genome.fa.s8496.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008496.1 Hibiscus syriacus cultivar Beakdansim tig00111339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99154

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5389--6675	427	3.0	427	92	2	2113	35	22	14	27	1.93
11497--11545	23	2.1	23	85	7	64	59	14	2	24	1.46
15863--15902	20	2.0	21	85	14	57	42	5	7	45	1.54
16130--16168	19	2.1	19	95	0	69	20	38	15	25	1.92
16116--16275	63	2.5	64	85	4	207	30	25	16	28	1.97
16116--16295	63	2.8	63	82	7	202	28	26	17	27	1.97
18194--18223	13	2.3	13	94	0	51	16	20	50	13	1.78
18238--18293	9	5.6	10	82	14	71	35	28	21	14	1.92
25457--25487	13	2.4	13	94	0	53	16	19	48	16	1.81
25499--25554	10	5.6	10	85	6	78	33	28	21	16	1.95
25499--25554	21	2.8	20	86	7	78	33	28	21	16	1.95
31715--31770	22	2.7	21	83	10	62	30	23	17	28	1.97
34105--34144	20	2.0	21	85	14	57	42	5	7	45	1.54
34375--34413	19	2.1	19	95	0	69	20	38	15	25	1.92
34361--34521	65	2.5	65	84	3	209	29	26	16	27	1.97
34361--34541	64	2.8	64	82	2	211	28	26	17	27	1.97
40998--41047	24	2.1	24	85	7	66	60	14	2	24	1.45
50975--51092	32	3.8	32	79	11	145	33	17	17	31	1.94
50955--51120	63	2.7	63	95	0	289	32	18	18	31	1.94
50955--51148	31	6.2	31	77	12	200	30	19	19	30	1.96
51132--51203	30	2.4	30	95	0	126	25	20	23	30	1.99
55642--55671	7	4.3	7	100	0	60	0	40	13	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59256--59283	2	14.0	2	100	0	56	50	0	0	50	1.00
60930--60978	21	2.3	21	96	0	89	8	24	28	38	1.84
62534--62581	24	2.0	24	95	0	87	27	29	10	33	1.90
62912--62974	23	3.0	20	71	15	63	26	4	15	52	1.63
65047--65427	189	2.0	186	94	1	672	30	27	13	27	1.94
65518--66840	120	11.1	120	85	3	1578	28	28	15	28	1.96
68124--68197	17	4.7	16	67	24	50	54	0	0	45	1.00
68112--68201	23	4.0	22	75	13	85	52	0	0	47	1.00
69249--69365	60	2.0	60	92	0	198	44	14	9	31	1.77
69855--69885	16	1.9	16	93	0	53	41	6	22	29	1.78
70203--70254	20	2.6	20	96	0	95	38	26	13	21	1.90
70244--70342	21	4.8	20	72	6	72	36	23	19	21	1.95
70309--70502	20	9.6	20	81	5	221	35	25	19	19	1.95
70309--70502	60	3.2	60	83	0	253	35	25	19	19	1.95
70884--70954	33	2.2	33	89	0	106	11	21	18	49	1.78
71075--71129	14	3.6	14	73	21	56	41	23	25	9	1.83
71075--71145	33	2.2	33	94	0	124	43	25	22	8	1.81
71141--71238	19	5.7	19	70	22	81	10	24	22	42	1.84
71163--71252	14	5.7	14	74	23	81	8	25	23	42	1.83
71146--71260	33	3.5	33	95	0	212	9	24	20	45	1.81
72959--73340	185	2.1	186	97	0	739	22	12	18	46	1.83
72959--73338	93	4.1	93	98	0	735	22	12	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73382--73510	19	7.3	19	75	17	125	45	28	17	8	1.77
73418--73510	33	2.8	32	91	4	150	46	27	18	7	1.76
73382--73510	52	2.5	52	74	14	140	45	28	17	8	1.77
73506--73640	19	7.6	19	76	16	137	10	19	24	45	1.81
73528--73584	14	3.7	14	77	20	60	8	21	24	45	1.80
73511--73603	33	2.8	33	98	0	177	9	20	22	47	1.79
75455--75527	38	1.9	38	97	0	137	28	1	16	53	1.51
75450--75514	19	3.4	19	64	8	51	24	1	15	58	1.46
75509--75544	14	2.6	14	95	0	63	33	0	22	44	1.53
75651--75752	19	5.6	19	84	13	151	44	17	23	14	1.86
75781--76215	19	24.4	19	82	13	570	14	20	17	47	1.82
75759--76187	52	8.0	52	92	5	696	14	20	16	47	1.83
75781--76187	109	3.8	107	96	1	389	14	20	16	47	1.82
78521--78545	12	2.1	12	100	0	50	0	28	0	72	0.86
78720--78766	24	2.0	24	87	8	69	38	21	14	25	1.92
79440--79808	20	18.5	20	86	4	458	20	18	26	34	1.96
80551--80637	37	2.6	32	75	21	95	39	39	9	12	1.75
85957--86003	20	2.3	20	78	7	51	25	0	4	70	1.05
86052--86144	45	2.0	46	83	2	116	44	1	12	41	1.50
86132--86185	25	2.2	24	93	3	90	46	0	12	40	1.42
86132--86185	12	4.4	12	81	4	72	46	0	12	40	1.42
86287--86315	3	10.0	3	92	7	51	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87775--87816	2	21.0	2	95	0	75	50	2	0	47	1.14
98257--98434	24	7.6	24	78	7	186	19	10	52	16	1.73
98257--98434	47	3.8	48	79	8	186	19	10	52	16	1.73

Tables:   1

The End!