genome.fa.s8498.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008498.1 Hibiscus syriacus cultivar Beakdansim tig00111343_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52382

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11815--11855	2	20.5	2	100	0	82	48	0	0	51	1.00
13760--13974	118	1.8	118	89	0	340	30	13	19	35	1.91
14092--14143	20	2.6	19	82	14	61	32	17	21	28	1.96
15965--16027	18	3.3	18	77	16	72	28	30	22	19	1.98
17540--17700	64	2.5	63	85	7	198	27	19	18	34	1.95
20976--21045	18	3.7	18	75	14	68	25	31	21	21	1.98
22556--22680	64	1.9	65	90	3	198	27	20	16	36	1.94
22556--22699	64	2.2	64	85	6	184	27	20	15	35	1.94
22556--22716	64	2.5	63	83	5	180	27	20	17	34	1.95
23840--23892	25	2.1	25	83	13	65	75	0	3	20	0.96
23858--23919	12	5.0	12	73	11	54	69	1	4	24	1.17
27346--27402	22	2.6	22	88	5	80	33	17	17	31	1.93
27269--27535	117	2.3	117	84	1	338	32	14	25	26	1.95
27464--27526	22	2.9	22	90	0	99	30	14	25	30	1.95
27867--28045	58	3.1	58	90	0	268	30	12	21	35	1.90
28014--28069	28	2.0	28	89	0	85	21	16	23	39	1.92
27955--28132	87	2.0	87	93	0	302	29	12	20	37	1.90
28042--28176	58	2.3	59	84	1	182	31	12	18	37	1.88
33959--33988	12	2.5	12	94	0	51	40	0	6	53	1.27
36885--36928	6	7.3	6	81	0	52	50	0	0	50	1.00
36890--36928	12	3.2	12	85	0	60	48	0	0	51	1.00
36878--36935	21	2.6	23	81	13	75	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37284--37412	40	3.5	39	90	8	184	20	20	10	48	1.78
37177--37527	182	1.9	184	86	6	507	24	19	13	42	1.87
37355--38014	113	5.8	113	90	3	1015	26	19	15	38	1.91
37355--38014	225	2.9	224	91	3	1018	26	19	15	38	1.91
38312--38416	52	2.0	52	98	0	201	32	17	13	37	1.88
38881--39102	83	2.7	83	94	0	390	39	22	12	26	1.89
40474--40518	4	11.8	4	86	13	60	0	17	0	82	0.68
40462--40522	22	2.7	23	82	12	83	0	19	0	80	0.72
40465--40522	18	3.4	17	80	7	73	0	18	0	81	0.70
47783--47814	15	2.1	15	94	0	55	46	9	18	25	1.79

Tables:   1

The End!