genome.fa.s8500.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008500.1 Hibiscus syriacus cultivar Beakdansim tig00111350_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122187

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3041--3202	64	2.5	65	77	8	170	32	20	20	25	1.97
4160--4228	29	2.3	29	85	2	75	18	23	27	30	1.98
4171--4231	29	2.1	30	90	3	97	19	19	27	32	1.96
4499--4544	2	23.0	2	100	0	92	50	0	0	50	1.00
17068--17103	18	2.0	18	88	0	54	30	8	16	44	1.77
17969--18272	149	2.0	149	99	0	599	27	15	20	35	1.93
18250--18295	23	2.0	23	91	0	74	21	23	26	28	1.99
22260--22344	32	2.6	32	79	5	89	58	2	0	38	1.11
22260--22335	35	2.3	34	81	6	93	60	1	0	38	1.05
22285--22365	34	2.4	34	82	13	98	62	3	0	33	1.12
22952--23084	68	1.9	69	81	4	162	43	8	9	38	1.68
24132--24184	21	2.5	21	84	0	70	20	26	18	33	1.96
24174--24360	20	9.3	20	77	11	195	35	21	19	23	1.96
24174--24381	40	5.2	40	84	7	235	35	21	19	24	1.96
24210--24381	60	2.9	59	78	16	167	35	20	19	24	1.96
25212--25265	24	2.2	24	93	0	90	20	18	20	40	1.91
27685--27773	20	4.4	21	81	8	105	37	23	20	19	1.94
27685--27773	40	2.2	40	84	7	119	37	23	20	19	1.94
27778--27854	19	4.3	19	79	17	101	45	16	22	15	1.85
28016--28052	14	2.6	14	86	0	56	48	21	0	29	1.50
30076--30120	21	2.1	21	87	0	63	31	28	24	15	1.96
31343--31420	31	2.5	31	85	4	95	21	20	23	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31393--31492	30	3.3	30	91	2	148	21	22	26	31	1.98
32262--32354	42	2.2	42	80	3	107	22	17	39	20	1.92
32896--32942	20	2.3	20	85	0	58	38	23	17	21	1.93
32989--33112	20	6.5	20	80	10	143	20	18	20	39	1.93
32972--33112	74	1.9	74	89	0	219	20	19	20	39	1.92
34984--35033	20	2.5	20	93	0	82	50	24	14	12	1.76
35077--35123	20	2.3	20	88	0	67	21	19	23	36	1.95
35694--35807	20	5.7	20	77	10	108	24	18	20	36	1.94
35694--35807	61	1.9	60	87	1	165	24	18	20	36	1.94
35693--35816	41	3.1	40	76	10	110	27	16	20	35	1.94
35804--35849	21	2.2	21	84	0	56	39	17	26	17	1.91
36665--36734	31	2.2	32	84	7	88	64	4	4	27	1.31
36666--36724	21	2.8	21	82	7	66	66	5	3	25	1.28
37242--37288	21	2.3	21	88	3	69	21	4	4	70	1.22
37242--37288	10	4.6	10	84	5	58	21	4	4	70	1.22
39201--39247	2	23.5	2	100	0	94	51	0	0	48	1.00
39934--39991	27	2.1	28	90	3	91	65	0	0	34	0.93
39907--40080	97	1.8	97	93	2	307	53	1	2	41	1.26
40029--40073	13	3.2	13	77	22	54	64	0	0	35	0.94
43296--43339	20	2.2	20	83	0	52	15	31	13	38	1.87
46790--46849	23	2.7	23	84	2	77	31	26	21	20	1.98
51791--51851	23	2.7	23	94	0	113	27	27	27	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53392--53434	22	2.0	22	90	0	68	6	30	37	25	1.82
58669--58693	13	1.9	13	100	0	50	44	0	0	56	0.99
58375--58742	188	2.0	187	93	0	628	42	8	3	44	1.52
68743--68779	14	2.8	13	88	8	56	62	0	0	37	0.96
68737--68798	18	3.4	18	88	8	90	64	0	0	35	0.94
69715--69758	3	14.7	3	100	0	88	34	0	0	65	0.93
87308--87353	12	3.6	12	81	16	56	45	17	19	17	1.85
87314--87354	12	3.1	13	80	19	57	46	14	17	21	1.84
89565--89604	21	1.9	21	94	0	71	30	15	7	47	1.72
89599--89697	33	3.0	33	91	1	155	33	7	14	45	1.71
89683--89737	13	4.2	13	75	13	58	34	3	12	49	1.59
90155--90188	18	1.9	18	88	5	52	41	11	8	38	1.73
90136--90192	15	3.7	15	77	9	51	35	12	10	42	1.77
90536--90603	34	2.0	34	94	0	118	32	11	19	36	1.88
90625--90672	25	1.9	25	95	0	87	27	8	27	37	1.85
99221--99291	19	3.7	19	96	0	124	29	16	30	22	1.96
100032--100109	20	3.9	20	81	10	97	21	20	29	28	1.98
100032--100108	38	2.0	40	87	5	113	20	20	29	28	1.98
106189--106259	19	3.7	19	96	0	124	30	16	30	21	1.95
106746--106803	24	2.5	21	75	25	55	39	5	22	32	1.76
107023--107096	18	3.9	18	79	10	85	20	18	32	28	1.96
109585--109611	10	2.7	10	100	0	54	40	29	29	0	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110497--110556	4	15.0	4	100	0	120	50	25	0	25	1.50
114023--114288	135	2.0	135	99	0	523	37	18	10	33	1.86
116162--116211	14	3.4	15	86	10	68	58	2	2	38	1.21
116171--116210	7	5.7	7	85	8	55	57	0	2	40	1.12
116388--116720	36	9.3	35	81	8	329	24	21	17	36	1.95
116421--116720	71	4.2	71	85	6	365	26	21	17	35	1.95
116388--116720	107	3.1	104	84	7	402	24	21	17	36	1.95

Tables:   1

The End!