Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000085.1 Hibiscus syriacus cultivar Beakdansim tig00000156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89855

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10606--10645
14
2.9
14
100
0
80
30
7
35
27
1.84
13116--13151
16
2.4
14
90
9
54
83
0
0
16
0.65
22154--22194
10
4.0
10
83
3
55
78
9
0
12
0.98
22485--22620
30
5.0
28
67
21
83
63
8
10
16
1.49
22508--22541
17
2.0
17
100
0
68
76
11
0
11
1.02
22498--22566
15
4.4
16
75
10
54
71
10
5
13
1.31
22540--22656
30
3.9
30
74
8
96
60
7
13
17
1.56
23485--23510
11
2.4
11
100
0
52
0
15
0
84
0.62
24517--24665
59
2.5
59
90
0
226
30
13
28
28
1.94
24666--25186
38
14.1
37
71
5
237
36
14
17
32
1.89
24667--25031
74
4.9
74
88
0
532
35
14
16
32
1.90
25013--25187
74
2.4
73
89
1
260
38
14
17
30
1.89
27515--27578
14
4.6
14
94
1
103
59
14
17
9
1.60
31136--31184
23
2.1
23
82
14
57
44
8
2
44
1.45
31601--31641
10
4.0
10
83
3
55
78
9
0
12
0.98
38134--38160
4
6.8
4
100
0
54
22
0
0
77
0.76
41645--41717
31
2.3
31
86
6
94
30
17
21
30
1.97
46435--46464
14
2.1
15
93
6
53
36
0
13
50
1.42
46611--46731
31
3.9
31
82
6
129
28
20
20
30
1.98
50560--50599
2
20.0
2
100
0
80
50
0
0
50
1.00
50809--50870
26
2.3
26
91
2
97
41
6
0
51
1.27
50809--50881
26
2.8
26
85
6
94
39
9
0
50
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51011--51065
21
2.4
23
76
17
60
41
5
7
45
1.55
57911--57965
28
1.9
28
85
3
74
58
0
7
34
1.26
57975--58007
17
2.1
16
88
11
50
66
0
0
33
0.92
59537--59570
16
2.1
16
89
10
52
29
0
2
67
1.05
59552--59599
18
2.7
18
77
9
53
33
2
0
64
1.05
59615--59647
2
17.0
2
93
6
59
48
0
0
51
1.00
59580--59635
28
2.0
28
86
6
78
44
1
0
53
1.11
59938--59985
23
2.1
23
84
7
62
52
6
2
39
1.39
63895--63943
24
2.0
24
84
0
62
69
2
0
28
1.00
66295--66371
40
1.9
39
84
2
100
55
6
15
22
1.62
66942--66989
23
2.1
23
84
3
62
20
16
6
56
1.62
67632--67656
2
12.5
2
100
0
50
52
0
0
48
1.00
76806--76834
10
2.9
10
100
0
58
6
41
10
41
1.66
81241--81265
12
2.1
12
100
0
50
40
24
16
20
1.91

Tables:   1

The End!