genome.fa.s8502.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008502.1 Hibiscus syriacus cultivar Beakdansim tig00111354_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71499

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898--978	24	3.5	24	70	20	75	22	24	22	30	1.99
3051--3127	24	3.6	22	77	14	74	29	19	25	24	1.98
5782--5824	21	2.0	21	81	0	50	9	44	16	30	1.79
6968--7055	45	1.9	46	90	2	142	28	25	18	28	1.98
8509--8564	22	2.6	22	94	2	96	33	14	14	37	1.86
8874--9444	113	4.9	111	82	10	632	38	15	18	27	1.91
8874--9444	235	2.5	224	83	10	654	38	15	18	27	1.91
9112--9613	124	4.0	122	78	11	510	41	15	16	27	1.88
9443--10038	294	2.0	294	100	0	1192	40	16	13	29	1.86
10087--10200	14	8.0	13	70	19	50	26	2	1	69	1.11
10107--10210	3	35.0	3	81	11	117	30	1	0	66	1.09
11461--11520	23	2.7	21	78	14	66	26	5	3	65	1.29
11460--11533	23	3.3	22	73	16	62	27	6	4	62	1.39
11537--11578	2	21.0	2	90	0	66	50	0	2	47	1.14
11590--11969	147	2.6	147	80	12	385	41	6	6	45	1.55
11591--12017	149	2.9	147	76	13	345	41	7	5	45	1.55
17182--17219	14	2.6	14	91	4	58	65	2	2	28	1.19
20681--20709	2	14.5	2	100	0	58	48	0	0	51	1.00
22363--22468	41	2.6	41	87	0	158	19	16	24	38	1.92
22391--22460	20	3.5	20	72	3	68	11	20	27	41	1.86
22410--22472	20	3.1	21	72	6	58	17	19	30	33	1.95
22509--22603	21	4.6	21	81	2	129	22	15	27	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22509--22626	62	1.9	62	96	0	218	20	16	26	36	1.94
22733--22761	6	5.0	6	95	4	51	31	51	17	0	1.45
23373--23479	19	5.3	19	70	12	79	39	21	20	18	1.93
23366--23623	82	3.1	82	87	6	355	37	23	20	18	1.94
23388--23647	21	12.6	21	70	14	123	35	24	21	18	1.95
23382--23602	41	5.4	42	94	2	328	37	23	22	16	1.94
23553--23688	62	2.2	62	94	2	238	33	26	19	19	1.96
23512--23708	103	1.9	103	91	4	326	35	25	21	17	1.95
23615--23708	41	2.3	41	100	0	188	36	25	20	18	1.95
23423--23667	82	3.0	81	83	7	221	36	24	22	17	1.95
23594--23688	21	4.6	21	84	2	138	32	27	17	22	1.96
25640--25742	15	6.5	15	78	15	109	45	0	2	51	1.16
25722--26374	32	23.7	31	71	26	452	36	0	11	52	1.37
25722--26364	54	11.8	54	85	6	888	36	0	11	52	1.37
25831--25883	14	3.5	14	72	18	52	37	0	3	58	1.16
25890--25950	22	2.8	22	100	0	122	36	0	13	50	1.41
25893--26030	22	6.7	20	72	21	83	36	0	12	51	1.40
25970--26030	22	2.8	22	97	0	113	37	0	11	50	1.39
26074--26116	22	2.0	22	95	0	77	37	0	11	51	1.39
26128--26170	22	2.0	22	95	0	77	37	0	13	48	1.43
26182--26224	22	2.0	22	100	0	86	34	0	13	51	1.42
26236--26278	22	2.0	22	100	0	86	34	0	13	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26321--26373	14	3.5	14	72	18	52	37	0	5	56	1.23
26389--26447	31	1.9	31	96	0	109	42	8	6	42	1.61
27497--27548	14	3.5	14	73	14	50	50	1	0	48	1.12
29350--29388	20	2.0	19	85	5	51	48	7	0	43	1.31
29716--29789	29	2.6	28	76	4	85	48	10	13	27	1.75
30300--30356	23	2.5	23	100	0	114	52	17	3	26	1.60
31204--31304	2	50.5	2	100	0	202	49	0	0	50	1.00
35091--35170	31	2.6	31	78	11	92	41	1	5	52	1.31
35317--35370	23	2.3	23	96	0	99	53	3	0	42	1.18
40894--40976	21	3.9	21	78	9	78	25	34	24	15	1.95
44809--44895	31	2.8	30	81	10	95	54	3	1	41	1.25
52785--52852	24	2.8	26	87	10	92	44	0	1	54	1.09
52762--52954	62	3.2	62	91	5	306	43	0	1	55	1.09
52835--52907	25	2.8	26	78	17	89	42	0	0	57	0.98
52809--52922	37	3.1	38	76	17	105	42	0	0	56	1.05
52749--52954	25	8.9	23	69	20	85	42	0	1	56	1.08
53466--53525	31	1.9	31	93	0	102	43	10	6	40	1.64
56145--56368	124	1.8	123	87	0	331	23	17	15	43	1.87
56287--57040	113	6.7	113	89	2	1102	28	18	14	37	1.90
56759--56804	23	2.0	23	83	12	58	15	23	6	54	1.64
57373--57572	95	2.1	95	100	0	400	32	16	15	36	1.90
57988--58375	83	4.7	83	99	0	758	38	23	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57899--58375	166	2.8	166	94	2	801	37	23	12	25	1.90
57899--58375	249	1.9	254	92	3	811	37	23	12	25	1.90
66937--66968	15	2.1	15	94	0	55	46	9	18	25	1.79
70208--70251	22	2.1	22	87	8	65	59	2	2	36	1.23

Tables:   1

The End!