAATAATGTT
1 TATATAAACGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTGCTTAATAATGTT
* ** * * *
4533041 TCCAGTAATTAATTTATTTTATTATATAAGCGTTACATATTATAT
66 TACAGTAATTAACCTATTTTATTATAGAAGCGCTACATATTACAT
* * *
4533086 TATATAAGCGCTACCTATTACATTATATAA-CGGTACCTAATATGTTATTGTGCTTGATAATGTT
1 TATATAAACGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTGCTTAATAATGTT
* *
4533150 TATAGTAATTAACCTATTTTATTATAGAAGCGCTACCTATTACAT
66 TACAGTAATTAACCTATTTTATTATAGAAGCGCTACATATTACAT
4533195 TATATAA
1 TATATAA
4533202 CGGTATTTAA
Statistics
Matches: 103, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
109 75 0.73
110 28 0.27
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (110 bp):
TATATAAACGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTGCTTAATAATGTT
TACAGTAATTAACCTATTTTATTATAGAAGCGCTACATATTACAT
Found at i:4539838 original size:29 final size:29
Alignment explanation
Indices: 4539805--4539861 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
4539795 TATTAACATA
4539805 ATATTA-AAAAATA-TAATATTATTTTAATT
1 ATATTATAAAAATATTAA-A-TATTTTAATT
*
4539834 ATATTATAATAATATTAAATATTTTAAT
1 ATATTATAAAAATATTAAATATTTTAAT
4539862 AATTAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 15 0.60
30 7 0.28
31 3 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
ATATTATAAAAATATTAAATATTTTAATT
Found at i:4539889 original size:39 final size:36
Alignment explanation
Indices: 4539795--4539907 Score: 93
Period size: 40 Copynumber: 2.9 Consensus size: 36
4539785 CTTGAGTATA
* * *
4539795 TATTAACATAATATTAAAAAATATAATATT-ATTTTAATT
1 TATTAAAATAATATTAAAATAT-TAA-ATTAATATT--TT
* *
4539834 ATATTATAATAATATTAAATATTTTAATAATTAATATTTT
1 -TATTAAAATAATATTAAA-ATATT-A-AATTAATATTTT
*
4539874 TATTAAAATCATATTAAAATATTAAATTAATATT
1 TATTAAAATAATATTAAAATATTAAATTAATATT
4539908 AAATAAATAA
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
36 10 0.16
37 1 0.02
38 4 0.07
39 16 0.26
40 19 0.31
41 6 0.10
42 5 0.08
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (36 bp):
TATTAAAATAATATTAAAATATTAAATTAATATTTT
Found at i:4539896 original size:19 final size:19
Alignment explanation
Indices: 4539794--4539925 Score: 72
Period size: 19 Copynumber: 6.8 Consensus size: 19
4539784 ACTTGAGTAT
*
4539794 ATATTAACATAATATTAAA
1 ATATTAAAATAATATTAAA
* * * * *
4539813 AAATATAATATTATTTTAATT
1 ATAT-TAAAATAATATTAA-A
*
4539834 ATATTATAATAATATTAAA
1 ATATTAAAATAATATTAAA
* *
4539853 TATTTTAATAATTAATATT--T
1 -ATATTAA-AA-TAATATTAAA
* *
4539873 TTATTAAAATCATATTAAA
1 ATATTAAAATAATATTAAA
*
4539892 ATATTAAATTAATATT-AA
1 ATATTAAAATAATATTAAA
*
4539910 ATAAATAAAATAATAT
1 AT-ATTAAAATAATAT
4539926 ATTTTTGAAT
Statistics
Matches: 82, Mismatches: 23, Indels: 16
0.68 0.19 0.13
Matches are distributed among these distances:
17 6 0.07
18 6 0.07
19 32 0.39
20 26 0.32
21 5 0.06
22 7 0.09
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATTAAAATAATATTAAA
Found at i:4539902 original size:36 final size:39
Alignment explanation
Indices: 4539835--4539907 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
4539825 ATTTTAATTA
* *
4539835 TATTATAATAATATTAAATATTTTAATAATTAATATTTT
1 TATTAAAATAATATTAAATATATTAATAATTAATATTTT
*
4539874 TATTAAAATCATATTAAA-ATATT-A-AATTAATATT
1 TATTAAAATAATATTAAATATATTAATAATTAATATT
4539908 AAATAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 10 0.32
37 1 0.03
38 4 0.13
39 16 0.52
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (39 bp):
TATTAAAATAATATTAAATATATTAATAATTAATATTTT
Found at i:4543150 original size:3 final size:3
Alignment explanation
Indices: 4543142--4543180 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
4543132 TTGTCCGGGA
4543142 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT T-T TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4543181 CTAATAATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:4544319 original size:19 final size:19
Alignment explanation
Indices: 4544295--4544335 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
4544285 CAAAGGACAA
*
4544295 GGGGGTTCATAAGCAAAAG
1 GGGGGTTCACAAGCAAAAG
*
4544314 GGGGGTTCACGAGCAAAAG
1 GGGGGTTCACAAGCAAAAG
4544333 GGG
1 GGG
4544336 AAATTCACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.32, C:0.12, G:0.44, T:0.12
Consensus pattern (19 bp):
GGGGGTTCACAAGCAAAAG
Found at i:4547476 original size:55 final size:54
Alignment explanation
Indices: 4547392--4547530 Score: 170
Period size: 55 Copynumber: 2.5 Consensus size: 54
4547382 GACATTCAAG
* * * * *
4547392 TGATTCATGAAGAATGACGTCCGATGAATGAAGAAATTTGAATCTGATTGAAGAA
1 TGATTCATGAAG-ATGACATCCGATGAATGAAGAAATATGAAACTAATCGAAGAA
*
4547447 TGATTCATGAAGATGGACATCCGATGAATGAAGAAATATGAAACTAATCGAAGAC
1 TGATTCATGAAGAT-GACATCCGATGAATGAAGAAATATGAAACTAATCGAAGAA
* * *
4547502 CGATCCATGAAGAAAGACATCCGATGAAT
1 TGATTCATGAAG-ATGACATCCGATGAAT
4547531 TAAGTTTGAA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
54 2 0.03
55 70 0.96
56 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.23
Consensus pattern (54 bp):
TGATTCATGAAGATGACATCCGATGAATGAAGAAATATGAAACTAATCGAAGAA
Found at i:4547899 original size:6 final size:6
Alignment explanation
Indices: 4547888--4547950 Score: 65
Period size: 6 Copynumber: 10.2 Consensus size: 6
4547878 ATTAACACCT
* * *
4547888 TTTGCA TTTGCA TTTAGCA TTTACA TTTAGAA TTTGTA TTTAGCA TTTGCA
1 TTTGCA TTTGCA TTT-GCA TTTGCA TTT-GCA TTTGCA TTT-GCA TTTGCA
4547939 TTTGCA -TTGCA T
1 TTTGCA TTTGCA T
4547951 GTATTTATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
5 5 0.10
6 28 0.58
7 15 0.31
ACGTcount: A:0.24, C:0.13, G:0.14, T:0.49
Consensus pattern (6 bp):
TTTGCA
Found at i:4547909 original size:13 final size:13
Alignment explanation
Indices: 4547891--4547950 Score: 79
Period size: 13 Copynumber: 4.8 Consensus size: 13
4547881 AACACCTTTT
4547891 GCATTTGCATTTA
1 GCATTTGCATTTA
*
4547904 GCATTTACATTTA
1 GCATTTGCATTTA
* *
4547917 GAATTTGTATTTA
1 GCATTTGCATTTA
4547930 GCATTTGCATTT-
1 GCATTTGCATTTA
4547942 GCA-TTGCAT
1 GCATTTGCAT
4547951 GTATTTATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
11 6 0.15
12 3 0.07
13 32 0.78
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.47
Consensus pattern (13 bp):
GCATTTGCATTTA
Found at i:4552394 original size:54 final size:54
Alignment explanation
Indices: 4552326--4554314 Score: 2095
Period size: 54 Copynumber: 36.7 Consensus size: 54
4552316 AAGAAGTTTT
* * * *
4552326 AGTTCTATACTCCCT-GAAGAAAGAGGGAGCGAACCCATTTAAAGAAGACGTTCG
1 AGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
** * * ** * * *
4552380 AGTTTTATACTCCCTAAAGAAAGAGGGAGCAAACATGTTTGCAGAAGATTTTTG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* * * ** *
4552434 AGTTCTATACTCCCT-GAAGAAAGAGGGAGCGAGCCCATTTTCAGAAGATCATTCG
1 AGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTGAAGAAGAT-GTTCG
* * * * *
4552489 AGTTCTATACTTCCTAAAAGAAAGAGGGAGCGAACCCATTTGTAA-AAGATTATTCG
1 AGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTG-AAGAAGA-TGTTCG
* * ** *
4552545 AGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGTTGAAGATTTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* * ** * *
4552599 AGTTCTATACTCCCT-GAAGAAAGAGGGAGCGAGCCCGTTTTCAGAAGATCATTCA
1 AGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTGAAGAAGAT-GTTCG
* * * *
4552654 AGTTCTATACTTCCTAAAAGAAAGAGGGAGCGAACCCGTTTGTAA-AAGATTATTCG
1 AGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTG-AAGAAGA-TGTTCG
* * ** *
4552710 AGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTCTAGAAGATTTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* * * ** *
4552764 AGTTCTATACTCCCTAAAGAAAGA--GAGCGAGCCCGTTTTCAGAAGATCATTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGAT-GTTCG
* * * * * *
4552817 AGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCTGTTTGCAA-AAGATTATTTG
1 AGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTG-AAGAAGA-TGTTCG
* * * * * * *
4552873 AGTTCTATACTCCCTAAAGAAAGACGGAGCGAATCCGTTTGCAGAAGATTATTCA
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA-TGTTCG
* * * **
4552928 AATTCTATACTCCCTAGAGAAAGAGGCAGCGAACCCGTAAGAAGAAGATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* *
4552982 AGTTCCATACTCCTTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTCCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
*
4553036 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCAGTTTGAAGAAGATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* * * *
4553090 AGTTCCATACTTCCTAGAGAAATAGGGAGCGAACCTGCTTGAAGAAGATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* * * *
4553144 AGTTCTATAATCCCTAAAGAAAGAGGGAGCGAACTCGTTTGAAGAAGATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
** *
4553198 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCTATTTGAAGAAGATGTTTG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* * * *
4553252 AGTTCCATACTCCATAAAGAAAGAGGGAGCAAACCCGTTTGAAGAAGATGTCCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* *
4553306 AGTTCCAT-CTCCCTAGAGAAAGTGGGAGTGAACCCGTTTGAAGAAGATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* ** * *
4553359 AGTTTCATACTCCCTAGAGAAAGAGGGAGCGAACTTGTCTGAAGAAAATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* *
4553413 AGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCTGTTTGAAGAAGATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
*
4553467 AGTTCCATACTCCCTAGAGAAAGAGGGAACGAACCCGTTTGAAGAAGATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
*
4553521 AGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
*
4553575 AGTTCCATACTCCCTA-AGGAAAGAGGGAGCGAACCCATTTGAAGAAGATGTTCG
1 AGTTCCATACTCCCTAGA-GAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* * * *
4553629 TGTTTCATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGAAGAATATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* *
4553683 AGTTCCATACTCCCTAGAGAAAGAGAGAGCGAACCCGTTTGAAGAAGATGTTCA
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* **
4553737 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTAAAGAAGATGCCCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
*
4553791 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACTCGTTTGAAGAAGATG-TCTG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTC-G
* * * *
4553845 AGTTCCATACTCCCTAGAGAAATAGGGAGCAAACCCGTTTGAAGAAAATGTCCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* *
4553899 AGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA-AA-TTGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* * * * *
4553951 AGTTCTATACTCCCTAGAGAAAGAGGGAGAGAACTCTTTTGCAGAAGATGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* * * ** *
4554005 AGTTCCATAATCCCTAGAGAAAGAAGGAGCGAACCCGATTGTTGAAGTTTGTTCG
1 AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAG-ATGTTCG
* * * * * ** **
4554060 AG-TCTTATACTCTCT-GAAAGAATAGGGAGC-AGACACAATTGTTGAAGATTGTTCG
1 AGTTC-CATACTCCCTAGAGA-AAGAGGGAGCGA-ACCCGTTTGAAGAAGA-TGTTCG
** * * * ** * **
4554115 AG-TCTCATACTATCT-GAAGGAATAGGGAG-TAGACATGATTGTTGAAGATTGTTCG
1 AGTTC-CATACTCCCTAG-AGAAAGAGGGAGCGA-ACCCGTTTGAAGAAGA-TGTTCG
* * * * * *
4554170 AG-TCTCATACTCTCT-GAAGGAATAGGGAGC-AGACACGTTTTCAA-AAGAT-TTTG
1 AGTTC-CATACTCCCTAG-AGAAAGAGGGAGCGA-ACCCG-TTTGAAGAAGATGTTCG
* * * *
4554223 AGTTCTATACTCCCT-GAAGAAAGAGGGAGCGAACCCGTTTGCAGAAGATTTTCA
1 AGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
* *
4554277 AGTTCTATACTCCCT-GAAGAAATAGGGAGCGAACCCGT
1 AGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCCGT
4554315 AGGCAAAAGA
Statistics
Matches: 1684, Mismatches: 209, Indels: 84
0.85 0.11 0.04
Matches are distributed among these distances:
52 68 0.04
53 105 0.06
54 1087 0.65
55 292 0.17
56 126 0.07
57 6 0.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (54 bp):
AGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATGTTCG
Found at i:4554380 original size:107 final size:107
Alignment explanation
Indices: 4554104--4554391 Score: 266
Period size: 107 Copynumber: 2.7 Consensus size: 107
4554094 ACAATTGTTG
* **
4554104 AAGATTGTTCGAGTCTCATACTATCTGAAGGAATAGGGAGT-AGACATGATTGTT-GAAGATTGT
1 AAGATTGTT-GAGTTTC-TACTCCCTGAAGGAATAGGGAGTGA-ACATG-TT-TTCGAAGATT-T
* * * ***
4554167 TCGAG-TCTCATACTCTCTGAAGGAATAGGGAGCAGACACGTTTTCAA
60 TCAAGTTCTCATACTCCCTGAAGAAATAGGGAGCAGACACGTAGGCAA
* * * * ** *
4554214 AAGATT-TTGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGCAGAAGATTTTCAA
1 AAGATTGTTGAGTT-TCTACTCCCTGAAGGAATAGGGAGTGAACATGTTTTC-GAAGATTTTCAA
*
4554278 GTTCT-ATACTCCCTGAAGAAATAGGGAGC-GAACCCGTAGGCAA
64 GTTCTCATACTCCCTGAAGAAATAGGGAGCAG-ACACGTAGGCAA
*
4554321 AAGATTGTTGAGTTTCTACTCCCTGAAGGAATAGGGAGTGAACATGTTTTCCGAGGATTTTTCAA
1 AAGATTGTTGAGTTTCTACTCCCTGAAGGAATAGGGAGTGAACATGTTTT-CGAAGA-TTTTCAA
4554386 G-TCTCA
64 GTTCTCA
4554392 CCCCGGGGGA
Statistics
Matches: 143, Mismatches: 25, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
106 2 0.01
107 79 0.55
108 52 0.36
109 4 0.03
110 6 0.04
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (107 bp):
AAGATTGTTGAGTTTCTACTCCCTGAAGGAATAGGGAGTGAACATGTTTTCGAAGATTTTCAAGT
TCTCATACTCCCTGAAGAAATAGGGAGCAGACACGTAGGCAA
Found at i:4554553 original size:3 final size:3
Alignment explanation
Indices: 4554545--4554583 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
4554535 TTGTATGGGA
4554545 TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4554584 ATAATAATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:4555719 original size:19 final size:19
Alignment explanation
Indices: 4555695--4555732 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
4555685 AGGACAAGAA
4555695 GGTTCACGAGCAAAAGGGG
1 GGTTCACGAGCAAAAGGGG
4555714 GGTTCACGAGCAAAAGGGG
1 GGTTCACGAGCAAAAGGGG
4555733 AAATTCACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.42, T:0.11
Consensus pattern (19 bp):
GGTTCACGAGCAAAAGGGG
Found at i:4558850 original size:70 final size:71
Alignment explanation
Indices: 4558744--4558889 Score: 258
Period size: 70 Copynumber: 2.0 Consensus size: 71
4558734 ACTAATATGT
4558744 AACCAACTTCAACCCCCCCCCCCCCAAGTTGGTTGTGGAAAGTATTTTTAACTCCCAAATTGGTA
1 AACCAACTTCAA--CCCCCCCCCCCAAGTTGGTTGTGGAAAGTATTTTTAACTCCCAAATTGGTA
4558809 ATTAAATG
64 ATTAAATG
*
4558817 AACCAACTTCAA-CCCCCCCCCCAAGTTGGTTGTGGAAAGTTTTTTTAACTCCCAAATTGGTAAT
1 AACCAACTTCAACCCCCCCCCCCAAGTTGGTTGTGGAAAGTATTTTTAACTCCCAAATTGGTAAT
4558881 TAAATG
66 TAAATG
4558887 AAC
1 AAC
4558890 ATGTTGTTGA
Statistics
Matches: 72, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
70 60 0.83
73 12 0.17
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (71 bp):
AACCAACTTCAACCCCCCCCCCCAAGTTGGTTGTGGAAAGTATTTTTAACTCCCAAATTGGTAAT
TAAATG
Found at i:4562870 original size:26 final size:26
Alignment explanation
Indices: 4562834--4562886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4562824 TCATTGTGGA
4562834 ATCTTCTAGAAGATCAAGTCAATAAT
1 ATCTTCTAGAAGATCAAGTCAATAAT
* *
4562860 ATCTTCTAGAAGATCCAGTCAGTAAT
1 ATCTTCTAGAAGATCAAGTCAATAAT
4562886 A
1 A
4562887 ATCTAGTAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (26 bp):
ATCTTCTAGAAGATCAAGTCAATAAT
Found at i:4565418 original size:24 final size:21
Alignment explanation
Indices: 4565355--4565422 Score: 55
Period size: 24 Copynumber: 3.0 Consensus size: 21
4565345 CAATTGTGGG
* *
4565355 AATTATCTTTTATGATTTTTAGGG
1 AATTATCTTTGA--ATTTTTA-GA
*
4565379 AATTATCTTTGCATTTATTAGA
1 AATTATCTTTGAATTT-TTAGA
4565401 AATTATCTCTTAGAATTTTTAG
1 AATTATCT-TT-GAATTTTTAG
4565423 GGTTTTAAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
22 13 0.35
23 9 0.24
24 15 0.41
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.51
Consensus pattern (21 bp):
AATTATCTTTGAATTTTTAGA
Found at i:4568905 original size:18 final size:18
Alignment explanation
Indices: 4568878--4568917 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
4568868 TTTCCTATTT
* * *
4568878 TTTCTGATTCACGGTTAA
1 TTTCTAATTCAAGATTAA
4568896 TTTCTAATTCAAGATTAA
1 TTTCTAATTCAAGATTAA
4568914 TTTC
1 TTTC
4568918 CTCAAGTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.47
Consensus pattern (18 bp):
TTTCTAATTCAAGATTAA
Found at i:4577368 original size:13 final size:13
Alignment explanation
Indices: 4577352--4577389 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
4577342 ATGTGAAAAT
4577352 GAATATGAAAGTG
1 GAATATGAAAGTG
4577365 GAATATGAAAGTG
1 GAATATGAAAGTG
*
4577378 AAATATGAAAGT
1 GAATATGAAAGT
4577390 TCTAAAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (13 bp):
GAATATGAAAGTG
Found at i:4584204 original size:24 final size:24
Alignment explanation
Indices: 4584177--4584273 Score: 88
Period size: 24 Copynumber: 4.0 Consensus size: 24
4584167 TAGAAAACAA
*
4584177 AACATAATTCAGATCATATATCAG
1 AACATAATTCAGATCAGATATCAG
* * *
4584201 AACATAATCCAGGTTAGGA-ATCAG
1 AACATAATTCAGATCA-GATATCAG
* * *
4584225 AACAGATTTCAGATCAGATGTCAG
1 AACATAATTCAGATCAGATATCAG
* * *
4584249 AACATAATTCAAATTAGAAATCAG
1 AACATAATTCAGATCAGATATCAG
4584273 A
1 A
4584274 TAAAATATTC
Statistics
Matches: 55, Mismatches: 16, Indels: 4
0.73 0.21 0.05
Matches are distributed among these distances:
23 2 0.04
24 52 0.95
25 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.25
Consensus pattern (24 bp):
AACATAATTCAGATCAGATATCAG
Found at i:4584271 original size:48 final size:48
Alignment explanation
Indices: 4584165--4584273 Score: 128
Period size: 48 Copynumber: 2.3 Consensus size: 48
4584155 AAATAGAGAT
* * * * *
4584165 ATTAGAAAACAAAACATAATTCAGATCATATATCAGAACATAATCCAG
1 ATTAGAAATCAGAACAGAATTCAGATCAGATATCAGAACATAATCCAA
* * * * *
4584213 GTTAGGAATCAGAACAGATTTCAGATCAGATGTCAGAACATAATTCAA
1 ATTAGAAATCAGAACAGAATTCAGATCAGATATCAGAACATAATCCAA
4584261 ATTAGAAATCAGA
1 ATTAGAAATCAGA
4584274 TAAAATATTC
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.48, C:0.15, G:0.14, T:0.24
Consensus pattern (48 bp):
ATTAGAAATCAGAACAGAATTCAGATCAGATATCAGAACATAATCCAA
Found at i:4593941 original size:20 final size:21
Alignment explanation
Indices: 4593912--4593950 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
4593902 CTTTACATAG
*
4593912 TAGTATCGATACCA-TAGGCT
1 TAGTACCGATACCACTAGGCT
4593932 TAGTACCGATACCACTAGG
1 TAGTACCGATACCACTAGG
4593951 ACCAACAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (21 bp):
TAGTACCGATACCACTAGGCT
Found at i:4597279 original size:2 final size:2
Alignment explanation
Indices: 4597272--4597309 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
4597262 TATTGTATGA
4597272 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4597310 AAAAATTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4599014 original size:47 final size:46
Alignment explanation
Indices: 4598843--4599014 Score: 157
Period size: 47 Copynumber: 3.7 Consensus size: 46
4598833 TTTCTTTTGA
* * *
4598843 AAAATGTTTTAAGAGATCTTCTAAAATTAA-CATCTCTTTACTTTTG
1 AAAATATTTTAAGAGATCTTCTAAAATTAATC-TCTCTTTCCTTTAG
* * * * * * * *
4598889 AAAAACATTTTGAGTGATCTTCTGAAATTAATCTATATTTCTTTTTAA
1 -AAAATATTTTAAGAGATCTTCTAAAATTAATCTCTCTTTC-CTTTAG
* * * *
4598937 AAAATATCTTGAGAGATCTTCTGAAATTAATCTCTCCTTCCTTTAG
1 AAAATATTTTAAGAGATCTTCTAAAATTAATCTCTCTTTCCTTTAG
*
4598983 AAAATTTTTCTAAGAGATCTTCTAAAATTAAT
1 AAAATATTT-TAAGAGATCTTCTAAAATTAAT
4599015 ATTTCCTTTC
Statistics
Matches: 99, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 11 0.11
47 84 0.85
48 4 0.04
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.42
Consensus pattern (46 bp):
AAAATATTTTAAGAGATCTTCTAAAATTAATCTCTCTTTCCTTTAG
Found at i:4601185 original size:18 final size:17
Alignment explanation
Indices: 4601162--4601195 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
4601152 AATAAATAAT
4601162 GATAAATAAAAAGTAAAC
1 GATAAATAAAAA-TAAAC
4601180 GATAAATAAAAATAAA
1 GATAAATAAAAATAAA
4601196 ATATGTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.18
Consensus pattern (17 bp):
GATAAATAAAAATAAAC
Found at i:4601401 original size:17 final size:17
Alignment explanation
Indices: 4601362--4601404 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
4601352 ATTATATATG
4601362 TATAATATAAATAATGT
1 TATAATATAAATAATGT
4601379 TAATAATATAAA-AATGT
1 T-ATAATATAAATAATGT
4601396 ATATAATAT
1 -TATAATAT
4601405 TGAAAATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
TATAATATAAATAATGT
Found at i:4602153 original size:43 final size:43
Alignment explanation
Indices: 4601990--4602349 Score: 285
Period size: 43 Copynumber: 8.4 Consensus size: 43
4601980 AAAATTTTAT
* * *
4601990 TTTTTATCTTTGTAGTTGAGG-TCCTTAATTTTTGT-AATCGT-AC
1 TTTTTACCTTTATAATTGAGGCTCC-TAATTTTT-TCAATC-TCAC
* * * *
4602033 TTGTTATCTTTATAATTAAGAC-CCTTAATTTTTTCAATCTCAC
1 TTTTTACCTTTATAATTGAGGCTCC-TAATTTTTTCAATCTCAC
* * * *
4602076 TTTTTTACATTTATAATTGATGAC-CCTAAGTTTTTCAATCCCAC
1 -TTTTTACCTTTATAATTGA-GGCTCCTAATTTTTTCAATCTCAC
* * *
4602120 TTTGTACCTTTATAACTGA-GCTCCTAATTTTTTTCAATATCAC
1 TTTTTACCTTTATAATTGAGGCTCCTAA-TTTTTTCAATCTCAC
* * *
4602163 TTTCTA-CTTTATAATTGAGGCCCCTAATTTTTT-AATATCAC
1 TTTTTACCTTTATAATTGAGGCTCCTAATTTTTTCAATCTCAC
* * * *
4602204 TTTTTTACCTTTATAATTGAGGCCCCTAATTTTTTGAATCCCAT
1 -TTTTTACCTTTATAATTGAGGCTCCTAATTTTTTCAATCTCAC
* * *
4602248 TTTTTA-CTTGTATAATTTAAG-TCCCTAATTTTTTCAATATCAC
1 TTTTTACCTT-TATAATTGAGGCT-CCTAATTTTTTCAATCTCAC
* *
4602291 -TTTTACCTTTA-AAGTTGAGGATCCTAATTTTTTTAATCTCAC
1 TTTTTACCTTTATAA-TTGAGGCTCCTAATTTTTTCAATCTCAC
* *
4602333 CTTTTACCGTTATAATT
1 TTTTTACCTTTATAATT
4602350 AAGATCCCTA
Statistics
Matches: 262, Mismatches: 37, Indels: 36
0.78 0.11 0.11
Matches are distributed among these distances:
41 11 0.04
42 61 0.23
43 147 0.56
44 38 0.15
45 5 0.02
ACGTcount: A:0.25, C:0.18, G:0.08, T:0.49
Consensus pattern (43 bp):
TTTTTACCTTTATAATTGAGGCTCCTAATTTTTTCAATCTCAC
Found at i:4602195 original size:85 final size:85
Alignment explanation
Indices: 4601990--4602365 Score: 329
Period size: 85 Copynumber: 4.4 Consensus size: 85
4601980 AAAATTTTAT
* * * * * *
4601990 TTTTTATCTTTGTAGTTGAGGTCCTTAATTTTTGT-AATCGT-ACTTGTTATCTTTATAATTAAG
1 TTTTTA-CTTTATAATTGAGGTCCCTAATTTTT-TCAAT-ATCACTT-TTACCTTTATAATTGAG
*
4602053 AC-CCTTAA-TTTTTTCAATCTCAC
62 GCTCC-TAATTTTTTTCAATCTCAC
* * * ** *
4602076 TTTTTTACATTTATAATTGATGACCCTAAGTTTTTCAATCCCACTTTGTACCTTTATAACTGA-G
1 -TTTTTAC-TTTATAATTGAGGTCCCTAATTTTTTCAATATCACTTT-TACCTTTATAATTGAGG
*
4602140 CTCCTAATTTTTTTCAATATCAC
63 CTCCTAATTTTTTTCAATCTCAC
* *
4602163 TTTCTACTTTATAATTGAGGCCCCTAATTTTTT-AATATCACTTTTTTACCTTTATAATTGAGGC
1 TTTTTACTTTATAATTGAGGTCCCTAATTTTTTCAATATCAC--TTTTACCTTTATAATTGAGGC
* * * *
4602227 CCCTAA-TTTTTTGAATCCCAT
64 TCCTAATTTTTTTCAATCTCAC
* * *
4602248 TTTTTACTTGTATAATTTAAGTCCCTAATTTTTTCAATATCACTTTTACCTTTA-AAGTTGAGGA
1 TTTTTACTT-TATAATTGAGGTCCCTAATTTTTTCAATATCACTTTTACCTTTATAA-TTGAGGC
4602312 TCCTAATTTTTTT-AATCTCAC
64 TCCTAATTTTTTTCAATCTCAC
* * * *
4602333 CTTTTACCGTTATAATTAAGATCCCTAATTTTT
1 TTTTTA-CTTTATAATTGAGGTCCCTAATTTTT
4602366 CAAACATACT
Statistics
Matches: 237, Mismatches: 38, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
84 8 0.03
85 109 0.46
86 52 0.22
87 68 0.29
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.48
Consensus pattern (85 bp):
TTTTTACTTTATAATTGAGGTCCCTAATTTTTTCAATATCACTTTTACCTTTATAATTGAGGCTC
CTAATTTTTTTCAATCTCAC
Found at i:4602205 original size:128 final size:127
Alignment explanation
Indices: 4602031--4602368 Score: 366
Period size: 128 Copynumber: 2.6 Consensus size: 127
4602021 TTGTAATCGT
* * * * *
4602031 ACTTGTTATCTTTATAATTAAGACCCTTAATTTTTTCAATCTCACTTTTTTACATTTATAATTGA
1 ACTT-TTACCTTTATAATTGAGGCCCCTAATTTTTT-AATCTCACTTTTTTACCTTTATAATTGA
* *
4602096 TGACCCTAAGTTTTTCAATCCCACTTTGTACCTT-TATAA-CTGAG-CTCCTAATTTTTTTCAAT
64 AGACCCTAA-TTTTTCAATCCCACTTTGTA-CTTGTATAATCTAAGTC-CCTAA-TTTTTTCAAT
4602158 ATC
125 ATC
* *
4602161 ACTTTCTA-CTTTATAATTGAGGCCCCTAATTTTTTAATATCACTTTTTTACCTTTATAATTGAG
1 ACTTT-TACCTTTATAATTGAGGCCCCTAATTTTTTAATCTCACTTTTTTACCTTTATAATTGAA
* * * * *
4602225 GCCCCTAATTTTTTGAATCCCATTTTTTACTTGTATAATTTAAGTCCCTAATTTTTTCAATATC
65 GACCCTAA-TTTTTCAATCCCACTTTGTACTTGTATAATCTAAGTCCCTAATTTTTTCAATATC
** * *
4602289 ACTTTTACCTTTA-AAGTTGAGGATCCTAATTTTTTTAATCTCAC-CTTTTACCGTTATAATT-A
1 ACTTTTACCTTTATAA-TTGAGGCCCCTAA-TTTTTTAATCTCACTTTTTTACCTTTATAATTGA
4602351 AGATCCCTAATTTTTCAA
64 AGA-CCCTAATTTTTCAA
4602369 ACATACTTTT
Statistics
Matches: 179, Mismatches: 21, Indels: 19
0.82 0.10 0.09
Matches are distributed among these distances:
127 16 0.09
128 110 0.61
129 46 0.26
130 7 0.04
ACGTcount: A:0.27, C:0.19, G:0.07, T:0.47
Consensus pattern (127 bp):
ACTTTTACCTTTATAATTGAGGCCCCTAATTTTTTAATCTCACTTTTTTACCTTTATAATTGAAG
ACCCTAATTTTTCAATCCCACTTTGTACTTGTATAATCTAAGTCCCTAATTTTTTCAATATC
Found at i:4610535 original size:22 final size:22
Alignment explanation
Indices: 4610504--4610546 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
4610494 AACAACACAA
4610504 CTTGCGAGATCACGAACCAAAT
1 CTTGCGAGATCACGAACCAAAT
*
4610526 CTTGCTAGATCACGAACCAAA
1 CTTGCGAGATCACGAACCAAA
4610547 ATTACTGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.28, G:0.16, T:0.19
Consensus pattern (22 bp):
CTTGCGAGATCACGAACCAAAT
Found at i:4611837 original size:3 final size:3
Alignment explanation
Indices: 4611829--4611917 Score: 76
Period size: 3 Copynumber: 30.3 Consensus size: 3
4611819 TTCTTCCCGC
* * * *
4611829 TAT TAT TAT TAT TAT TA- TAT TAT TAT TAG TAT TAG TGT TAG TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
4611876 TAT AAT TAT TAT TAT TGT TAGT T-T T-T TAA TAT TAT TTT TAT T
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T
4611918 TATTTTACAG
Statistics
Matches: 67, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
2 6 0.09
3 59 0.88
4 2 0.03
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:4619928 original size:51 final size:49
Alignment explanation
Indices: 4619812--4619928 Score: 146
Period size: 49 Copynumber: 2.3 Consensus size: 49
4619802 GCAGTTTACC
* * * *
4619812 CTTTTTTATTTTATTAACTTACACCGATTTAAGTATGTATCAAGTGCTA
1 CTTTTTTATTTTATTCACTTACACCGATGTAAGCACGTATCAAGTGCTA
* *
4619861 CTTTTTTATTTTATTCACTTACACC-AGTGTAAGCACGTGTTAAGTGCTACA
1 CTTTTTTATTTTATTCACTTACACCGA-TGTAAGCACGTATCAAGTGCT--A
4619912 CTTTTTTATTTTATTCA
1 CTTTTTTATTTTATTCA
4619929 TTTTCACATA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
48 1 0.02
49 40 0.68
51 18 0.31
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.48
Consensus pattern (49 bp):
CTTTTTTATTTTATTCACTTACACCGATGTAAGCACGTATCAAGTGCTA
Found at i:4619953 original size:51 final size:49
Alignment explanation
Indices: 4619812--4619946 Score: 137
Period size: 49 Copynumber: 2.7 Consensus size: 49
4619802 GCAGTTTACC
* * * * * * *
4619812 CTTTTTTATTTTATTAACTTACACCGATTTAAGTATGTATCAAGTGCTA
1 CTTTTTTATTTTATTCACTTACACCAATATAAGCACGTGTTAAGTGCTA
* *
4619861 CTTTTTTATTTTATTCACTTACACCAGTGTAAGCACGTGTTAAGTGCTACA
1 CTTTTTTATTTTATTCACTTACACCAATATAAGCACGTGTTAAGTGCT--A
* *
4619912 CTTTTTTATTTTATTCATTTTCA-CATATATAAGCA
1 CTTTTTTATTTTATTCACTTACACCA-ATATAAGCA
4619947 TTTGTTAGTG
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
49 40 0.56
50 2 0.03
51 29 0.41
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.47
Consensus pattern (49 bp):
CTTTTTTATTTTATTCACTTACACCAATATAAGCACGTGTTAAGTGCTA
Found at i:4620565 original size:20 final size:21
Alignment explanation
Indices: 4620527--4620565 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
4620517 AAAACCAAAA
*
4620527 CAATTTACAAAAGTAGATACC
1 CAATTTACAAAACTAGATACC
*
4620548 CAATTTA-AAAACTCGATA
1 CAATTTACAAAACTAGATA
4620566 AACAAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.49, C:0.18, G:0.08, T:0.26
Consensus pattern (21 bp):
CAATTTACAAAACTAGATACC
Found at i:4630745 original size:18 final size:17
Alignment explanation
Indices: 4630716--4630754 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
4630706 TCTAATATAT
*
4630716 TTATATATTTATATTTG
1 TTATATATTTATATTTA
4630733 TTATATCATTTATATTTA
1 TTATAT-ATTTATATTTA
4630751 TTAT
1 TTAT
4630755 TAATATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (17 bp):
TTATATATTTATATTTA
Found at i:4630847 original size:10 final size:11
Alignment explanation
Indices: 4630823--4630853 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
4630813 GGCATCATAT
4630823 CATATTTTATA
1 CATATTTTATA
4630834 CATATTTT-TA
1 CATATTTTATA
4630844 CATATTTTAT
1 CATATTTTAT
4630854 TTTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (11 bp):
CATATTTTATA
Found at i:4639049 original size:28 final size:26
Alignment explanation
Indices: 4639004--4639077 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 26
4638994 TTACACTTCG
* *
4639004 AGGGTATTTTAGTCATTTTTACCTCAT
1 AGGGTATTTTAGT-AATTTTACCCCAT
4639031 AAGGGTATTTTCA-TAATTTTACCCCAT
1 -AGGGTATTTT-AGTAATTTTACCCCAT
*
4639058 AGGGCTATTTTTGGTAATTT
1 AGGG-TA-TTTTAGTAATTT
4639078 CTTCTCAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
26 4 0.10
27 13 0.33
28 21 0.54
29 1 0.03
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.46
Consensus pattern (26 bp):
AGGGTATTTTAGTAATTTTACCCCAT
Found at i:4639682 original size:23 final size:23
Alignment explanation
Indices: 4639627--4639697 Score: 72
Period size: 23 Copynumber: 3.1 Consensus size: 23
4639617 TCAAATTTAA
* * *
4639627 AGTCAACGGTCATACCGATTAA-
1 AGTCAACAGTCAGACCGATCAAC
* * * *
4639649 AGCCAACAGTCTGATCGGTCAAC
1 AGTCAACAGTCAGACCGATCAAC
4639672 AGTCAACAGTCAGACCGATCAAC
1 AGTCAACAGTCAGACCGATCAAC
4639695 AGT
1 AGT
4639698 TCGAGTCATG
Statistics
Matches: 37, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
22 15 0.41
23 22 0.59
ACGTcount: A:0.35, C:0.27, G:0.20, T:0.18
Consensus pattern (23 bp):
AGTCAACAGTCAGACCGATCAAC
Found at i:4648271 original size:54 final size:53
Alignment explanation
Indices: 4648212--4648432 Score: 189
Period size: 54 Copynumber: 4.1 Consensus size: 53
4648202 CAAACAAAGA
*
4648212 GATAT-TTTCAAAAGAATTTTTAAAGGAACTAAGCATGATTTTCAAGGGTTTCTT
1 GATATATTTCAAAAGAATTTTT-AAGAAACTAAGC-TGATTTTCAAGGGTTTCTT
* * *
4648266 GATAT-TTTCAAATGAGTTTTT-AGAAACTAAGTCTGATTTTCAGGGGTTTCTT
1 GATATATTTCAAAAGAATTTTTAAGAAACTAAG-CTGATTTTCAAGGGTTTCTT
* * * * * *
4648318 GAT-TATTTCCAAAGAAGTTTTAGAGAAACTAAACCTAATTTTTAGGGGTTTCTT
1 GATATATTTCAAAAGAATTTTTA-AGAAACT-AAGCTGATTTTCAAGGGTTTCTT
* ** * *
4648372 AATGATAACTGAAAACGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTT
1 GAT-ATATTTCAAAA-G-AA-TTTTTAAGAAACTAAGC-TGATTTTCAAGGGTTTCTT
4648430 GAT
1 GAT
4648433 TAGTAAGTCC
Statistics
Matches: 134, Mismatches: 22, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
51 1 0.01
52 42 0.31
53 1 0.01
54 46 0.34
55 2 0.01
56 6 0.04
57 4 0.03
58 27 0.20
59 5 0.04
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (53 bp):
GATATATTTCAAAAGAATTTTTAAGAAACTAAGCTGATTTTCAAGGGTTTCTT
Found at i:4648774 original size:59 final size:59
Alignment explanation
Indices: 4648701--4648831 Score: 147
Period size: 59 Copynumber: 2.2 Consensus size: 59
4648691 ACGAAAAAGT
* * * * * *
4648701 CCCCACCAGAGGGGTTAACA-TTTCCTTCACTCGATTCACGGCATTTTGAATCAGTGATG
1 CCCCACTAGAGGGGTTAA-ATTTTCATTCACTCAATTCACGACATTTTGAATCAGCGATA
** *
4648760 CCCCACTAGAGGGGTTAAATTTTCATTTGCTCAATTCATGACATTTTGAATCAGCGATA
1 CCCCACTAGAGGGGTTAAATTTTCATTCACTCAATTCACGACATTTTGAATCAGCGATA
* *
4648819 CCTCACTTGAGGG
1 CCCCACTAGAGGG
4648832 ATCAATATCT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
58 1 0.02
59 59 0.98
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (59 bp):
CCCCACTAGAGGGGTTAAATTTTCATTCACTCAATTCACGACATTTTGAATCAGCGATA
Found at i:4648900 original size:37 final size:36
Alignment explanation
Indices: 4648837--4648923 Score: 111
Period size: 37 Copynumber: 2.3 Consensus size: 36
4648827 GAGGGATCAA
* *
4648837 TATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTT
1 TATCTCGCTT--GATAGTTTCACTCGAAACAAAACA-TT
*
4648876 TATCTCGCTTGATAGTTTCTCTCGAAACAAAACATT
1 TATCTCGCTTGATAGTTTCACTCGAAACAAAACATT
*
4648912 TATCTCACTTGA
1 TATCTCGCTTGA
4648924 GATTATTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 13 0.30
37 21 0.48
39 10 0.23
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (36 bp):
TATCTCGCTTGATAGTTTCACTCGAAACAAAACATT
Found at i:4649054 original size:59 final size:59
Alignment explanation
Indices: 4648949--4649062 Score: 158
Period size: 59 Copynumber: 1.9 Consensus size: 59
4648939 AACTAAAAAT
* *
4648949 GCCCCACTAGAGGGGTTAACATTTCCTTCACTCAATTCATAGCATTTTGAATCAGTGAC
1 GCCCCACTAGAGGGGTTAACATTTCCTTCACTCAATTCAGAGCATTTCGAATCAGTGAC
* ** *
4649008 GCCCCACTAGAGGGGTTAACTTTTCCTTTGCTCGATTCACGA-CATTTCGAATCAG
1 GCCCCACTAGAGGGGTTAACATTTCCTTCACTCAATTCA-GAGCATTTCGAATCAG
4649063 CGATTCCTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
59 47 0.98
60 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (59 bp):
GCCCCACTAGAGGGGTTAACATTTCCTTCACTCAATTCAGAGCATTTCGAATCAGTGAC
Found at i:4649075 original size:249 final size:249
Alignment explanation
Indices: 4648626--4649179 Score: 797
Period size: 249 Copynumber: 2.2 Consensus size: 249
4648616 AGGGATCAAC
** * *
4648626 ATCTCGCTTGAGATAGTTTCACTCGAAACAAATGATTTATCTCACTTTAGATTGTTTTTCCTAAA
1 ATCTCGCTT--GATAGTTTCACTCGAAACAAAACATTTATCTCACTTGAGATTATTTTTCCTAAA
* *
4648691 ACGAAAAAGTCCCCACCAGAGGGGTTAACATTTCCTTCACTCGATTCACGGCATTTTGAATCAGT
64 ACGAAAAAGTCCCCACCAGAGGGGTTAACATTTCCTTCACTCAATTCACAGCATTTTGAATCAGT
* * *
4648756 GATGCCCCACTAGAGGGGTTAAATTTTCATTTGCTCAATTCATGACATTTTGAATCAGCGATACC
129 GACGCCCCACTAGAGGGGTTAAATTTTCATTTGCTCAATTCACGACATTTCGAATCAGCGATACC
* *
4648821 TCACTTGAGGGATCAATATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTT
194 TCACTTGAGGGATCAACATCTCGCTTGAGATAATTTCACTCGAAACAGAAGATTTT
* *
4648877 ATCTCGCTTGATAGTTTCTCTCGAAACAAAACATTTATCTCACTTGAGATTATTTTTCTTAAAAC
1 ATCTCGCTTGATAGTTTCACTCGAAACAAAACATTTATCTCACTTGAGATTATTTTTCCTAAAAC
* * *
4648942 TAAAAA-TGCCCCACTAGAGGGGTTAACATTTCCTTCACTCAATTCATAGCATTTTGAATCAGTG
66 GAAAAAGT-CCCCACCAGAGGGGTTAACATTTCCTTCACTCAATTCACAGCATTTTGAATCAGTG
* * * *
4649006 ACGCCCCACTAGAGGGGTTAACTTTTCCTTTGCTCGATTCACGACATTTCGAATCAGCGATTCCT
130 ACGCCCCACTAGAGGGGTTAAATTTTCATTTGCTCAATTCACGACATTTCGAATCAGCGATACCT
*
4649071 CACTTGAGGGATCAACATCTCGCTTGAGATAATTTCACTTGAAACAGAAGATTTT
195 CACTTGAGGGATCAACATCTCGCTTGAGATAATTTCACTCGAAACAGAAGATTTT
* * * *
4649126 ATCCCGCTTGAGATGGTGTCACTCGAAACAGAAGA-ATTTTATCTCGCTTGAGAT
1 ATCTCGCTT--GATAGTTTCACTCGAAACA-AA-ACA-TTTATCTCACTTGAGAT
4649180 AGTTTCACTC
Statistics
Matches: 271, Mismatches: 26, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
248 1 0.00
249 225 0.83
251 25 0.09
252 3 0.01
253 17 0.06
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (249 bp):
ATCTCGCTTGATAGTTTCACTCGAAACAAAACATTTATCTCACTTGAGATTATTTTTCCTAAAAC
GAAAAAGTCCCCACCAGAGGGGTTAACATTTCCTTCACTCAATTCACAGCATTTTGAATCAGTGA
CGCCCCACTAGAGGGGTTAAATTTTCATTTGCTCAATTCACGACATTTCGAATCAGCGATACCTC
ACTTGAGGGATCAACATCTCGCTTGAGATAATTTCACTCGAAACAGAAGATTTT
Found at i:4649137 original size:39 final size:39
Alignment explanation
Indices: 4649087--4649258 Score: 254
Period size: 39 Copynumber: 4.4 Consensus size: 39
4649077 AGGGATCAAC
* *
4649087 ATCTCGCTTGAGATAATTTCACTTGAAACAGAAGATTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTT
* * *
4649126 ATCCCGCTTGAGATGGTGTCACTCGAAACAGAAGAATTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAG-ATTTT
*
4649166 ATCTCGCTTGAGATAGTTTCACTCGAAACAAAAGATTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTT
* * *
4649205 ATCTAGCATGAGATGGTTTCACTCGAAACAGAAGATTTT
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTT
4649244 ATCTCGCTTGAGATA
1 ATCTCGCTTGAGATA
4649259 TTGAGTTAAT
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 81 0.70
40 35 0.30
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (39 bp):
ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTT
Found at i:4649218 original size:79 final size:78
Alignment explanation
Indices: 4649087--4649258 Score: 272
Period size: 79 Copynumber: 2.2 Consensus size: 78
4649077 AGGGATCAAC
* * * *
4649087 ATCTCGCTTGAGATAATTTCACTTGAAACAGAAGATTTTATCCCGCTTGAGATGGTGTCACTCGA
1 ATCTCGCTTGAGATAATTTCACTCGAAACAAAAGATTTTATCCAGCATGAGATGGTGTCACTCGA
4649152 AACAGAAGAATTTT
66 AACAGAAG-ATTTT
* * *
4649166 ATCTCGCTTGAGATAGTTTCACTCGAAACAAAAGATTTTATCTAGCATGAGATGGTTTCACTCGA
1 ATCTCGCTTGAGATAATTTCACTCGAAACAAAAGATTTTATCCAGCATGAGATGGTGTCACTCGA
4649231 AACAGAAGATTTT
66 AACAGAAGATTTT
4649244 ATCTCGCTTGAGATA
1 ATCTCGCTTGAGATA
4649259 TTGAGTTAAT
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
78 20 0.23
79 66 0.77
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (78 bp):
ATCTCGCTTGAGATAATTTCACTCGAAACAAAAGATTTTATCCAGCATGAGATGGTGTCACTCGA
AACAGAAGATTTT
Found at i:4650088 original size:20 final size:20
Alignment explanation
Indices: 4650052--4650089 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4650042 CAATTTATTC
*
4650052 ATTGGTGCATCGATGCATGG
1 ATTGGTGCATAGATGCATGG
*
4650072 ATTGGTGCATAGGTGCAT
1 ATTGGTGCATAGATGCAT
4650090 CCCTTTGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.13, G:0.34, T:0.32
Consensus pattern (20 bp):
ATTGGTGCATAGATGCATGG
Found at i:4658716 original size:65 final size:63
Alignment explanation
Indices: 4658574--4658730 Score: 192
Period size: 65 Copynumber: 2.5 Consensus size: 63
4658564 TGCACTAAGT
* * * *
4658574 GTGCATCGATGCATAAAATGCATTCGATG--TTTTGAAGCCTAAGTGCATCGATGCATGGGGT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTTTAAAACCTAAGTGCATCGATGCATGGAGA
* * *
4658635 GTGCATTGATGCATAAAATGCATTTGATGTTTTCATTAAAACCTGAGTGCATCGATGCATGGAGA
1 GTGCATCGATGCATAAAATGCATTCGATGTTTT--TTAAAACCTAAGTGCATCGATGCATGGAGA
* * *
4658700 GTGCATCGATGTATAAACTACATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
4658731 CAATTTATTC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
61 27 0.34
63 2 0.03
65 51 0.64
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (63 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTTTAAAACCTAAGTGCATCGATGCATGGAGA
Found at i:4658766 original size:20 final size:20
Alignment explanation
Indices: 4658741--4658778 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4658731 CAATTTATTC
4658741 ATTGGTGCATCGATGCATGG
1 ATTGGTGCATCGATGCATGG
*
4658761 ATTGGTGCATCGGTGCAT
1 ATTGGTGCATCGATGCAT
4658779 CCCTTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (20 bp):
ATTGGTGCATCGATGCATGG
Found at i:4659104 original size:38 final size:39
Alignment explanation
Indices: 4659027--4659107 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 39
4659017 TATTTTCAAC
* * * *
4659027 AGATAGTTTCACTCGAAATAGAAGATTTTATCTCGCTTG
1 AGATAATTTCACTCGAAACAGAAGATTTTATATCACTTG
*
4659066 AGATAATTTCACTCGAAACGGAAGA-TTTATATCACTTG
1 AGATAATTTCACTCGAAACAGAAGATTTTATATCACTTG
4659104 AGAT
1 AGAT
4659108 TGTTTTTCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
38 15 0.41
39 22 0.59
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (39 bp):
AGATAATTTCACTCGAAACAGAAGATTTTATATCACTTG
Found at i:4660875 original size:29 final size:30
Alignment explanation
Indices: 4660817--4660875 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 30
4660807 TACTATTAAC
* * *
4660817 TTTTATTTTCTTGCATTTTAGCCACTGTTT
1 TTTTATTTTCATGCAATTTAGCCACGGTTT
4660847 TTTTATTTT-ATGCAATTTA-CTCACGGTTT
1 TTTTATTTTCATGCAATTTAGC-CACGGTTT
4660876 ATCTTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
28 1 0.04
29 15 0.60
30 9 0.36
ACGTcount: A:0.17, C:0.15, G:0.10, T:0.58
Consensus pattern (30 bp):
TTTTATTTTCATGCAATTTAGCCACGGTTT
Found at i:4661925 original size:15 final size:15
Alignment explanation
Indices: 4661905--4661934 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
4661895 ACGGAGTCCC
4661905 AATCGCACCTTAAAT
1 AATCGCACCTTAAAT
4661920 AATCGCACCTTAAAT
1 AATCGCACCTTAAAT
4661935 GATTGGTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (15 bp):
AATCGCACCTTAAAT
Found at i:4664088 original size:139 final size:139
Alignment explanation
Indices: 4663823--4664100 Score: 414
Period size: 139 Copynumber: 2.0 Consensus size: 139
4663813 TTTGACTCAT
* * *
4663823 AGTCATGATCCTCCAACCAGATCGGTTTCAAAATATCATTGAATTGTGGGTGTTCATTCCATGCA
1 AGTCAAGATCCTCCAACCAGATCGATTTCAAAATATCACTGAATTGTGGGTGTTCATTCCATGCA
* * *
4663888 GTAATAAATCAAAAAGGACACTGAGCAGAATGCATAACTTGTGACGTACAACGAAATAGAATCAG
66 GTAATAAATCAAAAAGGACACTGACCAGAATGCATAACTTGTGACATACAACGAAACAGAATCAG
4663953 TCTGTGATC
131 TCTGTGATC
*
4663962 AGTCAAGATCCTCCAACCAGATCGATTTCTAGAA-ATCACTGAATTGTGGGTGTTCATTCCATGC
1 AGTCAAGATCCTCCAACCAGATCGATTTC-AAAATATCACTGAATTGTGGGTGTTCATTCCATGC
* * ** * * *
4664026 GGTAATAAATCGAAAAGGACTTTGACCAGAATGCATAACTTGTGACATACTATGAAACAGAATCG
65 AGTAATAAATCAAAAAGGACACTGACCAGAATGCATAACTTGTGACATACAACGAAACAGAATCA
4664091 GTCTGTGATC
130 GTCTGTGATC
4664101 TGACCCAAAC
Statistics
Matches: 124, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
139 121 0.98
140 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (139 bp):
AGTCAAGATCCTCCAACCAGATCGATTTCAAAATATCACTGAATTGTGGGTGTTCATTCCATGCA
GTAATAAATCAAAAAGGACACTGACCAGAATGCATAACTTGTGACATACAACGAAACAGAATCAG
TCTGTGATC
Found at i:4667567 original size:110 final size:110
Alignment explanation
Indices: 4667358--4667579 Score: 331
Period size: 110 Copynumber: 2.0 Consensus size: 110
4667348 CTATGCGTAC
* * * * *
4667358 AAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGTACTGTGTGTGCAAAACTAAGGA
1 AAACTAAGAAATACATAATAAGTTTATGAAATTCCGTATGAGCACTGTGTGTGCAAAACTAAGAA
* *
4667423 ATTCATAATAAGTTTATGAATTTCTGTATGGGCACTGTGTGTGCA
66 ATTCATAATAAGTTTATGAATTTCTGTATGGGCACTATGGGTGCA
*
4667468 AAACTAAGAAATACATAATAAGTTTATGAAATTCTGTATGAGCACTGTGTGTGCAAAACTAAGAA
1 AAACTAAGAAATACATAATAAGTTTATGAAATTCCGTATGAGCACTGTGTGTGCAAAACTAAGAA
*
4667533 ATTCATAATAAGTTTATGTATTATC-GTACT-GGCACTATGGGTGCA
66 ATTCATAATAAGTTTATGAATT-TCTGTA-TGGGCACTATGGGTGCA
4667578 AA
1 AA
4667580 CTATAAAATT
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
110 98 0.97
111 3 0.03
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (110 bp):
AAACTAAGAAATACATAATAAGTTTATGAAATTCCGTATGAGCACTGTGTGTGCAAAACTAAGAA
ATTCATAATAAGTTTATGAATTTCTGTATGGGCACTATGGGTGCA
Found at i:4667579 original size:55 final size:55
Alignment explanation
Indices: 4667358--4667550 Score: 332
Period size: 55 Copynumber: 3.5 Consensus size: 55
4667348 CTATGCGTAC
* *
4667358 AAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGTACTGTGTGTGCA
1 AAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATGGGCACTGTGTGTGCA
*
4667413 AAACTAAGGAATTCATAATAAGTTTATGAATTTCTGTATGGGCACTGTGTGTGCA
1 AAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATGGGCACTGTGTGTGCA
* * *
4667468 AAACTAAGAAATACATAATAAGTTTATGAAATTCTGTATGAGCACTGTGTGTGCA
1 AAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATGGGCACTGTGTGTGCA
4667523 AAACTAAGAAATTCATAATAAGTTTATG
1 AAACTAAGAAATTCATAATAAGTTTATG
4667551 TATTATCGTA
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 130 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (55 bp):
AAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATGGGCACTGTGTGTGCA
Found at i:4668394 original size:81 final size:81
Alignment explanation
Indices: 4667654--4668389 Score: 1006
Period size: 81 Copynumber: 9.1 Consensus size: 81
4667644 TGTTCTAAAA
* * * * *
4667654 TAAAATATTAATGGCCTAGCTATGCATTTGACAGAAATGTGTCAATTATGCCAATTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4667719 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * * * * *
4667735 TCAAAGATTAATGGCCTAGCTGTACATTTGAAAGAAATGTGTCAATTATGCCAGTTAGATGGAAT
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4667800 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * * * *
4667816 TAAAATATTAATGGCCTAGTTGTGCATTTGACATAAATGTGTCAATTATGCCAATTAGAAGAAAA
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4667881 GTTAAATACCTTTGAC
66 GTTAAATACCTTTGAG
* * *
4667897 TAAAAGATTAATGGCCTTGTTGTGCATTTGACAGAAAGGTGTCAAATATGTCAGTTAGAT-AAAT
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAA-
4667961 GGTTAAATACCTTTGAG
65 GGTTAAATACCTTTGAG
* * * * *
4667978 TAAATGATTAATGGCCTAGCTATCCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4668043 GTTAAATACATTTGAG
66 GTTAAATACCTTTGAG
* * *
4668059 TAAAAGAGTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCTAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* * *
4668124 TTTAAATATCTTTTAG
66 GTTAAATACCTTTGAG
* * * *
4668140 TAAAAGATTAATGGCCTAGTTGTGCATTTGATAGAAATGTGTAAATTATGCCAGCTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4668205 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
4668221 TAAAAGATTAATAGCCTAGTTGTGCATTTGACAGAAAGATGTCAATTATACCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4668286 GTTAAATACCTTTTAG
66 GTTAAATACCTTTGAG
* ** * * * *
4668302 TAAAAGACTAAAAGCCTAATTGTGCCTTTGACAGAAAGGTGTCAATCATGCCAATTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4668367 GTTAAATACCTTTGGG
66 GTTAAATACCTTTGAG
4668383 TAAAAGA
1 TAAAAGA
4668390 CTAAATTTCT
Statistics
Matches: 577, Mismatches: 76, Indels: 4
0.88 0.12 0.01
Matches are distributed among these distances:
80 3 0.01
81 571 0.99
82 3 0.01
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (81 bp):
TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:4668548 original size:2 final size:2
Alignment explanation
Indices: 4668541--4668575 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4668531 CCATAAATGA
4668541 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4668576 ACATTGCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4672576 original size:55 final size:55
Alignment explanation
Indices: 4672504--4672658 Score: 199
Period size: 55 Copynumber: 2.8 Consensus size: 55
4672494 TACCAAATGA
*
4672504 CACTATG-CGTGC-AAACTAAGAAATTCATAATAAGTTTATGAATT-TATGTATGGG
1 CACTATGTC-TGCAAAACTAAGAAATTCATAATAAGTTTATGAATTAT-TGTATGCG
* * *
4672558 CATTATGTCTGCAAAACTAAGAAATGCATAACAAGTTTATGAATTATTGTATGCG
1 CACTATGTCTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTATTGTATGCG
* * * *
4672613 CACTGTGTGTGGAAAACTAAGAAATTCATAATAAGTTTATGTATTA
1 CACTATGTCTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTA
4672659 CCGTATTGGC
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
54 9 0.10
55 77 0.89
56 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (55 bp):
CACTATGTCTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTATTGTATGCG
Found at i:4672848 original size:81 final size:81
Alignment explanation
Indices: 4672757--4673548 Score: 964
Period size: 81 Copynumber: 9.8 Consensus size: 81
4672747 TGTTCTAAAA
* * * *
4672757 TAAAATATTAATGGCCTAGCTGTGCATTTAATAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4672822 GTTAAATACATTTGAG
66 GTTAAATACCTTTGAG
* * * *
4672838 TAAAATATTAATGGCCTAGTTGTGCATTTGAAATAAAGGTGTCAATTATGTCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4672903 GTTAAATACCTTTAAG
66 GTTAAATACCTTTGAG
* * ** * **
4672919 TAAAATATT-ATGGCCTAGTTGTGCATTTGATAGAAAGGTACCAATTTTTTCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4672983 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
4672999 TAAAAGAATTAATGACCTAGTTGTGCATTTGACAGAAAGGTGTCAAATATGTCAGTTAGATGAAA
1 TAAAAG-ATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAA
4673064 GGTTAAATACCTTTGAG
65 GGTTAAATACCTTTGAG
* * * * * *
4673081 TAAAAGATTAATGGCCTAGCTATGTATTTGACAAAAAGGTGTCAATTATGCTAGTTAGATGAAAT
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4673146 GTTAAATACATTTGAG
66 GTTAAATACCTTTGAG
* * *
4673162 TAAAAGAGTAATGGCCTAGTTTTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4673227 GTTAAATAGCTTTGAG
66 GTTAAATACCTTTGAG
* * * * *
4673243 TAAAAGATTAATGGCCTAGCTATGAATTTGATAGAAAGATGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4673308 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * *
4673324 TAAAAGATTAATGGCCTAGTTGTGCATTTGATAGAAAGATGTCAATTATGGCAGTTAGATAAAAG
1 TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4673389 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* *** ** * * * * *
4673405 TAAAAGACTAAAAACCTAACTGTGCCTTTTG-CAGAAAGGTGTTAATCATACCAATTAGATGAAA
1 TAAAAGATTAATGGCCTAGTTGTG-CATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAA
*
4673469 AGTTAAATACCTTT-AGG
65 GGTTAAATACCTTTGA-G
* * * * * * * *
4673486 TAAAAGACTAAAT-GTCTAATGGTGCATTTTG-CAGAAAGATGTCAATAATGCAAGTTGGATGAA
1 TAAAAGA-TTAATGGCCTAGTTGTGCA-TTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
4673549 GGACTAATTG
Statistics
Matches: 619, Mismatches: 86, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
80 71 0.11
81 471 0.76
82 77 0.12
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (81 bp):
TAAAAGATTAATGGCCTAGTTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:4675404 original size:22 final size:22
Alignment explanation
Indices: 4675376--4675447 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
4675366 TCATTGGGGT
4675376 AGTATCGATACCCACCTATAGG
1 AGTATCGATACCCACCTATAGG
4675398 AGTATCGAT----A--T-TGAGG
1 AGTATCGATACCCACCTAT-AGG
4675414 TAGTATCGATACCCACCTATAGG
1 -AGTATCGATACCCACCTATAGG
4675437 AGTATCGATAC
1 AGTATCGATAC
4675448 TATAGGAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 18
0.69 0.00 0.31
Matches are distributed among these distances:
15 1 0.02
16 4 0.10
17 9 0.22
18 1 0.02
21 1 0.02
22 20 0.49
23 4 0.10
24 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (22 bp):
AGTATCGATACCCACCTATAGG
Found at i:4675416 original size:39 final size:39
Alignment explanation
Indices: 4675368--4675446 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
4675358 TTTTGGTATC
*
4675368 ATTGGGGTAGTATCGATACCCACCTATAGGAGTATCGAT
1 ATTGAGGTAGTATCGATACCCACCTATAGGAGTATCGAT
4675407 ATTGAGGTAGTATCGATACCCACCTATAGGAGTATCGAT
1 ATTGAGGTAGTATCGATACCCACCTATAGGAGTATCGAT
4675446 A
1 A
4675447 CTATAGGAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (39 bp):
ATTGAGGTAGTATCGATACCCACCTATAGGAGTATCGAT
Found at i:4675452 original size:17 final size:17
Alignment explanation
Indices: 4675391--4675454 Score: 51
Period size: 17 Copynumber: 3.5 Consensus size: 17
4675381 CGATACCCAC
4675391 CTATAGGAGTATCGATA
1 CTATAGGAGTATCGATA
4675408 -T-TGAGGTAGTATCGATACCCA
1 CTAT-AGG-AGTATCGAT----A
4675429 CCTATAGGAGTATCGATA
1 -CTATAGGAGTATCGATA
4675447 CTATAGGA
1 CTATAGGA
4675455 ATGGATGGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 18
0.68 0.00 0.32
Matches are distributed among these distances:
15 1 0.03
16 4 0.11
17 17 0.45
18 1 0.03
21 1 0.03
22 9 0.24
23 4 0.11
24 1 0.03
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (17 bp):
CTATAGGAGTATCGATA
Found at i:4686016 original size:24 final size:24
Alignment explanation
Indices: 4685963--4686018 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
4685953 TCCATATCAG
*
4685963 AAATCAGAACAGAATTCAGGTCAT
1 AAATCAGAACAGAATTCAAGTCAT
**
4685987 GTATCAGAACAGAATTCAAGTCGA-
1 AAATCAGAACAGAATTCAAGTC-AT
4686011 AAATCAGA
1 AAATCAGA
4686019 TAAAAATTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 25 0.96
25 1 0.04
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (24 bp):
AAATCAGAACAGAATTCAAGTCAT
Found at i:4687388 original size:365 final size:361
Alignment explanation
Indices: 4686724--4687438 Score: 1328
Period size: 365 Copynumber: 2.0 Consensus size: 361
4686714 TCTTATACTG
4686724 ATGCGATCCAGAGTTGAACTAAGTTGAATACTTCCAAAATTTATCATCGAGTCAACTTAAGAAGA
1 ATGCGATCCAGAGTTGAACTAAGTTGAATACTTCCAAAATTTATCATCGAGTCAACTTAAGAAGA
4686789 CGAACACGCATTCAAGTAATATCTATGCCATCAGGTATTGACTAGCTTTAGGGTTAATCTACTCA
66 CGAACACGCATTCAAGTAATATCTATGCCATCAGGTATTGACTAGCTTTAGGGTTAATCTACTCA
4686854 CTTAAATTGTGTTCCATTCTTTTAAAGGTAGGACAATACCTATGTTATTTGGATTCCTTATTAAT
131 CTTAAATTGTGTTCCATTCTTTTAAAGGTAGGACAATACCTATGTTATTTGGATTCCTTATTAAT
4686919 CTAAGGCATTTACTTGGTATAGGTCATGAGGGTTATTTTGGTAATTTGGTGTTCAGTTTTATTCC
196 CTAAGGCATTTACTTGGTATAGGTCATGAGGGTTATTTTGGTAATTTGGTGTTCAGTTTTATTCC
*
4686984 ATTCATTTCAGAGCTCGATGATGTCCAATCATTCCTGAGCTTGGTG-ATTCTTAGGTCCTTTCCA
261 ATTCATTTCAGAGCTCGATGATGTCCAATCATTCCTGAGCTTGGTGAATTCTTAGGTCATTTCCA
4687048 TTACAGGGGTA-TTTTGTCATTTTTCTTAGTATTGA
326 TTACAGGGGTATTTTTGTCATTTTTCTTAGTATTGA
4687083 ATGCGATCCAGAGTTGAACTAAGTTGAATACTTCCAAAATTTATCATCGAGTCAAACTTAAGAAG
1 ATGCGATCCAGAGTTGAACTAAGTTGAATACTTCCAAAATTTATCATCGAGTC-AACTTAAGAAG
4687148 ACGAACACGCATTCAAGTAATATCTATGCCATTCAGGTATTGACATAGCTTTAGGGTTAATCTAC
65 ACGAACACGCATTCAAGTAATATCTATGCCA-TCAGGTATTGAC-TAGCTTTAGGGTTAATCTAC
4687213 TCACTTAAATTGTGTTCCATTACTTTTAAAGGTAGGACAATACCTATGCTTATTTGGATTCCTTA
128 TCACTTAAATTGTGTTCCATT-CTTTTAAAGGTAGGACAATACCTATG-TTATTTGGATTCCTT-
4687278 ATTAATCTAAGGCATTTACTTGGTATAGGTCATGAGGG-TATTTTGGTAATTTTGGTGTTCAGTT
190 ATTAATCTAAGGCATTTACTTGGTATAGGTCATGAGGGTTATTTTGGTAA-TTTGGTGTTCAGTT
4687342 TTATTCCATTCATTTCAGAGCTCGATGATGTCCAATCATTCCTGAGCTTGGTGATATTCTTAGGT
254 TTATTCCATTCATTTCAGAGCTCGATGATGTCCAATCATTCCTGAGCTTGGTGA-ATTCTTAGGT
4687407 CATTTCCATTACAGGGGTATTTTTGTCATTTT
318 CATTTCCATTACAGGGGTATTTTTGTCATTTT
4687439 ATAGATCTAC
Statistics
Matches: 345, Mismatches: 1, Indels: 11
0.97 0.00 0.03
Matches are distributed among these distances:
359 53 0.15
360 42 0.12
361 12 0.03
362 41 0.12
363 26 0.08
364 26 0.08
365 105 0.30
367 28 0.08
368 12 0.03
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.38
Consensus pattern (361 bp):
ATGCGATCCAGAGTTGAACTAAGTTGAATACTTCCAAAATTTATCATCGAGTCAACTTAAGAAGA
CGAACACGCATTCAAGTAATATCTATGCCATCAGGTATTGACTAGCTTTAGGGTTAATCTACTCA
CTTAAATTGTGTTCCATTCTTTTAAAGGTAGGACAATACCTATGTTATTTGGATTCCTTATTAAT
CTAAGGCATTTACTTGGTATAGGTCATGAGGGTTATTTTGGTAATTTGGTGTTCAGTTTTATTCC
ATTCATTTCAGAGCTCGATGATGTCCAATCATTCCTGAGCTTGGTGAATTCTTAGGTCATTTCCA
TTACAGGGGTATTTTTGTCATTTTTCTTAGTATTGA
Found at i:4688598 original size:28 final size:29
Alignment explanation
Indices: 4688532--4688657 Score: 164
Period size: 29 Copynumber: 4.3 Consensus size: 29
4688522 ATTTTACATA
* *
4688532 AATAGCACCCAAACAGAATTTAATTCCCAG
1 AATAGCACCAAAACCGAA-TTAATTCCCAG
*
4688562 AATAGCACCAAAATCGAATTAATT-CCAG
1 AATAGCACCAAAACCGAATTAATTCCCAG
*
4688590 AATAGCACCAAAACCGAATTACTTCCCAG
1 AATAGCACCAAAACCGAATTAATTCCCAG
* * * *
4688619 AATAGCACCAAAACCGAATTATTTACTAA
1 AATAGCACCAAAACCGAATTAATTCCCAG
4688648 AATAGCACCA
1 AATAGCACCA
4688658 GTTTCGAATT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 26 0.30
29 45 0.52
30 15 0.17
ACGTcount: A:0.45, C:0.25, G:0.10, T:0.20
Consensus pattern (29 bp):
AATAGCACCAAAACCGAATTAATTCCCAG
Found at i:4688616 original size:57 final size:59
Alignment explanation
Indices: 4688531--4688657 Score: 177
Period size: 57 Copynumber: 2.2 Consensus size: 59
4688521 AATTTTACAT
* *
4688531 AAATAGCACCCAAACAGAATTTAATTCCCAGAATAGCACCAAAATCGAATTAATT-CCA
1 AAATAGCACCAAAACAGAATTTAATTCCCAGAATAGCACCAAAACCGAATTAATTACCA
* * * * *
4688589 GAATAGCACCAAAACCGAA-TTACTTCCCAGAATAGCACCAAAACCGAATTATTTACTA
1 AAATAGCACCAAAACAGAATTTAATTCCCAGAATAGCACCAAAACCGAATTAATTACCA
4688647 AAATAGCACCA
1 AAATAGCACCA
4688658 GTTTCGAATT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 32 0.53
58 28 0.47
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (59 bp):
AAATAGCACCAAAACAGAATTTAATTCCCAGAATAGCACCAAAACCGAATTAATTACCA
Found at i:4690713 original size:24 final size:24
Alignment explanation
Indices: 4690650--4690719 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
4690640 TTAAACGGAG
* **
4690650 ATATCAGAAATCAAAACAGAATTT
1 ATATCAGAAATCAGAACAGAATCC
* * * * *
4690674 AGAACATATATTAGAACAGAATCC
1 ATATCAGAAATCAGAACAGAATCC
4690698 ATATCAGAAATCAGAACAGAAT
1 ATATCAGAAATCAGAACAGAAT
4690720 TCAGGTCATG
Statistics
Matches: 33, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.53, C:0.14, G:0.11, T:0.21
Consensus pattern (24 bp):
ATATCAGAAATCAGAACAGAATCC
Found at i:4690758 original size:24 final size:24
Alignment explanation
Indices: 4690686--4690760 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
4690676 AACATATATT
* *
4690686 AGAACAGAATCCATA-TCAGAAATC
1 AGAACAGAATTCA-AGTCATAAATC
* **
4690710 AGAACAGAATTCAGGTCATGTATC
1 AGAACAGAATTCAAGTCATAAATC
4690734 AGAACAGAATTCAAGTCGA-AAATC
1 AGAACAGAATTCAAGTC-ATAAATC
4690758 AGA
1 AGA
4690761 TAAAATAATT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
24 40 0.98
25 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (24 bp):
AGAACAGAATTCAAGTCATAAATC
Found at i:4690760 original size:48 final size:48
Alignment explanation
Indices: 4690650--4690743 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
4690640 TTAAACGGAG
* * *
4690650 ATATCAGAAATCAAAACAGAATTTAGAACATATATTAGAACAGAATCC
1 ATATCAGAAATCAGAACAGAATTCAGAACATATATCAGAACAGAATCC
** *
4690698 ATATCAGAAATCAGAACAGAATTCAGGTCATGTATCAGAACAGAAT
1 ATATCAGAAATCAGAACAGAATTCAGAACATATATCAGAACAGAAT
4690744 TCAAGTCGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.49, C:0.15, G:0.14, T:0.22
Consensus pattern (48 bp):
ATATCAGAAATCAGAACAGAATTCAGAACATATATCAGAACAGAATCC
Found at i:4692969 original size:29 final size:29
Alignment explanation
Indices: 4692917--4693043 Score: 121
Period size: 29 Copynumber: 4.4 Consensus size: 29
4692907 AATTTTATAC
* *
4692917 AAATAGCACCCAAACAAAATTTAATTCCCA
1 AAATAGCACCAAAACTAAA-TTAATTCCCA
* * *
4692947 GAATAGCACCAAAATTAAATTAATT-ACA
1 AAATAGCACCAAAACTAAATTAATTCCCA
* * *
4692975 AAATAGCACCAAAATTGAATTAATTCCTA
1 AAATAGCACCAAAACTAAATTAATTCCCA
* * * * *
4693004 GAATAGCAACAAAACTGAATTATTTACCA
1 AAATAGCACCAAAACTAAATTAATTCCCA
4693033 AAATAGCACCA
1 AAATAGCACCA
4693044 GTTTCGAATT
Statistics
Matches: 79, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
28 25 0.32
29 39 0.49
30 15 0.19
ACGTcount: A:0.50, C:0.20, G:0.07, T:0.23
Consensus pattern (29 bp):
AAATAGCACCAAAACTAAATTAATTCCCA
Found at i:4694375 original size:18 final size:18
Alignment explanation
Indices: 4694352--4694388 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
4694342 AACATGAGTT
4694352 TGGTAGAGATTCCTGACG
1 TGGTAGAGATTCCTGACG
*
4694370 TGGTAGAGATTCTTGACG
1 TGGTAGAGATTCCTGACG
4694388 T
1 T
4694389 AGCATCACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.14, G:0.32, T:0.32
Consensus pattern (18 bp):
TGGTAGAGATTCCTGACG
Found at i:4695578 original size:2 final size:2
Alignment explanation
Indices: 4695571--4695620 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
4695561 ATTGGTTAGA
4695571 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4695613 AT AT AT AT
1 AT AT AT AT
4695621 TACTTTTTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4701536 original size:27 final size:27
Alignment explanation
Indices: 4701506--4701558 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
4701496 CAATCTATCT
* * *
4701506 TCATCAGCATCAACATCACCATCACCC
1 TCATCAACATCAACACCACCACCACCC
*
4701533 TCATCAACATCATCACCACCACCACC
1 TCATCAACATCAACACCACCACCACC
4701559 ACCACCATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.34, C:0.47, G:0.02, T:0.17
Consensus pattern (27 bp):
TCATCAACATCAACACCACCACCACCC
Found at i:4701552 original size:21 final size:21
Alignment explanation
Indices: 4701513--4701552 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
4701503 TCTTCATCAG
*
4701513 CATCAACATCACCATCACCCT
1 CATCAACATCACCACCACCCT
*
4701534 CATCAACATCATCACCACC
1 CATCAACATCACCACCACC
4701553 ACCACCACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.17
Consensus pattern (21 bp):
CATCAACATCACCACCACCCT
Found at i:4704498 original size:20 final size:21
Alignment explanation
Indices: 4704469--4704521 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
4704459 CTCTTCAAGG
4704469 AGTATCGATACTC-G-GGGTCT
1 AGTATCGATACTCTGAGGGT-T
* *
4704489 AGTATTGATAATCTGAGGGTT
1 AGTATCGATACTCTGAGGGTT
4704510 AGTATCGATACT
1 AGTATCGATACT
4704522 GAGGCATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 11 0.41
21 12 0.44
22 4 0.15
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (21 bp):
AGTATCGATACTCTGAGGGTT
Found at i:4712284 original size:4 final size:4
Alignment explanation
Indices: 4712275--4712357 Score: 67
Period size: 4 Copynumber: 20.0 Consensus size: 4
4712265 TACACCTCTT
** * * ** *
4712275 TAAA TAAA TAAA TAAA TTATT TGAAA TATA TAAA TAAA TGAA TATG GAAA
1 TAAA TAAA TAAA TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA
*
4712325 TAAA TAAA TAAT TAAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA T-AAA TAAA TAAA TAAA TAAA
4712358 ATTACCTTCG
Statistics
Matches: 60, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
4 53 0.88
5 7 0.12
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (4 bp):
TAAA
Found at i:4712344 original size:17 final size:17
Alignment explanation
Indices: 4712275--4712359 Score: 68
Period size: 17 Copynumber: 5.1 Consensus size: 17
4712265 TACACCTCTT
*
4712275 TAAATAAATAAATAAAT
1 TAAATAAATAAATAAAA
** *
4712292 TATTTGAAATATAT-AAA
1 TAAAT-AAATAAATAAAA
* *
4712309 TAAATGAAT--ATGGAAA
1 TAAATAAATAAAT-AAAA
*
4712325 TAAATAAATAATTAAAA
1 TAAATAAATAAATAAAA
4712342 TAAATAAATAAATAAAA
1 TAAATAAATAAATAAAA
4712359 T
1 T
4712360 TACCTTCGGA
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
14 2 0.04
16 14 0.27
17 28 0.54
18 8 0.15
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.31
Consensus pattern (17 bp):
TAAATAAATAAATAAAA
Found at i:4713047 original size:2 final size:2
Alignment explanation
Indices: 4713040--4713064 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4713030 AAATGTGATA
4713040 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4713065 ATAGGTTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4715511 original size:31 final size:31
Alignment explanation
Indices: 4715472--4715537 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
4715462 GTAATATAAT
4715472 TCCC-CAACATTTAGTCTGTTTACAATATGA
1 TCCCTCAACATTTAGTCTGTTTACAATATGA
** *
4715502 TCCCTCAACATTTAGTCTGTTTGTAATATGG
1 TCCCTCAACATTTAGTCTGTTTACAATATGA
4715533 TCCCT
1 TCCCT
4715538 GACGTAACTG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 4 0.12
31 28 0.88
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (31 bp):
TCCCTCAACATTTAGTCTGTTTACAATATGA
Found at i:4717122 original size:31 final size:31
Alignment explanation
Indices: 4717084--4717152 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
4717074 CTTTTAAAAC
4717084 TTGCAATATAATCCCCCAACATTTAATCTAT
1 TTGCAATATAATCCCCCAACATTTAATCTAT
** * *
4717115 TTGCAATATGGTCCCTCAACATTTAGTCTAT
1 TTGCAATATAATCCCCCAACATTTAATCTAT
4717146 TTGCAAT
1 TTGCAAT
4717153 GGTCCCCGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (31 bp):
TTGCAATATAATCCCCCAACATTTAATCTAT
Found at i:4717867 original size:10 final size:10
Alignment explanation
Indices: 4717828--4717867 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
4717818 TTCATCACAC
4717828 CAAATTCTCT
1 CAAATTCTCT
*
4717838 CAATTTCTCT
1 CAAATTCTCT
*
4717848 CAACTTCTCT
1 CAAATTCTCT
*
4717858 CAAATACTCT
1 CAAATTCTCT
4717868 TATATCTTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.40
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:4717921 original size:9 final size:9
Alignment explanation
Indices: 4717909--4717942 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
4717899 TAATATTTTG
4717909 TATTTAATT
1 TATTTAATT
*
4717918 TATTTAA-G
1 TATTTAATT
4717926 TATTTAATT
1 TATTTAATT
4717935 TATTTAAT
1 TATTTAAT
4717943 ATTTACTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (9 bp):
TATTTAATT
Found at i:4717930 original size:17 final size:17
Alignment explanation
Indices: 4717908--4717947 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
4717898 TTAATATTTT
4717908 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
4717925 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
4717942 -TATTTA
1 GTATTTA
4717948 CTTATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 6 0.26
17 17 0.74
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
GTATTTAATTTATTTAA
Found at i:4720248 original size:35 final size:33
Alignment explanation
Indices: 4720208--4720292 Score: 82
Period size: 35 Copynumber: 2.5 Consensus size: 33
4720198 GTATTTCAGT
*
4720208 TAATTTTGTT-TATTATCATTTAATATCAGTTATTG
1 TAATTTTGTTATATTACCATTTAATA-C--TTATTG
*
4720243 TAATTTGGTTATCATTTACCATTTAATACTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATACTTATTG
* *
4720278 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
4720293 TAAAATTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 24 0.57
36 1 0.02
37 2 0.05
38 12 0.29
ACGTcount: A:0.27, C:0.07, G:0.11, T:0.55
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATACTTATTG
Found at i:4724512 original size:3 final size:3
Alignment explanation
Indices: 4724504--4724536 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
4724494 ATAAACATCT
4724504 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4724537 TAAGTCCAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4735201 original size:10 final size:10
Alignment explanation
Indices: 4735186--4735223 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
4735176 CTGGTTCACT
4735186 GGTTCAATCG
1 GGTTCAATCG
*
4735196 GGTTCAACCG
1 GGTTCAATCG
4735206 CGGTTCAATCG
1 -GGTTCAATCG
4735217 GGTTCAA
1 GGTTCAA
4735224 CCGCGCAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (10 bp):
GGTTCAATCG
Found at i:4735212 original size:21 final size:21
Alignment explanation
Indices: 4735186--4735228 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
4735176 CTGGTTCACT
4735186 GGTTCAATCGGGTTCAACCGC
1 GGTTCAATCGGGTTCAACCGC
4735207 GGTTCAATCGGGTTCAACCGC
1 GGTTCAATCGGGTTCAACCGC
4735228 G
1 G
4735229 CAATCAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (21 bp):
GGTTCAATCGGGTTCAACCGC
Found at i:4735981 original size:30 final size:30
Alignment explanation
Indices: 4735945--4736001 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
4735935 GCGATTCAAA
* *
4735945 CCGGTTTTGCCGGTTTTCAGCCGGTTCACC
1 CCGGTTTTACCAGTTTTCAGCCGGTTCACC
* *
4735975 CCGGTTTTACTAGTTTTCATCCGGTTC
1 CCGGTTTTACCAGTTTTCAGCCGGTTC
4736002 TACCGATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.09, C:0.30, G:0.23, T:0.39
Consensus pattern (30 bp):
CCGGTTTTACCAGTTTTCAGCCGGTTCACC
Found at i:4740908 original size:12 final size:12
Alignment explanation
Indices: 4740891--4740918 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
4740881 TTATTATGTA
4740891 GATCTTTGATTC
1 GATCTTTGATTC
4740903 GATCTTTGATTC
1 GATCTTTGATTC
4740915 GATC
1 GATC
4740919 CAATAAGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.46
Consensus pattern (12 bp):
GATCTTTGATTC
Found at i:4746599 original size:20 final size:20
Alignment explanation
Indices: 4746574--4746615 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
4746564 AAAAATCCTT
4746574 CATCAATTCTTCAAAATCAC
1 CATCAATTCTTCAAAATCAC
4746594 CATCAATTCTTCAAAATCAC
1 CATCAATTCTTCAAAATCAC
4746614 CA
1 CA
4746616 AACCCTCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.31, G:0.00, T:0.29
Consensus pattern (20 bp):
CATCAATTCTTCAAAATCAC
Found at i:4752354 original size:2 final size:2
Alignment explanation
Indices: 4752347--4752394 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
4752337 ACTGTTCTTT
4752347 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4752389 TA TA TA
1 TA TA TA
4752395 CCTAGTTTCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4761660 original size:21 final size:21
Alignment explanation
Indices: 4761635--4761729 Score: 163
Period size: 21 Copynumber: 4.5 Consensus size: 21
4761625 TTTGGAATTA
4761635 GCGTCGCGAATATGGGTGATC
1 GCGTCGCGAATATGGGTGATC
*
4761656 GCGTCGCGAATCTGGGTGATC
1 GCGTCGCGAATATGGGTGATC
*
4761677 GCATCGCGAATATGGGTGATC
1 GCGTCGCGAATATGGGTGATC
*
4761698 GCATCGCGAATATGGGTGATC
1 GCGTCGCGAATATGGGTGATC
4761719 GCGTCGCGAAT
1 GCGTCGCGAAT
4761730 TCGAGTTCGC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 70 1.00
ACGTcount: A:0.20, C:0.21, G:0.36, T:0.23
Consensus pattern (21 bp):
GCGTCGCGAATATGGGTGATC
Found at i:4761778 original size:21 final size:21
Alignment explanation
Indices: 4761736--4761830 Score: 120
Period size: 21 Copynumber: 4.6 Consensus size: 21
4761726 GAATTCGAGT
*
4761736 TCGCGTCGCGAA-TTAAAAAA
1 TCGCGTCGCGAATTTAGAAAA
*
4761756 TCGCGTCGTGAATTTAGAAAA
1 TCGCGTCGCGAATTTAGAAAA
* *
4761777 TCGCGTCGTGAATTTAGAGAA
1 TCGCGTCGCGAATTTAGAAAA
* *
4761798 TCGCGTTGCGAATTTAGAGAA
1 TCGCGTCGCGAATTTAGAAAA
*
4761819 TCGCGTTGCGAA
1 TCGCGTCGCGAA
4761831 ATTGGAGTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
20 11 0.16
21 58 0.84
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (21 bp):
TCGCGTCGCGAATTTAGAAAA
Found at i:4763608 original size:33 final size:33
Alignment explanation
Indices: 4763565--4763633 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
4763555 TGAAGGAGAA
*
4763565 TAGCTTAAAATGGCTTAATTCTCTTGATTATTC
1 TAGCTAAAAATGGCTTAATTCTCTTGATTATTC
4763598 TAGCTAAAAATGGCTTAATTCTCTTGATTATTC
1 TAGCTAAAAATGGCTTAATTCTCTTGATTATTC
4763631 TAG
1 TAG
4763634 TATTTAAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.43
Consensus pattern (33 bp):
TAGCTAAAAATGGCTTAATTCTCTTGATTATTC
Found at i:4765170 original size:23 final size:22
Alignment explanation
Indices: 4765144--4765186 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
4765134 ATAATTATGT
4765144 CTTTATGACACATTTATATCTGC
1 CTTTATGACACATTT-TATCTGC
**
4765167 CTTTATGGTACATTTTATCT
1 CTTTATGACACATTTTATCT
4765187 ATGTATTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.23, C:0.19, G:0.09, T:0.49
Consensus pattern (22 bp):
CTTTATGACACATTTTATCTGC
Found at i:4766716 original size:77 final size:77
Alignment explanation
Indices: 4766588--4766741 Score: 254
Period size: 77 Copynumber: 2.0 Consensus size: 77
4766578 GATTTGTGAG
* * * *
4766588 TAATGTATGACATATGAATATACGTGATTCCAGTTTATGTTTTCCAGTAACATCATTAATTCAGT
1 TAATGTATGACACATGAATATACGTGATTCCAATTTATATTTTCCAATAACATCATTAATTCAGT
4766653 TTTTGTCTAGAT
66 TTTTGTCTAGAT
*
4766665 TAATGTATGACACATGAATATACGTGATTCCAATTTATATTTTCCAATAACATCATTAATTCGGT
1 TAATGTATGACACATGAATATACGTGATTCCAATTTATATTTTCCAATAACATCATTAATTCAGT
*
4766730 TTTTGTTTAGAT
66 TTTTGTCTAGAT
4766742 CGAATTACAG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (77 bp):
TAATGTATGACACATGAATATACGTGATTCCAATTTATATTTTCCAATAACATCATTAATTCAGT
TTTTGTCTAGAT
Found at i:4783023 original size:31 final size:32
Alignment explanation
Indices: 4782985--4783047 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
4782975 TGTTCACGTT
* *
4782985 GATCATTCA-TTAGTTTCTCTCGAACACTAAG
1 GATCATTCACATACTTTCTCTCGAACACTAAG
4783016 GATCATTCACATACTTTCTCTCGAACACTAAG
1 GATCATTCACATACTTTCTCTCGAACACTAAG
4783048 TGTTCTACCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 9 0.31
32 20 0.69
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.33
Consensus pattern (32 bp):
GATCATTCACATACTTTCTCTCGAACACTAAG
Found at i:4784407 original size:21 final size:21
Alignment explanation
Indices: 4784382--4784488 Score: 69
Period size: 21 Copynumber: 5.2 Consensus size: 21
4784372 CTAATCTTCA
4784382 GTATGAATACCAATTTATCTG
1 GTATGAATACCAATTTATCTG
* * ** *
4784403 GTATGAAGA-TAATTCCTCTT
1 GTATGAATACCAATTTATCTG
* ***
4784423 GTATGAAGACC-ATTTCGATG
1 GTATGAATACCAATTTATCTG
*
4784443 GTAT-AGATACCAGTTTATCTG
1 GTATGA-ATACCAATTTATCTG
*
4784464 GTAT-AGATACCAGTTTATCTG
1 GTATGA-ATACCAATTTATCTG
4784485 GTAT
1 GTAT
4784489 AGAGACTACA
Statistics
Matches: 68, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
19 1 0.01
20 29 0.43
21 38 0.56
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (21 bp):
GTATGAATACCAATTTATCTG
Found at i:4784454 original size:20 final size:21
Alignment explanation
Indices: 4784431--4784491 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
4784421 TTGTATGAAG
*
4784431 ACCA-TTTCGATGGTATAGAT
1 ACCAGTTTAGATGGTATAGAT
**
4784451 ACCAGTTTATCTGGTATAGAT
1 ACCAGTTTAGATGGTATAGAT
**
4784472 ACCAGTTTATCTGGTATAGA
1 ACCAGTTTAGATGGTATAGA
4784492 GACTACAGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
20 4 0.11
21 33 0.89
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.36
Consensus pattern (21 bp):
ACCAGTTTAGATGGTATAGAT
Found at i:4784489 original size:21 final size:21
Alignment explanation
Indices: 4784441--4784491 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
4784431 ACCATTTCGA
4784441 TGGTATAGATACCAGTTTATC
1 TGGTATAGATACCAGTTTATC
4784462 TGGTATAGATACCAGTTTATC
1 TGGTATAGATACCAGTTTATC
4784483 TGGTATAGA
1 TGGTATAGA
4784492 GACTACAGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (21 bp):
TGGTATAGATACCAGTTTATC
Found at i:4788805 original size:20 final size:20
Alignment explanation
Indices: 4788776--4788832 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
4788766 ATCGATACTT
4788776 AGGGTGAGTATCGATACCCA
1 AGGGTGAGTATCGATACCCA
*
4788796 AGGGTCAGTATCGATACCCA
1 AGGGTGAGTATCGATACCCA
4788816 AGGGTGAGTATCGATAC
1 AGGGTGAGTATCGATAC
4788833 TGATAACATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (20 bp):
AGGGTGAGTATCGATACCCA
Found at i:4789998 original size:51 final size:51
Alignment explanation
Indices: 4789940--4790051 Score: 143
Period size: 51 Copynumber: 2.2 Consensus size: 51
4789930 GGGGTCCGAC
* * * **
4789940 TATCACATAGCATCAATAAAGTCCTCTCTAATCTACTAAATGATCTTTTGG
1 TATCACATAGCATCAATAAAGTCCTCTATAAGCTACTAAAAGATCTTCCGG
** *
4789991 TATCACATAGCATCGGTAAATTCCTCTATAAGCTACTAAAAGATCTTCCGG
1 TATCACATAGCATCAATAAAGTCCTCTATAAGCTACTAAAAGATCTTCCGG
*
4790042 TAACACATAG
1 TATCACATAG
4790052 AACCAGGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (51 bp):
TATCACATAGCATCAATAAAGTCCTCTATAAGCTACTAAAAGATCTTCCGG
Found at i:4790991 original size:20 final size:20
Alignment explanation
Indices: 4790962--4790999 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4790952 GAAGACTATA
*
4790962 GTATCGATACCAAGCATCTG
1 GTATCAATACCAAGCATCTG
*
4790982 GTATCAATACCGAGCATC
1 GTATCAATACCAAGCATC
4791000 CGATATTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (20 bp):
GTATCAATACCAAGCATCTG
Found at i:4791908 original size:10 final size:9
Alignment explanation
Indices: 4791889--4791924 Score: 54
Period size: 10 Copynumber: 3.8 Consensus size: 9
4791879 ATTTGAGGTG
4791889 TTATAATATA
1 TTAT-ATATA
4791899 TTATAGTATA
1 TTATA-TATA
4791909 TTATATATA
1 TTATATATA
4791918 TTATATA
1 TTATATA
4791925 GTTTTTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 12 0.48
10 13 0.52
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (9 bp):
TTATATATA
Found at i:4793431 original size:291 final size:291
Alignment explanation
Indices: 4792911--4793477 Score: 1093
Period size: 291 Copynumber: 1.9 Consensus size: 291
4792901 ATCTATGTCA
4792911 TTTAGATCGTTGTATGGTCGATTGTGGCTTCAATCCGGGTTCATGAGGAGGGGCAAATATTTTTT
1 TTTAGATCGTTGTATGGTCGATTGTGGCTTCAATCCGGGTTCATGAGGAGGGGCAAATATTTTTT
4792976 GATTCAGGTTTTAGGTCTCCAGTCACTGTGGATGGTGCCGGAGTGGCGATGATGCGGTGGTCGAT
66 GATTCAGGTTTTAGGTCTCCAGTCACTGTGGATGGTGCCGGAGTGGCGATGATGCGGTGGTCGAT
4793041 GAGGAGGTCATGACTGTTTTTAGGTTTTGTCTTGATAGGGTGGGGATAGGTTTTTTTGGAGGTTT
131 GAGGAGGTCATGACTGTTTTTAGGTTTTGTCTTGATAGGGTGGGGATAGGTTTTTTTGGAGGTTT
4793106 TGTGGGTTATGAGATCTACAAATGAAAAATTGTGAAAATGAGCTTATTATAACAAGGGCTATTTT
196 TGTGGGTTATGAGATCTACAAATGAAAAATTGTGAAAATGAGCTTATTATAACAAGGGCTA-TTT
4793171 GTAAATATAAAATTTTTTTTAAATTTTTGCAG
260 GTAAATATAAAATTTTTTTTAAATTTTTGCAG
4793203 TTTAGATCGTTGTATGGTCGATTGTGGCTTCAATCCGGGTTCATGAGGAGGGGCAAATA-TTTTT
1 TTTAGATCGTTGTATGGTCGATTGTGGCTTCAATCCGGGTTCATGAGGAGGGGCAAATATTTTTT
4793267 GATTCAGGTTTTAGGTCTCCAGTCACTGTGGATGGTGCCGGAGTGGCGATGATGCGGTGGTCGAT
66 GATTCAGGTTTTAGGTCTCCAGTCACTGTGGATGGTGCCGGAGTGGCGATGATGCGGTGGTCGAT
4793332 GAGGAGGTCATGACTGTTTTTAGGTTTTGTCTTGATAGGGTGGGGATAGGTTTTTTTGGAGGTTT
131 GAGGAGGTCATGACTGTTTTTAGGTTTTGTCTTGATAGGGTGGGGATAGGTTTTTTTGGAGG-TT
*
4793397 TTGTGGGTTATGAGATCTACAAATG-AATATTGTGAAAATGAGCTTATTATAACAAGGGCTATTT
195 TTGTGGGTTATGAGATCTACAAATGAAAAATTGTGAAAATGAGCTTATTATAACAAGGGCTATTT
4793461 GTAAATATAAAATTTTT
260 GTAAATATAAAATTTTT
4793478 AAATTATTTT
Statistics
Matches: 273, Mismatches: 1, Indels: 4
0.98 0.00 0.01
Matches are distributed among these distances:
290 20 0.07
291 167 0.61
292 86 0.32
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.37
Consensus pattern (291 bp):
TTTAGATCGTTGTATGGTCGATTGTGGCTTCAATCCGGGTTCATGAGGAGGGGCAAATATTTTTT
GATTCAGGTTTTAGGTCTCCAGTCACTGTGGATGGTGCCGGAGTGGCGATGATGCGGTGGTCGAT
GAGGAGGTCATGACTGTTTTTAGGTTTTGTCTTGATAGGGTGGGGATAGGTTTTTTTGGAGGTTT
TGTGGGTTATGAGATCTACAAATGAAAAATTGTGAAAATGAGCTTATTATAACAAGGGCTATTTG
TAAATATAAAATTTTTTTTAAATTTTTGCAG
Done.