Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008503.1 Hibiscus syriacus cultivar Beakdansim tig00111355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62977

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4820--4897
30
2.6
29
80
11
86
51
3
1
43
1.28
12673--12748
23
3.5
21
80
19
86
39
0
1
59
1.06
12683--12741
24
2.5
23
89
8
84
42
0
1
55
1.09
12652--12863
61
3.5
61
87
10
292
41
0
2
56
1.12
12764--12845
36
2.2
37
81
14
89
45
0
2
52
1.14
13352--13411
31
1.9
31
93
0
102
43
10
6
40
1.64
16154--16897
111
6.6
112
87
5
1008
28
19
14
38
1.90
16619--16664
23
2.0
23
83
12
58
15
23
6
54
1.64
16152--16897
223
3.3
223
87
5
1044
28
19
14
38
1.90
17225--17423
94
2.1
95
99
0
391
32
16
15
36
1.90
17747--18215
164
2.8
165
91
5
734
37
24
12
26
1.90
17835--18215
83
4.7
83
96
2
704
37
24
12
25
1.90
26764--26795
15
2.1
15
94
0
55
46
9
18
25
1.79
30088--30137
24
2.1
24
85
7
66
62
2
2
34
1.18
30088--30138
26
2.0
24
81
7
57
62
1
1
33
1.17
32224--32273
3
16.0
3
79
8
55
60
0
0
40
0.97
32981--33016
2
18.0
2
100
0
72
50
0
0
50
1.00
34093--34132
18
2.3
18
87
8
57
37
0
5
57
1.21
34310--34363
21
2.7
20
75
13
65
38
12
7
40
1.72
38575--38604
2
15.0
2
92
0
51
46
0
3
50
1.18
44033--44129
45
2.2
45
84
0
122
18
11
31
38
1.86
45658--45707
15
3.2
16
75
13
50
42
6
16
36
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45642--45735
45
2.1
44
84
2
116
39
6
17
37
1.75
52922--53016
46
2.1
46
84
4
120
17
22
23
36
1.95
52922--53016
23
4.1
23
77
0
91
17
22
23
36
1.95
52936--53032
23
4.2
23
78
2
79
19
21
23
35
1.96
53157--53184
2
14.0
2
100
0
56
50
0
0
50
1.00
55733--55808
21
3.6
21
75
10
73
27
14
27
30
1.95

Tables:   1

The End!