genome.fa.s8507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008507.1 Hibiscus syriacus cultivar Beakdansim tig00111359_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68065

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
822--855	18	1.9	18	88	5	52	35	0	0	64	0.94
2085--2109	8	3.1	8	100	0	50	40	24	0	36	1.55
4013--4039	2	13.5	2	100	0	54	48	0	0	51	1.00
4252--4520	133	2.0	136	80	3	303	22	12	16	48	1.80
5657--5745	42	2.1	42	89	4	135	40	2	5	51	1.38
6942--6968	14	1.9	14	100	0	54	77	0	0	22	0.76
13323--13463	41	3.4	41	67	27	109	31	19	15	32	1.93
13323--13474	42	3.7	42	68	18	111	32	21	15	30	1.94
21550--21998	229	2.0	228	95	0	808	44	8	7	39	1.62
22060--22109	20	2.5	20	81	18	68	56	14	14	16	1.69
24585--24650	33	2.0	33	87	0	96	28	1	45	24	1.62
26442--26490	19	2.6	19	93	0	80	30	2	10	57	1.43
26639--28130	397	3.8	396	98	0	2864	35	15	16	32	1.90
26639--28130	198	7.5	199	98	0	2870	35	15	16	32	1.90
29584--29651	21	3.4	18	69	21	55	36	8	35	19	1.83
29584--29681	6	16.3	6	80	0	70	36	7	34	21	1.81
29599--29685	3	29.0	3	77	0	84	35	5	34	24	1.79
29587--29677	42	2.2	42	91	0	146	35	7	35	21	1.83
29584--29681	18	5.4	18	78	0	88	36	7	34	21	1.81
31150--31676	184	2.9	184	95	0	921	35	14	16	33	1.89
34256--34319	23	2.8	23	87	0	92	35	6	20	37	1.78
34256--34328	23	3.2	23	82	7	85	34	5	20	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34687--34750	23	2.8	23	87	0	92	35	6	20	37	1.78
34687--34759	23	3.2	23	82	7	85	34	5	20	39	1.76
34157--35843	425	3.9	431	97	1	3123	39	8	12	39	1.73
35114--35184	23	3.2	23	71	15	58	35	5	19	39	1.76
35538--35600	22	2.8	23	87	4	92	36	6	20	36	1.78
35538--35609	23	3.2	23	88	4	101	34	5	20	38	1.76
35878--35928	25	2.0	25	92	0	84	33	7	19	39	1.81
36177--36213	18	2.1	18	89	0	56	32	5	10	51	1.60
36169--36215	24	2.0	24	86	0	67	34	4	14	46	1.64
36472--36558	39	2.2	39	95	0	156	48	20	13	17	1.81
36881--36944	23	2.8	23	87	0	92	35	6	20	37	1.78
36881--36953	23	3.2	23	82	7	85	34	5	20	39	1.76
55031--55102	3	24.7	3	76	10	51	41	0	0	58	0.98
55043--55102	15	4.3	15	77	14	65	45	0	0	55	0.99
55494--55550	6	10.5	6	73	21	54	59	14	26	0	1.35
55506--55546	15	2.7	15	92	0	64	63	14	21	0	1.30
55493--55559	21	2.8	24	84	13	77	61	11	26	0	1.31
56519--56565	14	3.5	13	80	13	51	40	2	2	55	1.24
64563--64603	20	2.0	20	86	9	57	24	19	21	34	1.97
67684--67733	8	6.4	8	79	11	59	86	0	14	0	0.58
67684--67733	12	4.2	12	87	10	75	86	0	14	0	0.58
67684--67733	24	2.1	23	96	3	91	86	0	14	0	0.58

Tables:   1

The End!