Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008508.1 Hibiscus syriacus cultivar Beakdansim tig00111360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70385

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1965--2013
16
3.1
16
96
0
89
57
22
12
8
1.61
2074--2098
13
1.9
13
100
0
50
28
32
24
16
1.96
3117--3196
14
6.3
13
71
21
64
55
21
13
10
1.67
3111--3189
24
3.3
24
94
3
133
58
18
11
11
1.62
17078--17155
41
1.9
41
89
0
120
43
15
26
14
1.85
28207--28232
7
3.7
7
100
0
52
38
0
15
46
1.46
31597--31643
11
4.0
11
80
20
51
76
0
4
19
0.95
31601--31636
14
2.6
14
91
4
56
77
0
2
19
0.88
32913--32958
13
3.5
13
88
8
67
52
0
0
47
1.00
35939--35979
8
5.2
8
82
5
57
34
0
29
36
1.58
36046--36774
126
5.8
126
98
0
1399
22
25
19
32
1.98
36046--36774
251
2.9
252
98
0
1408
22
25
19
32
1.98
37158--37257
33
3.0
34
83
2
139
39
3
4
54
1.35
37776--37869
21
4.5
21
92
5
129
20
26
35
18
1.95
39638--39709
15
4.7
16
70
11
53
59
1
0
38
1.06
39640--39724
17
5.3
16
71
19
54
60
2
0
37
1.10
39635--39716
32
2.5
32
79
15
87
57
2
0
40
1.12
39670--39743
31
2.4
32
80
12
84
62
5
0
32
1.18
41547--41606
7
7.9
7
78
14
57
76
0
0
23
0.78
41550--41606
6
8.7
6
83
12
51
77
0
0
22
0.77
41550--41606
13
4.3
13
76
12
62
77
0
0
22
0.77
41553--41604
25
2.1
25
85
7
70
75
0
0
25
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41854--41904
2
25.5
2
100
0
102
49
0
0
50
1.00
42182--42343
85
1.9
86
80
5
193
33
12
11
42
1.79
46522--46563
22
1.9
22
90
0
66
40
23
2
33
1.68
47073--47097
2
12.5
2
100
0
50
48
0
0
52
1.00
56593--56626
17
2.0
17
94
0
59
58
2
5
32
1.37
59845--59925
42
1.9
42
85
5
110
23
17
12
46
1.81
62443--62485
21
2.0
21
86
8
61
25
25
11
37
1.90

Tables:   1

The End!