genome.fa.s8509.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008509.1 Hibiscus syriacus cultivar Beakdansim tig00111362_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  231169

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3306--3416	35	3.2	35	77	7	118	27	36	3	32	1.74
5276--5357	40	2.0	40	100	0	164	25	30	12	31	1.92
11303--11356	11	4.7	11	77	8	54	1	12	7	77	1.05
13831--13873	1	43.0	1	85	0	59	0	0	6	93	0.37
13822--13867	20	2.3	20	85	7	58	0	2	10	86	0.64
13833--13871	20	2.0	20	100	0	78	0	0	7	92	0.39
13831--13874	11	4.0	11	88	11	72	0	0	9	90	0.44
21208--21298	47	1.9	47	93	0	155	25	13	27	34	1.93
24515--24571	27	2.1	27	83	6	71	59	12	15	12	1.61
33674--33716	20	2.1	21	87	8	63	18	13	0	67	1.23
33673--33722	20	2.5	20	75	15	59	18	18	0	64	1.30
41091--41162	36	2.0	36	91	0	117	27	37	6	27	1.82
41113--41182	22	3.0	23	87	10	90	30	34	5	30	1.81
66452--66531	35	2.2	37	91	4	128	27	3	37	31	1.74
72134--72212	35	2.2	37	90	4	126	27	3	36	31	1.75
74033--74078	24	1.9	24	95	0	83	36	17	26	19	1.94
75192--75279	30	2.9	30	84	3	115	31	12	29	26	1.93
83810--83834	13	1.9	13	100	0	50	16	8	28	48	1.74
90281--90305	8	3.1	8	100	0	50	0	24	0	76	0.80
94683--94762	35	2.2	37	91	4	128	27	3	37	31	1.74
96715--96752	11	3.4	11	92	3	58	86	10	2	0	0.66
96715--96752	12	3.2	12	88	3	51	86	10	2	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105107--105186	35	2.2	37	86	4	110	28	5	36	30	1.78
107719--107777	14	4.6	13	74	23	54	3	16	1	77	0.98
107725--107765	21	2.0	21	85	0	55	2	17	2	78	0.98
107731--107782	18	2.8	19	83	13	65	1	19	0	78	0.84
107732--107777	23	2.1	21	92	8	74	2	17	0	80	0.81
107731--107780	21	2.4	19	81	18	64	2	20	0	78	0.86
111460--111484	13	1.9	13	100	0	50	16	8	28	48	1.74
115793--115850	20	2.9	21	75	12	59	77	3	15	3	1.04
117842--117901	30	2.0	31	83	3	77	26	8	10	55	1.61
118807--118857	20	2.6	20	90	3	77	33	17	5	43	1.73
119592--119627	13	2.8	13	84	16	56	77	0	22	0	0.76
119600--119635	18	2.0	18	100	0	72	77	0	22	0	0.76
119595--119632	13	3.0	13	85	14	53	78	0	21	0	0.74
119861--119900	12	3.2	12	85	3	53	22	5	35	37	1.76
128074--128106	17	1.9	17	100	0	66	42	0	30	27	1.56
129833--129872	19	2.0	20	90	4	64	20	15	0	65	1.28
135757--135782	5	5.2	5	100	0	52	23	57	19	0	1.40
138592--138625	16	2.2	16	89	5	52	0	20	0	79	0.73
142650--142688	20	2.0	20	90	10	62	61	5	7	25	1.44
144560--144639	35	2.2	37	91	4	128	27	3	37	31	1.74
151521--151571	18	2.8	18	80	16	61	7	13	1	76	1.09
151869--151902	16	2.2	15	89	5	50	20	2	38	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157881--157915	6	5.7	6	86	6	52	0	14	2	82	0.77
157881--157915	13	2.8	12	87	8	52	0	14	2	82	0.77
158139--158174	15	2.4	15	95	0	63	50	2	22	25	1.63
162557--162595	11	3.6	11	79	6	53	84	10	5	0	0.76
162557--162602	20	2.2	21	92	3	76	80	13	6	0	0.89
170938--170980	19	2.2	20	87	4	61	48	6	9	34	1.62
173764--173844	36	2.3	36	89	2	128	32	2	37	28	1.70
173786--173843	13	4.7	13	68	12	50	29	1	39	29	1.67
179618--180220	54	11.2	54	87	1	820	37	17	12	32	1.88
182631--182668	18	2.1	19	85	5	51	65	0	10	23	1.23
192385--192433	11	4.2	11	82	10	53	81	2	14	2	0.87
192386--192435	6	8.2	6	80	10	57	80	2	16	2	0.91
196849--196892	6	7.2	6	82	12	54	79	2	18	0	0.83
197715--197742	14	2.0	14	100	0	56	28	14	35	21	1.92
207482--207567	15	5.5	15	70	16	68	17	15	2	65	1.38
207492--207544	16	3.4	16	75	15	65	16	15	3	64	1.44
207490--207548	11	5.5	11	75	17	52	18	13	3	64	1.42
207486--207562	31	2.5	31	97	0	145	18	14	2	64	1.39
213196--213251	13	4.7	11	74	21	51	0	19	1	78	0.84
213196--213251	18	3.1	18	82	17	71	0	19	1	78	0.84
217104--217131	14	2.0	14	100	0	56	21	42	0	35	1.53
217312--217354	15	2.9	15	100	0	86	11	27	0	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225346--225395	14	3.9	13	73	21	52	78	2	20	0	0.86
225340--225395	19	3.1	18	82	17	71	78	1	19	0	0.84
225340--225395	11	4.7	11	74	21	51	78	1	19	0	0.84

Tables:   1

The End!