Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008504.1 Hibiscus syriacus cultivar Beakdansim tig00111356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2056749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 10
Found at i:1746735 original size:3 final size:3
Alignment explanation
Indices: 1746727--1746769 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
1746717 ATTTTTTATT
1746727 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1746770 GAAAAAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:1747406 original size:76 final size:76
Alignment explanation
Indices: 1746889--1747379 Score: 847
Period size: 76 Copynumber: 6.5 Consensus size: 76
1746879 GATGTAAATG
* * * * * * *
1746889 TTTGAAAACATCATGCACTGAAGGGCTTATAGACGACCCGAAGGTTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1746954 CCCGAAGGCTT
66 CCCGAAGGCTT
*
1746965 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1747030 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
1747041 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1747106 CCCGAAGGCTT
66 CCCGAAGGCTT
*
1747117 TTTGGAAACATCATGCACTGCAGGATTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
*
1747182 TCCGAAGGCTT
66 CCCGAAGGCTT
*
1747193 TTTGGAAACATCATGCACTGCATGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1747258 CCCGAAGGCTT
66 CCCGAAGGCTT
* *
1747269 TTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
1747334 CCCGAAGGCTT
66 CCCGAAGGCTT
1747345 TTTGGAAACATCATGCACTGCAGGACTTACAGATG
1 TTTGGAAACATCATGCACTGCAGGACTTACAGATG
1747380 TAGGAAATAG
Statistics
Matches: 396, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 396 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (76 bp):
TTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCT
CCCGAAGGCTT
Found at i:1748264 original size:22 final size:22
Alignment explanation
Indices: 1748239--1748315 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
1748229 AATAAAGCTT
*
1748239 TCATCTTTGAAAACAGAACCTA
1 TCATCTTTGAAAACAGAATCTA
*
1748261 TCATCTTTAAAAACAGAATCTA
1 TCATCTTTGAAAACAGAATCTA
*
1748283 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAACAGAATCTA
1748305 TCATCTTTGAA
1 TCATCTTTGAA
1748316 GAGTGTAGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (22 bp):
TCATCTTTGAAAACAGAATCTA
Found at i:1751208 original size:114 final size:114
Alignment explanation
Indices: 1751008--1751227 Score: 368
Period size: 114 Copynumber: 1.9 Consensus size: 114
1750998 GATCATGCAG
* * * *
1751008 TTCATCTTTCAATTCCAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATAATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
1751073 ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
* **
1751122 TTCATCTTTCAAATCCAATAATTGGTTTTGGGGTTCATACCAAATTAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATAATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
1751187 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTA
66 ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTTCTACTA
1751228 CGAGAACGTG
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 98 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATAATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAAAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
Found at i:1756221 original size:18 final size:18
Alignment explanation
Indices: 1756172--1756224 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
1756162 AATGAAATTT
1756172 AATATT-TGAAAAT-A-A
1 AATATTATGAAAATAATA
*
1756187 AATAATTA-AAAATATAATA
1 AAT-ATTATGAAA-ATAATA
1756206 AATATTATGAAAATAATA
1 AATATTATGAAAATAATA
1756224 A
1 A
1756225 GTAATAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
15 3 0.10
16 6 0.20
17 2 0.07
18 12 0.40
19 7 0.23
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (18 bp):
AATATTATGAAAATAATA
Found at i:1757022 original size:37 final size:37
Alignment explanation
Indices: 1756952--1757022 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
1756942 ATTTAAACAT
* *
1756952 ATAAAATTAAAATATAAATAAATAATGAGTAAAATAA
1 ATAAAATTAAAATATAAATAAAAAATGAATAAAATAA
1756989 ATAAAATTAAAACTA-AATATAAAAAAT-AATAAAA
1 ATAAAATTAAAA-TATAA-ATAAAAAATGAATAAAA
1757023 ACTTACAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
37 20 0.67
38 10 0.33
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.25
Consensus pattern (37 bp):
ATAAAATTAAAATATAAATAAAAAATGAATAAAATAA
Found at i:1758323 original size:3 final size:3
Alignment explanation
Indices: 1758315--1758358 Score: 79
Period size: 3 Copynumber: 14.3 Consensus size: 3
1758305 ATTTTTTATT
1758315 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TATA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA T
1758359 GAAAAAATTG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:1759327 original size:13 final size:13
Alignment explanation
Indices: 1759309--1759336 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1759299 CGTAGAGGGA
1759309 AAAACTAACAACC
1 AAAACTAACAACC
1759322 AAAACTAACAACC
1 AAAACTAACAACC
1759335 AA
1 AA
1759337 CTAGAAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.29, G:0.00, T:0.07
Consensus pattern (13 bp):
AAAACTAACAACC
Found at i:1763455 original size:33 final size:33
Alignment explanation
Indices: 1763396--1763532 Score: 157
Period size: 33 Copynumber: 4.0 Consensus size: 33
1763386 CCCATATGCA
* *
1763396 AAGTTGGCCACCTACTAAAGATGAATTTTCCAAT
1 AAGTTGGCCACCAAC-CAAGATGAATTTTCCAAT
1763430 AAGTTGGCCACCAACCAAGATGAATTTTCCAAT
1 AAGTTGGCCACCAACCAAGATGAATTTTCCAAT
* * *
1763463 AAGTTGGCCACCAACCAAGATGAAATTCCCATGT
1 AAGTTGGCCACCAACCAAGATGAATTTTCCA-AT
* *
1763497 GCAAAGTTGGCCACCTACCAAATATGAATTTTCCAA
1 ---AAGTTGGCCACCAACC-AAGATGAATTTTCCAA
1763533 CTTGTCAAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
33 46 0.52
34 15 0.17
37 15 0.17
38 12 0.14
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (33 bp):
AAGTTGGCCACCAACCAAGATGAATTTTCCAAT
Found at i:1763517 original size:37 final size:33
Alignment explanation
Indices: 1763375--1763493 Score: 139
Period size: 33 Copynumber: 3.5 Consensus size: 33
1763365 TTAGGGACCA
* *
1763375 AAGATGAAATTCCCATATGCAAAGTTGGCCACCTACTA
1 AAGATGAAATTCCCA-AT---AAGTTGGCCACCAAC-C
* *
1763413 AAGATGAATTTTCCAATAAGTTGGCCACCAACC
1 AAGATGAAATTCCCAATAAGTTGGCCACCAACC
* *
1763446 AAGATGAATTTTCCAATAAGTTGGCCACCAACC
1 AAGATGAAATTCCCAATAAGTTGGCCACCAACC
1763479 AAGATGAAATTCCCA
1 AAGATGAAATTCCCA
1763494 TGTGCAAAGT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
33 46 0.61
34 14 0.19
37 2 0.03
38 13 0.17
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.24
Consensus pattern (33 bp):
AAGATGAAATTCCCAATAAGTTGGCCACCAACC
Found at i:1768234 original size:33 final size:33
Alignment explanation
Indices: 1768175--1768265 Score: 155
Period size: 33 Copynumber: 2.7 Consensus size: 33
1768165 CCCATATGCA
**
1768175 AAGTTGGCCACCTGCCAAAGATGAATTTTCCAAT
1 AAGTTGGCCACCAACC-AAGATGAATTTTCCAAT
1768209 AAGTTGGCCACCAACCAAGATGAATTTTCCAAT
1 AAGTTGGCCACCAACCAAGATGAATTTTCCAAT
1768242 AAGTTGGCCACCAACCAAGATGAA
1 AAGTTGGCCACCAACCAAGATGAA
1768266 ATTCCCATGT
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
33 41 0.75
34 14 0.25
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (33 bp):
AAGTTGGCCACCAACCAAGATGAATTTTCCAAT
Found at i:1768290 original size:37 final size:33
Alignment explanation
Indices: 1768154--1768272 Score: 139
Period size: 33 Copynumber: 3.5 Consensus size: 33
1768144 TTAGGGACCA
**
1768154 AAGATGAAATTCCCATATGCAAAGTTGGCCACCTGCC
1 AAGATGAAATTCCCA-AT---AAGTTGGCCACCAACC
* *
1768191 AAAGATGAATTTTCCAATAAGTTGGCCACCAACC
1 -AAGATGAAATTCCCAATAAGTTGGCCACCAACC
* *
1768225 AAGATGAATTTTCCAATAAGTTGGCCACCAACC
1 AAGATGAAATTCCCAATAAGTTGGCCACCAACC
1768258 AAGATGAAATTCCCA
1 AAGATGAAATTCCCA
1768273 TGTGCAAAGT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
33 46 0.61
34 14 0.19
37 2 0.03
38 13 0.17
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (33 bp):
AAGATGAAATTCCCAATAAGTTGGCCACCAACC
Found at i:1769000 original size:3 final size:3
Alignment explanation
Indices: 1768992--1769088 Score: 124
Period size: 3 Copynumber: 31.7 Consensus size: 3
1768982 TTCATTTAAA
1768992 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
1769040 AAT TACT AAT T-T TAT TATT TAT TAC TAA TAT TAT TAT TAAT TAT TAT
1 TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T-AT TAT TAT
1769087 TA
1 TA
1769089 CAAACGGGCC
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
2 2 0.02
3 73 0.88
4 8 0.10
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:1771123 original size:20 final size:20
Alignment explanation
Indices: 1771093--1771152 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
1771083 TTCTTTCAAT
*
1771093 TTTTTTATTATTTATTATT-
1 TTTTATATTATTTATTATTA
1771112 TTTATATATTA-TTATATATTA
1 TTT-TATATTATTTAT-TATTA
1771133 TTTTAT-TTATTTATT-TTA
1 TTTTATATTATTTATTATTA
1771151 TT
1 TT
1771153 CAAGAATTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
18 5 0.14
19 11 0.31
20 17 0.47
21 3 0.08
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTATATTATTTATTATTA
Found at i:1771146 original size:23 final size:24
Alignment explanation
Indices: 1771091--1771147 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 24
1771081 TTTTCTTTCA
* *
1771091 ATTTTTTTATTATTTATTATTTTT
1 ATTTATTTATTATATATTATTTTT
*
1771115 ATATA-TTATTATATATTA-TTTT
1 ATTTATTTATTATATATTATTTTT
1771137 ATTTATTTATT
1 ATTTATTTATT
1771148 TTATTCAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 8 0.29
23 17 0.61
24 3 0.11
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (24 bp):
ATTTATTTATTATATATTATTTTT
Found at i:1771148 original size:13 final size:13
Alignment explanation
Indices: 1771091--1771152 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
1771081 TTTTCTTTCA
1771091 ATTT-TTTTA-TT
1 ATTTATTTTATTT
1771102 ATTTATTATT-TTT
1 ATTTATT-TTATTT
* *
1771115 ATATATTATTATAT
1 ATTTATT-TTATTT
1771129 A-TTATTTTATTT
1 ATTTATTTTATTT
1771141 ATTTATTTTATT
1 ATTTATTTTATT
1771153 CAAGAATTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
11 4 0.10
12 8 0.19
13 27 0.64
14 3 0.07
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
ATTTATTTTATTT
Found at i:1778451 original size:114 final size:114
Alignment explanation
Indices: 1778167--1778507 Score: 574
Period size: 114 Copynumber: 3.0 Consensus size: 114
1778157 AAGTGCCATG
1778167 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
*
1778232 TGGTTTGGTATGAACCCCAAAAACCAATCATTGGATTTTAAAGATGAATT
66 TGGTTTGGTATGAACCCC-AAAACCAATCATTGGATTTAAAAGATGAATT
1778282 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1778347 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAATT
66 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAATT
* * *
1778396 TGCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGAAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* * * * * * *
1778461 TGATTCGGTAGGAACCCCAGAACCGATCATTGGAATTGAAAGATGAA
66 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAA
1778508 CTGCATGATT
Statistics
Matches: 215, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
114 132 0.61
115 83 0.39
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (114 bp):
TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAATT
Found at i:1780722 original size:50 final size:50
Alignment explanation
Indices: 1780626--1780725 Score: 121
Period size: 50 Copynumber: 2.0 Consensus size: 50
1780616 TGATTGAGAA
* * * *
1780626 ATCTTAGCAGAAACCACAAGAAAGAATGAATGTGTTGTCAAGTGTTTTAC
1 ATCTAAGCAGAAACCACAAGAAAGAATGAATATGTTATCAAATGTTTTAC
* * *
1780676 ATCTAAGCTGAAACCACATGAGATGAA-GAATATGTTATCAAATGTTTTAC
1 ATCTAAGCAGAAACCACAAGA-AAGAATGAATATGTTATCAAATGTTTTAC
1780726 GAACCAGTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 38 0.90
51 4 0.10
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (50 bp):
ATCTAAGCAGAAACCACAAGAAAGAATGAATATGTTATCAAATGTTTTAC
Found at i:1781096 original size:21 final size:22
Alignment explanation
Indices: 1781067--1781120 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
1781057 ATCTACACTC
**
1781067 TTCAAAGATGGTAGATTC-CTT
1 TTCAAAGATGACAGATTCTCTT
*
1781088 TTTAAAGATGACAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
1781110 TTCAAAGATGA
1 TTCAAAGATGA
1781121 AAGCTTTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCTCTT
Found at i:1781718 original size:113 final size:113
Alignment explanation
Indices: 1781537--1782410 Score: 1407
Period size: 113 Copynumber: 7.7 Consensus size: 113
1781527 CCATCATTCA
* * * *
1781537 ATGGATCAACATTTCCAGAG-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
1 ATGGATTATCATTGCCAGAGAAG-GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA
* * ** * *
1781601 TTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCAAATCCATCA-TCTA
65 TTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACT-TG
* * * *
1781650 ATGGATCAACATTTCCAGAG-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAG
1 ATGGATTATCATTGCCAGAGAAG-GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA
* * ** *
1781714 TTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCAAATCCATCA-TCTG
65 TTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACT-TG
1781763 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
1 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
1781828 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
66 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
1781876 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
1 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
1781941 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
66 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
1781989 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
1 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
1782054 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
66 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
1782102 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
1 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
1782167 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
66 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
1782215 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
1 ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
*
1782280 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
66 TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
* * * * *
1782328 ATGGATCAACATTGCCAG-GTAGAGTTCACAATGAGAAGAACTCGTCATCTGAAGAAGGAGGAAG
1 ATGGATTATCATTGCCAGAGAAG-GTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAG
*
1782392 AAGTTCATAATGAGAAGAA
62 AAATTCATAATGAGAAGAA
1782411 CTCATCAAGA
Statistics
Matches: 738, Mismatches: 17, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
112 3 0.00
113 694 0.94
114 3 0.00
115 1 0.00
116 37 0.05
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (113 bp):
ATGGATTATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAAT
TCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTG
Found at i:1782666 original size:3 final size:3
Alignment explanation
Indices: 1782658--1782750 Score: 98
Period size: 3 Copynumber: 30.3 Consensus size: 3
1782648 TTTTCATTTA
* * *
1782658 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA ATA ATT ATA
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
1782706 ATT ACTA ATT -TT ATT ATTT ATT ACT AAT ATT ATT ATT AATT ATT A
1 ATT A-TT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT -ATT ATT A
1782751 CAAACGGGCC
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
2 2 0.03
3 67 0.87
4 8 0.10
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:1782730 original size:19 final size:19
Alignment explanation
Indices: 1782663--1782747 Score: 92
Period size: 19 Copynumber: 4.8 Consensus size: 19
1782653 ATTTAATTAT
* *
1782663 TATTATTATT-ATTATTAT
1 TATTATTATTAATTACTAA
1782681 TATTATTATT-ATTA-TAA
1 TATTATTATTAATTACTAA
1782698 TA--ATTA-TAATTACTAA
1 TATTATTATTAATTACTAA
* *
1782714 TTTTATTATTTATTACTAA
1 TATTATTATTAATTACTAA
1782733 TATTATTATTAATTA
1 TATTATTATTAATTA
1782748 TTACAAACGG
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
14 1 0.02
15 8 0.14
16 4 0.07
17 4 0.07
18 18 0.32
19 22 0.39
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTATTATTAATTACTAA
Found at i:1788560 original size:60 final size:60
Alignment explanation
Indices: 1788402--1788562 Score: 204
Period size: 60 Copynumber: 2.7 Consensus size: 60
1788392 GAACACCTTG
* ** *
1788402 GGTCCATAAGGACTTACCCTA-GCTGAAA-CATAAGAGCCACCTGAGGTGAGTGCCCTCA
1 GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAGAGCCACCTGAGGTGAGTGCCCTCA
* **
1788460 GGTTCATAAGGACTTACCCAATGCACAAAGCAAGTGAGCCACCTGAGAG-GAGTGCCC-CTA
1 GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAGAGCCACCTGAG-GTGAGTGCCCTC-A
*
1788520 GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAAAGCCACC
1 GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAGAGCCACC
1788563 ATAAGGAAGT
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
58 19 0.22
59 6 0.07
60 62 0.70
61 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.22, T:0.16
Consensus pattern (60 bp):
GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAGAGCCACCTGAGGTGAGTGCCCTCA
Found at i:1788574 original size:60 final size:57
Alignment explanation
Indices: 1788402--1788597 Score: 189
Period size: 60 Copynumber: 3.3 Consensus size: 57
1788392 GAACACCTTG
* ** * *
1788402 GGTCCATAAGGACTTACCCTA-GCTGAAA-CATAAGAGCCACCTGAGGTGAGTGCCCTCA
1 GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAGAGCCACCT-AAG-GAGTGCCCT-A
* **
1788460 GGTTCATAAGGACTTACCCAATGCACAAAGCAAGTGAGCCACCTGAGAGGAGTGCCCCTA
1 GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAGAGCCACCT-A-AGGAGTG-CCCTA
* *
1788520 GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAAAGCCACCATAAGGAAGTGCCTTA
1 GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAGAGCCACC-TAAGG-AGTGCCCTA
* *
1788579 GGGTCCGTAAGGTCTTACC
1 -GGTCCATAAGGACTTACC
1788598 ACTAGGCCCA
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
58 19 0.16
59 12 0.10
60 79 0.68
61 6 0.05
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.18
Consensus pattern (57 bp):
GGTCCATAAGGACTTACCCAATGCACAAAGCAAAAGAGCCACCTAAGGAGTGCCCTA
Found at i:1790061 original size:39 final size:40
Alignment explanation
Indices: 1790007--1790099 Score: 152
Period size: 40 Copynumber: 2.4 Consensus size: 40
1789997 TGAGTCAAAT
* *
1790007 ATATGAACCGTAGTGCA-TACACATAAGGTCGTGCCCACC
1 ATATGTACCGAAGTGCATTACACATAAGGTCGTGCCCACC
*
1790046 ATATGTACCGAAGTGCATTACACATAAGGTCGTGGCCACC
1 ATATGTACCGAAGTGCATTACACATAAGGTCGTGCCCACC
1790086 ATATGTACCGAAGT
1 ATATGTACCGAAGT
1790100 ACTTAATCGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
39 15 0.30
40 35 0.70
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (40 bp):
ATATGTACCGAAGTGCATTACACATAAGGTCGTGCCCACC
Found at i:1791252 original size:29 final size:29
Alignment explanation
Indices: 1791178--1791252 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
1791168 AATATTTAAC
* * * *
1791178 AATTACACAATAATCCACAACTTTTCTAA
1 AATTACAAAATGATCCCCAACTTTTCAAA
* **
1791207 AATTATAATTTGATCCCCAACTTTTCAAA
1 AATTACAAAATGATCCCCAACTTTTCAAA
1791236 AATTACAAAATGATCCC
1 AATTACAAAATGATCCC
1791253 TAAATTTTTA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.43, C:0.23, G:0.03, T:0.32
Consensus pattern (29 bp):
AATTACAAAATGATCCCCAACTTTTCAAA
Found at i:1798473 original size:21 final size:21
Alignment explanation
Indices: 1798449--1798545 Score: 112
Period size: 21 Copynumber: 4.7 Consensus size: 21
1798439 AAAGTGCCAT
*
1798449 AGTACACAAAGTACTACTACA
1 AGTACACAAAGTACTACTCCA
1798470 AGTACACAAAGTACT-CTTCCA
1 AGTACACAAAGTACTAC-TCCA
* *
1798491 TAGTACATAAAGTAATACTCCA
1 -AGTACACAAAGTACTACTCCA
*
1798513 A-T--ACAAAGTACTATTCCA
1 AGTACACAAAGTACTACTCCA
1798531 AGTACACAAAGTACT
1 AGTACACAAAGTACT
1798546 CTTACGAAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
18 14 0.22
19 1 0.02
20 2 0.03
21 29 0.45
22 17 0.27
23 1 0.02
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.24
Consensus pattern (21 bp):
AGTACACAAAGTACTACTCCA
Found at i:1803546 original size:20 final size:20
Alignment explanation
Indices: 1803523--1803560 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1803513 TAAGACATGG
1803523 AATTAATAAAG-AAAATAGCA
1 AATTAA-AAAGTAAAATAGCA
*
1803543 AATTGAAAAGTAAAATAG
1 AATTAAAAAGTAAAATAG
1803561 ATTGAACGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.63, C:0.03, G:0.13, T:0.21
Consensus pattern (20 bp):
AATTAAAAAGTAAAATAGCA
Found at i:1804642 original size:19 final size:20
Alignment explanation
Indices: 1804615--1804659 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
1804605 AAATAAAATA
1804615 AATAA-ATAAATAATA-AAT
1 AATAATATAAATAATATAAT
*
1804633 AGTAATATAAATAATATAAT
1 AATAATATAAATAATATAAT
1804653 AATAATA
1 AATAATA
1804660 ACGAAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (20 bp):
AATAATATAAATAATATAAT
Found at i:1804924 original size:30 final size:33
Alignment explanation
Indices: 1804865--1804926 Score: 108
Period size: 32 Copynumber: 1.9 Consensus size: 33
1804855 ACATTTTTTT
1804865 AAATATTTTCCAAAACTATATATTATATATAAA
1 AAATATTTTCCAAAACTATATATTATATATAAA
*
1804898 AAATGTTTT-CAAAACTATATATTATATAT
1 AAATATTTTCCAAAACTATATATTATATAT
1804927 GTTATGAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 20 0.71
33 8 0.29
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (33 bp):
AAATATTTTCCAAAACTATATATTATATATAAA
Found at i:1813008 original size:24 final size:24
Alignment explanation
Indices: 1812976--1813034 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
1812966 TGTATCTTTA
*
1812976 CAGCAGACGAGGCTTTCATTTTTG
1 CAGCGGACGAGGCTTTCATTTTTG
*
1813000 CAGCGGACGAGGCTTTCGTTTTTG
1 CAGCGGACGAGGCTTTCATTTTTG
1813024 CAGCGGACGAG
1 CAGCGGACGAG
1813035 TTGCATAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.19, C:0.22, G:0.32, T:0.27
Consensus pattern (24 bp):
CAGCGGACGAGGCTTTCATTTTTG
Found at i:1818083 original size:21 final size:21
Alignment explanation
Indices: 1818058--1818099 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1818048 CTTGGTCAGG
*
1818058 TCGGGTCAGTTTGTTGGGTCA
1 TCGGGTCAGTTTGCTGGGTCA
*
1818079 TCGGGTTAGTTTGCTGGGTCA
1 TCGGGTCAGTTTGCTGGGTCA
1818100 GGCTTACCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.10, C:0.14, G:0.38, T:0.38
Consensus pattern (21 bp):
TCGGGTCAGTTTGCTGGGTCA
Found at i:1818331 original size:14 final size:15
Alignment explanation
Indices: 1818312--1818340 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1818302 ACTATATATT
1818312 ATATGTTTTC-AAAA
1 ATATGTTTTCGAAAA
1818326 ATATGTTTTCGAAAA
1 ATATGTTTTCGAAAA
1818341 CTATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (15 bp):
ATATGTTTTCGAAAA
Found at i:1818353 original size:38 final size:35
Alignment explanation
Indices: 1818264--1818501 Score: 103
Period size: 38 Copynumber: 6.4 Consensus size: 35
1818254 AAAGCATTTA
* * ****
1818264 AAAACTATAGACTATATGTTTTC-AAATATTTAAAA
1 AAAACTATATA-TATATGTTTTCAAAAAATTTTTCG
1818299 AAAACTATATATTATATGTTTTCAAAAATATGTTTTCG
1 AAAACTATATA-TATATGTTTTCAAAAA-AT-TTTTCG
* *
1818337 AAAACTATATTATATATATGTTT-AATTAAAACTTTTT-T
1 AAAACTATA-TATATATGT-TTTCAA--AAAA-TTTTTCG
* *
1818375 AAAACCATATATTATACGTTTTC-AAAAATATTTTC-
1 AAAACTATATA-TATATGTTTTCAAAAAAT-TTTTCG
* * *
1818410 AAAACTATTTATTATATATATTTTTAAAAAAATATTTT-T
1 AAAACTA--TA-TATATAT-GTTTTCAAAAAAT-TTTTCG
* *
1818449 AAAACTATATATTATATATGTTATGAAAAAATACTTTTCG
1 AAAAC--TATA-TATATATGTTTTCAAAAAAT--TTTTCG
1818489 -AAACTATATATAT
1 AAAACTATATATAT
1818502 TATATATATA
Statistics
Matches: 160, Mismatches: 21, Indels: 43
0.71 0.09 0.19
Matches are distributed among these distances:
34 1 0.01
35 35 0.22
36 8 0.05
37 18 0.11
38 48 0.30
39 44 0.28
40 4 0.03
41 2 0.01
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.44
Consensus pattern (35 bp):
AAAACTATATATATATGTTTTCAAAAAATTTTTCG
Found at i:1818389 original size:76 final size:74
Alignment explanation
Indices: 1818299--1818508 Score: 239
Period size: 76 Copynumber: 2.8 Consensus size: 74
1818289 ATATTTAAAA
1818299 AAAACTATATATTATATGTTTTCAAAAATATGTTTTCGAAAACTATATTATATATATGTTTAATT
1 AAAACTATATATTATATGTTTTCAAAAATAT-TTTTCGAAAACTATATTATATATATGTTTAA--
*
1818364 AAAACT-TTTTT
63 AAAAATATTTTT
* * *
1818375 AAAACCATATATTATACGTTTTCAAAAATA-TTTTC-AAAACTATTTATTATATATATTTTTAAA
1 AAAACTATATATTATATGTTTTCAAAAATATTTTTCGAAAACTA--TATTATATATATGTTTAAA
1818438 AAAATATTTTT
64 AAAATATTTTT
** *
1818449 AAAACTATATATTATATATGTTATGAAAAAATACTTTTCG-AAACTATATATATTATATAT
1 AAAACTATATA-T-TATATGTT-TTCAAAAATATTTTTCGAAAACTATAT-TA-TATATAT
1818509 ATATACTAAA
Statistics
Matches: 116, Mismatches: 8, Indels: 18
0.82 0.06 0.13
Matches are distributed among these distances:
73 12 0.10
74 20 0.17
75 18 0.16
76 38 0.33
77 10 0.09
78 18 0.16
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (74 bp):
AAAACTATATATTATATGTTTTCAAAAATATTTTTCGAAAACTATATTATATATATGTTTAAAAA
AATATTTTT
Found at i:1818453 original size:39 final size:39
Alignment explanation
Indices: 1818398--1818510 Score: 138
Period size: 39 Copynumber: 2.8 Consensus size: 39
1818388 ATACGTTTTC
*
1818398 AAAAATATTTTCAAAACTATTTATTATATATATTTTTAA
1 AAAAATATTTTCAAAACTATTTATTATATATATTTATAA
* * * *
1818437 AAAAATATTTTTAAAACTATATATTATATAT-GTTATGA
1 AAAAATATTTTCAAAACTATTTATTATATATATTTATAA
*
1818475 AAAAATACTTTTCGAAACTATATATATTATATATAT
1 AAAAATA-TTTTCAAAACTAT-T-TATTATATATAT
1818511 ATACTAAATA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
38 11 0.18
39 40 0.66
41 10 0.16
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (39 bp):
AAAAATATTTTCAAAACTATTTATTATATATATTTATAA
Found at i:1818460 original size:16 final size:15
Alignment explanation
Indices: 1818423--1818461 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
1818413 ACTATTTATT
1818423 ATATATATTTTTAAA
1 ATATATATTTTTAAA
*
1818438 A-AAATATTTTTAAA
1 ATATATATTTTTAAA
1818452 ACTATATATT
1 A-TATATATT
1818462 ATATATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 13 0.65
15 1 0.05
16 6 0.30
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATATATTTTTAAA
Found at i:1820289 original size:17 final size:17
Alignment explanation
Indices: 1820261--1820318 Score: 73
Period size: 16 Copynumber: 3.4 Consensus size: 17
1820251 TTGAAAATTG
1820261 TAAAAAACTAAACTAAAT
1 TAAAAAA-TAAACTAAAT
1820279 TAAAAAATAAA-TAAAT
1 TAAAAAATAAACTAAAT
* * *
1820295 CAAAAAATAAGCTAAAA
1 TAAAAAATAAACTAAAT
1820312 TAAAAAA
1 TAAAAAA
1820319 ATTTAAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.40
17 14 0.40
18 7 0.20
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.19
Consensus pattern (17 bp):
TAAAAAATAAACTAAAT
Found at i:1820333 original size:17 final size:16
Alignment explanation
Indices: 1820307--1820563 Score: 89
Period size: 17 Copynumber: 15.4 Consensus size: 16
1820297 AAAAATAAGC
*
1820307 TAAAAT-AAAAAAATT
1 TAAAATAAAAAAAAAT
1820322 TAAAATAAAAAAACAAT
1 TAAAATAAAAAAA-AAT
*
1820339 TCAAAAAGAAGAAAAAGAAAT
1 T--AAAA-TA-AAAAA-AAAT
* *
1820360 TAAATTAAAATTAAAAT
1 TAAAATAAAA-AAAAAT
**
1820377 TAAAATTAAAAATCAAT
1 TAAAA-TAAAAAAAAAT
*
1820394 TAAAATAAGAAAATGAGA-
1 TAAAATAA-AAAA--AAAT
1820412 TAAAATTAAAAAAACAAT
1 TAAAA-TAAAAAAA-AAT
1820430 TAAAATAAAAAAATAAAT
1 TAAAAT-AAAAAA-AAAT
* * *
1820448 TATATTAAAAAACAAT
1 TAAAATAAAAAAAAAT
* * *
1820464 TAAAAGAGGAAAAGAGA-
1 TAAAATA--AAAAAAAAT
*
1820481 T-AAA-AAAATAAAA-
1 TAAAATAAAAAAAAAT
* *
1820494 TAGAATAAAAAACAAT
1 TAAAATAAAAAAAAAT
* **
1820510 TTAAA-GGAAAAAAAT
1 TAAAATAAAAAAAAAT
* *
1820525 AAAAATATAATAAAAA-
1 TAAAATA-AAAAAAAAT
*
1820541 TAAAAGTAAAAAACAAT
1 TAAAA-TAAAAAAAAAT
1820558 TAAAAT
1 TAAAAT
1820564 GTATATTAAA
Statistics
Matches: 175, Mismatches: 41, Indels: 51
0.66 0.15 0.19
Matches are distributed among these distances:
13 6 0.03
14 2 0.01
15 24 0.14
16 34 0.19
17 47 0.27
18 39 0.22
19 12 0.07
20 1 0.01
21 9 0.05
22 1 0.01
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.21
Consensus pattern (16 bp):
TAAAATAAAAAAAAAT
Found at i:1820334 original size:18 final size:17
Alignment explanation
Indices: 1820313--1820468 Score: 91
Period size: 17 Copynumber: 8.8 Consensus size: 17
1820303 AAGCTAAAAT
*
1820313 AAAAAAATTTAAAATAA
1 AAAAAAAATTAAAATAA
* *
1820330 AAAAACAATTCAAAAAGAA
1 AAAAAAAATT--AAAATAA
*
1820349 GAAAAAGAAATTAAATTAA
1 -AAAAA-AAATTAAAATAA
** *
1820368 AATTAAAATTAAAATTA
1 AAAAAAAATTAAAATAA
**
1820385 AAAATCAATTAAAATAA
1 AAAAAAAATTAAAATAA
* *
1820402 GAAAATGAGA-TAAAATTAA
1 -AAAA-AAAATTAAAA-TAA
*
1820421 AAAAACAATTAAAATAA
1 AAAAAAAATTAAAATAA
* *
1820438 AAAAATAAATT-ATATTA
1 AAAAA-AAATTAAAATAA
*
1820455 AAAAACAATTAAAA
1 AAAAAAAATTAAAA
1820469 GAGGAAAAGA
Statistics
Matches: 103, Mismatches: 26, Indels: 20
0.69 0.17 0.13
Matches are distributed among these distances:
16 4 0.04
17 50 0.49
18 25 0.24
19 15 0.15
20 5 0.05
21 4 0.04
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (17 bp):
AAAAAAAATTAAAATAA
Found at i:1820354 original size:53 final size:51
Alignment explanation
Indices: 1820297--1820442 Score: 134
Period size: 53 Copynumber: 2.7 Consensus size: 51
1820287 AAATAAATCA
* *
1820297 AAAAATAAGCTAAAATAAAAAAATTTAAAATAAAAAAACAATTCAAAAAGAAG
1 AAAAATAAGATAAAATAAAAAAAATTAAAATAAAAAAACAATT--AAAAGAAG
* * * * *
1820350 AAAAAGAA-ATTAAATTAAAATTAAAATTAAAATTAAAAATCAATTAAAATAAG
1 AAAAATAAGA-TAAAATAAAA--AAAATTAAAATAAAAAAACAATTAAAAGAAG
*
1820403 -AAAATGAGATAAAATTAAAAAAACAATTAAAATAAAAAAA
1 AAAAATAAGATAAAA-T-AAAAAA-AATTAAAATAAAAAAA
1820443 TAAATTATAT
Statistics
Matches: 74, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
52 11 0.15
53 39 0.53
54 4 0.05
55 20 0.27
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (51 bp):
AAAAATAAGATAAAATAAAAAAAATTAAAATAAAAAAACAATTAAAAGAAG
Found at i:1820370 original size:6 final size:6
Alignment explanation
Indices: 1820356--1820387 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
1820346 GAAGAAAAAG
1820356 AAATT- AAATTA AAATTA AAATTA AAATTA AAA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAA
1820388 ATCAATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAATTA
Found at i:1820468 original size:46 final size:45
Alignment explanation
Indices: 1820415--1820562 Score: 113
Period size: 46 Copynumber: 3.2 Consensus size: 45
1820405 AATGAGATAA
* * *
1820415 AATTAAAAAAACAATTAAAATAAAAAAATAAATTATATTAAAAAAC
1 AATTAAAAAAA-AAATAAAATAAAAAAATAAATTAAAATAAAAAAC
* * * * *
1820461 AATTAAAAGAGGAAAA-GAGATAAAAAAATAAAATAGAATAAAAAAC
1 AATTAAAA-A-AAAAATAAAATAAAAAAATAAATTAAAATAAAAAAC
* *
1820507 AATTTAAAGGAAAAAAATAAAAATATAATAA-AAA-TAAAAGTAAAAAAC
1 AA-TTAAA--AAAAAAAT-AAAATAAAAAAATAAATTAAAA-TAAAAAAC
1820555 AATTAAAA
1 AATTAAAA
1820563 TGTATATTAA
Statistics
Matches: 81, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
45 1 0.01
46 35 0.43
47 21 0.26
48 15 0.19
49 9 0.11
ACGTcount: A:0.72, C:0.03, G:0.06, T:0.19
Consensus pattern (45 bp):
AATTAAAAAAAAAATAAAATAAAAAAATAAATTAAAATAAAAAAC
Found at i:1820493 original size:36 final size:35
Alignment explanation
Indices: 1820378--1820493 Score: 96
Period size: 36 Copynumber: 3.3 Consensus size: 35
1820368 AATTAAAATT
* *
1820378 AAAATTAAAAATCAATTAAAATAAGAAAATGAGATAA
1 AAAAATAAAAAACAATTAAAAT-AGAAAA-GAGATAA
**
1820415 AATTA-AAAAAACAATTAAAATA-AAAA-A-ATAA
1 AAAAATAAAAAACAATTAAAATAGAAAAGAGATAA
* * *
1820446 ATTATATTAAAAAACAATTAAAAGAGGAAAAGAGATAA
1 A--AAAATAAAAAACAATTAAAATA-GAAAAGAGATAA
1820484 AAAAATAAAA
1 AAAAATAAAA
1820494 TAGAATAAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
31 5 0.08
32 1 0.02
33 2 0.03
34 20 0.32
35 1 0.02
36 26 0.41
37 3 0.05
38 5 0.08
ACGTcount: A:0.71, C:0.03, G:0.07, T:0.20
Consensus pattern (35 bp):
AAAAATAAAAAACAATTAAAATAGAAAAGAGATAA
Found at i:1823605 original size:53 final size:52
Alignment explanation
Indices: 1823475--1823605 Score: 145
Period size: 53 Copynumber: 2.5 Consensus size: 52
1823465 TCTGTTTTTT
* *
1823475 TTTTGTTAAACGCAACTGATTTTTTCAAAATAATTGTTAGTTTTATTTTTAAA
1 TTTTGTTAAACGCGACTGA-TTTTACAAAATAATTGTTAGTTTTATTTTTAAA
* * * * * *
1823528 TTTTATTAAATGTGGCTGCTTTTTACAAAATAATTGTTAGTTTTTTCTTTTAAA
1 TTTTGTTAAACGCGACTG-ATTTTACAAAATAATTGTTAGTTTTAT-TTTTAAA
* *
1823582 TTTTGCTAAACGCGATTGATTTTA
1 TTTTGTTAAACGCGACTGATTTTA
1823606 TTATTTGATA
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
53 42 0.69
54 19 0.31
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.51
Consensus pattern (52 bp):
TTTTGTTAAACGCGACTGATTTTACAAAATAATTGTTAGTTTTATTTTTAAA
Found at i:1824678 original size:194 final size:193
Alignment explanation
Indices: 1824321--1824731 Score: 488
Period size: 194 Copynumber: 2.1 Consensus size: 193
1824311 GTGTTTTGCT
* *
1824321 ACAATATCTCTTTCGTCACATATAAGTTGATTTTAATGCATTATTTGTGACAATATAAATTATAA
1 ACAATATCTCTTTCGTCACATATAAGTTGATTTTAATGCATTATCTGTGACAATATAAATCATAA
** * *
1824386 ATAACGAAATCTTATTTAATTTAGTGACGTAACCAACTGTTATAGAATATAAATTATAGAGTGAC
66 ATAACGAAATCTTACATAATTTAGTGACATAACCAACTGTCATAGAATATAAATTATAGAGTGAC
* * *
1824451 GTTATGCATAAACTTCATTCATAATATTATTAGGTAAC-ATTTATA-TCATGTCACTAAAAATGT
131 GTTATACATAAACTTCATCCATAATACTATTAGGTAACGA--TATACT-ATGTCACTAAAAATGT
1824514 G
193 G
* * * *
1824515 ACAATATCTCTTTCGTCACATATAGGTTGATTTTAATGTATTATCTGTGACTATATAAATCATTA
1 ACAATATCTCTTTCGTCACATATAAGTTGATTTTAATGCATTATCTGTGACAATATAAATCATAA
* ** ** * * *
1824580 ATAACGAAATTTTACATAATTTAGTGACATAATTAGTTGTCATTGAATATTAATTATATAGTGAC
66 ATAACGAAATCTTACATAATTTAGTGACATAACCAACTGTCATAGAATATAAATTATAGAGTGAC
* ** * * *
1824645 GTTATATATAAA-TGTCATCCATGCTACTATTAGGTGACGATATACTATGTTACTAACAATGTG
131 GTTATACATAAACT-TCATCCATAATACTATTAGGTAACGATATACTATGTCACTAAAAATGTG
* *
1824708 ACAAT-TTTCTTTTCGTCACTTATA
1 ACAATATCTC-TTTCGTCACATATA
1824732 CAATGAAACT
Statistics
Matches: 184, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
192 3 0.02
193 38 0.21
194 142 0.77
195 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (193 bp):
ACAATATCTCTTTCGTCACATATAAGTTGATTTTAATGCATTATCTGTGACAATATAAATCATAA
ATAACGAAATCTTACATAATTTAGTGACATAACCAACTGTCATAGAATATAAATTATAGAGTGAC
GTTATACATAAACTTCATCCATAATACTATTAGGTAACGATATACTATGTCACTAAAAATGTG
Found at i:1825343 original size:21 final size:21
Alignment explanation
Indices: 1825319--1825367 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
1825309 CTTTGAATTG
1825319 GATATCCGTCATTGTGAAGTT
1 GATATCCGTCATTGTGAAGTT
*
1825340 GATATTCGTCATTGTGAAGTT
1 GATATCCGTCATTGTGAAGTT
*
1825361 GAAATCC
1 GATATCC
1825368 CATCTTGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (21 bp):
GATATCCGTCATTGTGAAGTT
Found at i:1825963 original size:14 final size:15
Alignment explanation
Indices: 1825944--1825974 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
1825934 ATCCACCTTA
1825944 TTTTCTTTTTA-AAT
1 TTTTCTTTTTACAAT
1825958 TTTTCTTTTTACAAT
1 TTTTCTTTTTACAAT
1825973 TT
1 TT
1825975 AGGGTGTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTCTTTTTACAAT
Found at i:1829628 original size:27 final size:26
Alignment explanation
Indices: 1829591--1829642 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
1829581 AAATGATCGA
*
1829591 AAAATTAAATTCAAAATAGAATGAAAG
1 AAAATTAAATTCAAAAGA-AATGAAAG
*
1829618 AAAATTGAATTCAAAAGAAATGAAA
1 AAAATTAAATTCAAAAGAAATGAAA
1829643 TAAGAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.63, C:0.04, G:0.12, T:0.21
Consensus pattern (26 bp):
AAAATTAAATTCAAAAGAAATGAAAG
Found at i:1836717 original size:12 final size:13
Alignment explanation
Indices: 1836696--1836725 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
1836686 AAAAGTTAGC
1836696 TAAAATTAAAAAA
1 TAAAATTAAAAAA
1836709 TAAAA-TAAAAAA
1 TAAAATTAAAAAA
1836721 TAAAA
1 TAAAA
1836726 AACAATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAAATTAAAAAA
Found at i:1836855 original size:16 final size:15
Alignment explanation
Indices: 1836822--1836909 Score: 50
Period size: 16 Copynumber: 5.3 Consensus size: 15
1836812 TTAAAAAAAC
*
1836822 AAATAAAATAAAGATA
1 AAATAAAA-AAAAATA
1836838 AAATAAAAAAAAATTA
1 AAATAAAAAAAAA-TA
*
1836854 AAAGAATTAAAAGAAATA
1 AAATAA--AAAA-AAATA
* *
1836872 AAATTAAAAATAATTA
1 AAA-TAAAAAAAAATA
* *
1836888 AAAGAAGGAAAGAAATA
1 AAATAA--AAAAAAATA
1836905 AAATA
1 AAATA
1836910 GAATAGAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
15 6 0.11
16 22 0.39
17 14 0.25
18 9 0.16
19 5 0.09
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (15 bp):
AAATAAAAAAAAATA
Found at i:1836864 original size:25 final size:25
Alignment explanation
Indices: 1836836--1836890 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
1836826 AAAATAAAGA
1836836 TAAAATAAAAAAAAATT-AAAAGAAT
1 TAAAA-AAAAAAAAATTAAAAAGAAT
* * *
1836861 TAAAAGAAATAAAATTAAAAATAAT
1 TAAAAAAAAAAAAATTAAAAAGAAT
1836886 TAAAA
1 TAAAA
1836891 GAAGGAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.22
Consensus pattern (25 bp):
TAAAAAAAAAAAAATTAAAAAGAAT
Found at i:1836873 original size:34 final size:33
Alignment explanation
Indices: 1836835--1836965 Score: 115
Period size: 33 Copynumber: 3.9 Consensus size: 33
1836825 TAAAATAAAG
1836835 ATAAAATAAAAAAAAATTAAAAGAATTAAAAGAA
1 ATAAAATAAAAAAAAATTAAAA-AATTAAAAGAA
* * **
1836869 ATAAAATTAAAAATAATTAAAAGAA-GGAAAGAA
1 ATAAAATAAAAAAAAATTAAAA-AATTAAAAGAA
* * * *
1836902 ATAAAATAGAATAGAATTAAAAAATTTAAAGAA
1 ATAAAATAAAAAAAAATTAAAAAATTAAAAGAA
* *
1836935 A-AAAAGAAACAAAATAA-TAAAAAAATAAAAG
1 ATAAAATAAA-AAAA-AATTAAAAAATTAAAAG
1836966 TGAAAAAACA
Statistics
Matches: 78, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
32 8 0.10
33 45 0.58
34 25 0.32
ACGTcount: A:0.73, C:0.01, G:0.08, T:0.18
Consensus pattern (33 bp):
ATAAAATAAAAAAAAATTAAAAAATTAAAAGAA
Found at i:1836891 original size:25 final size:24
Alignment explanation
Indices: 1836847--1836893 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
1836837 AAAATAAAAA
1836847 AAAATTAAAAGAATTAAAAGAAAT
1 AAAATTAAAAGAATTAAAAGAAAT
*
1836871 AAAATTAAAAATAATTAAAAGAA
1 AAAATT-AAAAGAATTAAAAGAA
1836894 GGAAAGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.21
Consensus pattern (24 bp):
AAAATTAAAAGAATTAAAAGAAAT
Found at i:1838159 original size:11 final size:10
Alignment explanation
Indices: 1838131--1838163 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
1838121 GTTAATAAAA
1838131 ATAATAATA-
1 ATAATAATAT
1838140 ATAATAATAT
1 ATAATAATAT
1838150 ATACATAATAT
1 ATA-ATAATAT
1838161 ATA
1 ATA
1838164 TACGTATGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.41
10 3 0.14
11 10 0.45
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (10 bp):
ATAATAATAT
Found at i:1838164 original size:13 final size:14
Alignment explanation
Indices: 1838130--1838166 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
1838120 AGTTAATAAA
1838130 AATAATA-ATA-AT
1 AATAATATATACAT
1838142 AATAATATATACAT
1 AATAATATATACAT
1838156 AAT-ATATATAC
1 AATAATATATAC
1838167 GTATGCTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.30
13 11 0.48
14 5 0.22
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.35
Consensus pattern (14 bp):
AATAATATATACAT
Found at i:1842684 original size:20 final size:20
Alignment explanation
Indices: 1842646--1842684 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
1842636 ACATGGAAAC
*
1842646 TAATATTATAATAATAATAA
1 TAATATTATAATAAAAATAA
1842666 TAATATT-TAATGAAAAATA
1 TAATATTATAAT-AAAAATA
1842685 GGTATCTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
TAATATTATAATAAAAATAA
Found at i:1848054 original size:21 final size:19
Alignment explanation
Indices: 1848026--1848071 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
1848016 TCATTAAATC
1848026 ATTA-TTCTTAGCTCCTTAAT
1 ATTAGTTCTTAGCT--TTAAT
1848046 ATTAGTTCTTAGCTTTAAT
1 ATTAGTTCTTAGCTTTAAT
1848065 ACTTAGT
1 A-TTAGT
1848072 AGGATTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 9 0.38
21 9 0.38
ACGTcount: A:0.26, C:0.15, G:0.09, T:0.50
Consensus pattern (19 bp):
ATTAGTTCTTAGCTTTAAT
Found at i:1850534 original size:2 final size:2
Alignment explanation
Indices: 1850527--1850561 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1850517 GTTAATTCTT
1850527 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1850562 TGAGAACCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1852910 original size:60 final size:60
Alignment explanation
Indices: 1852816--1852930 Score: 162
Period size: 60 Copynumber: 1.9 Consensus size: 60
1852806 TAATTGGATG
*
1852816 AATTTGGGGATGAAATTGAAAGATCTAAATGTTTAGGGACTAATTTAGAATGAGATTTAT
1 AATTTGGGGATGAAATTGAAAGATCTAAATGTTTAAGGACTAATTTAGAATGAGATTTAT
* * *
1852876 AATTTGGGGATGAAATTTGAATGTTC-ACAA-GTTTAAGGACTAATTTAGACTGAGA
1 AATTTGGGGATGAAA-TTGAAAGATCTA-AATGTTTAAGGACTAATTTAGAATGAGA
1852931 GTCATAGTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
60 39 0.80
61 10 0.20
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.34
Consensus pattern (60 bp):
AATTTGGGGATGAAATTGAAAGATCTAAATGTTTAAGGACTAATTTAGAATGAGATTTAT
Found at i:1853931 original size:22 final size:22
Alignment explanation
Indices: 1853882--1853931 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
1853872 TATGTTTCAA
* *
1853882 TTATAATTTAAATTATATATAT
1 TTATAATATAAATAATATATAT
*
1853904 TGATAATAT-AATAATATATCAT
1 TTATAATATAAATAATATAT-AT
1853926 TTATAA
1 TTATAA
1853932 ATATTTAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTATAATATAAATAATATATAT
Found at i:1854701 original size:21 final size:22
Alignment explanation
Indices: 1854659--1854702 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
1854649 ATAAATTTAA
* *
1854659 TGTATAATAATAAATAATATAT
1 TGTATAATAATAAACAACATAT
*
1854681 TGTA-AATAATATACAACATAT
1 TGTATAATAATAAACAACATAT
1854702 T
1 T
1854703 TATTTTTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (22 bp):
TGTATAATAATAAACAACATAT
Found at i:1855332 original size:22 final size:22
Alignment explanation
Indices: 1855304--1855353 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 22
1855294 AAGCTTAAAA
* *
1855304 TATTTTTTTCATATCATATTTTT
1 TATTTTTATCATATAATA-TTTT
1855327 TATTTTTATCATATAATATTTT
1 TATTTTTATCATATAATATTTT
1855349 TATTT
1 TATTT
1855354 AAAAATGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (22 bp):
TATTTTTATCATATAATATTTT
Found at i:1855536 original size:23 final size:20
Alignment explanation
Indices: 1855496--1855543 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
1855486 AAATATGATG
*
1855496 TATATTATTTACAGTATAATGT
1 TATATCATTTACAGTAT-AT-T
*
1855518 TATATCATTATACATTATATT
1 TATATCATT-TACAGTATATT
1855539 TATAT
1 TATAT
1855544 GTTGAGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 6 0.26
22 10 0.43
23 7 0.30
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (20 bp):
TATATCATTTACAGTATATT
Found at i:1855958 original size:10 final size:10
Alignment explanation
Indices: 1855943--1855972 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
1855933 AAATTATAAT
1855943 TGAAATTGAA
1 TGAAATTGAA
1855953 TGAAATTGAA
1 TGAAATTGAA
1855963 TGAAATTGAA
1 TGAAATTGAA
1855973 CACAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (10 bp):
TGAAATTGAA
Found at i:1861653 original size:30 final size:29
Alignment explanation
Indices: 1861592--1861801 Score: 231
Period size: 30 Copynumber: 7.1 Consensus size: 29
1861582 GATGCATTTT
* *
1861592 TGACATATGCATGGGATAAACTCCCGCTC
1 TGACATATGCATGGGATAAATTCCCGTTC
* *
1861621 TGACATCTGTATGGGATAAATTTCCCGTTC
1 TGACATATGCATGGGATAAA-TTCCCGTTC
*
1861651 TGACATATGCATGGGATAAAATTCTCGTTC
1 TGACATATGCATGGGAT-AAATTCCCGTTC
* * *
1861681 TTACATCTGTATGGGATAAACTTCCCGTTC
1 TGACATATGCATGGGATAAA-TTCCCGTTC
* * *
1861711 TGACATCTGTAGGGGATAAATTCCTCGTTC
1 TGACATATGCATGGGATAAATTCC-CGTTC
* *
1861741 TGACATATACATGGGATAAACTCCCTGTTC
1 TGACATATGCATGGGATAAATTCCC-GTTC
* * *
1861771 TGACATATGCATGGGATTATTTCCCATTC
1 TGACATATGCATGGGATAAATTCCCGTTC
1861800 TG
1 TG
1861802 TTTCACTTGG
Statistics
Matches: 153, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
29 31 0.20
30 119 0.78
31 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (29 bp):
TGACATATGCATGGGATAAATTCCCGTTC
Found at i:1861706 original size:60 final size:59
Alignment explanation
Indices: 1861592--1861787 Score: 259
Period size: 60 Copynumber: 3.3 Consensus size: 59
1861582 GATGCATTTT
* * * *
1861592 TGACATATGCATGGGATAAACTCCCGCTCTGACATCTGTATGGGATAAATTTCCCGTTC
1 TGACATATGCATGGGATAAATTCTCGTTCTGACATCTGTATGGGATAAACTTCCCGTTC
*
1861651 TGACATATGCATGGGATAAAATTCTCGTTCTTACATCTGTATGGGATAAACTTCCCGTTC
1 TGACATATGCATGGGAT-AAATTCTCGTTCTGACATCTGTATGGGATAAACTTCCCGTTC
* * * * **
1861711 TGACATCTGTAGGGGATAAATTCCTCGTTCTGACATATACATGGGATAAAC-TCCCTGTTC
1 TGACATATGCATGGGATAAATT-CTCGTTCTGACATCTGTATGGGATAAACTTCCC-GTTC
1861771 TGACATATGCATGGGAT
1 TGACATATGCATGGGAT
1861788 TATTTCCCAT
Statistics
Matches: 119, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
59 26 0.22
60 93 0.78
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (59 bp):
TGACATATGCATGGGATAAATTCTCGTTCTGACATCTGTATGGGATAAACTTCCCGTTC
Found at i:1861771 original size:90 final size:89
Alignment explanation
Indices: 1861592--1861787 Score: 279
Period size: 90 Copynumber: 2.2 Consensus size: 89
1861582 GATGCATTTT
*
1861592 TGACATATGCATGGGATAAACTCCCGCTCTGACATCTGTATGGGATAAATTTCCCGTTCTGACAT
1 TGACATATGCATGGGATAAACTCCCGCTCTGACATCTGTAGGGGATAAATTTCCCGTTCTGACAT
* *
1861657 ATGCATGGGATAAAATTCTCGTTC
66 ATACATGGGATAAAATCCTCGTTC
* * * *
1861681 TTACATCTGTATGGGATAAACTTCCCGTTCTGACATCTGTAGGGGATAAA-TTCCTCGTTCTGAC
1 TGACATATGCATGGGATAAAC-TCCCGCTCTGACATCTGTAGGGGATAAATTTCC-CGTTCTGAC
*
1861745 ATATACATGGGATAAACTCC-CTGTTC
64 ATATACATGGGATAAAATCCTC-GTTC
1861771 TGACATATGCATGGGAT
1 TGACATATGCATGGGAT
1861788 TATTTCCCAT
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
89 23 0.25
90 70 0.75
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (89 bp):
TGACATATGCATGGGATAAACTCCCGCTCTGACATCTGTAGGGGATAAATTTCCCGTTCTGACAT
ATACATGGGATAAAATCCTCGTTC
Found at i:1865535 original size:30 final size:30
Alignment explanation
Indices: 1865494--1865590 Score: 158
Period size: 30 Copynumber: 3.2 Consensus size: 30
1865484 ATTGATGCAT
*
1865494 TTCTGACATATGCATGGGATAAACTCCCCG
1 TTCTAACATATGCATGGGATAAACTCCCCG
1865524 TTCTAACATATGCATGGGATAAACTCCCCG
1 TTCTAACATATGCATGGGATAAACTCCCCG
* * *
1865554 TTCTGACATCTGCATGGGATAAACTCCCAG
1 TTCTAACATATGCATGGGATAAACTCCCCG
1865584 TTCTAAC
1 TTCTAAC
1865591 TTCTACATGG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (30 bp):
TTCTAACATATGCATGGGATAAACTCCCCG
Found at i:1865600 original size:30 final size:30
Alignment explanation
Indices: 1865494--1865603 Score: 157
Period size: 30 Copynumber: 3.7 Consensus size: 30
1865484 ATTGATGCAT
* *
1865494 TTCTGACATATGCATGGGATAAACTCCCCG
1 TTCTAACATCTGCATGGGATAAACTCCCCG
*
1865524 TTCTAACATATGCATGGGATAAACTCCCCG
1 TTCTAACATCTGCATGGGATAAACTCCCCG
* *
1865554 TTCTGACATCTGCATGGGATAAACTCCCAG
1 TTCTAACATCTGCATGGGATAAACTCCCCG
* *
1865584 TTCTAACTTCTACATGGGAT
1 TTCTAACATCTGCATGGGAT
1865604 TATATCCCCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 73 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (30 bp):
TTCTAACATCTGCATGGGATAAACTCCCCG
Found at i:1865685 original size:49 final size:48
Alignment explanation
Indices: 1865615--1865748 Score: 189
Period size: 49 Copynumber: 2.8 Consensus size: 48
1865605 ATATCCCCGT
* *
1865615 TTTATTTT-TGTTAGGATCCTCTATGGAGGGCTAAATTACCATTTTAA
1 TTTATTTTATGTTGGGATCCTCTATGGAGGGCTAAATTACCATTCTAA
1865662 TTTATGTTTATGTTGGGATCCTCTATGGAGGGCTAAATTACCATTCTAA
1 TTTAT-TTTATGTTGGGATCCTCTATGGAGGGCTAAATTACCATTCTAA
* * * *
1865711 TTTACATTTATGTTGGGATCCTTTACGAAGGGCTAAAT
1 TTTA-TTTTATGTTGGGATCCTCTATGGAGGGCTAAAT
1865749 CCCCAGTATG
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
47 5 0.06
48 3 0.04
49 70 0.90
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.42
Consensus pattern (48 bp):
TTTATTTTATGTTGGGATCCTCTATGGAGGGCTAAATTACCATTCTAA
Found at i:1869127 original size:17 final size:17
Alignment explanation
Indices: 1869101--1869141 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
1869091 TTGAACCGAT
*
1869101 TAGCTGCTGGACTGAAC
1 TAGCTACTGGACTGAAC
1869118 TAGCTACTGGACTGAAC
1 TAGCTACTGGACTGAAC
1869135 TAGCTAC
1 TAGCTAC
1869142 ACCGGTCACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (17 bp):
TAGCTACTGGACTGAAC
Found at i:1869793 original size:30 final size:30
Alignment explanation
Indices: 1869751--1870091 Score: 423
Period size: 30 Copynumber: 11.4 Consensus size: 30
1869741 ATGTATTTTA
*
1869751 GACATCTGCATGGGATAAACTCCTCGTTCT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
* * * **
1869781 AACATTTGCATGGGATAAATTCCCTATTCT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
* * *
1869811 GACTTCTGCATGGGATAAACTCCCTGTTGT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
* * *
1869841 GACAGCTGCATGGGATAAACTCTCTGTTCT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
* * *
1869871 AACATTTGCATGGGATAAACTCCCCATTCT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
* *
1869901 GACATATGCATGGGATAAACTCCCTGTTCT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
* *
1869931 GATATCTGTATGGGATAAACTCCCCGTTCT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
*
1869961 GACATCTGCATAGGATAAACTCCCCGTTCT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
* *
1869991 GACATCTGCTTGGGATAAACTCCCCTTTCT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
*
1870021 GACATCTGCATGGGATAAATTCCCTC-TTCT
1 GACATCTGCATGGGATAAACTCCC-CGTTCT
* * *
1870051 GACATCTGCATGGGATAAACTACTCTTTCT
1 GACATCTGCATGGGATAAACTCCCCGTTCT
*
1870081 GATATCTGCAT
1 GACATCTGCAT
1870092 AAGATTATAT
Statistics
Matches: 267, Mismatches: 42, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
29 1 0.00
30 265 0.99
31 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (30 bp):
GACATCTGCATGGGATAAACTCCCCGTTCT
Found at i:1871512 original size:19 final size:20
Alignment explanation
Indices: 1871483--1871520 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
1871473 TCAAAGTTGA
1871483 AAATGATTTGATTTTGAAAG
1 AAATGATTTGATTTTGAAAG
1871503 AAAT-ATTTGATTTTGAAA
1 AAATGATTTGATTTTGAAA
1871521 AACAAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (20 bp):
AAATGATTTGATTTTGAAAG
Found at i:1876122 original size:68 final size:68
Alignment explanation
Indices: 1876013--1876150 Score: 249
Period size: 68 Copynumber: 2.0 Consensus size: 68
1876003 TTAAGGTGCG
1876013 ATTGGGACACCATAAAAACGGGTGATTTTAATAAATATAAATTAAATTGATAAAAGCCTTCCAAT
1 ATTGGGACACCATAAAAACGGGTGATTTTAATAAATATAAATTAAATTGATAAAAGCCTTCCAAT
1876078 GAT
66 GAT
* * *
1876081 ATTGGGACACCATAAAAATGGGTTATTTTAATAAATATAAATTAATTTGATAAAAGCCTTCCAAT
1 ATTGGGACACCATAAAAACGGGTGATTTTAATAAATATAAATTAAATTGATAAAAGCCTTCCAAT
1876146 GAT
66 GAT
1876149 AT
1 AT
1876151 CGCGACACGT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (68 bp):
ATTGGGACACCATAAAAACGGGTGATTTTAATAAATATAAATTAAATTGATAAAAGCCTTCCAAT
GAT
Found at i:1876780 original size:3 final size:3
Alignment explanation
Indices: 1876772--1876836 Score: 94
Period size: 3 Copynumber: 20.7 Consensus size: 3
1876762 CAGGTCTTTT
1876772 TTA TTA TTA TTA TTTA TATA TTTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA -TTA T-TA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
1876820 TTA TTA TCA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
1876837 TAATTTACAT
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
3 49 0.86
4 7 0.12
5 1 0.02
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:1878342 original size:29 final size:29
Alignment explanation
Indices: 1878296--1878385 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 29
1878286 GCCCTTTAAG
*
1878296 TTTCTGTTTTTCCATTTTAGTCCTCTAAC
1 TTTCTGTTTTACCATTTTAGTCCTCTAAC
* * * * **
1878325 TTTCTGTTTTAGCTTTTTAGTTCTTTATG
1 TTTCTGTTTTACCATTTTAGTCCTCTAAC
** * *
1878354 TTTCTGTTTTATTATTTTGGTCCTGTAAC
1 TTTCTGTTTTACCATTTTAGTCCTCTAAC
1878383 TTT
1 TTT
1878386 TTTATTTATT
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (29 bp):
TTTCTGTTTTACCATTTTAGTCCTCTAAC
Found at i:1882456 original size:12 final size:11
Alignment explanation
Indices: 1882434--1882461 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
1882424 AACCAAAGAG
1882434 AAAAGAAAAAA
1 AAAAGAAAAAA
1882445 AAAAGAAAAAA
1 AAAAGAAAAAA
1882456 AAAAGA
1 AAAAGA
1882462 GCAAAGAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAA
Found at i:1882496 original size:11 final size:11
Alignment explanation
Indices: 1882468--1882508 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
1882458 AAGAGCAAAG
1882468 AGAAAAATCAA
1 AGAAAAATCAA
1882479 AGCAAAAATCAA
1 AG-AAAAATCAA
* *
1882491 AGAAAAAGCGA
1 AGAAAAATCAA
1882502 AGAAAAA
1 AGAAAAA
1882509 AGAGGATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.71, C:0.10, G:0.15, T:0.05
Consensus pattern (11 bp):
AGAAAAATCAA
Found at i:1883665 original size:4 final size:4
Alignment explanation
Indices: 1883656--1883773 Score: 179
Period size: 4 Copynumber: 30.2 Consensus size: 4
1883646 GATCGAGAAA
* * *
1883656 ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT ATAT ACAT ATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
1883704 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1883752 AC-- ACAT ACAT ACAT A-AT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
1883774 AAATTTGCAT
Statistics
Matches: 103, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
2 2 0.02
3 3 0.03
4 98 0.95
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (4 bp):
ACAT
Found at i:1884161 original size:35 final size:36
Alignment explanation
Indices: 1884115--1884211 Score: 133
Period size: 35 Copynumber: 2.7 Consensus size: 36
1884105 TTTCTTTGGT
* *
1884115 AAAACAAATTTTGTCTCGCTTAAGACAGTTT-TCTA
1 AAAACAAATTTTGTCTCGCTTGAGACAATTTCTCTA
* * *
1884150 AAAACAAATTTTGTCTCGCTTGAGATAATTTCTTTC
1 AAAACAAATTTTGTCTCGCTTGAGACAATTTCTCTA
*
1884186 AAAACAAATTTCGTCTCGCTTGAGAC
1 AAAACAAATTTTGTCTCGCTTGAGAC
1884212 CTTTTCCCTT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
35 28 0.52
36 26 0.48
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (36 bp):
AAAACAAATTTTGTCTCGCTTGAGACAATTTCTCTA
Found at i:1884370 original size:105 final size:104
Alignment explanation
Indices: 1884178--1884485 Score: 368
Period size: 105 Copynumber: 2.9 Consensus size: 104
1884168 CTTGAGATAA
* * * * *
1884178 TTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACCTTTTCCCTTGGATATACAAATTTCGAATTT
1 TTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACATTTTTCCTTTGAGATACAAATTTCAAATTT
* * * *
1884243 GTTTCACATTAAGCAAAGTTAATATCACTTGAGATTGTTG
66 G-TTCATATGAAACAAAATTAATATCACTTGAGATTGTTG
* * * *
1884283 TTTCTTTTAAAACAAACTTCGTCTCGCTTGAGATATTTTTCCTTTAAGATACAAATTTCAAATTT
1 TTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACATTTTTCCTTTGAGATACAAATTTCAAATTT
*
1884348 GCTTCATATGAAACAAAATTAATCTCACTTGAGATTGTTG
66 G-TTCATATGAAACAAAATTAATATCACTTGAGATTGTTG
* * * * * *
1884388 CTTATTTCGAAACAAATTTCGTTTCGCTTGAGACATTTTTTTCTCTGAGATACAAATTT-AAATT
1 TTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACA-TTTTTCCTTTGAGATACAAATTTCAAATT
*
1884452 TGTT-GTACTTGAAACAAAATTAATATCACTTGAG
65 TGTTCATA--TGAAACAAAATTAATATCACTTGAG
1884486 TTTTTCAAAA
Statistics
Matches: 173, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
103 2 0.01
104 2 0.01
105 149 0.86
106 20 0.12
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (104 bp):
TTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACATTTTTCCTTTGAGATACAAATTTCAAATTT
GTTCATATGAAACAAAATTAATATCACTTGAGATTGTTG
Found at i:1884667 original size:14 final size:15
Alignment explanation
Indices: 1884642--1884675 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
1884632 GAGATAAATC
1884642 TTTGAGTCTGTTCCT
1 TTTGAGTCTGTTCCT
*
1884657 TTTGAGT-TGTTTCT
1 TTTGAGTCTGTTCCT
1884671 TTTGA
1 TTTGA
1884676 AACAAATATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.59
Consensus pattern (15 bp):
TTTGAGTCTGTTCCT
Found at i:1884809 original size:61 final size:62
Alignment explanation
Indices: 1884683--1884829 Score: 226
Period size: 61 Copynumber: 2.4 Consensus size: 62
1884673 TGAAACAAAT
* * *
1884683 ATCTTTGAGTCTATTTCTGTTAAAACAAAGTTTTGTCTCTCTTGAGACAATTTCGTAAAAAA
1 ATCTTTGAGTCTATTTCTTTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTCCGTAAAAAA
* *
1884745 ATCTTTGAGTCTATTTATTTTGAAACAAAG-TTTGTCTCTCTTGAGACAATTCCGTGAAAAA
1 ATCTTTGAGTCTATTTCTTTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTCCGTAAAAAA
*
1884806 ATCTTTGAGT-TGTTTCTTTTGAAA
1 ATCTTTGAGTCTATTTCTTTTGAAA
1884830 AAAAATCTTT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
60 12 0.15
61 39 0.50
62 27 0.35
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (62 bp):
ATCTTTGAGTCTATTTCTTTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTCCGTAAAAAA
Found at i:1884838 original size:28 final size:29
Alignment explanation
Indices: 1884801--1884868 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
1884791 CAATTCCGTG
*
1884801 AAAAAATCTTTGAGT-TGTTTCTTTTGAA
1 AAAAAATCTTTGAGTCTGTTTCTTTGGAA
1884829 AAAAAATCTTTGAGTCTGTTTCTTTGGAA
1 AAAAAATCTTTGAGTCTGTTTCTTTGGAA
*
1884858 ACAAAAT-TTTG
1 AAAAAATCTTTG
1884869 TCTCTCTTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (29 bp):
AAAAAATCTTTGAGTCTGTTTCTTTGGAA
Found at i:1884897 original size:151 final size:154
Alignment explanation
Indices: 1884657--1884944 Score: 413
Period size: 151 Copynumber: 1.9 Consensus size: 154
1884647 GTCTGTTCCT
* *
1884657 TTTGAGTTGTTTCTTTTGAAACAAATATCTTTGAGTCTATTTCTGTTAAAACAAAGTTTTGTCTC
1 TTTGAGTTGTTTCTTTTGAAACAAAAATCTTTGAGTCTATTTCTGTTAAAACAAAATTTTGTCTC
* **
1884722 TCTTGAGACAATTTCGT-AAAAAA-ATCTTTGAGTCTATTTATTTTGAAACAAAGTTTGTCTCTC
66 TCTTGAGACAATTTCGTAAAAAAACATCTTTGAGTATATTTATTTAAAAACAAAGTTTGTCTCTC
1884785 TTGAGACAATTCCGTGAAAAAATC
131 TTGAGACAATTCCGTGAAAAAATC
* *
1884809 TTTGAGTTGTTTCTTTTGAAA-AAAAATCTTTGAGTCTGTTTCT-TTGGAAACAAAATTTTGTCT
1 TTTGAGTTGTTTCTTTTGAAACAAAAATCTTTGAGTCTATTTCTGTT-AAAACAAAATTTTGTCT
* ** * * *
1884872 CTCTTGAGACAATTTCTTTTGAAAATCATCTTTGAGTATATTTCTTTAAAAACAAATTTTGTCTC
65 CTCTTGAGACAATTTC-GTAAAAAAACATCTTTGAGTATATTTATTTAAAAACAAAGTTTGTCTC
1884937 TCTTGAGA
129 TCTTGAGA
1884945 TAGTTTCTAA
Statistics
Matches: 120, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
150 2 0.02
151 51 0.43
152 22 0.18
153 4 0.03
154 41 0.34
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (154 bp):
TTTGAGTTGTTTCTTTTGAAACAAAAATCTTTGAGTCTATTTCTGTTAAAACAAAATTTTGTCTC
TCTTGAGACAATTTCGTAAAAAAACATCTTTGAGTATATTTATTTAAAAACAAAGTTTGTCTCTC
TTGAGACAATTCCGTGAAAAAATC
Found at i:1884923 original size:90 final size:87
Alignment explanation
Indices: 1884738--1884932 Score: 230
Period size: 89 Copynumber: 2.2 Consensus size: 87
1884728 GACAATTTCG
*
1884738 TAAAAAAATCTTTGAGTCTATTTATTTTGAAACAAAGTTTGTCTCTCTTGAGACAATTCCGTGAA
1 TAAAAAAATCTTTGAGTCTATTTATTTGGAAACAAAGTTTGTCTCTCTTGAGACAATTCCGTGAA
*
1884803 AAAATCTTTGAGTTGTTTCTTT
66 AAAATCTTTGAGTTATTTCTTT
* * * *
1884825 TGAAAAAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTGAGACAATTTCTT
1 T--AAAAAAATCTTTGAGTCTATTTATTTGGAAAC-AAAGTTTGTCTCTCTTGAGACAA-TTC-C
* *
1884890 TTGAAAATCATCTTTGAGTATATTTCTTT
61 GTGAAAA-AATCTTTGAGT-TATTTCTTT
*
1884919 AAAAACAAAT-TTTG
1 TAAAA-AAATCTTTG
1884933 TCTCTCTTGA
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
87 1 0.01
89 29 0.32
90 22 0.24
91 3 0.03
92 14 0.15
93 14 0.15
94 8 0.09
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (87 bp):
TAAAAAAATCTTTGAGTCTATTTATTTGGAAACAAAGTTTGTCTCTCTTGAGACAATTCCGTGAA
AAAATCTTTGAGTTATTTCTTT
Found at i:1884952 original size:64 final size:66
Alignment explanation
Indices: 1884817--1884952 Score: 186
Period size: 64 Copynumber: 2.1 Consensus size: 66
1884807 TCTTTGAGTT
* * **
1884817 GTTTCTTTTGAAAAAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTGAGAC
1 GTTTCTTTTGAAAAAAAATCTTTGAGTATATTTCTTTAAAAACAAAATTTTGTCTCTCTTGAGAC
1884882 A
66 A
* ** *
1884883 ATTTCTTTTG-AAAATCATCTTTGAGTATATTTCTTTAAAAAC-AAATTTTGTCTCTCTTGAGAT
1 GTTTCTTTTGAAAAAAAATCTTTGAGTATATTTCTTTAAAAACAAAATTTTGTCTCTCTTGAGAC
1884946 A
66 A
1884947 GTTTCT
1 GTTTCT
1884953 AATAAAAAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
64 26 0.43
65 26 0.43
66 9 0.15
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.46
Consensus pattern (66 bp):
GTTTCTTTTGAAAAAAAATCTTTGAGTATATTTCTTTAAAAACAAAATTTTGTCTCTCTTGAGAC
A
Found at i:1884991 original size:66 final size:64
Alignment explanation
Indices: 1884827--1885011 Score: 187
Period size: 66 Copynumber: 2.9 Consensus size: 64
1884817 GTTTCTTTTG
* * *
1884827 AAAAAA-AATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTGAGACAATTTCTTT
1 AAAAAATAATCTTTGAGTATGTTTCTTTAGAAAC-AAATTTTGTCTCTCTTGAGACAATTTCTTA
** * * * * *
1884891 TGAAAATCATCTTTGAGTATATTTCTTTAAAAACAAATTTTGTCTCTCTTGAGATAGTTTCTAAT
1 AAAAAATAATCTTTGAGTATGTTTCTTTAGAAACAAATTTTGTCTCTCTTGAGACAATTTCT--T
1884956 A
64 A
* * *
1884957 AAAAAATAACCTTTGAG-ATTGTTTTCTTT-GAAACAAATTTTGTCTCACTTAAGAC
1 AAAAAATAATCTTTGAGTA-TG-TTTCTTTAGAAACAAATTTTGTCTCTCTTGAGAC
1885012 GTAATCCATC
Statistics
Matches: 97, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
64 30 0.31
65 23 0.24
66 37 0.38
67 7 0.07
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.42
Consensus pattern (64 bp):
AAAAAATAATCTTTGAGTATGTTTCTTTAGAAACAAATTTTGTCTCTCTTGAGACAATTTCTTA
Found at i:1885188 original size:32 final size:32
Alignment explanation
Indices: 1885152--1885233 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 32
1885142 GAAATACAAA
* *
1885152 ATCTTTAAGTTTGTTTCTCTTAAAATAAAGCT-
1 ATCTTTGAGTTTGTTTCTCTTAAAA-AAAGATC
* *
1885184 ATCTTTGAG-TCGTTTTCTCTTAAAACAAGATC
1 ATCTTTGAGTTTG-TTTCTCTTAAAAAAAGATC
1885216 ATCTTTGAGTTTGTTTCT
1 ATCTTTGAGTTTGTTTCT
1885234 ATGGAAACAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
31 6 0.14
32 34 0.81
33 2 0.05
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.48
Consensus pattern (32 bp):
ATCTTTGAGTTTGTTTCTCTTAAAAAAAGATC
Found at i:1885371 original size:35 final size:35
Alignment explanation
Indices: 1885279--1885374 Score: 90
Period size: 35 Copynumber: 2.7 Consensus size: 35
1885269 TTTGGAAAAA
* ***
1885279 ATCTTTGAGTTTGTTTCT-TTGGAAACAAAATTTACT
1 ATCTTTGAG-TCGTTTCTCTT-GAAACAAAACAAACT
*
1885315 ATCTTTGAGTC-TGTTCCCTTGAAACAAAACAAAC-
1 ATCTTTGAGTCGT-TTCTCTTGAAACAAAACAAACT
1885349 ATCTTTGAGATCGTTTCTCTTGAAAC
1 ATCTTTGAG-TCGTTTCTCTTGAAAC
1885375 GAATTTTGTC
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
34 10 0.20
35 28 0.56
36 12 0.24
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (35 bp):
ATCTTTGAGTCGTTTCTCTTGAAACAAAACAAACT
Found at i:1885687 original size:28 final size:28
Alignment explanation
Indices: 1885637--1885690 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
1885627 TCAAAATCCA
* * *
1885637 ATCTTTGAGTTTGTTTCTATTGAAACAC
1 ATCTTTGAGTTGGTCTCCATTGAAACAC
*
1885665 ATCTTTGAGTTGGTCTCCCTTGAAAC
1 ATCTTTGAGTTGGTCTCCATTGAAAC
1885691 CATTATCCCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.43
Consensus pattern (28 bp):
ATCTTTGAGTTGGTCTCCATTGAAACAC
Found at i:1885985 original size:43 final size:44
Alignment explanation
Indices: 1885770--1885992 Score: 160
Period size: 43 Copynumber: 5.2 Consensus size: 44
1885760 CCAGCCGTCC
* *
1885770 TCATCACGTAGGAACCGTGTCATCCC-T---CGACCAGACCTCC
1 TCATCACGTAGGAACCGTGTCATCCCTTAGACGACCAGAACTCT
* * ** * * *
1885810 TCATCACGTAGGAGCTGTGTCA-CCCTTAGATAACCAGTAGTCC
1 TCATCACGTAGGAACCGTGTCATCCCTTAGACGACCAGAACTCT
* * *
1885853 TCATCACGTAGGAACCGTGTTATCACCTTGAGATGGCCAAGAACTCT
1 TCATCACGTAGGAACCGTGTCATC-CCTT-AGACGACC-AGAACTCT
* * *** **
1885900 TCATCATGTATGAGTAGTGTCATCCC-T---CGACCAGATGTCT
1 TCATCACGTAGGAACCGTGTCATCCCTTAGACGACCAGAACTCT
* *
1885940 TCATCACGTAGGAATCGTGTCA-CCCTTAGACGACCCGAACTCT
1 TCATCACGTAGGAACCGTGTCATCCCTTAGACGACCAGAACTCT
1885983 TCATCACGTA
1 TCATCACGTA
1885993 TGAGCAGTGT
Statistics
Matches: 139, Mismatches: 32, Indels: 21
0.72 0.17 0.11
Matches are distributed among these distances:
39 6 0.04
40 46 0.33
41 3 0.02
43 47 0.34
44 1 0.01
45 5 0.04
46 8 0.06
47 23 0.17
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (44 bp):
TCATCACGTAGGAACCGTGTCATCCCTTAGACGACCAGAACTCT
Found at i:1886164 original size:3 final size:3
Alignment explanation
Indices: 1886156--1886212 Score: 80
Period size: 3 Copynumber: 18.7 Consensus size: 3
1886146 CGGGTCTTTT
1886156 TTA TTA TTA TTA TTTA TATA TT- TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
1886202 TCA TTA TTA TT
1 TTA TTA TTA TT
1886213 TAATTTACAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
2 2 0.04
3 41 0.84
4 6 0.12
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:1887719 original size:29 final size:29
Alignment explanation
Indices: 1887673--1887762 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 29
1887663 GCCCTTTAAG
*
1887673 TTTCTGTTTTTCCATTTTAGTCCTCTAAC
1 TTTCTGTTTTACCATTTTAGTCCTCTAAC
* * * * **
1887702 TTTCTGTTTTAGCTTTTTAGTTCTTTATG
1 TTTCTGTTTTACCATTTTAGTCCTCTAAC
** * *
1887731 TTTCTGTTTTATTATTTTGGTCCTGTAAC
1 TTTCTGTTTTACCATTTTAGTCCTCTAAC
1887760 TTT
1 TTT
1887763 TTTATTTATT
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (29 bp):
TTTCTGTTTTACCATTTTAGTCCTCTAAC
Found at i:1888845 original size:77 final size:79
Alignment explanation
Indices: 1888732--1888886 Score: 296
Period size: 77 Copynumber: 2.0 Consensus size: 79
1888722 TCAAAATCGC
1888732 CCAATTTTTCTAAAATAAAGTCGTAATCGTTTTTTTAAAATAATATTTAATTGTTTTA-C-AAAA
1 CCAATTTTTCTAAAATAAAGTCGTAATCGTTTTTTTAAAATAATATTTAATTGTTTTACCTAAAA
1888795 AATGGTTATGACAG
66 AATGGTTATGACAG
1888809 CCAATTTTTCTAAAATAAAGTCGTAATCGTTTTTTTAAAATAATATTTAATTGTTTTACCTAAAA
1 CCAATTTTTCTAAAATAAAGTCGTAATCGTTTTTTTAAAATAATATTTAATTGTTTTACCTAAAA
1888874 AATGGTTATGACA
66 AATGGTTATGACA
1888887 AGTTTCGAAT
Statistics
Matches: 76, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
77 58 0.76
78 1 0.01
79 17 0.22
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.42
Consensus pattern (79 bp):
CCAATTTTTCTAAAATAAAGTCGTAATCGTTTTTTTAAAATAATATTTAATTGTTTTACCTAAAA
AATGGTTATGACAG
Found at i:1890537 original size:16 final size:16
Alignment explanation
Indices: 1890459--1890539 Score: 53
Period size: 16 Copynumber: 5.1 Consensus size: 16
1890449 TAGGTTAAAC
1890459 TAATATTAAATTAT-T
1 TAATATTAAATTATAT
* *
1890474 T-ATATTTAATATATTT
1 TAATATTAAAT-TATAT
**
1890490 TAA-AACAAATTA-AT
1 TAATATTAAATTATAT
* *
1890504 ATATTCTTAAATTAATAT
1 -TAATATTAAATT-ATAT
1890522 TAATATTAAATTATAT
1 TAATATTAAATTATAT
1890538 TA
1 TA
1890540 GTATATTTTT
Statistics
Matches: 48, Mismatches: 11, Indels: 13
0.67 0.15 0.18
Matches are distributed among these distances:
14 9 0.19
15 8 0.17
16 17 0.35
17 12 0.25
18 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATATTAAATTATAT
Found at i:1890558 original size:59 final size:57
Alignment explanation
Indices: 1890453--1890577 Score: 162
Period size: 59 Copynumber: 2.2 Consensus size: 57
1890443 AATATTTAGG
* *
1890453 TTAAACTAATATTAAATTATTTATATTTAATATATTTTAAAACAAATTAATATATTC
1 TTAAATTAATATTAAATTAATTATATTTAATATATTTTAAAACAAATTAATATATTC
* **
1890510 TTAAATTAATATTAATATTAAATTATA-TTAGTATATTTTTAATTCAAATTAATATATTC
1 TTAAATTAATATTAA-ATT-AATTATATTTAATATA-TTTTAAAACAAATTAATATATTC
*
1890569 TCAAATTAA
1 TTAAATTAA
1890578 ACTAGTTTTG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
57 14 0.24
58 10 0.17
59 35 0.59
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.48
Consensus pattern (57 bp):
TTAAATTAATATTAAATTAATTATATTTAATATATTTTAAAACAAATTAATATATTC
Found at i:1893044 original size:30 final size:30
Alignment explanation
Indices: 1893004--1893072 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
1892994 CCGTTAATAA
* *
1893004 ATTGACATAATTATATATTTGATCTTTAAT
1 ATTGACATAATTATACATTTGATCATTAAT
* *
1893034 ATTGGCATAATTATACATTTGGTCATTAAT
1 ATTGACATAATTATACATTTGATCATTAAT
*
1893064 ATTTACATA
1 ATTGACATA
1893073 TTCTATAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.46
Consensus pattern (30 bp):
ATTGACATAATTATACATTTGATCATTAAT
Found at i:1893548 original size:67 final size:65
Alignment explanation
Indices: 1893417--1893541 Score: 146
Period size: 67 Copynumber: 1.9 Consensus size: 65
1893407 TTATTTGTTT
** *
1893417 AAATAAATTTCGGTTCGATTAATTGTTAAAGAAAAAAATCGGTTAATTCGATTTGGTTAAAATTT
1 AAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAAAT--GTTAATTCGATTCGGTTAAAATTT
1893482 TC
64 TC
* **
1893484 AAATAAATTTTGGTTCGATTAACGGTTAAAGAACAAATAAT-TT-ATTTTATTCGGTTAA
1 AAATAAATTTCGGTTCGATTAACGGTTAAAGAA-AAA-AATGTTAATTCGATTCGGTTAA
1893542 TAAATTTCGA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
65 12 0.24
66 2 0.04
67 30 0.60
68 3 0.06
69 3 0.06
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (65 bp):
AAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAAATGTTAATTCGATTCGGTTAAAATTTTC
Found at i:1893650 original size:94 final size:94
Alignment explanation
Indices: 1893540--1893752 Score: 363
Period size: 94 Copynumber: 2.3 Consensus size: 94
1893530 TTATTCGGTT
*
1893540 AATAAATTTCGATTCGATTAACGGTCAAATAATTTCGATTCGATTAATGGTTAAAGAAAAAAATC
1 AATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGGTTAAAGAAAAAAATC
* *
1893605 GGTTGATTTGGTTTGGTTAATAATTTTCA
66 GGTTAATTTGGTTCGGTTAATAATTTTCA
** * *
1893634 AATAAATTTCGGTTCGATTAATTGTCAAATAATTTTGTTTCGATTAATGGTTAAAGAAAAAAATC
1 AATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGGTTAAAGAAAAAAATC
1893699 GGTTAATTTGGTTCGGTTAATAATTTTCA
66 GGTTAATTTGGTTCGGTTAATAATTTTCA
1893728 AATAAATTTCGGTTCGATTAACGGT
1 AATAAATTTCGGTTCGATTAACGGT
1893753 TAAAAAAATA
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 110 1.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.39
Consensus pattern (94 bp):
AATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGGTTAAAGAAAAAAATC
GGTTAATTTGGTTCGGTTAATAATTTTCA
Found at i:1893675 original size:26 final size:27
Alignment explanation
Indices: 1893625--1893681 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
1893615 GTTTGGTTAA
*
1893625 TAATTTTCAAATAAATTTCGGTTCGAT
1 TAATTGTCAAATAAATTTCGGTTCGAT
* *
1893652 TAATTGTCAAAT-AATTTTGTTTCGAT
1 TAATTGTCAAATAAATTTCGGTTCGAT
1893678 TAAT
1 TAAT
1893682 GGTTAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (27 bp):
TAATTGTCAAATAAATTTCGGTTCGAT
Found at i:1893816 original size:166 final size:167
Alignment explanation
Indices: 1893620--1893919 Score: 521
Period size: 166 Copynumber: 1.8 Consensus size: 167
1893610 ATTTGGTTTG
** * *
1893620 GTTAATAATTTTCAAATAAATTTCGGTTCGATTAATTGTCAAATAATTTTGTTTCGATTAATGGT
1 GTTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATAGT
*
1893685 TAAAGAAAAAA-ATCGGTTAATTTGGTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAA
66 TAAAGAAAAAATATCGGTTAATTTAGTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAA
1893749 CGGTTAAAAAAATAACTTATTTTATTCAGTTAATTCT
131 CGGTTAAAAAAATAACTTATTTTATTCAGTTAATTCT
*
1893786 GTTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATAGT
1 GTTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATAGT
* *
1893851 TAAAGAAAAAATTTCGGTTAATTTAGTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTTA
66 TAAAGAAAAAATATCGGTTAATTTAGTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAA
1893916 CGGT
131 CGGT
1893920 CAAATAATTT
Statistics
Matches: 125, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
166 71 0.57
167 54 0.43
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (167 bp):
GTTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATAGT
TAAAGAAAAAATATCGGTTAATTTAGTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAA
CGGTTAAAAAAATAACTTATTTTATTCAGTTAATTCT
Found at i:1896025 original size:5 final size:5
Alignment explanation
Indices: 1896015--1896074 Score: 111
Period size: 5 Copynumber: 12.0 Consensus size: 5
1896005 AAAACGAAGA
*
1896015 TGATG TGATG TGATG TGATG TGATG TGATG TGATG TGATG TGATA TGATG
1 TGATG TGATG TGATG TGATG TGATG TGATG TGATG TGATG TGATG TGATG
1896065 TGATG TGATG
1 TGATG TGATG
1896075 ATTAGGTCAC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 53 1.00
ACGTcount: A:0.22, C:0.00, G:0.38, T:0.40
Consensus pattern (5 bp):
TGATG
Found at i:1897669 original size:2 final size:2
Alignment explanation
Indices: 1897662--1897698 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
1897652 TATAAACATC
* *
1897662 AG AG AG AG AG GG AG GG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1897699 AATAATACCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1900845 original size:31 final size:32
Alignment explanation
Indices: 1900799--1900859 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
1900789 TTTAATATTT
1900799 ATTTCATAATAATTTAATAAA-TTTTAATGACC
1 ATTTCATAATAATTTAA-AAAGTTTTAATGACC
*
1900831 ATTTTATAAT-ATTTAAAAAGTTTTAATGA
1 ATTTCATAATAATTTAAAAAGTTTTAATGA
1900860 ATGTTTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 3 0.11
31 15 0.56
32 9 0.33
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (32 bp):
ATTTCATAATAATTTAAAAAGTTTTAATGACC
Found at i:1900884 original size:29 final size:30
Alignment explanation
Indices: 1900799--1900884 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 30
1900789 TTTAATATTT
* *
1900799 ATTTCATAATAATTTAATAAATTTTAATGACC
1 ATTTTATAAT-ATTTAA-AAATTTTAATGAAC
*
1900831 ATTTTATAATATTTAAAAAGTTTTAATGAAT
1 ATTTTATAATATTTAAAAA-TTTTAATGAAC
*
1900862 GTTTTATAAT-TTCT-AAAATTTTA
1 ATTTTATAATATT-TAAAAATTTTA
1900885 GTGGAAAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
29 5 0.10
30 9 0.19
31 25 0.52
32 9 0.19
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.49
Consensus pattern (30 bp):
ATTTTATAATATTTAAAAATTTTAATGAAC
Found at i:1901179 original size:21 final size:20
Alignment explanation
Indices: 1901093--1901250 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
1901083 AAATGACCAA
**
1901093 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
1901112 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
1901132 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
1901152 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
1901173 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
1901194 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
1901214 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
1901235 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
1901251 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:1901266 original size:40 final size:40
Alignment explanation
Indices: 1901217--1901371 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
1901207 CGATTTTCCA
* ** *
1901217 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACAT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAACACAT
* * *
1901257 AAATCGCAACGCGTATCCGTAAATCGCAACGTGTATC-CGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCG-AACACAT
* ** *
1901297 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACAT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAACACAT
1901337 AAAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 -AAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1901372 TATTTAAAGC
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 62 0.65
41 33 0.34
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.18
Consensus pattern (40 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAACACAT
Found at i:1901279 original size:20 final size:20
Alignment explanation
Indices: 1901217--1901370 Score: 168
Period size: 20 Copynumber: 7.7 Consensus size: 20
1901207 CGATTTTCCA
* ** *
1901217 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
1901237 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
1901257 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
1901277 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
1901297 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
1901317 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
1901337 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
1901358 AAATCGCAACGCG
1 AAATCGCAACGCG
1901371 ATATTTAAAG
Statistics
Matches: 112, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
19 2 0.02
20 92 0.82
21 17 0.15
22 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.18
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:1901542 original size:22 final size:22
Alignment explanation
Indices: 1901517--1901571 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
1901507 CTCTCTACGG
*
1901517 CGAAGAAATCTGTCCCCATCTC
1 CGAAGAAATCCGTCCCCATCTC
**
1901539 CGAAGATTTCCGTCCCCATCTC
1 CGAAGAAATCCGTCCCCATCTC
**
1901561 CGGCGAAATCC
1 CGAAGAAATCC
1901572 CTCACAACCA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.24, C:0.38, G:0.16, T:0.22
Consensus pattern (22 bp):
CGAAGAAATCCGTCCCCATCTC
Found at i:1901791 original size:33 final size:33
Alignment explanation
Indices: 1901752--1901821 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
1901742 TTCACTTAGA
*
1901752 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
1901785 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1901818 TTTC
1 TTTC
1901822 GAGTTAGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.10, C:0.23, G:0.19, T:0.49
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:1901958 original size:41 final size:41
Alignment explanation
Indices: 1901900--1901977 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
1901890 TTGCAGAAGA
*
1901900 GTCGCAACGAGATAAATGAAAATCGCAACGAGAGAATGACT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
1901941 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAAT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAAT
1901978 CGCAACGCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.45, C:0.17, G:0.26, T:0.13
Consensus pattern (41 bp):
GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
Found at i:1901974 original size:21 final size:21
Alignment explanation
Indices: 1901901--1901976 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
1901891 TGCAGAAGAG
*
1901901 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
***
1901922 TCGCAACGAGAG-AATGACTG
1 TCGCAACGAGAGAAATGAAAA
1901942 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
1901963 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
1901977 TCGCAACGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.46, C:0.17, G:0.25, T:0.12
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGAAAA
Found at i:1901980 original size:14 final size:14
Alignment explanation
Indices: 1901961--1902017 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
1901951 GAGAAATGAA
1901961 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
1901975 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
1901994 AATCGCAACTAGAG
1 AATCGCAACGAGAG
1902008 AATCGCAACG
1 AATCGCAACG
1902018 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 19 0.56
15 1 0.03
16 2 0.06
17 1 0.03
18 1 0.03
19 10 0.29
ACGTcount: A:0.44, C:0.23, G:0.23, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:1901993 original size:33 final size:33
Alignment explanation
Indices: 1901953--1902033 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
1901943 CGCAACGAGA
1901953 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
1901986 GAAATGAAAATCGCAACTAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
1902019 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
1902034 TTGCGATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:1902088 original size:19 final size:18
Alignment explanation
Indices: 1902029--1902145 Score: 87
Period size: 14 Copynumber: 7.1 Consensus size: 18
1902019 GAAACCAAAA
*
1902029 TCGCATTGCGATTTTCAT
1 TCGCGTTGCGATTTTCAT
1902047 TCGCGTTGCGA--TTC--
1 TCGCGTTGCGATTTTCAT
*
1902061 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCA-T
1902080 TCGCGTTGCGA--TTC--
1 TCGCGTTGCGATTTTCAT
**
1902094 TCTAGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCA-T
1902113 TCGCGTTGCGA--TTC--
1 TCGCGTTGCGATTTTCAT
*
1902127 TCTCGTTGCGATTTTCAT
1 TCGCGTTGCGATTTTCAT
1902145 T
1 T
1902146 TCAACCAAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 28
0.68 0.07 0.25
Matches are distributed among these distances:
14 29 0.38
16 12 0.16
17 6 0.08
18 11 0.14
19 19 0.25
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.45
Consensus pattern (18 bp):
TCGCGTTGCGATTTTCAT
Found at i:1902088 original size:33 final size:33
Alignment explanation
Indices: 1902034--1902147 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
1902024 CAAAATCGCA
1902034 TTGCGATTTTCA-TTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
1902066 TTGCGATTTTCATTTCGCGTTGCGATTCTCTAG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1902099 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1902132 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
1902148 AACCAAAAGA
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
32 12 0.15
33 67 0.85
ACGTcount: A:0.11, C:0.23, G:0.20, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:1904029 original size:93 final size:93
Alignment explanation
Indices: 1903815--1904375 Score: 1083
Period size: 93 Copynumber: 6.1 Consensus size: 93
1903805 TAGATTGCTT
*
1903815 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1903880 -TTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
1903907 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1903972 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
1904000 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1904065 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
1904093 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1904158 -TTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
1904185 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1904250 TTTGTCTTTGTTTTGTCTTTTGGTTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGG-TTGAA
1904279 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1904344 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
1904371 AGTAA
1 AGTAA
1904376 TGCAATCCAT
Statistics
Matches: 465, Mismatches: 1, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
92 162 0.35
93 210 0.45
94 93 0.20
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:1904045 original size:185 final size:186
Alignment explanation
Indices: 1903815--1904375 Score: 1083
Period size: 185 Copynumber: 3.0 Consensus size: 186
1903805 TAGATTGCTT
*
1903815 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1903880 -TTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1903944 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
1904000 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1904065 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1904130 GTGTATTCTTTAACACTGTGAAATAGTA-TTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
1904185 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1904250 TTTGTCTTTGTTTTGTCTTTTGGTTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAAC
66 TTTGTCTTTGTTTTGTCTTTTGG-TTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAAC
1904315 TGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTG-A
130 TGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
1904371 AGTAA
1 AGTAA
1904376 TGCAATCCAT
Statistics
Matches: 372, Mismatches: 1, Indels: 5
0.98 0.00 0.01
Matches are distributed among these distances:
185 179 0.48
186 168 0.45
187 25 0.07
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (186 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Done.