Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008504.1 Hibiscus syriacus cultivar Beakdansim tig00111356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2056749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 10
Found at i:787302 original size:2 final size:2
Alignment explanation
Indices: 787295--787327 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
787285 GAAATCTAAC
787295 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
787328 AGAAACGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:787660 original size:2 final size:2
Alignment explanation
Indices: 787653--787689 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
787643 GTAACTCTTT
787653 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
787690 CTTCTCCCCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:787959 original size:38 final size:37
Alignment explanation
Indices: 787917--788028 Score: 98
Period size: 38 Copynumber: 3.2 Consensus size: 37
787907 TCTAGAAACG
787917 AAAATATATTATCAATAGAAAACACAAAGAAAATATCT
1 AAAATATATTATCAATAGAAAA-ACAAAGAAAATATCT
** *
787955 AAAATATATTAT-AATTTAAAATCAAAG-----A---
1 AAAATATATTATCAATAGAAAAACAAAGAAAATATCT
* *
787983 AAAATATATTATCAATAGAAAATATAAATAAAATATCT
1 AAAATATATTATCAATAGAAAA-ACAAAGAAAATATCT
788021 AAAATATA
1 AAAATATA
788029 ACACAATTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 20
0.67 0.10 0.24
Matches are distributed among these distances:
28 12 0.21
29 7 0.12
30 3 0.05
31 1 0.02
35 1 0.02
36 5 0.09
37 7 0.12
38 20 0.36
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.29
Consensus pattern (37 bp):
AAAATATATTATCAATAGAAAAACAAAGAAAATATCT
Found at i:788015 original size:29 final size:29
Alignment explanation
Indices: 787954--788018 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
787944 AGAAAATATC
**
787954 TAAAATATATTATAATTTAAAATCAAAGA
1 TAAAATATATTATAATAGAAAATCAAAGA
787983 -AAAATATATTATCAATAGAAAAT-ATAA-A
1 TAAAATATATTAT-AATAGAAAATCA-AAGA
788011 TAAAATAT
1 TAAAATAT
788019 CTAAAATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 14 0.45
29 17 0.55
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (29 bp):
TAAAATATATTATAATAGAAAATCAAAGA
Found at i:791054 original size:14 final size:14
Alignment explanation
Indices: 791035--791062 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
791025 TTTTTGATAG
791035 TTGGAAAATATTTT
1 TTGGAAAATATTTT
791049 TTGGAAAATATTTT
1 TTGGAAAATATTTT
791063 CCTGCGCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (14 bp):
TTGGAAAATATTTT
Found at i:791268 original size:16 final size:16
Alignment explanation
Indices: 791202--791269 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
791192 TTATTTTATT
*
791202 TATTTAATATTAATATAA
1 TATTTAATA-T-ATAAAA
791220 TATTTTAATATA-AAAA
1 TA-TTTAATATATAAAA
*
791236 TA-GTAAT-TATTAAAA
1 TATTTAATATA-TAAAA
*
791251 TATTTAATATATATAA
1 TATTTAATATATAAAA
791267 TAT
1 TAT
791270 AATTCTAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
13 2 0.05
14 4 0.10
15 6 0.15
16 16 0.39
17 3 0.07
18 3 0.07
19 7 0.17
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (16 bp):
TATTTAATATATAAAA
Found at i:791283 original size:30 final size:31
Alignment explanation
Indices: 791216--791284 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
791206 TAATATTAAT
*
791216 ATAATATTTTAATATAAAAATAGTAATTATTA
1 ATAATA-TTTAATATAAAAATAGTAATTACTA
*
791248 A-AATATTTAATATATATAATA-TAATT-CTA
1 ATAATATTTAATATA-AAAATAGTAATTACTA
791277 ATAATATT
1 ATAATATT
791285 ATATTAACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
29 3 0.09
30 20 0.61
31 9 0.27
32 1 0.03
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (31 bp):
ATAATATTTAATATAAAAATAGTAATTACTA
Found at i:791822 original size:16 final size:16
Alignment explanation
Indices: 791753--791823 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
791743 GGTATTACCC
791753 GACCTATTTTCAACCT
1 GACCTATTTTCAACCT
* *
791769 GACATGTTTTCAACCT
1 GACCTATTTTCAACCT
* * *
791785 GGCCTGTTTTTAACCT
1 GACCTATTTTCAACCT
*
791801 GACCTATTTTTAACCT
1 GACCTATTTTCAACCT
791817 GACCTAT
1 GACCTAT
791824 AAATGATCCG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.39
Consensus pattern (16 bp):
GACCTATTTTCAACCT
Found at i:792117 original size:23 final size:24
Alignment explanation
Indices: 792079--792128 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
792069 ATGCAAAGGA
*
792079 AAATTAATATAGTTTAATTTATAT
1 AAATTAATATAATTTAATTTATAT
792103 AAATT-ATATAATTTAATTTATAT
1 AAATTAATATAATTTAATTTATAT
792126 AAA
1 AAA
792129 GAAAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
AAATTAATATAATTTAATTTATAT
Found at i:792617 original size:17 final size:19
Alignment explanation
Indices: 792565--792607 Score: 77
Period size: 19 Copynumber: 2.2 Consensus size: 19
792555 TTTTTCTATC
792565 CCCTCTAAATTTCTCAATTT
1 CCCTCTAAA-TTCTCAATTT
792585 CCCTCTAAATTCTCAATTT
1 CCCTCTAAATTCTCAATTT
792604 CCCT
1 CCCT
792608 ATATTCTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.23, C:0.35, G:0.00, T:0.42
Consensus pattern (19 bp):
CCCTCTAAATTCTCAATTT
Found at i:792723 original size:2 final size:2
Alignment explanation
Indices: 792712--792760 Score: 57
Period size: 2 Copynumber: 25.0 Consensus size: 2
792702 ACTCACTTTG
* *
792712 TA TA -A TA TA TA TA TA TA -A GTA TA TA CA TA AA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
792753 TA TA TA TA
1 TA TA TA TA
792761 ATTAAAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.93
3 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (2 bp):
TA
Found at i:793206 original size:2 final size:2
Alignment explanation
Indices: 793199--793225 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
793189 TATGTTTAAT
793199 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
793226 TCAAAGTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:793355 original size:19 final size:20
Alignment explanation
Indices: 793331--793374 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
793321 TTGAGAATAT
*
793331 AGGGAAATCGG-GAATTTAG
1 AGGGAAATCGGAAAATTTAG
*
793350 AGGG-AATTGGAAAATTTAG
1 AGGGAAATCGGAAAATTTAG
793369 AGGGAA
1 AGGGAA
793375 TAGAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 5 0.24
19 15 0.71
20 1 0.05
ACGTcount: A:0.41, C:0.02, G:0.36, T:0.20
Consensus pattern (20 bp):
AGGGAAATCGGAAAATTTAG
Found at i:793382 original size:18 final size:19
Alignment explanation
Indices: 793343--793384 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
793333 GGAAATCGGG
*
793343 AATTTAGAGGGAATTGGAA
1 AATTTAGAGGGAATTAGAA
793362 AATTTAGAGGGAA-TAGAA
1 AATTTAGAGGGAATTAGAA
793380 AATTT
1 AATTT
793385 GAGAAGTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.29
Consensus pattern (19 bp):
AATTTAGAGGGAATTAGAA
Found at i:793625 original size:14 final size:14
Alignment explanation
Indices: 793608--793665 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
793598 TATATAAACC
793608 TTAAACCCTAAACT-
1 TTAAACCCTAAA-TA
*
793622 TTAAACCATAAATA
1 TTAAACCCTAAATA
* *
793636 ATAAACCCTAAATC
1 TTAAACCCTAAATA
*
793650 CTAAACCCTAATATA
1 TTAAACCCTAA-ATA
793665 T
1 T
793666 GTATAAACCA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
13 1 0.03
14 32 0.91
15 2 0.06
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (14 bp):
TTAAACCCTAAATA
Found at i:793712 original size:14 final size:13
Alignment explanation
Indices: 793683--793736 Score: 69
Period size: 13 Copynumber: 4.3 Consensus size: 13
793673 CCATGTATAG
793683 TATATATAAACTA
1 TATATATAAACTA
*
793696 TATATATAGACCTA
1 TATATATA-AACTA
793710 TATATAT--A-TA
1 TATATATAAACTA
793720 TATATATAAACTA
1 TATATATAAACTA
793733 TATA
1 TATA
793737 AAGTAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
10 9 0.26
12 1 0.03
13 14 0.40
14 11 0.31
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (13 bp):
TATATATAAACTA
Found at i:793921 original size:13 final size:14
Alignment explanation
Indices: 793891--794092 Score: 70
Period size: 15 Copynumber: 14.3 Consensus size: 14
793881 CTATATATTT
793891 TATATAGTTTATACA
1 TATATAGTTTATA-A
793906 TATATAGTTTAT-A
1 TATATAGTTTATAA
* *
793919 TATATA-TATATAC
1 TATATAGTTTATAA
* *
793932 TATATTAATATA-AA
1 TATA-TAGTTTATAA
*
793946 TA-ATATTTTATAAA
1 TATATAGTTTAT-AA
*
793960 CTATATA-CTT-T--
1 -TATATAGTTTATAA
793971 T-TATAGTTTATATA
1 TATATAGTTTATA-A
*
793985 CTTTTTATAGTTTATACA
1 --TAT-ATAGTTTATA-A
*
794003 TACATAGTTTAT-A
1 TATATAGTTTATAA
*
794016 TACATAGTTTAT-A
1 TATATAGTTTATAA
*
794029 TATATAGTTCACATAA
1 TATATAGTT--TATAA
* *
794045 -ACATAATTTAT-A
1 TATATAGTTTATAA
794057 TATATAGCTTATAATAA
1 TATATAG-TT-T-ATAA
794074 TTATATAGTTTATAA
1 -TATATAGTTTATAA
794089 TATA
1 TATA
794093 AATATAGTTT
Statistics
Matches: 145, Mismatches: 17, Indels: 51
0.68 0.08 0.24
Matches are distributed among these distances:
9 4 0.03
10 3 0.02
11 1 0.01
12 10 0.07
13 40 0.28
14 14 0.10
15 42 0.29
16 9 0.06
17 4 0.03
18 18 0.12
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (14 bp):
TATATAGTTTATAA
Found at i:793935 original size:15 final size:15
Alignment explanation
Indices: 793843--793936 Score: 50
Period size: 15 Copynumber: 6.3 Consensus size: 15
793833 TAATGCATAC
793843 ATATATATACTATAT
1 ATATATATACTATAT
* *
793858 -TAATATAAATTATA-
1 AT-ATATATACTATAT
* *
793872 ACATATAAACTATAT
1 ATATATATACTATAT
* * *
793887 ATTTTATATAGTTTAT
1 A-TATATATACTATAT
* * *
793903 ACATATATAGTTTAT
1 ATATATATACTATAT
793918 ATATATATA-TATACT
1 ATATATATACTATA-T
793933 ATAT
1 ATAT
793937 TAATATAAAT
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
14 15 0.25
15 36 0.59
16 10 0.16
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (15 bp):
ATATATATACTATAT
Found at i:793974 original size:18 final size:18
Alignment explanation
Indices: 793951--793993 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
793941 ATAAATAATA
793951 TTTTATAAACTATATACT
1 TTTTATAAACTATATACT
***
793969 TTTTATAGTTTATATACT
1 TTTTATAAACTATATACT
793987 TTTTATA
1 TTTTATA
793994 GTTTATACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (18 bp):
TTTTATAAACTATATACT
Found at i:793994 original size:18 final size:18
Alignment explanation
Indices: 793961--794000 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
793951 TTTTATAAAC
793961 TATATACTTTTTATAGTT
1 TATATACTTTTTATAGTT
793979 TATATACTTTTTATAGTT
1 TATATACTTTTTATAGTT
793997 TATA
1 TATA
794001 CATACATAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (18 bp):
TATATACTTTTTATAGTT
Found at i:794011 original size:15 final size:14
Alignment explanation
Indices: 793991--794072 Score: 64
Period size: 13 Copynumber: 5.9 Consensus size: 14
793981 TATACTTTTT
793991 ATAGTTTATACATAC
1 ATAGTTTATA-ATAC
794006 ATAGTTTAT-ATAC
1 ATAGTTTATAATAC
*
794019 ATAGTTTAT-ATAT
1 ATAGTTTATAATAC
*
794032 ATAGTTCACATAA-AC
1 ATAGTT--TATAATAC
* *
794047 ATAATTTAT-ATAT
1 ATAGTTTATAATAC
*
794060 ATAGCTTATAATA
1 ATAGTTTATAATA
794073 ATTATATAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
12 1 0.02
13 32 0.59
14 3 0.06
15 17 0.31
16 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (14 bp):
ATAGTTTATAATAC
Found at i:794036 original size:41 final size:46
Alignment explanation
Indices: 793990--794087 Score: 107
Period size: 41 Copynumber: 2.2 Consensus size: 46
793980 ATATACTTTT
* *
793990 TATAGTTTATACATACATAGTTTATATACATAG-TT-T-AT-A-TA
1 TATAGTTTATACAAACATAATTTATATACATAGCTTATAATAATTA
* * * *
794031 TATAGTTCACATAAACATAATTTATATATATAGCTTATAATAATTA
1 TATAGTTTATACAAACATAATTTATATACATAGCTTATAATAATTA
794077 TATAGTTTATA
1 TATAGTTTATA
794088 ATATAAATAT
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
41 27 0.61
42 2 0.05
43 1 0.02
44 2 0.05
45 1 0.02
46 11 0.25
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (46 bp):
TATAGTTTATACAAACATAATTTATATACATAGCTTATAATAATTA
Found at i:794097 original size:18 final size:18
Alignment explanation
Indices: 794053--794205 Score: 79
Period size: 18 Copynumber: 8.3 Consensus size: 18
794043 AAACATAATT
* *
794053 TATATATATAGCTTATAA
1 TATAAATATAGTTTATAA
*
794071 TA-ATTATATAGTTTATAA
1 TATA-AATATAGTTTATAA
794089 TATAAATATAGTTTATAA
1 TATAAATATAGTTTATAA
* *
794107 TTTTATATACGTAGTTTAT--
1 -TATAAATA--TAGTTTATAA
*
794126 T-T--ATATAGTTCACATAAA
1 TATAAATATAGTT--TAT-AA
*
794144 TATAATATATA-TATATATA
1 TATAA-ATATAGTTTATA-A
794163 TATAACTATATAGTTTATAA
1 TATAA--ATATAGTTTATAA
794183 TATAAATAATAGTTTAT-A
1 TATAAAT-ATAGTTTATAA
794201 TATAA
1 TATAA
794206 TTTTATATTA
Statistics
Matches: 109, Mismatches: 8, Indels: 36
0.71 0.05 0.24
Matches are distributed among these distances:
13 5 0.05
15 5 0.05
17 2 0.02
18 41 0.38
19 25 0.23
20 12 0.11
21 14 0.13
22 5 0.05
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.46
Consensus pattern (18 bp):
TATAAATATAGTTTATAA
Found at i:794131 original size:98 final size:95
Alignment explanation
Indices: 794010--794200 Score: 294
Period size: 98 Copynumber: 2.0 Consensus size: 95
794000 ACATACATAG
* *
794010 TTTATATACATAGTTTATATATATAGTTCACATAAACATAATTTATATATATAGCTTATAATAAT
1 TTTATATACATAGTTTATATATATAGTTCACATAAACATAATATATATATATA---TAT-ATAAC
794075 TATATAGTTTATAATATAAAT-ATAGTTTATAAT
62 TATATAGTTTATAATATAAATAATAGTTTATAAT
* * *
794108 TTTATATACGTAGTTTATTTATATAGTTCACATAAATATAATATATATATATATATATAACTATA
1 TTTATATACATAGTTTATATATATAGTTCACATAAACATAATATATATATATATATATAACTATA
794173 TAGTTTATAATATAAATAATAGTTTATA
66 TAGTTTATAATATAAATAATAGTTTATA
794201 TATAATTTTA
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
94 25 0.29
95 13 0.15
98 49 0.56
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (95 bp):
TTTATATACATAGTTTATATATATAGTTCACATAAACATAATATATATATATATATATAACTATA
TAGTTTATAATATAAATAATAGTTTATAAT
Found at i:794155 original size:2 final size:2
Alignment explanation
Indices: 794143--794233 Score: 63
Period size: 2 Copynumber: 48.0 Consensus size: 2
794133 GTTCACATAA
*
794143 AT AT A- AT AT AT AT AT AT AT AT AT A- ACT AT AT AGT TT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT
* * *
794184 AT AA AT A- AT AGT TT AT AT AT A- AT -T TT AT AT -T AT AT AT AT
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
794223 AT AT AT -T AT AT
1 AT AT AT AT AT AT
794234 TTTTTTCAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 22
0.71 0.07 0.22
Matches are distributed among these distances:
1 8 0.11
2 60 0.85
3 3 0.04
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:800527 original size:2 final size:2
Alignment explanation
Indices: 800520--800548 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
800510 TGTTTCATTA
800520 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
800549 CACGTGTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:811770 original size:15 final size:16
Alignment explanation
Indices: 811750--811779 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
811740 ACTATCTTTA
811750 AATCAA-TTTTCAAAC
1 AATCAACTTTTCAAAC
811765 AATCAACTTTTCAAA
1 AATCAACTTTTCAAA
811780 TTTGTTTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCAACTTTTCAAAC
Found at i:823589 original size:22 final size:22
Alignment explanation
Indices: 823558--823615 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 22
823548 GCAAATCAAC
* *
823558 TGAAACTATTTCTATATTTAAT
1 TGAAAATATTTCTACATTTAAT
*
823580 TGAAAATA-TTATACATTTAAT
1 TGAAAATATTTCTACATTTAAT
*
823601 T-ATAAGTATTTCTAC
1 TGA-AAATATTTCTAC
823616 TCACAATCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
20 1 0.03
21 16 0.55
22 12 0.41
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.47
Consensus pattern (22 bp):
TGAAAATATTTCTACATTTAAT
Found at i:838781 original size:28 final size:28
Alignment explanation
Indices: 838748--838807 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
838738 ATGTAAAATT
*
838748 TTATATTAATTAAA-ATTAAAATAATACA
1 TTATA-TAATTAAATACTAAAATAATACA
* * *
838776 TTATATATTTAAATACTAAAGTAATATA
1 TTATATAATTAAATACTAAAATAATACA
838804 TTAT
1 TTAT
838808 CAAAAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (28 bp):
TTATATAATTAAATACTAAAATAATACA
Found at i:838832 original size:13 final size:14
Alignment explanation
Indices: 838814--838851 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
838804 TTATCAAAAA
838814 ATAAAT-TTTTTAT
1 ATAAATATTTTTAT
838827 ATAAATAATTTTTAT
1 ATAAAT-ATTTTTAT
*
838842 TTAAATATTT
1 ATAAATATTT
838852 AGAATTTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 6 0.27
14 4 0.18
15 12 0.55
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATAAATATTTTTAT
Found at i:841467 original size:2 final size:2
Alignment explanation
Indices: 841462--841494 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
841452 AAATATCTGA
841462 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
841495 ATTTAATGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:842522 original size:79 final size:79
Alignment explanation
Indices: 842410--842586 Score: 212
Period size: 79 Copynumber: 2.2 Consensus size: 79
842400 CGAGTTAAAT
* * **
842410 ATATGCACCGTAGTGCTTACACATAAGGTCGTGCACACCATATGCATTGAAGTGC-TTACACATA
1 ATATGCACCGAAGTGCTTACACATAAGCTCGTGCACACCATATGCACCGAAGTGCATTACACATA
*
842474 AGGTCATGCCCACC
66 AGCTCATGCCCACC
* * * * * * *
842488 ATGTGTACCGAAGTGCATTACACATAAGCTCGTGCTCATCATTTGCACCGAAGTGCATTATATAT
1 ATATGCACCGAAGTGC-TTACACATAAGCTCGTGCACACCATATGCACCGAAGTGCATTACACAT
* *
842553 AAGCTCGTGCCCATC
65 AAGCTCATGCCCACC
842568 ATATGCACCGAAGTGCTTA
1 ATATGCACCGAAGTGCTTA
842587 ATCGATATGC
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
78 13 0.16
79 36 0.44
80 32 0.40
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (79 bp):
ATATGCACCGAAGTGCTTACACATAAGCTCGTGCACACCATATGCACCGAAGTGCATTACACATA
AGCTCATGCCCACC
Found at i:842538 original size:40 final size:39
Alignment explanation
Indices: 842410--842586 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 39
842400 CGAGTTAAAT
* * *
842410 ATATGCACCGTAGTGCTTACACATAAGGTCGTGCACACC
1 ATATGCACCGAAGTGCTTACACATAAGCTCGTGCCCACC
** * *
842449 ATATGCATTGAAGTGCTTACACATAAGGTCATGCCCACC
1 ATATGCACCGAAGTGCTTACACATAAGCTCGTGCCCACC
* * * *
842488 ATGTGTACCGAAGTGCATTACACATAAGCTCGTGCTCATC
1 ATATGCACCGAAGTGC-TTACACATAAGCTCGTGCCCACC
* * * *
842528 ATTTGCACCGAAGTGCATTATATATAAGCTCGTGCCCATC
1 ATATGCACCGAAGTGC-TTACACATAAGCTCGTGCCCACC
842568 ATATGCACCGAAGTGCTTA
1 ATATGCACCGAAGTGCTTA
842587 ATCGATATGC
Statistics
Matches: 118, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 49 0.42
40 69 0.58
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (39 bp):
ATATGCACCGAAGTGCTTACACATAAGCTCGTGCCCACC
Found at i:842777 original size:20 final size:21
Alignment explanation
Indices: 842738--842777 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
842728 AATATCATTT
*
842738 ATGATAAATATCATATATGTTC
1 ATGATAAACATCA-ATATGTTC
842760 ATGATAAACATC-ATATGT
1 ATGATAAACATCAATATGT
842778 AACGATCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (21 bp):
ATGATAAACATCAATATGTTC
Found at i:845362 original size:116 final size:115
Alignment explanation
Indices: 845221--845449 Score: 293
Period size: 116 Copynumber: 2.0 Consensus size: 115
845211 AGAGTAAACT
* * * * * *
845221 ATCCATTTATAGAATAAATATTCTTTTTGGAAAAATTACTACTTAGGTCCCTAAACA-TTTCTCA
1 ATCCATTAAAAGAATAAAAAATCTTTTTGGAAAAATTACAACTTAGGTCCCTAAA-ATTTTCCCA
* * *
845285 CTTT-TATATTTTATCCAAT-AAACTTTCAATATTTACATTTTGGTCACTAAAA
65 ATTTCTA-ATTTGA-CC-ATCAAACTTTCAAAATTTACATTTTGGTCACTAAAA
*
845337 ATCCATTAAAAGAATAAAAAATCTTTTTGGAAAAATTACAACTTAGGTCCTTAAAATTTTCCCAA
1 ATCCATTAAAAGAATAAAAAATCTTTTTGGAAAAATTACAACTTAGGTCCCTAAAATTTTCCCAA
* *
845402 TTTCTACTTTGACCATCAAACTTTTAAAATTTACATTTTGGTCACTAA
66 TTTCTAATTTGACCATCAAACTTTCAAAATTTACATTTTGGTCACTAA
845450 CATAAATTTT
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
114 2 0.02
115 32 0.33
116 62 0.63
117 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.40
Consensus pattern (115 bp):
ATCCATTAAAAGAATAAAAAATCTTTTTGGAAAAATTACAACTTAGGTCCCTAAAATTTTCCCAA
TTTCTAATTTGACCATCAAACTTTCAAAATTTACATTTTGGTCACTAAAA
Found at i:851638 original size:19 final size:18
Alignment explanation
Indices: 851602--851648 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
851592 TTAATATAAT
*
851602 TAGTATTAAATATAATTAA
1 TAGTATTAAAAATAATT-A
851621 TAGTATTAATAAAT-ATTA
1 TAGTATTAA-AAATAATTA
*
851639 TGGTATTAAA
1 TAGTATTAAA
851649 CTATGCTGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 1 0.04
18 9 0.36
19 12 0.48
20 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TAGTATTAAAAATAATTA
Found at i:854612 original size:12 final size:12
Alignment explanation
Indices: 854597--854629 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
854587 CTTGCTCTTT
854597 GGGCTGCTCCTC
1 GGGCTGCTCCTC
854609 GGGCTGCTCCTC
1 GGGCTGCTCCTC
854621 GGGCTGCTC
1 GGGCTGCTC
854630 AGGCTCATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.39, G:0.36, T:0.24
Consensus pattern (12 bp):
GGGCTGCTCCTC
Found at i:856332 original size:21 final size:23
Alignment explanation
Indices: 856284--856332 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
856274 ATTCCCCTGT
856284 GGGGGGAATAGGTTCCCCTTCAA
1 GGGGGGAATAGGTTCCCCTTCAA
* *
856307 AGGGGGAATCGGTT-CCC-TCAA
1 GGGGGGAATAGGTTCCCCTTCAA
856328 GGGGG
1 GGGGG
856333 ATGGATTCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 8 0.35
22 3 0.13
23 12 0.52
ACGTcount: A:0.20, C:0.20, G:0.41, T:0.18
Consensus pattern (23 bp):
GGGGGGAATAGGTTCCCCTTCAA
Found at i:863302 original size:45 final size:45
Alignment explanation
Indices: 863271--863770 Score: 415
Period size: 45 Copynumber: 11.2 Consensus size: 45
863261 TATTCATTAT
* * *
863271 TTTCATTTATGGCATCATTTTATGCCTTTAATGCA-TAGTTGTGCA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTA-TTATGCA
* *
863316 TTTCATTTATGGCATCATTTCATGCCTTTAATGTATTGTTATGCA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTATTATGCA
* * ***
863361 TTTCATTTATGGTATCATTTCATGCCTTTAATGCACCGTTATGCA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTATTATGCA
* * * **
863406 TTTCTTTTATGGCATCCTTTCATGCCTTTAATGCACCATTATGCA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTATTATGCA
* * ***
863451 TTTCATTTATGACATCCTTTCATGCCTTTAAT-ATACCGTTATGCA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGA-ATTATTATGCA
* ** * * **
863496 TTTTATTTATAACATCCTTTCATGCCTTTAATGCA-TAGTTACACA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTA-TTATGCA
* ***** *
863541 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCGCCGTTATACA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTATTATGCA
* * * **
863586 TTTGATTTATGGCATCCTTTCATGCCTTTAATGCATCGTTATGCA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTATTATGCA
* * **
863631 TTTCATTTATGACATCCTTTCATGCC--T--T--ACCATTATGCA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTATTATGCA
* * * * **
863670 TTTCATTTATGACATCCTTTTATGCCTTTAATGCATCGTTATGCA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTATTATGCA
* * * * **
863715 TTTCATTTATGACATCCTTTCATGCCTTTAAAGCATCGTTATGCA
1 TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTATTATGCA
863760 TTTCATTTATG
1 TTTCATTTATG
863771 TAATGAAAAC
Statistics
Matches: 401, Mismatches: 43, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.08
41 2 0.00
43 2 0.00
45 362 0.90
46 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.45
Consensus pattern (45 bp):
TTTCATTTATGGCATCATTTCATGCCTTTAATGAATTATTATGCA
Found at i:863365 original size:90 final size:90
Alignment explanation
Indices: 863271--863770 Score: 654
Period size: 90 Copynumber: 5.6 Consensus size: 90
863261 TATTCATTAT
* * * * * *
863271 TTTCATTTATGGCATCATTTTATGCCTTTAATGCATAGTTGTGCATTTCATTTATGGCATCATTT
1 TTTCATTTATGACATCCTTTCATGCCTTTAATGCACAGTTATGCATTTCATTTATGGCATCCTTT
* *
863336 CATGCCTTTAATGTATTGTTATGCA
66 CATGCCTTTAATGCATCGTTATGCA
** * * *
863361 TTTCATTTATGGTATCATTTCATGCCTTTAATGCACCGTTATGCATTTCTTTTATGGCATCCTTT
1 TTTCATTTATGACATCCTTTCATGCCTTTAATGCACAGTTATGCATTTCATTTATGGCATCCTTT
* *
863426 CATGCCTTTAATGCACCATTATGCA
66 CATGCCTTTAATGCATCGTTATGCA
** * * **
863451 TTTCATTTATGACATCCTTTCATGCCTTTAATATACCGTTATGCATTTTATTTATAACATCCTTT
1 TTTCATTTATGACATCCTTTCATGCCTTTAATGCACAGTTATGCATTTCATTTATGGCATCCTTT
* **
863516 CATGCCTTTAATGCATAGTTACACA
66 CATGCCTTTAATGCATCGTTATGCA
* * * * *
863541 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCGCCGTTATACATTTGATTTATGGCATCCTTT
1 TTTCATTTATGACATCCTTTCATGCCTTTAATGCACAGTTATGCATTTCATTTATGGCATCCTTT
863606 CATGCCTTTAATGCATCGTTATGCA
66 CATGCCTTTAATGCATCGTTATGCA
*
863631 TTTCATTTATGACATCCTTTCATGCC-TT-A--C-CA-TTATGCATTTCATTTATGACATCCTTT
1 TTTCATTTATGACATCCTTTCATGCCTTTAATGCACAGTTATGCATTTCATTTATGGCATCCTTT
*
863690 TATGCCTTTAATGCATCGTTATGCA
66 CATGCCTTTAATGCATCGTTATGCA
*
863715 TTTCATTTATGACATCCTTTCATGCCTTTAAAGCATC-GTTATGCATTTCATTTATG
1 TTTCATTTATGACATCCTTTCATGCCTTTAATGCA-CAGTTATGCATTTCATTTATG
863771 TAATGAAAAC
Statistics
Matches: 361, Mismatches: 42, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
84 74 0.20
85 3 0.01
86 2 0.01
88 2 0.01
89 2 0.01
90 278 0.77
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.45
Consensus pattern (90 bp):
TTTCATTTATGACATCCTTTCATGCCTTTAATGCACAGTTATGCATTTCATTTATGGCATCCTTT
CATGCCTTTAATGCATCGTTATGCA
Found at i:863418 original size:135 final size:135
Alignment explanation
Indices: 863271--863770 Score: 656
Period size: 135 Copynumber: 3.7 Consensus size: 135
863261 TATTCATTAT
* * * * * *
863271 TTTCATTTATGGCATCATTTTATGCCTTTAATGCATAGTTGTGCATTTCATTTATGGCATCATTT
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACAGTTATGCATTTCATTTATGACATCCTTT
* * ** *
863336 CATGCCTTTAATGTATTGTTATGCATTTCATTTATGGTATCATTTCATGCCTTTAATGCACCGTT
66 CATGCCTTTAATGCATCGTTATGCATTTCATTTATGACATCCTTTCATGCCTTTAATGCACCGTT
863401 ATGCA
131 ATGCA
*
863406 TTTCTTTTATGGCATCCTTTCATGCCTTTAATGCACCA-TTATGCATTTCATTTATGACATCCTT
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCA-CAGTTATGCATTTCATTTATGACATCCTT
** * * * **
863470 TCATGCCTTTAATATACCGTTATGCATTTTATTTATAACATCCTTTCATGCCTTTAATGCATAGT
65 TCATGCCTTTAATGCATCGTTATGCATTTCATTTATGACATCCTTTCATGCCTTTAATGCACCGT
**
863535 TACACA
130 TATGCA
* * * * *
863541 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCGCCGTTATACATTTGATTTATGGCATCCTTT
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACAGTTATGCATTTCATTTATGACATCCTTT
*
863606 CATGCCTTTAATGCATCGTTATGCATTTCATTTATGACATCCTTTCATGCC--T--T--ACCATT
66 CATGCCTTTAATGCATCGTTATGCATTTCATTTATGACATCCTTTCATGCCTTTAATGCACCGTT
863665 ATGCA
131 ATGCA
* *
863670 TTTCATTTATGACATCCTTTTATGCCTTTAATGCATC-GTTATGCATTTCATTTATGACATCCTT
1 TTTCATTTATGGCATCCTTTCATGCCTTTAATGCA-CAGTTATGCATTTCATTTATGACATCCTT
*
863734 TCATGCCTTTAAAGCATCGTTATGCATTTCATTTATG
65 TCATGCCTTTAATGCATCGTTATGCATTTCATTTATG
863771 TAATGAAAAC
Statistics
Matches: 320, Mismatches: 42, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
129 98 0.31
130 1 0.00
131 1 0.00
133 1 0.00
134 1 0.00
135 217 0.68
136 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.45
Consensus pattern (135 bp):
TTTCATTTATGGCATCCTTTCATGCCTTTAATGCACAGTTATGCATTTCATTTATGACATCCTTT
CATGCCTTTAATGCATCGTTATGCATTTCATTTATGACATCCTTTCATGCCTTTAATGCACCGTT
ATGCA
Found at i:863711 original size:84 final size:84
Alignment explanation
Indices: 863579--863742 Score: 292
Period size: 84 Copynumber: 2.0 Consensus size: 84
863569 TAATGCGCCG
* *
863579 TTATACATTTGATTTATGGCATCCTTTCATGCCTTTAATGCATCGTTATGCATTTCATTTATGAC
1 TTATACATTTCATTTATGACATCCTTTCATGCCTTTAATGCATCGTTATGCATTTCATTTATGAC
863644 ATCCTTTCATGCCTTACCA
66 ATCCTTTCATGCCTTACCA
* *
863663 TTATGCATTTCATTTATGACATCCTTTTATGCCTTTAATGCATCGTTATGCATTTCATTTATGAC
1 TTATACATTTCATTTATGACATCCTTTCATGCCTTTAATGCATCGTTATGCATTTCATTTATGAC
863728 ATCCTTTCATGCCTT
66 ATCCTTTCATGCCTT
863743 TAAAGCATCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (84 bp):
TTATACATTTCATTTATGACATCCTTTCATGCCTTTAATGCATCGTTATGCATTTCATTTATGAC
ATCCTTTCATGCCTTACCA
Found at i:863723 original size:24 final size:24
Alignment explanation
Indices: 863696--863768 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
863686 CTTTTATGCC
863696 TTTAATGCATCGTTATGCATTTCA
1 TTTAATGCATCGTTATGCATTTCA
* * *
863720 TTT-ATGACATCCTT-T-CA-TGCC
1 TTTAATG-CATCGTTATGCATTTCA
*
863741 TTTAAAGCATCGTTATGCATTTCA
1 TTTAATGCATCGTTATGCATTTCA
863765 TTTA
1 TTTA
863769 TGTAATGAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
21 11 0.30
22 5 0.14
23 6 0.16
24 15 0.41
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.45
Consensus pattern (24 bp):
TTTAATGCATCGTTATGCATTTCA
Found at i:864300 original size:95 final size:96
Alignment explanation
Indices: 864134--864334 Score: 237
Period size: 95 Copynumber: 2.1 Consensus size: 96
864124 CCCTACCATG
* *
864134 GTATCGATACTTCTATACTATGGTATCGATACACCCTTCTAGTATCGATACCATTTCTACATCCT
1 GTATCAATACTTCTATACTATGGTATCGATACACCCTTCTAGTATCGATACCATTTCGACATCCT
* *
864199 GTAATT-CATGGTATCGATACATTTCTCTTA
66 GGAATTCCATGGTATCGACACATTTCTCTTA
* * * * *
864229 GTATCAATACTTCTATATTATGGTA-CTGATACTCCCTT-TCAGTATTGATACCATTTCGACTTT
1 GTATCAATACTTCTATACTATGGTATC-GATACACCCTTCT-AGTATCGATACCATTTCGACATC
* * * *
864292 CTGGAATTCCCTGGTGTCGACACCTTTCTCTTG
64 CTGGAATTCCATGGTATCGACACATTTCTCTTA
*
864325 GTATCTATAC
1 GTATCAATAC
864335 CCACAGAAGT
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
94 2 0.02
95 59 0.66
96 28 0.31
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.40
Consensus pattern (96 bp):
GTATCAATACTTCTATACTATGGTATCGATACACCCTTCTAGTATCGATACCATTTCGACATCCT
GGAATTCCATGGTATCGACACATTTCTCTTA
Found at i:866252 original size:21 final size:21
Alignment explanation
Indices: 866234--866272 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
866224 AATAATACAT
866234 ACTTTTAATAT-TT-ATATAC
1 ACTTTTAATATGTTAATATAC
866253 ACTTTTAATATGTTAATATA
1 ACTTTTAATATGTTAATATA
866273 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.61
20 2 0.11
21 5 0.28
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (21 bp):
ACTTTTAATATGTTAATATAC
Found at i:866361 original size:6 final size:6
Alignment explanation
Indices: 866350--866399 Score: 64
Period size: 6 Copynumber: 7.7 Consensus size: 6
866340 AATATCATTT
866350 TTAATA TTAATA TTAATA TTAATA TATATATA TATATATA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA T-TA-ATA T-TA-ATA TTAATA TTAA
866400 AAATGATATT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 26 0.62
7 4 0.10
8 12 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:866439 original size:15 final size:14
Alignment explanation
Indices: 866414--866452 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
866404 GATATTGTCT
866414 AAATATATTAAATTCA
1 AAAT-TATTAAATT-A
866430 AAATTATTAAATTA
1 AAATTATTAAATTA
866444 AAATT-TTAA
1 AAATTATTAA
866453 GAATGTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.17
14 6 0.26
15 9 0.39
16 4 0.17
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTATTAAATTA
Found at i:867960 original size:65 final size:64
Alignment explanation
Indices: 867819--867975 Score: 199
Period size: 65 Copynumber: 2.4 Consensus size: 64
867809 TACACTGGGG
* ** * *
867819 TGTGAATCGGTGCAC-AAATATACTTCGATGTTTCAAAATAGCCAGGGTGCGTCGATGCATGTCT
1 TGTGCATCGGTGCACTAAATGCA-TTCGATGTTTCAAAATAGCCAGGGTGCATCGATGCATGGCT
* ***
867883 TGTGCATCGGTGCACTGAATGCATTCGATGTTTCAAAATATTTAGGGGTGCATCGATGCATGGCT
1 TGTGCATCGGTGCACTAAATGCATTCGATGTTTCAAAATAGCCA-GGGTGCATCGATGCATGGCT
*
867948 TGTGCATTGGTGCACTAAATGCATTCGA
1 TGTGCATCGGTGCACTAAATGCATTCGA
867976 AATTCAATTT
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
64 32 0.40
65 48 0.60
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (64 bp):
TGTGCATCGGTGCACTAAATGCATTCGATGTTTCAAAATAGCCAGGGTGCATCGATGCATGGCT
Found at i:868018 original size:65 final size:65
Alignment explanation
Indices: 867865--868021 Score: 163
Period size: 65 Copynumber: 2.4 Consensus size: 65
867855 AATAGCCAGG
* * * * ** * * *
867865 GTGCGTCGATGCATGTCTTGTGCATCGGTGCACTGAATGCATTCGATGTTTCAAAATATTTAGGG
1 GTGCATCGATGCATGACTAGTGCATCGGTGCACTAAATGCATTCGATAATTCAAAATAATTAAGA
* * * **
867930 GTGCATCGATGCATGGCTTGTGCATTGGTGCACTAAATGCATTCGA-AATTCAATTTAATTAAGA
1 GTGCATCGATGCATGACTAGTGCATCGGTGCACTAAATGCATTCGATAATTCAAAATAATTAAGA
*
867994 GTGCATTGATGCATGAACTAGTGCATCG
1 GTGCATCGATGCATG-ACTAGTGCATCG
868022 ATTCTTTCCT
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
64 25 0.33
65 51 0.67
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (65 bp):
GTGCATCGATGCATGACTAGTGCATCGGTGCACTAAATGCATTCGATAATTCAAAATAATTAAGA
Found at i:869111 original size:585 final size:587
Alignment explanation
Indices: 868318--869493 Score: 2115
Period size: 589 Copynumber: 2.0 Consensus size: 587
868308 GAGTAATTTT
*
868318 AAGATTTTCTATTAAAATAATTTTTGAAATCAATTTTGAAATTACTCCCCCTTACTATAATATAT
1 AAGATTTTCTATAAAAATAATTTTTGAAATCAATTTTGAAATTACTCCCCCTTACTATAATATAT
* *
868383 CTTCTACCCCTTTTTATTAAATCAAAAAGTCTATAAAATGGTTTTAAACAAGGTATTTGAAAAAC
66 CTTCTACCCCTTTTTATTAAATCAAAAAGACTATAAAACGGTTTTAAACAAGGTATTTGAAAAAC
* *
868448 ATAATCATTTGATACTTAGAATTTTAAAGTTCAAGCTGCTAAGATCAAATATCAAGAGAAAGGTT
131 ATAACCATTTGATACTTAGAATTTTAAAGTTCAAGCTACTAAGATCAAATATCAAGAGAAAGGTT
*
868513 AGCCTTTAGTTTCATAATTCAATATCCATAATGTGAAATGGCAAAATTGGTCATAATGCAACTAA
196 AGCCTTTAGTTTCATAATTCAATATCCATAATGTGAAATGGCAAAATTGGTCATAATACAACTAA
868578 TATGTAAATGATGCAAAAATAATAAACATTAAACTCAAATTGAAAATT-CCAAACCGAATATATA
261 TATGTAAATGATGCAAAAATAATAAACATTAAACTCAAATTGAAAATTACCAAACCGAATATATA
868642 ATAAGTTCAAACATTCAATCATCCAAAAACATAAATCCAAAAGCATCAAAAAGTTTTAACAATTA
326 ATAAGTTCAAACATTCAATCATCCAAAAACATAAATCCAAAAGCATCAAAAAGTTTTAACAATTA
* *
868707 AAGGCAAGGCAATCCAAAATATTAATCTAAAGTTTAATTTAGGCAAACTAAAGCAAGATAAGTCT
391 AAGGCAAGGCAATCCAAAATATTAATCCAAAGTTTAATTCAGGCAAACTAAAGCAAGATAAGTCT
* *
868772 AGTCGTCCATAGGAGGATCTGGAGGAGGAGGATAATGTGCTCGCACTTCAAGTGTGAGAGCATCC
456 AGTCGTCCATAGGAGGATCTGGAGGAGGAGGATAATGTGCTCGCACTTCAAGTGTAAGAGAATCC
868837 AAACGTTCACACATCTCCCGTTGAAACTCAGTCAGTTGAGACTCCATGGAAGCAAACCTTAGATC
521 AAACGTTCACACATCTCCCGTTGAAACTCAGTCAGTTGAGACTCCATGGAAGCAAACCTTAGATC
868902 AA
586 AA
868904 AAGATTTTCTATAAAAATAATTTTTGAAATCAATTTTGAAATTACT-CCCCTTACTATAATATAT
1 AAGATTTTCTATAAAAATAATTTTTGAAATCAATTTTGAAATTACTCCCCCTTACTATAATATAT
*
868968 CTTCT-CCCTCTTTTTATTAAATCAAAAAGACTCTAAAACGGTTTTAAACAAGGTATTTGAAAAA
66 CTTCTACCC-CTTTTTATTAAATCAAAAAGACTATAAAACGGTTTTAAACAAGGTATTTGAAAAA
* *
869032 CATAGCCATTTGATACTTAGAATTTTAAAGTTCAAGCTACTAAGATCCAATATCAAGAGAAAGGT
130 CATAACCATTTGATACTTAGAATTTTAAAGTTCAAGCTACTAAGATCAAATATCAAGAGAAAGGT
* *
869097 TAGCCTTTAGTTTCATAATTCAATATCCATAATTTGAAATTGCAAAATTGGTCATAATACAACTA
195 TAGCCTTTAGTTTCATAATTCAATATCCATAATGTGAAATGGCAAAATTGGTCATAATACAACTA
*
869162 ATATGTAAATGATGCAAAAATAATAAACATTAAGCTCAAATTGAAAATTCAAACCAAACCGAATA
260 ATATGTAAATGATGCAAAAATAATAAACATTAAACTCAAATTGAAAATT---ACCAAACCGAATA
869227 TATAATAAGTTCAAACATTCAATCATCCAAAAACATAAATCCAAAAGCATCAAAAAGTTTTAACA
322 TATAATAAGTTCAAACATTCAATCATCCAAAAACATAAATCCAAAAGCATCAAAAAGTTTTAACA
869292 ATTAAAGGCAAGGCAATCCAAAATATTAATCCAAAGTTTAATTCAGGCAAACTAAAGCAAGATAA
387 ATTAAAGGCAAGGCAATCCAAAATATTAATCCAAAGTTTAATTCAGGCAAACTAAAGCAAGATAA
* *
869357 GTCTAGTCGTCCATAGGAGGATCTGGAGGAGGAGGATAATGTGCTCGCACTTCAATTGTAAGGGA
452 GTCTAGTCGTCCATAGGAGGATCTGGAGGAGGAGGATAATGTGCTCGCACTTCAAGTGTAAGAGA
* *
869422 ATCCATACGTTCACCCATCTCCCGTTGAAACTCAGTCAGTTGAGACTCCATGGAAGCAAACCTTA
517 ATCCAAACGTTCACACATCTCCCGTTGAAACTCAGTCAGTTGAGACTCCATGGAAGCAAACCTTA
869487 GATCAA
582 GATCAA
869493 A
1 A
869494 TGACTCCATA
Statistics
Matches: 565, Mismatches: 20, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
584 3 0.01
585 246 0.44
586 45 0.08
589 271 0.48
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (587 bp):
AAGATTTTCTATAAAAATAATTTTTGAAATCAATTTTGAAATTACTCCCCCTTACTATAATATAT
CTTCTACCCCTTTTTATTAAATCAAAAAGACTATAAAACGGTTTTAAACAAGGTATTTGAAAAAC
ATAACCATTTGATACTTAGAATTTTAAAGTTCAAGCTACTAAGATCAAATATCAAGAGAAAGGTT
AGCCTTTAGTTTCATAATTCAATATCCATAATGTGAAATGGCAAAATTGGTCATAATACAACTAA
TATGTAAATGATGCAAAAATAATAAACATTAAACTCAAATTGAAAATTACCAAACCGAATATATA
ATAAGTTCAAACATTCAATCATCCAAAAACATAAATCCAAAAGCATCAAAAAGTTTTAACAATTA
AAGGCAAGGCAATCCAAAATATTAATCCAAAGTTTAATTCAGGCAAACTAAAGCAAGATAAGTCT
AGTCGTCCATAGGAGGATCTGGAGGAGGAGGATAATGTGCTCGCACTTCAAGTGTAAGAGAATCC
AAACGTTCACACATCTCCCGTTGAAACTCAGTCAGTTGAGACTCCATGGAAGCAAACCTTAGATC
AA
Found at i:874023 original size:22 final size:21
Alignment explanation
Indices: 873981--874020 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
873971 AAGACTATTT
873981 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTGAAATA
874002 TCATTTTT-ATATTTTGAAA
1 TCATTTTTCA-ATTTTGAAA
874021 ATAAAGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTGAAATA
Found at i:876021 original size:20 final size:20
Alignment explanation
Indices: 875996--876034 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
875986 AGGGTGCATC
875996 GATTAAAAACACAATTTTAA
1 GATTAAAAACACAATTTTAA
876016 GATTAAAAACACAATTTTA
1 GATTAAAAACACAATTTTA
876035 CACTTTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (20 bp):
GATTAAAAACACAATTTTAA
Found at i:877494 original size:45 final size:45
Alignment explanation
Indices: 877443--877533 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
877433 AAGCATAAAG
*
877443 AAAAAGAGATACCCTATGG-GAGTTCCATAGGGTCCATAAGGTATT
1 AAAAAGAGATACCCTATGGCG-GTTCCATAAGGTCCATAAGGTATT
*
877488 AAAAAGAGATACCCTATGGCGGTTCCATAAGGTTCATAAGGTATT
1 AAAAAGAGATACCCTATGGCGGTTCCATAAGGTCCATAAGGTATT
877533 A
1 A
877534 CCACTAGGCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 42 0.98
46 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.25
Consensus pattern (45 bp):
AAAAAGAGATACCCTATGGCGGTTCCATAAGGTCCATAAGGTATT
Found at i:879822 original size:13 final size:13
Alignment explanation
Indices: 879804--879856 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
879794 GTCATAAATC
879804 TATGACTCGCATT
1 TATGACTCGCATT
* *
879817 TATGACACGTATT
1 TATGACTCGCATT
*
879830 TATGA-TGCACATT
1 TATGACT-CGCATT
*
879843 TATGACGCGCATT
1 TATGACTCGCATT
879856 T
1 T
879857 CGCGTCATTG
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (13 bp):
TATGACTCGCATT
Found at i:879940 original size:13 final size:13
Alignment explanation
Indices: 879924--879953 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
879914 TTATGACACG
*
879924 CATTTATGACTTA
1 CATTTACGACTTA
879937 CATTTACGACTTA
1 CATTTACGACTTA
879950 CATT
1 CATT
879954 GCGTGTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (13 bp):
CATTTACGACTTA
Found at i:879987 original size:98 final size:98
Alignment explanation
Indices: 879814--879997 Score: 228
Period size: 98 Copynumber: 1.9 Consensus size: 98
879804 TATGACTCGC
* * * * * * *
879814 ATTTATGACACGTATTTATGATGCACATTTATGACGCGCATTTCGCGTCATTGAAGCCCCCGTCA
1 ATTTATGACACGCATTTATGATGCACATTTACGACGCACATTGCGCGTCATTGAAGCACACATCA
*
879879 TAAATGAAGATGACACACATTTGTATGTCATAA
66 TAAATAAAGATGACACACATTTGTATGTCATAA
* ** *
879912 ATTTATGACACGCATTTATGACT-TACATTTACGACTTACATTGCGTGTCATTGAAGCACACATC
1 ATTTATGACACGCATTTATGA-TGCACATTTACGACGCACATTGCGCGTCATTGAAGCACACATC
879976 ATTAAA-AAAGATGACACACATT
65 A-TAAATAAAGATGACACACATT
879998 CATGTGTCGT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
98 67 0.93
99 5 0.07
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (98 bp):
ATTTATGACACGCATTTATGATGCACATTTACGACGCACATTGCGCGTCATTGAAGCACACATCA
TAAATAAAGATGACACACATTTGTATGTCATAA
Found at i:880134 original size:2 final size:2
Alignment explanation
Indices: 880025--880122 Score: 187
Period size: 2 Copynumber: 48.5 Consensus size: 2
880015 TATCGCAAAT
880025 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
880067 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
880109 TCA TA TA TA TA TA T
1 T-A TA TA TA TA TA T
880123 CAAAATATAT
Statistics
Matches: 95, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 93 0.98
3 2 0.02
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:880157 original size:27 final size:25
Alignment explanation
Indices: 880020--880136 Score: 94
Period size: 22 Copynumber: 5.1 Consensus size: 25
880010 TTGTATATCG
*
880020 CAAATTATATAT-ATATATATATAT
1 CAAAATATATATCATATATATATAT
*
880044 --ATATATATAT-ATATATATATAT
1 CAAAATATATATCATATATATATAT
*
880066 --ATATATATAT-ATATATATATAT
1 CAAAATATATATCATATATATATAT
*
880088 --ATATATATAT-ATATATATATAT
1 CAAAATATATATCATATATATATAT
* *
880110 CATATATATATATCA-AAATATATAT
1 CA-AAATATATATCATATATATATAT
880135 CA
1 CA
880137 TATGTTATCA
Statistics
Matches: 86, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
22 64 0.74
25 21 0.24
26 1 0.01
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.46
Consensus pattern (25 bp):
CAAAATATATATCATATATATATAT
Found at i:881702 original size:26 final size:26
Alignment explanation
Indices: 881628--881703 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 26
881618 TTCCTTTGCG
*
881628 GTGTCCCTTCTCTTTTCCCCTCTTCA
1 GTGTCCCTTCTCTTTTCTCCTCTTCA
* * * *
881654 -TTTTCTTTCT-TTTTTTCCGTCTTCA
1 GTGTCCCTTCTCTTTTCTCC-TCTTCA
*
881679 GTGTCCCTTCTCCTTTCTCCTCTTC
1 GTGTCCCTTCTCTTTTCTCCTCTTC
881704 CTTTTCAACA
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
24 6 0.16
25 13 0.35
26 12 0.32
27 6 0.16
ACGTcount: A:0.03, C:0.37, G:0.07, T:0.54
Consensus pattern (26 bp):
GTGTCCCTTCTCTTTTCTCCTCTTCA
Found at i:887842 original size:16 final size:16
Alignment explanation
Indices: 887823--887855 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
887813 AATTTGACTT
887823 TTCTGGTCAAAGTCAA
1 TTCTGGTCAAAGTCAA
*
887839 TTCTGGTTAAAGTCAA
1 TTCTGGTCAAAGTCAA
887855 T
1 T
887856 GGGTCGGGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36
Consensus pattern (16 bp):
TTCTGGTCAAAGTCAA
Found at i:888517 original size:2 final size:2
Alignment explanation
Indices: 888510--888539 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
888500 TTAAACAAAA
888510 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
888540 TATTTAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:891208 original size:31 final size:30
Alignment explanation
Indices: 891173--891252 Score: 79
Period size: 32 Copynumber: 2.5 Consensus size: 30
891163 GGAGTACCTT
* * *
891173 GGGGCCTAAGAGCCTATCCAAGACAATTCTC
1 GGGGCC-AAGAGCCTACCCAAGAAAACTCTC
*
891204 GGGGCCATAGAGGCTTACCCAAGAAAACTCTC
1 GGGGCCA-AGA-GCCTACCCAAGAAAACTCTC
*
891236 GGGGCCGCAGAGCCTAC
1 GGGGCC-AAGAGCCTAC
891253 TCAATTGTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
30 1 0.03
31 14 0.35
32 25 0.62
ACGTcount: A:0.28, C:0.30, G:0.28, T:0.15
Consensus pattern (30 bp):
GGGGCCAAGAGCCTACCCAAGAAAACTCTC
Found at i:892203 original size:31 final size:31
Alignment explanation
Indices: 892165--892230 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
892155 TGTTACTTCG
*
892165 GGGACCATATTACAAACGGACTAAATGTTGA
1 GGGACCATATTACAAACAGACTAAATGTTGA
* *
892196 GGGACCATATTATAAACAGACTAAATGTTGG
1 GGGACCATATTACAAACAGACTAAATGTTGA
892227 GGGA
1 GGGA
892231 TTATATCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.23
Consensus pattern (31 bp):
GGGACCATATTACAAACAGACTAAATGTTGA
Found at i:893154 original size:31 final size:31
Alignment explanation
Indices: 893117--893187 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
893107 AACTTTGAAA
*
893117 ATTATAAAATAGTAATTATATTAATTAAATT
1 ATTATAAAATAGTAATTATATTAATCAAATT
* *
893148 ATTATAAAATAGTTATTATATTTATCAAATT
1 ATTATAAAATAGTAATTATATTAATCAAATT
*
893179 AATATAAAA
1 ATTATAAAA
893188 AATCCATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (31 bp):
ATTATAAAATAGTAATTATATTAATCAAATT
Found at i:893352 original size:31 final size:31
Alignment explanation
Indices: 893317--893386 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
893307 CTTTTAAAAC
*
893317 TTGCAATACAATCTCCT-AACATTTAGTCTGT
1 TTGCAATACAATC-CCTCAACATTTAGTCCGT
***
893348 TTGCAATATGGTCCCTCAACATTTAGTCCGT
1 TTGCAATACAATCCCTCAACATTTAGTCCGT
893379 TTGCAATA
1 TTGCAATA
893387 TGGTCCCCGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 3 0.09
31 31 0.91
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (31 bp):
TTGCAATACAATCCCTCAACATTTAGTCCGT
Found at i:893387 original size:31 final size:31
Alignment explanation
Indices: 893334--893393 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
893324 ACAATCTCCT
*
893334 AACATTTAGTCTGTTTGCAATATGGTCCCTC
1 AACATTTAGTCCGTTTGCAATATGGTCCCTC
893365 AACATTTAGTCCGTTTGCAATATGGTCCC
1 AACATTTAGTCCGTTTGCAATATGGTCCC
893394 CGACGTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (31 bp):
AACATTTAGTCCGTTTGCAATATGGTCCCTC
Found at i:894959 original size:130 final size:130
Alignment explanation
Indices: 894818--895065 Score: 424
Period size: 130 Copynumber: 1.9 Consensus size: 130
894808 TATTTATATA
*
894818 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* * *
894883 TTAGCACATGATCATGACACGTGTCATTGGTGACACGTGTTACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
894948 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
* * * *
895013 TTAACACATGATCATGATATGTGTTATTGGTGACACATGTCACCTCCTAATTA
66 TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTA
895066 GAAGAAAATT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 110 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (130 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTG
TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:895096 original size:130 final size:129
Alignment explanation
Indices: 894832--895096 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 129
894822 ATTTGGTCCT
* *
894832 AAATTAAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTGTTAGCACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* * *** * * **** *
894897 TGACACGTGTCATTGGTGACACGTGTTACCACCTAATTATTTATATATGCTATCAATTTGGTCCT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
894962 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* * * * *
895027 TGATATGTGTTATTGGTGACACATGTCACCTCCTAATTAGAAGAAAATTAAGTTA-CAAAGAAGT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAAGAAGT
895091 -A
128 CA
895092 AAATT
1 AAATT
895097 TGGGTCTTGG
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
130 100 0.88
132 8 0.07
133 5 0.04
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (129 bp):
AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:895424 original size:28 final size:27
Alignment explanation
Indices: 895393--895455 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
895383 AGTTGATACA
*
895393 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
895421 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
895449 ATATTTT
1 ATATTTT
895456 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 21 0.72
29 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:895556 original size:16 final size:18
Alignment explanation
Indices: 895535--895568 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
895525 ATTTCTTATT
895535 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
895551 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
895569 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:895625 original size:30 final size:30
Alignment explanation
Indices: 895568--895625 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
895558 TAAATGATTC
* **
895568 ATACATTAATATATGAATATATTTTTATTT
1 ATACATTAATATATAAATATACATTTATTT
895598 ATACATCTAA-ATATAAATATACATTTAT
1 ATACAT-TAATATATAAATATACATTTAT
895626 ATAAATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.47
Consensus pattern (30 bp):
ATACATTAATATATAAATATACATTTATTT
Found at i:895714 original size:21 final size:21
Alignment explanation
Indices: 895690--895732 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
895680 TATTACCTTA
895690 AATTGAAGTATTTTAGAATTT
1 AATTGAAGTATTTTAGAATTT
895711 AATTGAAGTATTTTAGAATTT
1 AATTGAAGTATTTTAGAATTT
895732 A
1 A
895733 GGGTTTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.47
Consensus pattern (21 bp):
AATTGAAGTATTTTAGAATTT
Found at i:895750 original size:35 final size:35
Alignment explanation
Indices: 895701--895786 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 35
895691 ATTGAAGTAT
** * *
895701 TTTAGAATTTAATTGAAGTATTTTAGAATTTAGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
* * *
895736 TTTAGAATAAAATTGAATTACTTTGGAAATTGGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
*
895771 TTTAGAATGAAATTGA
1 TTTAGAATAAAATTGA
895787 TGACTGTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.37, C:0.01, G:0.21, T:0.41
Consensus pattern (35 bp):
TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
Found at i:896017 original size:3 final size:3
Alignment explanation
Indices: 896009--896059 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
895999 TACTTTACCC
* * * *
896009 TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA CTA ATA TTA TTG TTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
896055 TTA TT
1 TTA TT
896060 TTCAGGTTAG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
3 38 0.95
4 2 0.05
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:897571 original size:2 final size:2
Alignment explanation
Indices: 897564--897590 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
897554 ATCATGTTTG
897564 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
897591 GCACGTTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:897692 original size:2 final size:2
Alignment explanation
Indices: 897642--897680 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
897632 ATATACGATT
897642 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
897681 TAAAGGTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:902794 original size:25 final size:24
Alignment explanation
Indices: 902755--902815 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
902745 AGGACAATAT
902755 TTTTTCAAAA-TTTTT-ATTAAAC
1 TTTTTCAAAATTTTTTGATTAAAC
* *
902777 ATTTTTCAAAATTCTTTTGATTGATC
1 -TTTTTCAAAATT-TTTTGATTAAAC
902803 TTTTTCAAAATTT
1 TTTTTCAAAATTT
902816 GAAAATAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 10 0.30
24 2 0.06
25 16 0.48
26 5 0.15
ACGTcount: A:0.31, C:0.10, G:0.03, T:0.56
Consensus pattern (24 bp):
TTTTTCAAAATTTTTTGATTAAAC
Found at i:903589 original size:17 final size:17
Alignment explanation
Indices: 903567--903602 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
903557 TGGGGCAATC
903567 AGTATAGATGACAAAGA
1 AGTATAGATGACAAAGA
903584 AGTATAGATGACAAAGA
1 AGTATAGATGACAAAGA
903601 AG
1 AG
903603 ATAAAATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.25, T:0.17
Consensus pattern (17 bp):
AGTATAGATGACAAAGA
Found at i:905097 original size:29 final size:30
Alignment explanation
Indices: 905028--905097 Score: 72
Period size: 29 Copynumber: 2.3 Consensus size: 30
905018 TTAACGATTA
* *
905028 AATGGTATAATTGAAAGGAAAATCAAAATTT
1 AATGGTATAATT-AAAGCAAAATCAAAATTC
* *
905059 AATGCTATAATT-AA-CAAAATTAAAAGTTC
1 AATGGTATAATTAAAGCAAAATCAAAA-TTC
905088 AATGGTATAA
1 AATGGTATAA
905098 ATGATAAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
28 9 0.27
29 13 0.39
31 11 0.33
ACGTcount: A:0.51, C:0.06, G:0.13, T:0.30
Consensus pattern (30 bp):
AATGGTATAATTAAAGCAAAATCAAAATTC
Found at i:910907 original size:23 final size:23
Alignment explanation
Indices: 910881--910935 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
910871 AAATTATATT
910881 TATTGATA-ATTTTAATAATATAA
1 TATT-ATATATTTTAATAATATAA
* *
910904 TATTATATTTTTTAATATTATAA
1 TATTATATATTTTAATAATATAA
*
910927 TAATATATA
1 TATTATATA
910936 AAATTACACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 3 0.11
23 24 0.89
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TATTATATATTTTAATAATATAA
Found at i:911736 original size:19 final size:20
Alignment explanation
Indices: 911704--911743 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
911694 ACTCTACTTT
911704 TTAATAAAAAT-AAAAATTA
1 TTAATAAAAATAAAAAATTA
* *
911723 TTAATTAAATTAAAAAATTA
1 TTAATAAAAATAAAAAATTA
911743 T
1 T
911744 CAGTTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAATAAAAATAAAAAATTA
Found at i:912075 original size:221 final size:219
Alignment explanation
Indices: 911552--912223 Score: 716
Period size: 221 Copynumber: 3.0 Consensus size: 219
911542 GATAAATATT
* * * * * * *
911552 TTATATATTTTAAATATTAGTTTATACAAGATTAAAAGAGAGACTAAATTTATG-TTT-TGCACA
1 TTATACATGTTAAACATTAGTTTATACAAAATTAAAAGAAAAACTAAATTTAAGATTTATG--CA
* * * *
911615 TAATTAAAAATCGATTTCTAATTACACATTTTAACTATGTAATAAAAT-AAAAATTAATTTAAAT
64 TGATT-AAAATCGACTTCTAATTAAACATTTTAACTATGTAATACAATAAAAAATTAA-TTAAAT
* * * * * *
911679 AGAAATGATTTGTAAACTCTACTTTTTAATAAAAAT-AAAAATTATTAATTAAATTAAAAAATTA
127 ATAAATGATTTGTATATTTTA-TTTTT-A-AAAAATGTAAAATTATTAATTAAATT-AAAAAGTA
* *
911743 TCAGTTTTTAAGACTATATCTGTAATCATTAAA
188 TCAATTTTT-AGACTATATCTATAATCATTAAA
* * * * **
911776 TTATAAATGTTAAACATTAATTTATACAAAATT--GA-AAAAACTAAATATAAGATTTACACATG
1 TTATACATGTTAAACATTAGTTTATACAAAATTAAAAGAAAAACTAAATTTAAGATTTATGCATG
*
911838 ATTAAAATCGACTTCTAATTAAACATTTTAACTATGTAATTCAATAAAAAATTAATTAATATATA
66 ATTAAAATCGACTTCTAATTAAACATTTTAACTATGTAATACAATAAAAAATTAATTAA-ATATA
* *
911903 AATTATTTGTATATTTTATTTGTTAAAAAATGTAAAATTATTAATTAAATTAAAAAGTATTAATT
130 AATGATTTGTATATTTTATTT-TTAAAAAATGTAAAATTATTAATTAAATTAAAAAGTATCAATT
911968 TTTAGACTATATCTATAATCATTAAA
194 TTTAGACTATATCTATAATCATTAAA
* *
911994 TTATACATGTTAAACATTAGCTTATAAAAAATTAAAAGAAAAACTAAATTTAAGATTTATGCATG
1 TTATACATGTTAAACATTAGTTTATACAAAATTAAAAGAAAAACTAAATTTAAGATTTATGCATG
* * * * * * * * *
912059 ATTAAAATTGACTTCTACTTATACATTTTAATTATGAAATCCAATATATATTTAATTAAAATATA
66 ATTAAAATCGACTTCTAATTAAACATTTTAACTATGTAATACAATAAAAAATTAATT-AAATATA
* * *
912124 AATGATTCT-TATATTTTATTTTTTAATAAAAAGTAAAATTATTAGTTAAAAT-AAAAGTATCAA
130 AATGATT-TGTATATTTTA-TTTTTAA-AAAATGTAAAATTATTAATTAAATTAAAAAGTATCAA
* * * * *
912187 -TTCTATATTATATTTATAACCATTAAA
192 TTTTTAGACTATATCTATAATCATTAAA
912214 TTATACATGT
1 TTATACATGT
912224 GAAAAAAAGA
Statistics
Matches: 381, Mismatches: 54, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
218 51 0.13
219 20 0.05
220 97 0.25
221 153 0.40
222 32 0.08
224 28 0.07
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (219 bp):
TTATACATGTTAAACATTAGTTTATACAAAATTAAAAGAAAAACTAAATTTAAGATTTATGCATG
ATTAAAATCGACTTCTAATTAAACATTTTAACTATGTAATACAATAAAAAATTAATTAAATATAA
ATGATTTGTATATTTTATTTTTAAAAAATGTAAAATTATTAATTAAATTAAAAAGTATCAATTTT
TAGACTATATCTATAATCATTAAA
Found at i:913765 original size:20 final size:20
Alignment explanation
Indices: 913742--913788 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
913732 AATAATCCCC
913742 AACGGCTCCAAAACATCCAT
1 AACGGCTCCAAAACATCCAT
* *
913762 AACGGCTTCGAAACATCCAT
1 AACGGCTCCAAAACATCCAT
913782 AACGGCT
1 AACGGCT
913789 AAAAATGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.15, T:0.17
Consensus pattern (20 bp):
AACGGCTCCAAAACATCCAT
Found at i:917192 original size:17 final size:17
Alignment explanation
Indices: 917170--917211 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
917160 GTACCTGTCA
917170 TGATCTTCGGATCATCC
1 TGATCTTCGGATCATCC
917187 TGATCTTCGGATCATCC
1 TGATCTTCGGATCATCC
917204 TGATCTTC
1 TGATCTTC
917212 AGTGGTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.38
Consensus pattern (17 bp):
TGATCTTCGGATCATCC
Found at i:919257 original size:54 final size:53
Alignment explanation
Indices: 919123--919566 Score: 525
Period size: 54 Copynumber: 8.3 Consensus size: 53
919113 ATTCTGTGGG
* * *
919123 TTGCACACATAGTGTCGAAACGGTTATTCATCAACATATGAT-AAATTT-TAT
1 TTGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTTTGTAT
* *
919174 GTTGCACACTTAGTGACGAAACGGTTATTCATCAACATATGATGAATTTTATACT
1 -TTGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTTTGTA-T
** * ** *
919229 TTGCACACTTAGTGCCGAAACAATTATTCATTAACATATGATGAATTACGTGCT
1 TTGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTTTGT-AT
* * *
919283 TTGCACACTTAGTGTCGAAATGATTATTCATCAACATATGATGAATTTTGTACT
1 TTGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTTTGTA-T
* *
919337 TTGCACACTTATTGCCGAAACGGTTATTCATCAACATATGATGAATTCTGTGAAT
1 TTGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATT-T-TGTAT
* * *
919392 TT-CACACTTAGTACCGAAACGGTTATTCATCAACATATGATGAATTTCGTTAA
1 TTGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTTTG-TAT
* * * ** *
919445 TTACACACTTAGTGTCAAAACGGTTATTCATCAACATATGATGAATTCCGTGAA
1 TTGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTTTGT-AT
* * * *
919499 TTGCACACTTAGTGCCTAAACGGTTATTCATTAACATATGATGAATTTCGTGAA
1 TTGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTTTGT-AT
919553 TTGCACACTTAGTG
1 TTGCACACTTAGTG
919567 TCTATTTGGT
Statistics
Matches: 345, Mismatches: 37, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
52 41 0.12
53 10 0.03
54 286 0.83
55 5 0.01
56 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (53 bp):
TTGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTTTGTAT
Found at i:919400 original size:162 final size:160
Alignment explanation
Indices: 919123--919566 Score: 590
Period size: 162 Copynumber: 2.8 Consensus size: 160
919113 ATTCTGTGGG
* *
919123 TTGCACACATAGTGTCGAAACGGTTATTCATCAACATATGAT-AAATTT-TATGTTGCACACTTA
1 TTGCACACTTAGTGTCGAAACGGTTATTCATCAACATATGATGAATTTTGTAT-TTGCACACTTA
*
919186 GTGACGAAACGGTTATTCATCAACATATGATGAATTT-T-ATACTTTGCACACTTAGTGCCGAAA
65 GTGCCGAAACGGTTATTCATCAACATATGATGAATTTGTGA-A-TTT-CACACTTAGTGCCGAAA
* **
919249 CAATTATTCATTAACATATGATGAATTACGTGCT
127 CAATTATTCATCAACATATGATGAATTACGTGAA
* *
919283 TTGCACACTTAGTGTCGAAATGATTATTCATCAACATATGATGAATTTTGTACTTTGCACACTTA
1 TTGCACACTTAGTGTCGAAACGGTTATTCATCAACATATGATGAATTTTGTA-TTTGCACACTTA
* * *
919348 TTGCCGAAACGGTTATTCATCAACATATGATGAATTCTGTGAATTTCACACTTAGTACCGAAACG
65 GTGCCGAAACGGTTATTCATCAACATATGATGAATT-TGTGAATTTCACACTTAGTGCCGAAACA
* * *
919413 GTTATTCATCAACATATGATGAATTTCGTTAA
129 ATTATTCATCAACATATGATGAATTACGTGAA
* * ** *
919445 TTACACACTTAGTGTCAAAACGGTTATTCATCAACATATGATGAATTCCGTGAATTGCACACTTA
1 TTGCACACTTAGTGTCGAAACGGTTATTCATCAACATATGATGAATTTTGT-ATTTGCACACTTA
* * *
919510 GTGCCTAAACGGTTATTCATTAACATATGATGAATTTCGTGAATTGCACACTTAGTG
65 GTGCCGAAACGGTTATTCATCAACATATGATGAATTT-GTGAATTTCACACTTAGTG
919567 TCTATTTGGT
Statistics
Matches: 250, Mismatches: 26, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
160 39 0.16
161 6 0.02
162 196 0.78
163 6 0.02
164 2 0.01
165 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (160 bp):
TTGCACACTTAGTGTCGAAACGGTTATTCATCAACATATGATGAATTTTGTATTTGCACACTTAG
TGCCGAAACGGTTATTCATCAACATATGATGAATTTGTGAATTTCACACTTAGTGCCGAAACAAT
TATTCATCAACATATGATGAATTACGTGAA
Found at i:920854 original size:5 final size:5
Alignment explanation
Indices: 920855--920943 Score: 178
Period size: 5 Copynumber: 17.8 Consensus size: 5
920845 ATATTATATT
920855 ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC
1 ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC
920905 ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTA
1 ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATTA
920944 TAAAAAAAAT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 84 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTAC
Found at i:920857 original size:13 final size:13
Alignment explanation
Indices: 920833--920944 Score: 107
Period size: 15 Copynumber: 7.8 Consensus size: 13
920823 ATATTTGAGG
*
920833 CATTACAATATTA
1 CATTACATTATTA
* *
920846 TATTATATTATTA
1 CATTACATTATTA
920859 CATTACATTACATTA
1 CATTACATT--ATTA
920874 CATTACATTACATTA
1 CATTACATT--ATTA
920889 CATTACATTACATTA
1 CATTACATT--ATTA
920904 CATTACATTACATTA
1 CATTACATT--ATTA
920919 CATTACATTACATTA
1 CATTACATT--ATTA
920934 CATTACATTAT
1 CATTACATTAT
920945 AAAAAAAATA
Statistics
Matches: 92, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
13 19 0.21
15 73 0.79
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (13 bp):
CATTACATTATTA
Found at i:921155 original size:2 final size:2
Alignment explanation
Indices: 921144--921186 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
921134 ATATTCAAAT
921144 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
921185 TA
1 TA
921187 GTTAATGATG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:923974 original size:2 final size:2
Alignment explanation
Indices: 923961--923995 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
923951 TACTTCGTCA
*
923961 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
923996 ATTATTTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:925573 original size:5 final size:5
Alignment explanation
Indices: 925563--925588 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
925553 ATCCGTATTT
925563 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
925589 CTTACAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:926428 original size:22 final size:23
Alignment explanation
Indices: 926396--926438 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
926386 ACCGGTTAAA
* *
926396 ATTTAGACCGGATATGTTATATT
1 ATTTAGACCGGAAATATTATATT
926419 ATTTA-ACCGGAAATATTATA
1 ATTTAGACCGGAAATATTATA
926439 AAGCACAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (23 bp):
ATTTAGACCGGAAATATTATATT
Found at i:926992 original size:23 final size:23
Alignment explanation
Indices: 926966--927038 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
926956 ATATTTTACA
926966 ATATAAGCACTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
*
926989 ATATAA-AAGCTACCTATTACATT
1 ATATAAGCA-CTACCTATTACATT
* ** *
927012 GTATAAGCGTTACCTATTACATC
1 ATATAAGCACTACCTATTACATT
927035 ATAT
1 ATAT
927039 TTTTACCTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
22 1 0.02
23 40 0.98
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (23 bp):
ATATAAGCACTACCTATTACATT
Found at i:927483 original size:490 final size:490
Alignment explanation
Indices: 926567--929821 Score: 5771
Period size: 490 Copynumber: 6.7 Consensus size: 490
926557 TTATAATATG
* *
926567 TTGAAAGTGTCTATACTTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATAC-TTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
926632 TTCAA--TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
926695 ACAAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAAT
130 AC-AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAAT
*
926760 ATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATGATAATAT
194 ATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATAT
* ** * *
926825 ATA----AACATAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCA
259 ATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCA
926886 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAAT
324 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAAT
* * *
926951 GATAGATATTTTACAATATAAGCACTACCTATTACATTATATAAAAGCTACCTATTACATTGTAT
389 GATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATAT
*
927016 AAGCGTTACCTATTACATCATATTTTTACCTATTATA
454 AAGCGCTACCTATTACATCATATTTTTACCTATTATA
* *
927053 TTGAAAGTGTTCATACTTTTTATAAAAAGAATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
927118 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
927183 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
*
927248 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATGATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
* ** * *
927313 ACCGTAACATAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
* * *
927378 CAAAAGATAACCATAAATTAATATTTTCCATAGTGAAATAAGTATGGACACTTTTATAAAAATGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGA
*
927443 TAGATAATTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
*
927508 GTGCTACCTATTACATCATATTTTTACCTATTATA
456 GCGCTACCTATTACATCATATTTTTACCTATTATA
*
927543 TTGAAATTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
927608 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
*
927673 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAATAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
927738 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
927803 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
927868 CAAAAGATAACCTTAAATTAATGTTTTCTACAGTGAAATAAGTATGGACACTTTTATAAAAATGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGA
*
927933 TAGATATTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
927998 GCGCTACCTATTACATCATATTTTTACCTATTATA
456 GCGCTACCTATTACATCATATTTTTACCTATTATA
** *
928033 TTGAAAGTGTTTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
928098 TCAA-TTTTTTTAATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
*
928162 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGATTTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
928227 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
928292 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
928357 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGA
928422 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
928487 GCGCTACCTATTACATCATATTTTTACCTATTATA
456 GCGCTACCTATTACATCATATTTTTACCTATTATA
928522 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
* *
928586 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTTATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
* *
928651 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
928716 TAACCAAAG---ATAAT--A-A--T-A-A-ATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
* * * *
928770 ACCATAACGTAAAAAATAAATCAATAGACGCCTATAATTACTAAATTAATGTCTTAAAACTCAAT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
928835 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGA
928900 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
928965 GCGCTACCTATTACATCATATTTTTACCTATTATA
456 GCGCTACCTATTACATCATATTTTTACCTATTATA
*
929000 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAGTTATGTAATTTATATT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
929064 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
* *
929129 CAAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
131 C-AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
929194 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
*
929259 TACCGTAACGTAAAAAATAAATCATTAGACACCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
* * * * * *
929324 TCAAAAGATAACCCTAAATTAATATTTT-CATCCGTGAAAAAAGTATGGTCACTTTTATAAAAAG
325 TCAAAAGATAACCTTAAATTAATGTTTTCCA-CAGTGAAATAAGTATGGACACTTTTATAAAAAT
929388 GATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATAT
389 GATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATAT
*
929453 AAGCGCTACATATTACATCATATTTTTACCTATTATA
454 AAGCGCTACCTATTACATCATATTTTTACCTATTATA
929490 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
929554 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
* *
929619 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
*
929684 TAACCAAAGATAATAATAAATATTTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
929749 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
929814 CAAAAGAT
326 CAAAAGAT
929822 GTACATACCT
Statistics
Matches: 2678, Mismatches: 71, Indels: 37
0.96 0.03 0.01
Matches are distributed among these distances:
478 387 0.14
479 74 0.03
480 1 0.00
481 1 0.00
482 5 0.00
483 1 0.00
484 2 0.00
485 52 0.02
486 149 0.06
487 61 0.02
488 31 0.01
489 780 0.29
490 1134 0.42
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.41
Consensus pattern (490 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGA
TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
GCGCTACCTATTACATCATATTTTTACCTATTATA
Found at i:927491 original size:23 final size:23
Alignment explanation
Indices: 927456--927528 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
927446 ATAATTTACA
*
927456 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
927479 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
927502 ATATAAGTGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
927525 ATAT
1 ATAT
927529 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:927972 original size:23 final size:23
Alignment explanation
Indices: 927946--928018 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
927936 ATATTTTACA
*
927946 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
927969 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
927992 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
928015 ATAT
1 ATAT
928019 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:928470 original size:23 final size:23
Alignment explanation
Indices: 928435--928507 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
928425 ATACTTTACA
*
928435 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
928458 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
928481 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
928504 ATAT
1 ATAT
928508 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:928948 original size:23 final size:23
Alignment explanation
Indices: 928913--928985 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
928903 ATACTTTACA
*
928913 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
928936 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
928959 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
928982 ATAT
1 ATAT
928986 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:929438 original size:23 final size:23
Alignment explanation
Indices: 929403--929475 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
929393 ATACTTTACA
*
929403 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
929426 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
929449 ATATAAGCGCTACATATTACATC
1 ATATAAGCGCTACCTATTACATT
929472 ATAT
1 ATAT
929476 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:929518 original size:968 final size:976
Alignment explanation
Indices: 926567--929821 Score: 5731
Period size: 968 Copynumber: 3.3 Consensus size: 976
926557 TTATAATATG
* *
926567 TTGAAAGTGTCTATACTTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATAC-TTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
*
926632 TTCAA--TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
926695 ACAAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAAT
130 AC-AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAAT
*
926760 ATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATGATAATAT
194 ATTAACCAAAG--AATAAT-AATAT-TAATATATATGTTTATTGTTTTTAATTTAATAATAATAT
* ** * *
926825 AT---A-AACATAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCA
255 ATACCATAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCA
926886 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAAT
320 CTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAAT
* *
926951 GATAGATATTTTACAATATAAGCACTACCTATTACATTATATAAAAGCTACCTATTACATTGTAT
385 GATAGATATTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATAT
*
927016 AAGCGTTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTTCATACTTTTTATAAAAA
450 AAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTTCATACTTTTTATAAAAA
*
927081 GAATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTT
515 GGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTT
927146 TTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATT
580 TTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATT
927211 TTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAAT
645 TTATAAAATAATATTTAG-ATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAAT
* *
927276 ATATATGTTTATTGTTTTTAATTTAATGATAATATATACCGTAACATAAAAAATAAATCATTAGA
709 ATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGA
* * *
927341 TACATATAATTACTAAATTGATATCTTAAAACTCACTCAAAAGATAACCATAAATTAATATTTTC
774 CACCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCATAAATTAATATTTTC
* *
927406 CAT-AGTGAAATAAGTATGGACACTTTTATAAAAATGATAGATAATTTACAATATAAGCACTACC
839 CATCAGTGAAATAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACC
*
927470 TATTACATTATATAAACGCTACCTATTACATTATATAAGTGCTACCTATTACATCATATTTTTAC
904 TATTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTAC
927535 CTATTATA
969 CTATTATA
*
927543 TTGAAATTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
927608 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
927673 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAATAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
927738 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAG--AATAAT-AATAT-TAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
* *
927803 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
257 ACCATAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
927868 CAAAAGATAACCTTAAATTAATGTTTTCTACAGTGAAATAAGTATGGACACTTTTATAAAAATGA
322 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGA
927933 TAGATATTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
387 TAGATATTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
* *
927998 GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTTTATACTTTTTATAAAAATG
452 GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTTCATACTTTTTATAAAAAGG
*
928063 ATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATATTTT
517 ATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTT
928127 CCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTT
582 CCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTT
928192 ATAAAATAATATTTAGATTTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATAT
647 ATAAAATAATATTTAGA-TTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATAT
* *
928257 ATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACG
711 ATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACA
* *
928322 CCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCA
776 CCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCATAAATTAATATTTTCCA
928387 -CAGTGAAATAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTA
841 TCAGTGAAATAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTA
928451 TTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCT
906 TTACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCT
928516 ATTATA
971 ATTATA
928522 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
928586 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTTATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
* *
928651 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
928716 TAACCAAAG-ATAAT-A-A-T-A-A-ATATGTTTATTGTTTTTAATTTAATAATAATATATACCA
196 TAACCAAAGAATAATAATATTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCA
* * *
928774 TAACGTAAAAAATAAATCAATAGACGCCTATAATTACTAAATTAATGTCTTAAAACTCAATCAAA
261 TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
928839 AGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATAGA
326 AGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATAGA
*
928904 TACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCGC
391 TATTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCGC
*
928969 TACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
456 TACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTTCATACTTTTTATAAAAAGGATCG
*
929034 ATAC-TTTTTTAAAGTTATGTAATTTATATTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCAC
521 ATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCAC
*
929098 CTACAATATTAATTTAATAATTTCATTTACACAAAAAAATTATTTGATTGTTTTGATATTTTATA
586 CTACAATATTAATTTAATAATTTCATTTGCAC-AAAAAATTATTTGATTGTTTTGATATTTTATA
*
929163 AAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATA
650 AAATAATATTTAG-ATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATA
929228 TGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACACCT
714 TGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACACCT
* *
929293 ATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCCTAAATTAATATTTT-CATCC
779 ATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCATAAATTAATATTTTCCATCA
* *
929357 GTGAAAAAAGTATGGTCACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTA
844 GTGAAATAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTA
*
929422 CATTATATAAACGCTACCTATTACATTATATAAGCGCTACATATTACATCATATTTTTACCTATT
909 CATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATT
929487 ATA
974 ATA
929490 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
929554 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
* *
929619 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
929684 TAACCAAAGATAATAATAAATATTTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAG--AATAAT-AATA-TTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
929749 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
257 ACCATAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
929814 CAAAAGAT
322 CAAAAGAT
929822 GTACATACCT
Statistics
Matches: 2192, Mismatches: 64, Indels: 43
0.95 0.03 0.02
Matches are distributed among these distances:
966 29 0.01
967 354 0.16
968 548 0.25
969 2 0.00
970 1 0.00
971 5 0.00
972 1 0.00
973 2 0.00
974 1 0.00
975 57 0.03
976 142 0.06
977 61 0.03
978 162 0.07
979 545 0.25
980 282 0.13
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.41
Consensus pattern (976 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
TAACCAAAGAATAATAATATTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCA
TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
AGATAACCTTAAATTAATGTTTTCCACAGTGAAATAAGTATGGACACTTTTATAAAAATGATAGA
TATTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCGC
TACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTTCATACTTTTTATAAAAAGGATCG
ATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCAC
CTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAA
AATAATATTTAGATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATATG
TTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACACCTAT
AATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCATAAATTAATATTTTCCATCAGT
GAAATAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACA
TTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTAT
A
Found at i:932633 original size:183 final size:183
Alignment explanation
Indices: 932320--932715 Score: 738
Period size: 183 Copynumber: 2.2 Consensus size: 183
932310 TACTTAAAAT
* *
932320 TACCAACACAATATTAAAAAGTATCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
932385 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
932450 CGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
* *
932503 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACTTGTTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
*
932568 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTTTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
*
932633 CGACACTTTTTGACAAGGTATCGACATATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
932686 TACCGACACAATATTAAAAAGTGTCGATAT
1 TACCGACACAATATTAAAAAGTGTCGATAT
932716 CGGTGAATTT
Statistics
Matches: 207, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 207 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (183 bp):
TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
CGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
Found at i:933714 original size:33 final size:33
Alignment explanation
Indices: 933677--933742 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
933667 CATCTTAATA
*
933677 TCACCCATTAACACCCCAACTTCTTTCACCACT
1 TCACCCATCAACACCCCAACTTCTTTCACCACT
* * *
933710 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCATCAACACCCCAACTTCTTTCACCACT
933743 CCATCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.47, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCATCAACACCCCAACTTCTTTCACCACT
Found at i:933801 original size:21 final size:21
Alignment explanation
Indices: 933776--933840 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
933766 CCCTTTATGC
* *
933776 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
933797 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
933818 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
933839 CT
1 CT
933841 TGATTGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:936077 original size:17 final size:18
Alignment explanation
Indices: 936055--936097 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
936045 ATATATCCGG
936055 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
936072 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
936092 TATCAT
1 TATCAT
936098 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:936115 original size:20 final size:19
Alignment explanation
Indices: 936060--936106 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
936050 TCCGGTATCA
936060 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
936079 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
936100 TTTTACC
1 TTTTACC
936107 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:936331 original size:181 final size:181
Alignment explanation
Indices: 936027--936499 Score: 662
Period size: 181 Copynumber: 2.6 Consensus size: 181
936017 CGTGCTTACG
* *
936027 AAAGTATCGACACTTTAAATATATCCGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
936092 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAATATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACA-TTTTTTAAAATATCGACACATTAT
936157 A-GACGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
130 AGGA-GCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * *
936208 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGATTTTATCATTTTGTTATCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
936273 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAA-TATCGACACATTAT
** * * *
936338 AGGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCTTTATATT
130 AGGAGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * * ** *
936390 AAAGTACCGACACTTTAAATGTATCTGGTAGCGCTTTACCGGTTTTATCATTTCAATACCGATTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * * *
936455 TGTCATAGTTTTACCTGTTATATAGTTTTGGATCGACACATTTTT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
936500 AATTTGGATC
Statistics
Matches: 257, Mismatches: 32, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
180 10 0.04
181 151 0.59
182 96 0.37
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (181 bp):
AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAATATCGACACATTATA
GGAGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:937078 original size:14 final size:14
Alignment explanation
Indices: 937061--937090 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
937051 TTTATATGAA
*
937061 TTTATTTATTTTAT
1 TTTATATATTTTAT
937075 TTTATATATTTTAT
1 TTTATATATTTTAT
937089 TT
1 TT
937091 AAATTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATATATTTTAT
Found at i:937119 original size:21 final size:21
Alignment explanation
Indices: 937086--937126 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
937076 TTATATATTT
*
937086 TATTTAAATTTTAAAATTTAG
1 TATTTAAAGTTTAAAATTTAG
* *
937107 TATTTTAAGTTTATAATTTA
1 TATTTAAAGTTTAAAATTTA
937127 AAATTTCAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (21 bp):
TATTTAAAGTTTAAAATTTAG
Found at i:939693 original size:3 final size:3
Alignment explanation
Indices: 939685--939716 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
939675 TTAAAAAATG
939685 AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A
939717 TATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:939875 original size:70 final size:69
Alignment explanation
Indices: 939752--939971 Score: 225
Period size: 70 Copynumber: 3.1 Consensus size: 69
939742 TCAAAAACAT
* * * * *
939752 ATAATATATAAATTTTC-AAAATGTTTTTTTTAAACTATATAATATACGAATGTTTTCAACATGT
1 ATAATATATAAGTTTTCAAAAACG---TTTTAAAACTATATAATATA-TAATGTTTTCAAAATGT
939816 TTTCAAAA
62 TTTCAAAA
*
939824 ATATTATATAAGTTTTCAAAAACGTTTTAAAACTATATAATATATAAATGTTTTCAAAATGTTTT
1 ATAATATATAAGTTTTCAAAAACGTTTTAAAACTATATAATATAT-AATGTTTTCAAAATGTTTT
939889 CAAAA
65 CAAAA
** * *
939894 CTATAATATATGTGTTTTCAAAAATGTTTTCAAAAAT-TAT-ATATATAA-GTTTTCAAAATGAT
1 --ATAATATATAAGTTTTCAAAAACGTTTT-AAAACTATATAATATATAATGTTTTCAAAATG-T
939956 TTT-AAAA
62 TTTCAAAA
*
939963 ATTATATAT
1 ATAATATAT
939972 TATATATATT
Statistics
Matches: 130, Mismatches: 12, Indels: 17
0.82 0.08 0.11
Matches are distributed among these distances:
67 8 0.06
69 16 0.12
70 48 0.37
71 6 0.05
72 42 0.32
73 10 0.08
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.44
Consensus pattern (69 bp):
ATAATATATAAGTTTTCAAAAACGTTTTAAAACTATATAATATATAATGTTTTCAAAATGTTTTC
AAAA
Found at i:939885 original size:11 final size:11
Alignment explanation
Indices: 939869--939893 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
939859 TATAATATAT
939869 AAATGTTTTCA
1 AAATGTTTTCA
939880 AAATGTTTTCA
1 AAATGTTTTCA
939891 AAA
1 AAA
939894 CTATAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (11 bp):
AAATGTTTTCA
Found at i:939923 original size:12 final size:12
Alignment explanation
Indices: 939906--939930 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
939896 ATAATATATG
939906 TGTTTTCAAAAA
1 TGTTTTCAAAAA
939918 TGTTTTCAAAAA
1 TGTTTTCAAAAA
939930 T
1 T
939931 TATATATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TGTTTTCAAAAA
Found at i:939976 original size:72 final size:74
Alignment explanation
Indices: 939734--939995 Score: 217
Period size: 70 Copynumber: 3.6 Consensus size: 74
939724 ATATATACAT
* * ** * *
939734 AAATATTTTCAAAAAC-ATATAATATATAAATTTTC-AAAATGTTTTTTTTAAACTATATAATAT
1 AAATGTTTT-AAAAACTATATATTATATATGTTTTCAAAAATG---TTTTAAAAATATATAATAT
**
939797 ACGAATGTTTTCA
62 ATAAATGTTTTCA
* * *
939810 ACATGTTTTCAAAAA-TAT-TA-TATA-A-GTTTTCAAAAACGTTTTAAAACTATATAATATATA
1 AAATGTTTT-AAAAACTATATATTATATATGTTTTCAAAAATGTTTTAAAAATATATAATATATA
939870 AATGTTTTCA
65 AATGTTTTCA
* *
939880 AAATGTTTTCAAAACTATA-A-TATATGTGTTTTCAAAAATGTTTTCAAAAAT-TAT-ATATAT-
1 AAATGTTTTAAAAACTATATATTATATATGTTTTCAAAAATGTTTT-AAAAATATATAATATATA
939940 AA-GTTTTCA
65 AATGTTTTCA
* * **
939949 AAATGATTTTAAAAATTATATATTATATATATTTTTTAAAATGTTTT
1 AAATG-TTTTAAAAACTATATATTATATATGTTTTCAAAAATGTTTT
939996 TTTAAAACTA
Statistics
Matches: 158, Mismatches: 18, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
69 16 0.10
70 59 0.37
71 7 0.04
72 44 0.28
73 11 0.07
74 4 0.03
75 2 0.01
76 15 0.09
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (74 bp):
AAATGTTTTAAAAACTATATATTATATATGTTTTCAAAAATGTTTTAAAAATATATAATATATAA
ATGTTTTCA
Found at i:940029 original size:2 final size:2
Alignment explanation
Indices: 940024--940099 Score: 102
Period size: 2 Copynumber: 39.0 Consensus size: 2
940014 TATTTTAAAA
* * *
940024 AT AT AT A- AA AT AT AT AT AT AT AT GT AT AT AT -T AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
940064 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
940100 GTATGTACAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
1 2 0.03
2 63 0.97
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (2 bp):
AT
Found at i:940841 original size:84 final size:84
Alignment explanation
Indices: 940737--941517 Score: 770
Period size: 84 Copynumber: 9.4 Consensus size: 84
940727 AAGGTCTTTA
* * * *
940737 GCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGTCGTTGAGCTGAGTGTAGTCAA
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTTGAGCTGAGTGTAGTCGA
*
940802 ACTCAAAGGTCTTTTGTTG
66 ACTCGAAGGTCTTTTGTTG
* * * * * *
940821 GCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCG
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTT-GAGCTGAGTGTAGTCG
* *
940885 AAATCGAAGGTCTTTGGTTG
65 AACTCGAAGGTCTTTTGTTG
* * * * *
940905 ACAGATACCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTTG-AGCTGAGTGTAGTCG
**
940970 AACTCGGGGGTC---T-TTG
65 AACTCGAAGGTCTTTTGTTG
* * *
940986 GCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTTGAGCTGAGTGTAGTCGA
* * *
941051 ACTCAAAGGTCTTTTGGTC
66 ACTCGAAGGTCTTTTGTTG
* * * * * * * * *
941070 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCTCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTTG-AGCTGAGTGTAGTCG
**
941135 AACTCGGGGGTC---T-TTG
65 AACTCGAAGGTCTTTTGTTG
* * *
941151 GCAGATAGCCCTTCTCGATTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCG
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTT-GAGCTGAGTGTAGTCG
* *
941215 AACTCAAAGGTCTTTGGTTG
65 AACTCGAAGGTCTTTTGTTG
* * *
941235 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTTG-AGCTGAGTGTAGTCG
* **
941300 AACTTGGGGGTC---T-TTG
65 AACTCGAAGGTCTTTTGTTG
* * * * *
941316 GCAGATAGCCCTTCTCGACTTAGGCTATGCTACAAATGATGTGCCGTTGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTTGAGCTGAGTGTAGTCGA
* * *
941381 ACTCAAAGGTCTTTTGGTC
66 ACTCGAAGGTCTTTTGTTG
* * * * * * * *
941400 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTTG-AGCTGAGTGTAGTCG
**
941465 AACTCGGGGGTC---T-TTG
65 AACTCGAAGGTCTTTTGTTG
* *
941481 GTAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
1 GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAAT
941518 AGTTTGTTTA
Statistics
Matches: 556, Mismatches: 121, Indels: 43
0.77 0.17 0.06
Matches are distributed among these distances:
80 67 0.12
81 160 0.29
82 2 0.00
83 5 0.01
84 229 0.41
85 93 0.17
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (84 bp):
GCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTTGAGCTGAGTGTAGTCGA
ACTCGAAGGTCTTTTGTTG
Found at i:941012 original size:249 final size:248
Alignment explanation
Indices: 940715--941517 Score: 967
Period size: 249 Copynumber: 3.2 Consensus size: 248
940705 AAGTTGAATA
* *
940715 TAATTGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* * *
940780 TCGTTGAGCTGAGTGTAGTCAAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAG
66 CCGTTGAGCTGAGTGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAG
* * *
940845 TTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAAATCGAAGGTCTTTGGTTGACAGA
131 TTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGA
*
940910 TACCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
195 TAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
**
940964 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* * ** * *
941029 CCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCGTTGAGCTGAGTGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAG
* * * * * **
941094 TTATGCTGTAAATGATGTGCTCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTT-G-G-CAGA
131 TTATGCTGCAAATGATGTGC-CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGA
* * * * * *
941156 TAGCCCTTCTCGATTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCG
195 TAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
* * * *
941209 TAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA
1 TAATCGAACTCGAAGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGA
* * * **** * *
941274 TGTGCCCTCGAAGCTGAGTGTAATCGAACTTGGGGGTC---T-TTGGCAGATAGCCCTTCTCGAC
62 TGTGCCGTTG-AGCTGAGTGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGAC
* * * *
941335 TTAGGCTATGCTACAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGT
126 TTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGT
* * * * *
941399 CACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
189 GACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
** *
941459 TAATCGAACTCGGGGGTCTTTGGTAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
1 TAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
941518 AGTTTGTTTA
Statistics
Matches: 463, Mismatches: 79, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
245 49 0.11
246 116 0.25
247 4 0.01
248 1 0.00
249 218 0.47
250 75 0.16
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (248 bp):
TAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
CCGTTGAGCTGAGTGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAG
TTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGAT
AACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTG
Found at i:941023 original size:165 final size:165
Alignment explanation
Indices: 940738--941517 Score: 1129
Period size: 165 Copynumber: 4.7 Consensus size: 165
940728 AGGTCTTTAG
* * * * * * *
940738 CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGTCGTTG-AGCTGAGTGTAGTCAA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*** * * * * * *
940802 ACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCC-
66 ACTCGGGGGTC---T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCG
* * *
940866 TTGGAGCTGAGCGTAGTCGAAATCGAAGGTC-TTTGGTTGA
127 TT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGG-TCA
*
940906 CAGATACCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
940971 ACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGA
66 ACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGA
941036 GCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCA
131 GCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCA
* * * * *
941071 CAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCTCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*
941136 ACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGATTTAAGCTATGCTGCAAATGATGTGCC-TTGG
66 ACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTT-G
**
941200 AGCTGAGCGTAGTCGAACTCAAAGGTC-TTTGGTTGG
130 AGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGG-TCA
941236 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
* * *
941301 ACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAGGCTATGCTACAAATGATGTGCCGTTGA
66 ACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGA
941366 GCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCA
131 GCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCA
* * * *
941401 CAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
*
941466 ACTCGGGGGTCTTTGGTAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
66 ACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
941518 AGTTTGTTTA
Statistics
Matches: 558, Mismatches: 47, Indels: 17
0.90 0.08 0.03
Matches are distributed among these distances:
164 7 0.01
165 471 0.84
166 15 0.03
168 43 0.08
169 22 0.04
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (165 bp):
CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
ACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGA
GCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCA
Found at i:941249 original size:330 final size:330
Alignment explanation
Indices: 940818--941517 Score: 1256
Period size: 330 Copynumber: 2.1 Consensus size: 330
940808 AGGTCTTTTG
* * * * *
940818 TTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* *
940883 CGAAATCGAAGGTCTTTGGTTGACAGATACCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
66 CGAAATCAAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
940948 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
131 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
*
941013 TGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGATAA
196 TGCTACAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGATAA
*
941078 CCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCTCTCGAAGCTGAGTGTAATCGAACTCGGG
261 CCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGG
941143 GGTCT
326 GGTCT
* *
941148 TTGGCAGATAGCCCTTCTCGATTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* *
941213 CGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
66 CGAAATCAAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
* *
941278 CCCTCGAAGCTGAGTGTAATCGAACTTGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAGGCTA
131 CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
941343 TGCTACAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGATAA
196 TGCTACAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGATAA
941408 CCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGG
261 CCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGG
941473 GGTCT
326 GGTCT
*
941478 TTGGTAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
941518 AGTTTGTTTA
Statistics
Matches: 353, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
330 353 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (330 bp):
TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
CGAAATCAAAGGTCTTTGGTTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG
CCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
TGCTACAAATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGGTCACAGATAA
CCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGG
GGTCT
Found at i:942863 original size:95 final size:95
Alignment explanation
Indices: 942690--942888 Score: 301
Period size: 95 Copynumber: 2.1 Consensus size: 95
942680 GGACAGCCCA
* * * * *
942690 ATATGTAAACACCTTTATCAGGTTAGCTGAAATCTTATCCATAAAGCCGGGGCGTTTAACCAATT
1 ATATATAATCACCTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGGGGCATTTAACCAATT
* *
942755 GCCTTAGAGGGACAGCTCAAGCTTTATTGT
66 GCCTTAGAGGGACAACTCAAGCTTTACTGT
942785 ATAGTATAATCACCTTTATCAGGCTAGCTG-AATATTATCCATAAAGCCGGGGCATTTAACCAAT
1 ATA-TATAATCACCTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGGGGCATTTAACCAAT
* *
942849 TGCTTTAGAGGGACAACTCAAGTTTTACTGT
65 TGCCTTAGAGGGACAACTCAAGCTTTACTGT
942880 ATATATAAT
1 ATATATAAT
942889 AGTGTAATCT
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
94 6 0.06
95 65 0.69
96 23 0.24
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (95 bp):
ATATATAATCACCTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGGGGCATTTAACCAATT
GCCTTAGAGGGACAACTCAAGCTTTACTGT
Found at i:947399 original size:3 final size:3
Alignment explanation
Indices: 947391--947435 Score: 72
Period size: 3 Copynumber: 14.3 Consensus size: 3
947381 TTAAAAAATG
947391 AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT -AAT AAT AAT AAT A
947436 TATATATACA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
3 34 0.85
4 6 0.15
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Done.