Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008501.1 Hibiscus syriacus cultivar Beakdansim tig00111353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68816
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Found at i:50 original size:3 final size:3
Alignment explanation
Indices: 33--69 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
23 TATAAATATA
*
33 ATT A-T ATT GTT ATT ATT ATT ATT A-T ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
70 TATATTTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:60 original size:14 final size:15
Alignment explanation
Indices: 43--75 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
33 ATTATATTGT
43 TATTATTATTA-TTA
1 TATTATTATTATTTA
57 TATTATTATTATTTA
1 TATTATTATTATTTA
72 TATT
1 TATT
76 TTACATTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTATTATTATTTA
Found at i:1854 original size:2 final size:2
Alignment explanation
Indices: 1847--1895 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
1837 TGCTATATCG
* *
1847 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1889 TA TA TA T
1 TA TA TA T
1896 TTAAAGTATA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1870 original size:18 final size:18
Alignment explanation
Indices: 1849--1895 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
1839 CTATATCGTA
1849 TATATATATATATATATG
1 TATATATATATATATATG
1867 TATATATATATATATATG
1 TATATATATATATATATG
1885 TATATATATAT
1 TATATATATAT
1896 TTAAAGTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (18 bp):
TATATATATATATATATG
Found at i:5771 original size:45 final size:45
Alignment explanation
Indices: 5708--5888 Score: 301
Period size: 45 Copynumber: 4.0 Consensus size: 45
5698 GCATATCCAA
*
5708 TATTTTACC-ATATACTTACCATTTATTCCATAAGCACGTAAGCT
1 TATTTTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCT
* *
5752 TATTTTACCAATATACTTACCATTTATTTCGTAAGCTCGTAAGCT
1 TATTTTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCT
* *
5797 TATTTTACCAATATACTTGCCATTTATTCCATAAGCTTGTAAGCT
1 TATTTTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCT
*
5842 TATTTTACCAATATACTTACCATTTATTCCTTAAGCTCGTAAGCT
1 TATTTTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCT
5887 TA
1 TA
5889 CTTGTATGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
44 9 0.07
45 117 0.93
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (45 bp):
TATTTTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCT
Found at i:5823 original size:24 final size:24
Alignment explanation
Indices: 5796--5869 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
5786 GCTCGTAAGC
5796 TTATTTTACCAATATACTTGCCAT
1 TTATTTTACCAATATACTTGCCAT
** *
5820 TTA--TT-CC-ATA-AGCTTGTAAGC
1 TTATTTTACCAATATA-CTTGCCA-T
*
5841 TTATTTTACCAATATACTTACCAT
1 TTATTTTACCAATATACTTGCCAT
5865 TTATT
1 TTATT
5870 CCTTAAGCTC
Statistics
Matches: 36, Mismatches: 7, Indels: 14
0.63 0.12 0.25
Matches are distributed among these distances:
19 1 0.03
20 8 0.22
21 5 0.14
22 2 0.06
23 2 0.06
24 10 0.28
25 7 0.19
26 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.05, T:0.46
Consensus pattern (24 bp):
TTATTTTACCAATATACTTGCCAT
Found at i:6054 original size:40 final size:40
Alignment explanation
Indices: 6010--6131 Score: 208
Period size: 40 Copynumber: 3.0 Consensus size: 40
6000 ACCGTAGGGC
*
6010 TACACATAAGGTCGTGCCCACCATATACGCCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
* *
6050 TACACATAAGGTCGTGCCCACCATATACACTGTAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
6090 TACACATAAGGTCATGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
6130 TA
1 TA
6132 TAAACCTGCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:7995 original size:30 final size:30
Alignment explanation
Indices: 7961--8019 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
7951 TTAGGTCCCT
* *
7961 AAACTTT-TCAAAGTTTATACTTTGGTCACC
1 AAACTTTACCAAA-TTTATAATTTGGTCACC
7991 AAACTTTACCAAATTTATAATTTGGTCAC
1 AAACTTTACCAAATTTATAATTTGGTCAC
8020 TAAATAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTACCAAATTTATAATTTGGTCACC
Found at i:10096 original size:24 final size:24
Alignment explanation
Indices: 10067--10113 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
10057 TACATGACAT
10067 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
10091 TGTACATAGATGTTTTATACATC
1 TGTACATAGATGTTTTATACATC
10114 GTCAGGAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.43
Consensus pattern (24 bp):
TGTACATAGATGTTTTATACATCA
Found at i:18960 original size:21 final size:21
Alignment explanation
Indices: 18934--18973 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18924 CAGATCCCCA
*
18934 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
18955 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
18974 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:19008 original size:21 final size:21
Alignment explanation
Indices: 18955--19017 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 21
18945 ATTCCCCTGT
18955 GGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCGGTT-CCC-TCAA
*
18978 AGGGGGAATCGGTTCCCTC-A
1 GGGGGGAATCGGTTCCCTCAA
*
18998 GGGGAGGAATCGATTCCCTC
1 GGGG-GGAATCGGTTCCCTC
19018 TGCACCAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 4 0.11
21 16 0.44
22 3 0.08
23 13 0.36
ACGTcount: A:0.19, C:0.25, G:0.35, T:0.21
Consensus pattern (21 bp):
GGGGGGAATCGGTTCCCTCAA
Found at i:26169 original size:24 final size:24
Alignment explanation
Indices: 26142--26190 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
26132 TGCATGACAT
26142 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
26166 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
26190 T
1 T
26191 CAGGAAGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (24 bp):
TGTACATAGATGTTTTATACATCA
Found at i:29278 original size:24 final size:24
Alignment explanation
Indices: 29199--29342 Score: 161
Period size: 24 Copynumber: 6.1 Consensus size: 24
29189 GAGTCGAGGG
*
29199 TTCTACGCGGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
* * **
29223 -TCTATGTGGTCATTCAAGAC-AA
1 TTCTACGTGGTCCTTCGGGACAAA
* *
29245 TTCTATGTGGTCCTTCAGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
29269 TTCTACGTGGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
*
29293 TTCTACGTGGTCCTTCGGGAAAAA
1 TTCTACGTGGTCCTTCGGGACAAA
*
29317 ATCTACGTGG-CACTTCGGTG-CAAA
1 TTCTACGTGGTC-CTTCGG-GACAAA
29341 TT
1 TT
29343 ATATGAGCAG
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
22 2 0.02
23 34 0.33
24 66 0.64
25 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (24 bp):
TTCTACGTGGTCCTTCGGGACAAA
Found at i:32480 original size:23 final size:24
Alignment explanation
Indices: 32435--32480 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
32425 AGGTTCGAGT
* *
32435 TCGAGTTTGAGTTTGAGACTTTTA
1 TCGAGTTTAAGTTTAAGACTTTTA
*
32459 TCGAG-TTAAGTTTAAGATTTTT
1 TCGAGTTTAAGTTTAAGACTTTT
32481 TCTTTTCGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.24, C:0.07, G:0.22, T:0.48
Consensus pattern (24 bp):
TCGAGTTTAAGTTTAAGACTTTTA
Found at i:36246 original size:26 final size:26
Alignment explanation
Indices: 36217--36289 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
36207 TTGAATAATT
*
36217 AGAAAATATATTCAATTTTAATTTGA
1 AGAAAATATATTCAAATTTAATTTGA
* * *
36243 AGAATAATA-ATTTAAATTTACTTTTA
1 AGAA-AATATATTCAAATTTAATTTGA
36269 AGTAAAA-ATATTCAAATTTAA
1 AG-AAAATATATTCAAATTTAA
36290 AACAACTTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.03
26 31 0.82
27 6 0.16
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.41
Consensus pattern (26 bp):
AGAAAATATATTCAAATTTAATTTGA
Found at i:39665 original size:46 final size:46
Alignment explanation
Indices: 39615--40039 Score: 589
Period size: 46 Copynumber: 9.2 Consensus size: 46
39605 AAATGAATGA
* * * * * *
39615 ATAAATGAAAATTCATAATGGTGCATTATAGACATAAAAGAATGTC
1 ATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
* * * *
39661 ATAAATGAAAATGCGTAATGGTGCATTATAAGCATGAAATGATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
* * *
39707 ATAAATTAAAATGCATAACGATGCATTATAGGCATGAAAGGATGTC
1 ATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
* * * * *
39753 ATAAATGAAAATGCATAACAGTTCATTATCGGCATGAAAGAATGTC
1 ATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
* *
39799 ATAAATGAAAATGCGTAATGGTGCATTATAGGCATGAAAGGATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
*
39845 ATAAATGAAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGTC
1 ATAAATG-AAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
*
39892 ATAAATGAAAATGCATAACGGTGCATTATCGGCATGAAAGGATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
* * *
39938 ATAAATGAAAATGCATAACGGTGCATTATCGACATGAAAGAATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
* * *
39984 ATAAATGAAAATGCATAACAGTGCGTTATAGGCATGAAATGATGCC
1 ATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
40030 ATAAATGAAA
1 ATAAATGAAA
40040 TAAAGAATAA
Statistics
Matches: 337, Mismatches: 41, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
46 294 0.87
47 43 0.13
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (46 bp):
ATAAATGAAAATGCATAACGGTGCATTATAGGCATGAAAGGATGCC
Found at i:39928 original size:185 final size:185
Alignment explanation
Indices: 39615--40039 Score: 636
Period size: 185 Copynumber: 2.3 Consensus size: 185
39605 AAATGAATGA
* * * * * *
39615 ATAAATGAAAATTCATAATGGTGCATTATAGACATAAAAGAATGTCATAAATG-AAAATGCGTAA
1 ATAAATGAAAATGCATAATGGTGCATTATAGGCATGAAAGGATGCCATAAATGAAAAATGCATAA
* * *
39679 TGGTGCATTATAAGCATGAAATGATGCCATAAATTAAAATGCATAACGATGCATTATAGGCATGA
66 CGGTGCATTATAAGCATGAAAGGATGCCATAAATGAAAATGCATAACGATGCATTATAGGCATGA
* * * *
39744 AAGGATGTCATAAATGAAAATGCATAACAGTTCATTATCGGCATGAAAGAATGTC
131 AAGGATGCCATAAATGAAAATGCATAACAGTGCATTATCGACATGAAAGAATGCC
*
39799 ATAAATGAAAATGCGTAATGGTGCATTATAGGCATGAAAGGATGCCATAAATGAAAAATGCATAA
1 ATAAATGAAAATGCATAATGGTGCATTATAGGCATGAAAGGATGCCATAAATGAAAAATGCATAA
* * * *
39864 CGGTGCATTATAGGCATGAAAGGATGTCATAAATGAAAATGCATAACGGTGCATTATCGGCATGA
66 CGGTGCATTATAAGCATGAAAGGATGCCATAAATGAAAATGCATAACGATGCATTATAGGCATGA
*
39929 AAGGATGCCATAAATGAAAATGCATAACGGTGCATTATCGACATGAAAGAATGCC
131 AAGGATGCCATAAATGAAAATGCATAACAGTGCATTATCGACATGAAAGAATGCC
** * *
39984 ATAAATGAAAATGCATAACAGTGCGTTATAGGCATGAAATGATGCCATAAATGAAA
1 ATAAATGAAAATGCATAATGGTGCATTATAGGCATGAAAGGATGCCATAAATGAAA
40040 TAAAGAATAA
Statistics
Matches: 216, Mismatches: 24, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
184 47 0.22
185 169 0.78
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (185 bp):
ATAAATGAAAATGCATAATGGTGCATTATAGGCATGAAAGGATGCCATAAATGAAAAATGCATAA
CGGTGCATTATAAGCATGAAAGGATGCCATAAATGAAAATGCATAACGATGCATTATAGGCATGA
AAGGATGCCATAAATGAAAATGCATAACAGTGCATTATCGACATGAAAGAATGCC
Found at i:46826 original size:46 final size:46
Alignment explanation
Indices: 46752--47037 Score: 405
Period size: 46 Copynumber: 6.2 Consensus size: 46
46742 AAATGAATGA
* *
46752 ATAAATGAAAATGCATAACGGTGAATTATAGGCATGAAAGGATGCC
1 ATAAATGAAAATGCATAAAGGTGCATTATAGGCATGAAAGGATGCC
* * * *
46798 ATAAATGAAAATCCATAAATGTGCATTATAGGAATGAAAAGATGCC
1 ATAAATGAAAATGCATAAAGGTGCATTATAGGCATGAAAGGATGCC
46844 ATAAATGAAAATGCATAACA-GTGCATTATAGGCATGAAAGGATGCC
1 ATAAATGAAAATGCATAA-AGGTGCATTATAGGCATGAAAGGATGCC
* *
46890 ATAAATGAAAATGCATAACGGTGCATTATCA-GCATGAAAGGATGTC
1 ATAAATGAAAATGCATAAAGGTGCATTAT-AGGCATGAAAGGATGCC
* * * *
46936 ATAAATGAAAATGTATAATGGTGCATTATCGGCATGAAAGGATGCT
1 ATAAATGAAAATGCATAAAGGTGCATTATAGGCATGAAAGGATGCC
* * *
46982 ATAAATGACAATGCATAACGGTGCATTATAGGCATGAAAAGATGCC
1 ATAAATGAAAATGCATAAAGGTGCATTATAGGCATGAAAGGATGCC
47028 ATAAATGAAA
1 ATAAATGAAA
47038 TAAAGAATAA
Statistics
Matches: 213, Mismatches: 23, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
46 211 0.99
47 2 0.01
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.23
Consensus pattern (46 bp):
ATAAATGAAAATGCATAAAGGTGCATTATAGGCATGAAAGGATGCC
Found at i:47484 original size:101 final size:101
Alignment explanation
Indices: 47309--47516 Score: 389
Period size: 101 Copynumber: 2.1 Consensus size: 101
47299 AGACTAGCCG
47309 AGTAAGGAGTAGTAGCATCAGCTATCATCAATTTAAGGTTGACTCGTCAGTAACAATAGGACAAT
1 AGTAAGGAGTAGTAGCATCAGCTATCATCAATTTAAGGTTGACTCGTCAGTAACAATAGGACAAT
* * *
47374 CCGGTTTATTTTGAAAATTAGTTGGCATGTAATTGA
66 CCGATTTATTTTGAAAAATAGTTGGCATGTAATTAA
47410 AGTAAGGAGTAGTAGCATCAGCTATCATCAATTTAAGGTTGACTCGTCAGTAACAATAGGACAAT
1 AGTAAGGAGTAGTAGCATCAGCTATCATCAATTTAAGGTTGACTCGTCAGTAACAATAGGACAAT
47475 CCGATTTATTTTGAAAAATAGTTGGCATGTAATTAA
66 CCGATTTATTTTGAAAAATAGTTGGCATGTAATTAA
47511 AGTAAG
1 AGTAAG
47517 AAAAATGCTC
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
101 104 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (101 bp):
AGTAAGGAGTAGTAGCATCAGCTATCATCAATTTAAGGTTGACTCGTCAGTAACAATAGGACAAT
CCGATTTATTTTGAAAAATAGTTGGCATGTAATTAA
Found at i:48450 original size:21 final size:21
Alignment explanation
Indices: 48432--48475 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
48422 CGTTAATTTT
**
48432 AAAATTTTTATTTAAAATTAA
1 AAAATTTAAATTTAAAATTAA
48453 AAAATTTAAATTTAAAATTAA
1 AAAATTTAAATTTAAAATTAA
48474 AA
1 AA
48476 TTATATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAATTTAAATTTAAAATTAA
Found at i:48888 original size:2 final size:2
Alignment explanation
Indices: 48881--48947 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
48871 TTTATTTTTA
48881 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48923 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
48948 ATTTTAATTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:50391 original size:28 final size:28
Alignment explanation
Indices: 50347--50401 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
50337 TTCTTAATTT
*
50347 GAGTAAAAAGTCGTATTTAATGTATTAA
1 GAGTAAAAAGTCATATTTAATGTATTAA
*
50375 GAGTAAAAAGTCATATTTGATGTATTA
1 GAGTAAAAAGTCATATTTAATGTATTA
50402 TGACCGTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (28 bp):
GAGTAAAAAGTCATATTTAATGTATTAA
Found at i:52169 original size:74 final size:71
Alignment explanation
Indices: 52036--52171 Score: 193
Period size: 74 Copynumber: 1.9 Consensus size: 71
52026 AGTTAAAATA
* * * *
52036 TCATTTTTATATATTTTTTAAATTCGAAAGTATCGATACTTTTAGAAAAGTATCGATATTTTACA
1 TCATTTTTATATATTTTTTAAATTCGAAAGTATCAATACTTTGAGAAAAATATCAATATTTTACA
52101 ATCTTC
66 ATCTTC
52107 TCATTTTTCATATATATTTATTAAATTCGAAAGTATCAATACTTGTGA-AAAAATATCAATATTT
1 TCATTTTT-ATATAT-TTT-TTAAATTCGAAAGTATCAATACTT-TGAGAAAAATATCAATATTT
52171 T
62 T
52172 CTAAATTCGA
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
71 8 0.14
72 6 0.11
73 3 0.05
74 38 0.67
75 2 0.04
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (71 bp):
TCATTTTTATATATTTTTTAAATTCGAAAGTATCAATACTTTGAGAAAAATATCAATATTTTACA
ATCTTC
Found at i:52206 original size:45 final size:45
Alignment explanation
Indices: 52120--52218 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
52110 TTTTTCATAT
*
52120 ATATTTAT-TAAATTCGAAAGTATCAATACTTGTGAAAAAATATCA
1 ATATTT-TCTAAATTCGAAAGTATCAATACTTGTCAAAAAATATCA
* * * * *
52165 ATATTTTCTAAATTCGAAAGTATTAATACTTTTCCACAAATATTA
1 ATATTTTCTAAATTCGAAAGTATCAATACTTGTCAAAAAATATCA
52210 ATACTTTTC
1 ATA-TTTTC
52219 CACAAGTATT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.02
45 40 0.87
46 5 0.11
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.40
Consensus pattern (45 bp):
ATATTTTCTAAATTCGAAAGTATCAATACTTGTCAAAAAATATCA
Found at i:52210 original size:20 final size:20
Alignment explanation
Indices: 52182--52257 Score: 125
Period size: 20 Copynumber: 3.8 Consensus size: 20
52172 CTAAATTCGA
52182 AAGTATTAATACTTTTCCAC
1 AAGTATTAATACTTTTCCAC
*
52202 AAATATTAATACTTTTCCAC
1 AAGTATTAATACTTTTCCAC
*
52222 AAGTATTGATACTTTTCCAC
1 AAGTATTAATACTTTTCCAC
*
52242 AAGTATTGATACTTTT
1 AAGTATTAATACTTTT
52258 GAATTTAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.42
Consensus pattern (20 bp):
AAGTATTAATACTTTTCCAC
Found at i:52615 original size:76 final size:76
Alignment explanation
Indices: 52488--52786 Score: 305
Period size: 77 Copynumber: 3.9 Consensus size: 76
52478 CAATCTTTTG
* ** * ** *
52488 TAATAAAAATATTAACATTCCATAGAGCAACCTATTTCTTAGTGAGTCATGACATTCTTAGGCGT
1 TAAT-AAAATATTAACATTCCAAATTGCAATCTATTTCTTAGTGAACCATGACATTCTTAGGCGC
*
52553 AA-CTATTTTAT
65 AACCCATTTTAT
* * * * * * *
52564 TAATAAAGATATCAATATTCCAAATTGCAATCTATTTCTTAGTGAGCCATGAAATTTTTTGGTGC
1 TAATAAA-ATATTAACATTCCAAATTGCAATCTATTTCTTAGTGAACCATGACATTCTTAGGCGC
52629 AACCCATTTTAT
65 AACCCATTTTAT
* * * * * *
52641 TAATACAAATATTAACATTTCAGATTG-TATCTTATTTCTTAGTGAACCATAACATTTTTTGGCG
1 TAATA-AAATATTAACATTCCAAATTGCAATC-TATTTCTTAGTGAACCATGACATTCTTAGGCG
52705 CAACCCATTTTAT
64 CAACCCATTTTAT
** * * *
52718 TAATAAAAATATTAACATTCCAAATCACAATTTATTTCTTAGTGAACCATGATAATCTTAGGCGC
1 TAAT-AAAATATTAACATTCCAAATTGCAATCTATTTCTTAGTGAACCATGACATTCTTAGGCGC
52783 AACC
65 AACC
52787 ATATATATAT
Statistics
Matches: 184, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
75 3 0.02
76 54 0.29
77 122 0.66
78 5 0.03
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.37
Consensus pattern (76 bp):
TAATAAAATATTAACATTCCAAATTGCAATCTATTTCTTAGTGAACCATGACATTCTTAGGCGCA
ACCCATTTTAT
Found at i:52794 original size:2 final size:2
Alignment explanation
Indices: 52787--52816 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
52777 AGGCGCAACC
52787 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52817 TCATAACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:54377 original size:22 final size:20
Alignment explanation
Indices: 54351--54396 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
54341 TAATAAAATA
*
54351 TATTTATTCATATTTTTTTTGT
1 TATTTATT-A-ATTTTTTTTCT
*
54373 TATTTATTACTTTTTTTTCT
1 TATTTATTAATTTTTTTTCT
54393 TATT
1 TATT
54397 CCTGTTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 13 0.59
21 1 0.05
22 8 0.36
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (20 bp):
TATTTATTAATTTTTTTTCT
Found at i:54500 original size:5 final size:4
Alignment explanation
Indices: 54478--54525 Score: 53
Period size: 4 Copynumber: 11.8 Consensus size: 4
54468 CTTTACGTTA
* *
54478 ATTT ATTT ATTT ATTT AATTT AATT -TTT ATTT ACTT ATTT ATTAT ATT
1 ATTT ATTT ATTT ATTT -ATTT ATTT ATTT ATTT ATTT ATTT ATT-T ATT
54526 ATTATTATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
3 2 0.05
4 27 0.73
5 8 0.22
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (4 bp):
ATTT
Found at i:54653 original size:30 final size:29
Alignment explanation
Indices: 54586--54669 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 29
54576 TTTATTTTCA
*
54586 TTTC-TTTTATTTATTTATTTTTTACCTT
1 TTTCATTTTTTTTATTTATTTTTTACCTT
** *
54614 ACTCTATTTTTTTTATTTATTGTTTTACTTT
1 TTTC-ATTTTTTTTATTTATT-TTTTACCTT
54645 TTTCATTTTTCCTTTATTTTATTTT
1 TTTCATTTTT--TTTA-TTTATTTT
54670 CCTTATTTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
28 2 0.05
30 20 0.45
31 10 0.23
32 6 0.14
33 6 0.14
ACGTcount: A:0.14, C:0.11, G:0.01, T:0.74
Consensus pattern (29 bp):
TTTCATTTTTTTTATTTATTTTTTACCTT
Found at i:54677 original size:14 final size:15
Alignment explanation
Indices: 54651--54682 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
54641 CTTTTTTCAT
54651 TTTTCCTTTATTTTA
1 TTTTCCTTTATTTTA
54666 TTTTCC-TTATTTTA
1 TTTTCCTTTATTTTA
54680 TTT
1 TTT
54683 ATTTTCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTCCTTTATTTTA
Found at i:63493 original size:9 final size:9
Alignment explanation
Indices: 63479--63508 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
63469 GTTCTAAGTC
*
63479 GAAGAAGAA
1 GAAGAAAAA
63488 GAAGAAAAA
1 GAAGAAAAA
63497 GAAGAAAAA
1 GAAGAAAAA
63506 GAA
1 GAA
63509 AAAGAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (9 bp):
GAAGAAAAA
Found at i:63500 original size:15 final size:15
Alignment explanation
Indices: 63480--63518 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
63470 TTCTAAGTCG
*
63480 AAGAAGAAGAAGAAA
1 AAGAAGAAAAAGAAA
63495 AAGAAGAAAAAGAAA
1 AAGAAGAAAAAGAAA
63510 AAGAA-AAAA
1 AAGAAGAAAA
63519 CGTTTAGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAGAAGAAAAAGAAA
Found at i:63584 original size:26 final size:26
Alignment explanation
Indices: 63555--63604 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
63545 ACCCTAAATT
*
63555 GAAAAGA-AAAGAGAGAAAATAAAAAA
1 GAAAAGAGAAA-AGAGAAAAGAAAAAA
63581 GAAAAGAGAAAAGAGAAAAGAAAA
1 GAAAAGAGAAAAGAGAAAAGAAAA
63605 TAAATAAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (26 bp):
GAAAAGAGAAAAGAGAAAAGAAAAAA
Found at i:63585 original size:12 final size:13
Alignment explanation
Indices: 63555--63604 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
63545 ACCCTAAATT
63555 GAAAAGAAAAGAGA
1 GAAAAGAAAA-AGA
*
63569 GAAAATAAAAA-A
1 GAAAAGAAAAAGA
63581 GAAAAGAGAAAAGA
1 GAAAAGA-AAAAGA
63595 GAAAAGAAAA
1 GAAAAGAAAA
63605 TAAATAAGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 7 0.22
13 8 0.25
14 17 0.53
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (13 bp):
GAAAAGAAAAAGA
Found at i:63599 original size:21 final size:21
Alignment explanation
Indices: 63556--63604 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
63546 CCCTAAATTG
*
63556 AAAAGAAAAGAGAGAAAATAA
1 AAAAGAAAAGAGAGAAAAGAA
*
63577 AAAAG-AAA-AGAGAAAAGAG
1 AAAAGAAAAGAGAGAAAAGAA
63596 AAAAGAAAA
1 AAAAGAAAA
63605 TAAATAAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 14 0.56
20 6 0.24
21 5 0.20
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAAGAAAAGAGAGAAAAGAA
Found at i:63600 original size:7 final size:7
Alignment explanation
Indices: 63555--63601 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
63545 ACCCTAAATT
63555 GAAAAGA
1 GAAAAGA
63562 -AAAGAGA
1 GAAA-AGA
*
63569 GAAAATA
1 GAAAAGA
63576 -AAAA-A
1 GAAAAGA
63581 GAAAAGA
1 GAAAAGA
63588 GAAAAGA
1 GAAAAGA
63595 GAAAAGA
1 GAAAAGA
63602 AAATAAATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
5 1 0.03
6 11 0.31
7 20 0.57
8 3 0.09
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.02
Consensus pattern (7 bp):
GAAAAGA
Found at i:64633 original size:124 final size:124
Alignment explanation
Indices: 64469--64895 Score: 603
Period size: 124 Copynumber: 3.5 Consensus size: 124
64459 ATCTCAAGAC
**
64469 TGGATTTCAACTTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATC
1 TGGATTTCAACTTCACGACAAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATC
* *
64534 CATGATTTCAACTTCATGACAAAGGATATCGTTCCCACCAGCAACATCCATCATTAGAT
66 CACGATTTCAACTTCATGACAAAGGATATCGTGCCCACCAGCAACATCCATCATTAGAT
* *
64593 TGGATTTCAACTTCACGACAAAGGATATCCAATTCGAGGCTCAACTTCACAATGAAGGGGCCATC
1 TGGATTTCAACTTCACGACAAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATC
* * *
64658 CACGATTTCAACTTTATGACGAAA-GATATCGTGCCCACAAGCAAC-T-TATTCA--AGAT
66 CACGATTTCAACTTCATGAC-AAAGGATATCGTGCCCACCAGCAACATCCA-TCATTAGAT
* * *
64714 TGTATTTCAACTTCACGACAAAGGATATCCAATTCAAGACTCAACTTCATAACGAAGGGGCCATC
1 TGGATTTCAACTTCACGACAAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATC
* * *
64779 CACGATTTCAACTTCACGACGAAGGATATCGTGCCCACCAGCAACATCCATCTTTAGAT
66 CACGATTTCAACTTCATGACAAAGGATATCGTGCCCACCAGCAACATCCATCATTAGAT
* * * * * * *
64838 TGTATTTCAACTTCACAACGAATGATATCCAATTCAAAGCTCAACTTCAGAGCGAAGG
1 TGGATTTCAACTTCACGACAAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGG
64896 AGCTTCTGTC
Statistics
Matches: 269, Mismatches: 27, Indels: 14
0.87 0.09 0.05
Matches are distributed among these distances:
120 2 0.01
121 102 0.38
122 4 0.01
123 5 0.02
124 153 0.57
125 3 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (124 bp):
TGGATTTCAACTTCACGACAAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATC
CACGATTTCAACTTCATGACAAAGGATATCGTGCCCACCAGCAACATCCATCATTAGAT
Found at i:67821 original size:19 final size:19
Alignment explanation
Indices: 67797--67839 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
67787 GACATCCTTT
67797 TATGCCGATAATGCACCTA
1 TATGCCGATAATGCACCTA
67816 TATGCCGATAATGCACCTA
1 TATGCCGATAATGCACCTA
67835 TATGC
1 TATGC
67840 ATTTCAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (19 bp):
TATGCCGATAATGCACCTA
Found at i:67854 original size:64 final size:64
Alignment explanation
Indices: 67753--67884 Score: 246
Period size: 64 Copynumber: 2.1 Consensus size: 64
67743 AAATCCTTTC
*
67753 ATGCCGATAATGCACCCATATGCATTTCAATTATGACATCCTTTTATGCCGATAATGCACCTAT
1 ATGCCGATAATGCACCCATATGCATTTCAATTATGACATCCTTTCATGCCGATAATGCACCTAT
*
67817 ATGCCGATAATGCACCTATATGCATTTCAATTATGACATCCTTTCATGCCGATAATGCACCTAT
1 ATGCCGATAATGCACCCATATGCATTTCAATTATGACATCCTTTCATGCCGATAATGCACCTAT
67881 ATGC
1 ATGC
67885 ATTTCAATTT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.33
Consensus pattern (64 bp):
ATGCCGATAATGCACCCATATGCATTTCAATTATGACATCCTTTCATGCCGATAATGCACCTAT
Found at i:67881 original size:45 final size:45
Alignment explanation
Indices: 67817--68091 Score: 347
Period size: 45 Copynumber: 6.1 Consensus size: 45
67807 ATGCACCTAT
67817 ATGCCGATAATGCACCTATATGCATTTCAATTATGACATCCTTTC
1 ATGCCGATAATGCACCTATATGCATTTCAATTATGACATCCTTTC
* * *
67862 ATGCCGATAATGCACCTATATGCATTTCAATTTTGAAATCCTTTA
1 ATGCCGATAATGCACCTATATGCATTTCAATTATGACATCCTTTC
* * * *
67907 AAGCCGATAATGCACCCATATGCATTTCAATTATAACATCATTTC
1 ATGCCGATAATGCACCTATATGCATTTCAATTATGACATCCTTTC
*
67952 ATGCCGATAATGCACCCATATGCATTTCAATTATGACATCCTTTC
1 ATGCCGATAATGCACCTATATGCATTTCAATTATGACATCCTTTC
* * *
67997 ATGTCGATAATGCACTCT-TACGCATTTCAATTATGACATCATTTC
1 ATGCCGATAATGCAC-CTATATGCATTTCAATTATGACATCCTTTC
** * * * * * *
68042 ATGCCTTTTATACA-TTACTATACATTTCATTTATGGCATCCTTTC
1 ATGCCGATAATGCACCTA-TATGCATTTCAATTATGACATCCTTTC
68087 ATGCC
1 ATGCC
68092 ATTTATGTAC
Statistics
Matches: 199, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
43 1 0.01
45 197 0.99
46 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (45 bp):
ATGCCGATAATGCACCTATATGCATTTCAATTATGACATCCTTTC
Found at i:68297 original size:81 final size:81
Alignment explanation
Indices: 68159--68706 Score: 753
Period size: 81 Copynumber: 6.8 Consensus size: 81
68149 ACATTTAGCT
* * *
68159 TTCATCTAACTTGCATAATTGACA-CTTCTCTGTCAAATGCACAGTTAGGCCATTAATCTTTTAC
1 TTCATCTAACTGGCATAATTGACACCTT-TCTGCCAAATGCACAGCTAGGCCATTAATCTTTTAC
*
68223 TCAACGATACTTAACCG
65 TCAACGATATTTAACCG
* * * ** *
68240 TTAATCTAACTGGTATAATTGACACCTTTCTGCCAAATGCACAACTGAATCGA-TAATCTTTTAC
1 TTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCT-AGGCCATTAATCTTTTAC
*
68304 TAAAC-AGTATTTAACCG
65 TCAACGA-TATTTAACCG
* * **
68321 TTCATCTAACTAGCATAATTGACACCTTTCTACCAAATGCACAGCTAGAACATTAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACT
*
68386 CAATGATATTTAACCG
66 CAACGATATTTAACCG
* * *
68402 TTCATCTAATTGGCATAATTGACACATTTCTGCCAAATGCATAGCTAGGCCATTAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACT
*
68467 CAACGGTATTT-ACGCG
66 CAACGATATTTAAC-CG
* * *
68483 TTCATCTAACTGACATAATTGACACCTTTCTGCCAAATGTACAGCTAGGCCATAAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACT
68548 CAACGATATTTAACCG
66 CAACGATATTTAACCG
* *
68564 TTCATCTAACTAGCATAATTGACACTTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACT
68629 CAACGATATTTAACCG
66 CAACGATATTTAACCG
** * * * *
68645 TTCATCTAACTGAAATAATTGACACCTTTCTGTCAAATGCATAGCTATGCCATTAATTTTTT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTT
68707 GCTTTTGGAA
Statistics
Matches: 409, Mismatches: 51, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
80 5 0.01
81 395 0.97
82 9 0.02
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (81 bp):
TTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACT
CAACGATATTTAACCG
Done.