Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000851.1 Hibiscus syriacus cultivar Beakdansim tig00001644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7304151
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 19 of 31
Found at i:4641872 original size:14 final size:14
Alignment explanation
Indices: 4641853--4641910 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
4641843 ATGCGAAATG
4641853 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
4641867 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
*
4641883 ATGAAATCACAACGAC
1 A--AAATCGCAACGAC
4641899 AAAATCGCAACG
1 AAAATCGCAACG
4641911 CGAAACACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
14 20 0.56
16 8 0.22
18 8 0.22
ACGTcount: A:0.50, C:0.26, G:0.16, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:4641896 original size:32 final size:33
Alignment explanation
Indices: 4641837--4641915 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
4641827 GGAAATGGCT
* *
4641837 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCACAACGACAAA
4641870 ATCGCAACGCGAAATG-AAATCACAACGACAAA
1 ATCGCAACGCGAAATGAAAATCACAACGACAAA
4641902 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
4641916 CACAAATCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 29 0.66
33 15 0.34
ACGTcount: A:0.48, C:0.24, G:0.18, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCACAACGACAAA
Found at i:4641975 original size:32 final size:33
Alignment explanation
Indices: 4641927--4642017 Score: 139
Period size: 32 Copynumber: 2.8 Consensus size: 33
4641917 ACAAATCGCA
* *
4641927 TTGCAATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
* *
4641960 TTGCGA-TTTCATTTCGCTTTACGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
4641992 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
4642018 AGCCATTTCC
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
32 30 0.58
33 22 0.42
ACGTcount: A:0.13, C:0.19, G:0.20, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:4642016 original size:19 final size:17
Alignment explanation
Indices: 4641934--4642017 Score: 63
Period size: 14 Copynumber: 5.1 Consensus size: 17
4641924 GCATTGCAAT
4641934 TTTCATTTCGCGTTGCGA
1 TTTCATTTCGC-TTGCGA
*
4641952 TTT--TGTCG-TTGCGA
1 TTTCATTTCGCTTGCGA
*
4641966 TTTCATTTCGCTTTACGA
1 TTTCATTTCGC-TTGCGA
*
4641984 TTT--TGTCG-TTGCGA
1 TTTCATTTCGCTTGCGA
4641998 TTTTCATTTCGCATTGCGA
1 -TTTCATTTCGC-TTGCGA
4642017 T
1 T
4642018 AGCCATTTCC
Statistics
Matches: 51, Mismatches: 6, Indels: 18
0.68 0.08 0.24
Matches are distributed among these distances:
14 14 0.27
15 3 0.06
16 12 0.24
17 4 0.08
18 12 0.24
19 6 0.12
ACGTcount: A:0.12, C:0.19, G:0.20, T:0.49
Consensus pattern (17 bp):
TTTCATTTCGCTTGCGA
Found at i:4642036 original size:20 final size:19
Alignment explanation
Indices: 4642002--4642056 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
4641992 TTGCGATTTT
*
4642002 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
4642021 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
4642041 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
4642057 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:4642564 original size:18 final size:18
Alignment explanation
Indices: 4642538--4642582 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
4642528 GTCGATCAGA
*
4642538 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
4642556 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
4642574 TGATGGCTC
1 TGATGGCTC
4642583 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:4643925 original size:20 final size:20
Alignment explanation
Indices: 4643900--4643942 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
4643890 AATAGTTTCT
4643900 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
*
4643920 GAAAATGAAAATCGCAACGC
1 GAAAATGAAAATCGCAACAC
4643940 GAA
1 GAA
4643943 TTCGACTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:4644251 original size:22 final size:22
Alignment explanation
Indices: 4644221--4644264 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4644211 GATGGAGATA
4644221 GACGAATTTCGCCGGAGATGGG
1 GACGAATTTCGCCGGAGATGGG
* **
4644243 GACGGATTTCGTGGGAGATGGG
1 GACGAATTTCGCCGGAGATGGG
4644265 TGAGAGAGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.20, C:0.14, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGAATTTCGCCGGAGATGGG
Found at i:4644478 original size:20 final size:20
Alignment explanation
Indices: 4644452--4644565 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
4644442 GATTATGTAT
4644452 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
4644472 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
4644492 TATCGCGGTT-CGAAAGTAAG
1 TATCGC-GTTGCGAAAGTCAG
* *** * *
4644512 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
4644533 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
4644553 TATCGCATTGCGA
1 TATCGCGTTGCGA
4644566 TTTTCCCAAT
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
19 3 0.04
20 57 0.75
21 16 0.21
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:4644584 original size:21 final size:21
Alignment explanation
Indices: 4644555--4644647 Score: 91
Period size: 20 Copynumber: 4.5 Consensus size: 21
4644545 ATAGTCAGTA
4644555 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
4644576 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
*
4644596 TCGCATTGCTATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
4644617 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
4644637 TCGCATTGCGA
1 TCGCATTGCGA
4644648 ATTGGGAAAA
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:4644585 original size:41 final size:41
Alignment explanation
Indices: 4644555--4644647 Score: 141
Period size: 41 Copynumber: 2.3 Consensus size: 41
4644545 ATAGTCAGTA
* *
4644555 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
* * *
4644596 TCGCATTGCTATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
4644637 TCGCATTGCGA
1 TCGCATTGCGA
4644648 ATTGGGAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:4648507 original size:66 final size:66
Alignment explanation
Indices: 4648389--4648518 Score: 156
Period size: 66 Copynumber: 2.0 Consensus size: 66
4648379 AACCAGAGCC
* * * * * *
4648389 ACTCGAGCATCATTTGCACGACCTTGAAGCTCGAAACCAGCGTCGATACCCACATTC-ACTGGAA
1 ACTCCAGCACCATTTGCACAACCTTAAACCTCGAAACCAGCGTCGACACCCACA-TCGACTGGAA
4648453 TG
65 TG
* *
4648455 ACTCCAGCACCATTTGCACAACCTTAAACCTTGAAACCAGC-TCCGACGCCCACATCGACTGGAA
1 ACTCCAGCACCATTTGCACAACCTTAAACCTCGAAACCAGCGT-CGACACCCACATCGACTGGAA
4648519 CACCATTTGC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
65 3 0.06
66 51 0.94
ACGTcount: A:0.30, C:0.34, G:0.17, T:0.19
Consensus pattern (66 bp):
ACTCCAGCACCATTTGCACAACCTTAAACCTCGAAACCAGCGTCGACACCCACATCGACTGGAAT
G
Found at i:4648550 original size:57 final size:57
Alignment explanation
Indices: 4648462--4648999 Score: 412
Period size: 57 Copynumber: 9.5 Consensus size: 57
4648452 ATGACTCCAG
* * * * *
4648462 CACCATTTGCACAACCTTAAACCTTGAAACCAGCTCCGACGCCCACATCGACTGGAA
1 CACCATTTGCACGACCTTGAAGCTAGAAACCAGCTCCGACACCCACATCGACTGGAA
** * *
4648519 CACCATTTGCACGGTCTTGAAGAC-AGAAACCAACTCCGACACCCACATCGAC--CAA
1 CACCATTTGCACGACCTTGAAG-CTAGAAACCAGCTCCGACACCCACATCGACTGGAA
* * * * * * *
4648574 -AACAGTTACACGACCTTGTAGCTCGAAACCAGCTCTGACACCTACATCGACTGGAA
1 CACCATTTGCACGACCTTGAAGCTAGAAACCAGCTCCGACACCCACATCGACTGGAA
* * * * ** *
4648630 CACCATTTACACGACCTTGAAGATCGAAACCAACTCCGACTTCCACATCAACTGGAA
1 CACCATTTGCACGACCTTGAAGCTAGAAACCAGCTCCGACACCCACATCGACTGGAA
* * * * *
4648687 CACCATGTGCACGACCTTGAAGCTTA-AAACTAGCTCTGACACCCACATCAACCGGAA
1 CACCATTTGCACGACCTTGAAGC-TAGAAACCAGCTCCGACACCCACATCGACTGGAA
* * * * * *
4648744 CACCATTTGTACGACCTTGAAGCTCGAAACCAGCTCCGGCACCCATATCGACCGAAA
1 CACCATTTGCACGACCTTGAAGCTAGAAACCAGCTCCGACACCCACATCGACTGGAA
* * * * * *
4648801 CACCATCTGTACGACCTTGATGC-ACAAAACCAGCT-CTAGTACCCACATCGA-TCGGAA
1 CACCATTTGCACGACCTTGAAGCTA-GAAACCAGCTCCGA-CACCCACATCGACT-GGAA
** * * * * * * *
4648858 CACCATTTGCACGTTCTTGAAGCTTGAAACCAACT-CGGCATCCATATCGGCCGGAA
1 CACCATTTGCACGACCTTGAAGCTAGAAACCAGCTCCGACACCCACATCGACTGGAA
* * * ** * * *
4648914 CACCATCTGCACGACCTTGAAGATAAAAACCA-CTCCGGTACCCACAACGACCGAAA
1 CACCATTTGCACGACCTTGAAGCTAGAAACCAGCTCCGACACCCACATCGACTGGAA
** * *
4648970 CACCATTTGCGTGGCCTTGAAGCTCGAAAC
1 CACCATTTGCACGACCTTGAAGCTAGAAAC
4649000 AAGATTCGAT
Statistics
Matches: 375, Mismatches: 93, Indels: 27
0.76 0.19 0.05
Matches are distributed among these distances:
53 1 0.00
54 39 0.10
55 4 0.01
56 80 0.21
57 249 0.66
58 2 0.01
ACGTcount: A:0.32, C:0.34, G:0.16, T:0.18
Consensus pattern (57 bp):
CACCATTTGCACGACCTTGAAGCTAGAAACCAGCTCCGACACCCACATCGACTGGAA
Found at i:4648748 original size:114 final size:114
Alignment explanation
Indices: 4648488--4648999 Score: 491
Period size: 114 Copynumber: 4.5 Consensus size: 114
4648478 TTAAACCTTG
* * * **
4648488 AAACCAGCTCCGACGCCCACATCGACTGGAACACCATTTGCACGGTCTTGAAGA-CAGAAACCAA
1 AAACCAGCTCTGACACCCACATCGACCGGAACACCATTTGCACGACCTTGAAGATC-GAAACCAA
* * * *
4648552 CTCCGACACCCACATCGACC--AA-AACAGT-TACACGACCTTGTAGCTCG
65 CTCCGACACCCACATCGACCGGAACACCA-TCTGCACGACCTTGAAGCTCA
* * *
4648599 AAACCAGCTCTGACACCTACATCGACTGGAACACCATTTACACGACCTTGAAGATCGAAACCAAC
1 AAACCAGCTCTGACACCCACATCGACCGGAACACCATTTGCACGACCTTGAAGATCGAAACCAAC
** * * * *
4648664 TCCGACTTCCACATCAACTGGAACACCATGTGCACGACCTTGAAGCTTA
66 TCCGACACCCACATCGACCGGAACACCATCTGCACGACCTTGAAGCTCA
* * * * *
4648713 AAACTAGCTCTGACACCCACATCAACCGGAACACCATTTGTACGACCTTGAAGCTCGAAACCAGC
1 AAACCAGCTCTGACACCCACATCGACCGGAACACCATTTGCACGACCTTGAAGATCGAAACCAAC
* * * * * *
4648778 TCCGGCACCCATATCGACCGAAACACCATCTGTACGACCTTGATGCACA
66 TCCGACACCCACATCGACCGGAACACCATCTGCACGACCTTGAAGCTCA
* * ** * *
4648827 AAACCAGCTCT-AGTACCCACATCGATCGGAACACCATTTGCACGTTCTTGAAGCTTGAAACCAA
1 AAACCAGCTCTGA-CACCCACATCGACCGGAACACCATTTGCACGACCTTGAAGATCGAAACCAA
* * * * * *
4648891 CT-CGGCATCCATATCGGCCGGAACACCATCTGCACGACCTTGAAGATAA
65 CTCCGACACCCACATCGACCGGAACACCATCTGCACGACCTTGAAGCTCA
* ** * * ** * *
4648940 AAACCA-CTCCGGTACCCACAACGACCGAAACACCATTTGCGTGGCCTTGAAGCTCGAAAC
1 AAACCAGCTCTGACACCCACATCGACCGGAACACCATTTGCACGACCTTGAAGATCGAAAC
4649000 AAGATTCGAT
Statistics
Matches: 332, Mismatches: 62, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
111 72 0.22
112 44 0.13
113 49 0.15
114 167 0.50
ACGTcount: A:0.32, C:0.34, G:0.17, T:0.18
Consensus pattern (114 bp):
AAACCAGCTCTGACACCCACATCGACCGGAACACCATTTGCACGACCTTGAAGATCGAAACCAAC
TCCGACACCCACATCGACCGGAACACCATCTGCACGACCTTGAAGCTCA
Found at i:4650245 original size:2 final size:2
Alignment explanation
Indices: 4650238--4650272 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4650228 GGGGAATTAG
4650238 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4650273 CGAATGTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4654148 original size:27 final size:26
Alignment explanation
Indices: 4654109--4654179 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 26
4654099 AATATAGAAT
* * *
4654109 ATAAAAAGAATATATATGATGGTAATA
1 ATAAAAAG-ATATATATAATGGGAAAA
* *
4654136 ATAATAAAGATATAAACAATGGGAAAA
1 ATAA-AAAGATATATATAATGGGAAAA
4654163 ATAAAAAGATATATATA
1 ATAAAAAGATATATATA
4654180 GTAATAAATA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
26 11 0.31
27 21 0.58
28 4 0.11
ACGTcount: A:0.61, C:0.01, G:0.13, T:0.25
Consensus pattern (26 bp):
ATAAAAAGATATATATAATGGGAAAA
Found at i:4654614 original size:2 final size:2
Alignment explanation
Indices: 4654607--4654686 Score: 71
Period size: 2 Copynumber: 42.0 Consensus size: 2
4654597 GATGATTATG
* * * *
4654607 TA TA TA TA TA TA TA TA -A GTA TA -A TA -A AA TA -A AA TA AA AA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
*
4654646 TA TA CA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4654687 AATAAAGGAA
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
1 5 0.08
2 60 0.91
3 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (2 bp):
TA
Found at i:4656633 original size:105 final size:105
Alignment explanation
Indices: 4656451--4657120 Score: 1180
Period size: 105 Copynumber: 6.4 Consensus size: 105
4656441 TGTTATTTTT
* *
4656451 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAAT-TGAGAAATATTTGTTGGCAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-AATCTGAGAAATGTTTGTTGACAA
*
4656515 CCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
4656556 GAGTCCAATGTTCTTCGTTGTGAAGTTGAAATTGACTCTGAATCTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATCTGAGAAATGTTTGTTGACAAC
* *
4656621 CAGCGGTCCCTTCATCGTGAAGCTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
4656661 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATCTGAGAAATGCTTGTAGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATCTGAGAAATGTTTGTTGACAAC
4656726 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
4656766 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATCTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATCTGAGAAATGTTTGTTGACAAC
4656831 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
4656871 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATCTGAGAAATGTTTGTTGACAAC
4656936 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
4656976 GAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAACGCTTGTAGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATCTGAGAAATGTTTGTTGACAAC
4657041 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
4657081 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
4657121 GGTAAAACCT
Statistics
Matches: 541, Mismatches: 23, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
104 3 0.01
105 538 0.99
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATCTGAGAAATGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:4657950 original size:52 final size:54
Alignment explanation
Indices: 4657873--4657975 Score: 156
Period size: 52 Copynumber: 1.9 Consensus size: 54
4657863 TTCTCTTCTT
* * *
4657873 TTTTCTTTTTCTTTTTTCAATTTAGGGCGCCCTTTCGGGTTTTCACCCTAAACG
1 TTTTCTTTTTCTTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCACCCTAAACG
*
4657927 TTTT-TTTTT-TTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCATCCTAA
1 TTTTCTTTTTCTTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCACCCTAA
4657976 GCGAAGTATT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 36 0.80
53 5 0.11
54 4 0.09
ACGTcount: A:0.14, C:0.23, G:0.14, T:0.50
Consensus pattern (54 bp):
TTTTCTTTTTCTTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCACCCTAAACG
Found at i:4668390 original size:27 final size:26
Alignment explanation
Indices: 4668351--4668436 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 26
4668341 AATATAGAAT
*
4668351 ATAAAAAGAATATATATGATGGTAATA
1 ATAAAAAG-ATATATATAATGGTAATA
* * * *
4668378 ATAATAAAGATATAAACAATGGGAAAA
1 ATAA-AAAGATATATATAATGGTAATA
*
4668405 ATAAAAAGATATATATAATAGTAATAA
1 ATAAAAAGATATATATAATGGTAAT-A
4668432 ATAAA
1 ATAAA
4668437 TAAAAAACTA
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
26 16 0.34
27 27 0.57
28 4 0.09
ACGTcount: A:0.62, C:0.01, G:0.12, T:0.26
Consensus pattern (26 bp):
ATAAAAAGATATATATAATGGTAATA
Found at i:4668730 original size:141 final size:138
Alignment explanation
Indices: 4668606--4668861 Score: 395
Period size: 139 Copynumber: 1.8 Consensus size: 138
4668596 ATATATTATT
*
4668606 TAAATAAAACAAATGAATAAAAATAAATATACAGATAATAATAAAAGAAAAAAAATATATGTTTA
1 TAAATAAAAAAAAT--ATAAAAA-AAATATACAGATAATAATAAAAG-AAAAAAA-ATATGTTTA
* * *
4668671 TATACGCTATCAGTAATACTTAAAATAATAAAATTAACGATGGTTATGTATAGAGATAAATAAAA
61 TATACGCTATCAATAATACTTAAAATAATAAAAATAACGATGATTATGTATAGAGATAAATAAAA
4668736 ATAAATACATACAG
126 AT-AATACATACAG
* * *
4668750 TAAATAAAAAAAATATATAAAGAATATACATATAATAATAAAAGAAAAAAAATATGTTTATATAC
1 TAAATAAAAAAAATATAAAAAAAATATACAGATAATAATAAAAGAAAAAAAATATGTTTATATAC
4668815 GCTATCAATAATACTTAAAATAATAAAAATAACGATGATTATGTATA
66 GCTATCAATAATACTTAAAATAATAAAAATAACGATGATTATGTATA
4668862 TATATATATA
Statistics
Matches: 105, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
139 58 0.55
140 7 0.07
141 21 0.20
142 6 0.06
144 13 0.12
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.28
Consensus pattern (138 bp):
TAAATAAAAAAAATATAAAAAAAATATACAGATAATAATAAAAGAAAAAAAATATGTTTATATAC
GCTATCAATAATACTTAAAATAATAAAAATAACGATGATTATGTATAGAGATAAATAAAAATAAT
ACATACAG
Found at i:4670900 original size:19 final size:19
Alignment explanation
Indices: 4670876--4670914 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
4670866 AGAGTAATTT
4670876 ATTCCGAATTAATTATTAG
1 ATTCCGAATTAATTATTAG
4670895 ATTCCGAATTAATTATTAG
1 ATTCCGAATTAATTATTAG
4670914 A
1 A
4670915 GAAAATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (19 bp):
ATTCCGAATTAATTATTAG
Found at i:4672662 original size:18 final size:19
Alignment explanation
Indices: 4672639--4672679 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
4672629 AATCCCTAAT
4672639 TTTTTA-GGATTTAACCCA
1 TTTTTAGGGATTTAACCCA
4672657 TTTTTAGGGATTTAACCCA
1 TTTTTAGGGATTTAACCCA
4672676 TTTT
1 TTTT
4672680 CAATGGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.49
Consensus pattern (19 bp):
TTTTTAGGGATTTAACCCA
Found at i:4673087 original size:3 final size:3
Alignment explanation
Indices: 4673079--4673153 Score: 53
Period size: 3 Copynumber: 24.0 Consensus size: 3
4673069 TTAGTGTTTT
* * *
4673079 ATA ATA ATA ATA ATA ATTA ATGA AT- ACA ATT ATA TTA ATA ATA ATA
1 ATA ATA ATA ATA ATA A-TA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * *
4673125 ATCA AAA ATA ATA ATCA GTA CTA ATA ATA
1 AT-A ATA ATA ATA AT-A ATA ATA ATA ATA
4673154 TTATTCAAAC
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
2 1 0.02
3 45 0.80
4 10 0.18
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4674947 original size:30 final size:30
Alignment explanation
Indices: 4674904--4674973 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
4674894 ACAAGCCTTA
* * * *
4674904 GAAAAATTTGGGGACC-ATCCTATAATTTTT
1 GAAAAGTTAGGGGACCAATCATA-AATTTTG
4674934 GAAAAGTTAGGGGACCAAATCATAAATTTTG
1 GAAAAGTTAGGGGACC-AATCATAAATTTTG
4674965 GAAAAGTTA
1 GAAAAGTTA
4674974 TGGATTGTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 14 0.41
31 15 0.44
32 5 0.15
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (30 bp):
GAAAAGTTAGGGGACCAATCATAAATTTTG
Found at i:4676546 original size:59 final size:59
Alignment explanation
Indices: 4676472--4676592 Score: 197
Period size: 59 Copynumber: 2.1 Consensus size: 59
4676462 AGCAGGCTAT
* * * * *
4676472 ATATTCGGGATTGCACTGAAGTATAACTAGTGCATATGGTGGGCACGACCTTATGTGTC
1 ATATTCGGGACTGCACTAAAGTACAACTAGTGCAGATGGTGGGCACAACCTTATGTGTC
4676531 ATATTCGGGACTGCACTAAAGTACAACTAGTGCAGATGGTGGGCACAACCTTATGTGTC
1 ATATTCGGGACTGCACTAAAGTACAACTAGTGCAGATGGTGGGCACAACCTTATGTGTC
4676590 ATA
1 ATA
4676593 CTAGGGTTAG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (59 bp):
ATATTCGGGACTGCACTAAAGTACAACTAGTGCAGATGGTGGGCACAACCTTATGTGTC
Found at i:4677636 original size:21 final size:22
Alignment explanation
Indices: 4677588--4677640 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
4677578 ACGTATAATT
*
4677588 ATAAATTAGTTGAAAATTTAAAG
1 ATAAATTA-TTGAAAATTAAAAG
*
4677611 ATAAATTATTTAAAA-TAAAAG
1 ATAAATTATTGAAAATTAAAAG
*
4677632 GTAAATTAT
1 ATAAATTAT
4677641 ACTAGTAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 13 0.48
22 6 0.22
23 8 0.30
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (22 bp):
ATAAATTATTGAAAATTAAAAG
Found at i:4678531 original size:2 final size:2
Alignment explanation
Indices: 4678524--4678549 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4678514 TTCATATGTG
4678524 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4678550 CATACAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4679567 original size:20 final size:22
Alignment explanation
Indices: 4679523--4679567 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
4679513 GGGGTATCAG
*
4679523 TACCATAGTATAGAAGTATCGA
1 TACCATAGTATAGAAGTACCGA
*
4679545 TACCATAGTAT-G-GGTACCGA
1 TACCATAGTATAGAAGTACCGA
4679565 TAC
1 TAC
4679568 TATTGAGACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
21 1 0.05
22 11 0.52
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (22 bp):
TACCATAGTATAGAAGTACCGA
Found at i:4679959 original size:53 final size:54
Alignment explanation
Indices: 4679897--4680036 Score: 214
Period size: 53 Copynumber: 2.6 Consensus size: 54
4679887 ATTATGCGCG
* *
4679897 AAAACTAAGAAATTCTTAATAAGTTTATGAATTTCAGTAT-GGCACTGTGTTTGC
1 AAAACTAAGAAATTCATAATAAG-TTATGAATTTCAGTATGGGCACTGTGTGTGC
*
4679951 -AAACTAAGAAATTCATAATAAGCTTATGAATTTCAGTATGGGCATTGTGTGTGC
1 AAAACTAAGAAATTCATAATAAG-TTATGAATTTCAGTATGGGCACTGTGTGTGC
4680005 AAAACTAAGAAATTCATAATAAGTTA-GAATTT
1 AAAACTAAGAAATTCATAATAAGTTATGAATTT
4680037 ATAATGAAAT
Statistics
Matches: 80, Mismatches: 4, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
53 43 0.54
54 15 0.19
55 22 0.28
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (54 bp):
AAAACTAAGAAATTCATAATAAGTTATGAATTTCAGTATGGGCACTGTGTGTGC
Found at i:4680198 original size:81 final size:81
Alignment explanation
Indices: 4680100--4680754 Score: 907
Period size: 81 Copynumber: 8.1 Consensus size: 81
4680090 TGTTCTAAAA
* * * *
4680100 TAAAAGATTATTGGCCTAGTTGTGCATTTGATAGAAATGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4680165 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * * *
4680181 TAAAAGATTAATGGCCTAACTGTGCATTTGATAGAAATGTGTCAATTATGTCAATTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4680246 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
*
4680262 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4680327 GTTAAATACATTTGAG
66 GTTAAATACCTTTGAG
* * * * *
4680343 TAAAAGATCAATGGCCTAGCTGTGCATTTCACAGAAAGGTATCAATTATGACAGTTAGATGAAAA
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4680408 GTTCAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * * * *
4680424 TAAAAGATAAATGACCTAGCAGTGCATTTGAGAGAAAGATGTCAATTATGCCAGTTATATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* *
4680489 TTTAAATACCTTTGTG
66 GTTAAATACCTTTGAG
* *
4680505 TAAAAGATTAATGGCCTAGCAT-TGCATTTGACAGAAAGGTGTCATTTATGCCAGTTCGATGAAA
1 TAAAAGATTAATGGCCTAGC-TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAA
*
4680569 GGATAAATACCTTTGAG
65 GGTTAAATACCTTTGAG
* * * * *
4680586 TAAAAGATTAATGGCATAGTTGTGCATTTGATAGAAAGGTATCAATTATTCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4680651 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* ** ** * * * *
4680667 TAAAAGACTAAAAGCCTAATTGTGCCTTTGGCATAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4680732 GTTAAATACCTTTGGG
66 GTTAAATACCTTTGAG
4680748 TAAAAGA
1 TAAAAGA
4680755 CTAAATGTCT
Statistics
Matches: 507, Mismatches: 65, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
80 1 0.00
81 506 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (81 bp):
TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:4681657 original size:81 final size:81
Alignment explanation
Indices: 4681564--4682186 Score: 848
Period size: 81 Copynumber: 7.8 Consensus size: 81
4681554 TGTTCTAAAA
* * *
4681564 TAAAAGATTAATGGCCTAGCTATGTATTTGACATAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4681629 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * *
4681645 TAAAAGATTAATGACCTAGCTGTACATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGGAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4681710 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
4681726 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATTCCAGTTTGATGAAAT
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4681791 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
*
4681807 TAAAAGATTAATGGCCTAGCTGGGCATTTGACAGAAAGGTGTCAATTATGCCAGTT--A-G--A-
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4681866 -TTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
4681881 TAAAAGATTAATGGCCTAGCAGTGCATTTGACAGAAAGGTGTAAATTATGCCAGTTAAATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4681946 GTTAAATAACTTTGAG
66 GTTAAATACCTTTGAG
* * * * *
4681962 TAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAAAGTGTTAATTATGCCAGTAAGATGAAAT
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
4682027 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * * ** *
4682043 TAAAAGATTAATGGTCTAACTGTGCCTTTGGTAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
4682108 GTTAAATACCTTTGGG
66 GTTAAATACCTTTGAG
* * * * * * * * * *
4682124 TAAACGACTAAAT-GTCTAACGGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTGGATGAA
1 TAAAAGA-TTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
4682187 GGACTAATTG
Statistics
Matches: 485, Mismatches: 49, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
74 68 0.14
76 2 0.00
77 1 0.00
78 1 0.00
79 2 0.00
81 407 0.84
82 4 0.01
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.30
Consensus pattern (81 bp):
TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:4681984 original size:236 final size:236
Alignment explanation
Indices: 4681564--4682102 Score: 799
Period size: 236 Copynumber: 2.3 Consensus size: 236
4681554 TGTTCTAAAA
* * *
4681564 TAAAAGATTAATGGCCTAGCTATGTATTTGACATAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTT--A-G--A-
* * *
4681629 GTTAAATACCTTTGAGTAAAAGATTAATGACCTAGCTGTACATTTGACAGAAATGTGTCAATTAT
60 -TTAAATACCTTTGAGTAAAAGATTAATGACCTAGCAGTACATTTGACAGAAAGGTGTAAATTAT
* * *
4681694 GCCAGTTAGATGGAAGGTTAAATACCTTTGAGTAAAAGATTAATGGCCTAGCTGTGCATTTGACA
124 GCCAGTTAAATGAAAGGTTAAATAACTTTGAGTAAAAGATTAATGGCCTAGCTGTGCATTTGACA
* * **
4681759 GAAAGGTGTCAATTATTCCAGTTTGATGAAATGTTAAATACCTTTGAG
189 GAAAAGTGTCAATTATGCCAGTAAGATGAAATGTTAAATACCTTTGAG
*
4681807 TAAAAGATTAATGGCCTAGCTGGGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATTAAAT
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATTAAAT
* *
4681872 ACCTTTGAGTAAAAGATTAATGGCCTAGCAGTGCATTTGACAGAAAGGTGTAAATTATGCCAGTT
66 ACCTTTGAGTAAAAGATTAATGACCTAGCAGTACATTTGACAGAAAGGTGTAAATTATGCCAGTT
*
4681937 AAATGAAAGGTTAAATAACTTTGAGTAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAAAGT
131 AAATGAAAGGTTAAATAACTTTGAGTAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAAGT
*
4682002 GTTAATTATGCCAGTAAGATGAAATGTTAAATACCTTTGAG
196 GTCAATTATGCCAGTAAGATGAAATGTTAAATACCTTTGAG
* * * ** *
4682043 TAAAAGATTAATGGTCTAACTGTGCCTTTGGTAGAAAGGTGTCAATCATGCCAGTTAGAT
1 TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGAT
4682103 GAAAGGTTAA
Statistics
Matches: 271, Mismatches: 25, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
236 216 0.80
238 1 0.00
240 1 0.00
241 1 0.00
243 52 0.19
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (236 bp):
TAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATTAAAT
ACCTTTGAGTAAAAGATTAATGACCTAGCAGTACATTTGACAGAAAGGTGTAAATTATGCCAGTT
AAATGAAAGGTTAAATAACTTTGAGTAAAAGATTAATGGCCTAGCTGTGCATTTGACAGAAAAGT
GTCAATTATGCCAGTAAGATGAAATGTTAAATACCTTTGAG
Found at i:4682153 original size:317 final size:317
Alignment explanation
Indices: 4681564--4682179 Score: 905
Period size: 317 Copynumber: 1.9 Consensus size: 317
4681554 TGTTCTAAAA
* * * *
4681564 TAAAAGATTAATGGCCTAGCTATGTATTTGACATAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATGGCCTAGCTATGCATTTGACAGAAAGGTGTAAATTATGCCAGTTAAATGAAAG
* *
4681629 GTTAAATACCTTTGAGTAAAAGATTAATGACCTAGCTGTACATTTGACAGAAATGTGTCAATTAT
66 GTTAAATAACTTTGAGTAAAAGATTAATGACCTAGCTGTACATTTGACAGAAAAGTGTCAATTAT
* * *
4681694 GCCAGTTAGATGGAAGGTTAAATACCTTTGAGTAAAAGATTAATGGCCTAGCTGTGCATTTGACA
131 GCCAGTAAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGGCCTAACTGTGCATTTGACA
* * * * *
4681759 GAAAGGTGTCAATTATTCCAGTTTGATGAAATGTTAAATACCTTTGAGTAAAAGATTAATGGCCT
196 GAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATAAATGGCCT
* * * *
4681824 AGCTGGGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATTAAATACCTTTGAG
261 AACTGGGCATTTGACAGAAAGGTGCCAATAATGCAAGTTAGATTAAATACCTTTGAG
4681881 TAAAAGATTAATGGCCTAGC-AGTGCATTTGACAGAAAGGTGTAAATTATGCCAGTTAAATGAAA
1 TAAAAGATTAATGGCCTAGCTA-TGCATTTGACAGAAAGGTGTAAATTATGCCAGTTAAATGAAA
* * * *
4681945 GGTTAAATAACTTTGAGTAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAAAGTGTTAATTA
65 GGTTAAATAACTTTGAGTAAAAGATTAATGACCTAGCTGTACATTTGACAGAAAAGTGTCAATTA
* * * **
4682010 TGCCAGTAAGATGAAATGTTAAATACCTTTGAGTAAAAGATTAATGGTCTAACTGTGCCTTTGGT
130 TGCCAGTAAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGGCCTAACTGTGCATTTGAC
* * *
4682075 AGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGGGTAAACGACTAAAT-GT
195 AGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGA-TAAATGGC
*
4682139 CTAAC-GGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTT
259 CTAACTGG-GCATTTGACAGAAAGGTGCCAATAATGCAAGTT
4682180 GGATGAAGGA
Statistics
Matches: 265, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
316 3 0.01
317 258 0.97
318 4 0.02
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (317 bp):
TAAAAGATTAATGGCCTAGCTATGCATTTGACAGAAAGGTGTAAATTATGCCAGTTAAATGAAAG
GTTAAATAACTTTGAGTAAAAGATTAATGACCTAGCTGTACATTTGACAGAAAAGTGTCAATTAT
GCCAGTAAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGGCCTAACTGTGCATTTGACA
GAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATAAATGGCCT
AACTGGGCATTTGACAGAAAGGTGCCAATAATGCAAGTTAGATTAAATACCTTTGAG
Found at i:4686170 original size:2 final size:2
Alignment explanation
Indices: 4686165--4686212 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
4686155 ACACACATGC
4686165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4686207 AT AT AT
1 AT AT AT
4686213 GTCATACCAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4686756 original size:163 final size:164
Alignment explanation
Indices: 4686573--4687241 Score: 699
Period size: 163 Copynumber: 4.1 Consensus size: 164
4686563 TGGTAAATAA
* *
4686573 ATCAATACTGGAAGATGTGTCTGCTCCACTATTCATTCAGGGGAAATCAGACAGGAATTGTGCCT
1 ATCAATATTGGAAGATGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACAGGAATTGTGCCT
* *
4686638 CTTTTTTAGGTATACAGATCAATGTTGGAAGACGTGTTTGCTCTACCATTCATTCAGGGGAAATC
66 CTTTTTTAGGTAGACAGATCAATGTTGGAAGACGTGTCTGCTCTACCATTCATTCAGGGGAAATC
* *
4686703 AAATTGGATCTGTGCCT-TTTTTCGAGTAGACAG
131 AAACTGGATCTGTGCCTATTTTTCGGGTAGACAG
* * ** *
4686736 ATCAATATTGGAAGATGTGTCTGCTCCACCATTTATTCATGGGAAATCAGATTGGATTTGTGCCT
1 ATCAATATTGGAAGATGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACAGGAATTGTG-C-
***
4686801 CTCTTTTTTTTATAGACAGATCAATGTTGGAAGACGTGTCTGCT-TCACCATTCATTCAGGGGAA
64 CTCTTTTTTAGGTAGACAGATCAATGTTGGAAGACGTGTCTGCTCT-ACCATTCATTCAGGGGAA
* * * *
4686865 ATTAGACTGGATCTGGGCCTATTTTTTGGGTAGACAG
128 ATCAAACTGGATCTGTGCCTATTTTTCGGGTAGACAG
* * * * *
4686902 ATCAATGTTGGAAGAAGTATCTGCTCCACCATTCATTAAGGGGAAATCAGACTGG-ATATGTGCC
1 ATCAATATTGGAAGATGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACAGGAAT-TGTGCC
* * * *
4686966 TCTTTTTTGGGTAGACAAATCAATGTTGGAAGACGTGTCTACTCCACCATTCATTCAGGGGAAAT
65 TCTTTTTTAGGTAGACAGATCAATGTTGGAAGACGTGTCTGCTCTACCATTCATTCAGGGGAAAT
* * * * *
4687031 CAAACTGGATTTGTGACTCTTTTTTGGGTAGACAT
130 CAAACTGGATCTGTGCCTATTTTTCGGGTAGACAG
* * * * * * * * *
4687066 ATCAATGTTGGAAGACGTCTATGCTCCACTATTCATTTA--TGAAGATGAGACATGGCA-TGTGC
1 ATCAATATTGGAAGATGTGTCTGCTCCACCATTCATTCAGGGGAA-ATCAGACA-GGAATTGTGC
* * * * * **
4687128 CTC-TTCTTAGGGTAGACATATCAACT-TTGGAAAATGTGTATGCTCTAATATTCATTCAGGGGA
64 CTCTTTTTTA-GGTAGACAGATCAA-TGTTGGAAGACGTGTCTGCTCTACCATTCATTCAGGGGA
* * * * * * *
4687191 GATCAGACTCGATATGTGCCTCTTCTTCGGGTAGACAT
127 AATCAAACTGGATCTGTGCCTATTTTTCGGGTAGACAG
4687229 ATCAACT-TTGGAA
1 ATCAA-TATTGGAA
4687242 AAGGTTTTCT
Statistics
Matches: 430, Mismatches: 64, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
162 7 0.02
163 154 0.36
164 127 0.30
165 76 0.18
166 66 0.15
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (164 bp):
ATCAATATTGGAAGATGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACAGGAATTGTGCCT
CTTTTTTAGGTAGACAGATCAATGTTGGAAGACGTGTCTGCTCTACCATTCATTCAGGGGAAATC
AAACTGGATCTGTGCCTATTTTTCGGGTAGACAG
Found at i:4687243 original size:82 final size:82
Alignment explanation
Indices: 4686581--4687241 Score: 706
Period size: 82 Copynumber: 8.1 Consensus size: 82
4686571 AAATCAATAC
* * *
4686581 TGGAAGATGTGTCTGCTCCACTATTCATTCAGGGGAAATCAGACAGGA-ATTGTGCCTCTTTTTT
1 TGGAAGACGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACTGGATA-TGTGCCTCTTTTTT
* *
4686645 AGGTATACAGATCAATGT
65 GGGTAGACAGATCAATGT
* * * * * *
4686663 TGGAAGACGTGTTTGCTCTACCATTCATTCAGGGGAAATCAAATTGGATCTGTGCCT-TTTTTCG
1 TGGAAGACGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACTGGATATGTGCCTCTTTTTTG
* *
4686727 AGTAGACAGATCAATAT
66 GGTAGACAGATCAATGT
* * * * *
4686744 TGGAAGATGTGTCTGCTCCACCATTTATTCATGGGAAATCAGATTGGATTTGTGCCTCTCTTTTT
1 TGGAAGACGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACTGGATATGTG-C-CTCTTTTT
***
4686809 TTTATAGACAGATCAATGT
64 TGGGTAGACAGATCAATGT
* * * * *
4686828 TGGAAGACGTGTCTGCTTCACCATTCATTCAGGGGAAATTAGACTGGATCTGGGCCTATTTTTTG
1 TGGAAGACGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACTGGATATGTGCCTCTTTTTTG
4686893 GGTAGACAGATCAATGT
66 GGTAGACAGATCAATGT
* * *
4686910 TGGAAGAAGTATCTGCTCCACCATTCATTAAGGGGAAATCAGACTGGATATGTGCCTCTTTTTTG
1 TGGAAGACGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACTGGATATGTGCCTCTTTTTTG
*
4686975 GGTAGACAAATCAATGT
66 GGTAGACAGATCAATGT
* * * *
4686992 TGGAAGACGTGTCTACTCCACCATTCATTCAGGGGAAATCAAACTGGATTTGTGACTCTTTTTTG
1 TGGAAGACGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACTGGATATGTGCCTCTTTTTTG
*
4687057 GGTAGACATATCAATGT
66 GGTAGACAGATCAATGT
* * * * * * * *
4687074 TGGAAGACGTCTATGCTCCACTATTCATTTA--TGAAGATGAGACATGG-CATGTGCCTCTTCTT
1 TGGAAGACGTGTCTGCTCCACCATTCATTCAGGGGAA-ATCAGAC-TGGATATGTGCCTCTTTTT
* *
4687136 AGGGTAGACATATCAACT-T
64 TGGGTAGACAGATCAA-TGT
* * * * ** * * * *
4687155 TGGAAAATGTGTATGCTCTAATATTCATTCAGGGGAGATCAGACTCGATATGTGCCTCTTCTTCG
1 TGGAAGACGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACTGGATATGTGCCTCTTTTTTG
*
4687220 GGTAGACATATCAACT-T
66 GGTAGACAGATCAA-TGT
4687237 TGGAA
1 TGGAA
4687242 AAGGTTTTCT
Statistics
Matches: 490, Mismatches: 79, Indels: 20
0.83 0.13 0.03
Matches are distributed among these distances:
80 3 0.01
81 125 0.26
82 292 0.60
83 5 0.01
84 65 0.13
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (82 bp):
TGGAAGACGTGTCTGCTCCACCATTCATTCAGGGGAAATCAGACTGGATATGTGCCTCTTTTTTG
GGTAGACAGATCAATGT
Found at i:4687633 original size:229 final size:227
Alignment explanation
Indices: 4687232--4687759 Score: 714
Period size: 229 Copynumber: 2.3 Consensus size: 227
4687222 TAGACATATC
** *
4687232 AACTTTGGAAAAGGTTTTCTTACTTTTCAAACATTTCATTTTCTGACAACACTGAATGAGAAACT
1 AACTTTGGAAATCGTTTTCTTACTTTTCAAAAATTTCATTTTCTGACAACACTGAATGAGAAAC-
* * ** *
4687297 TTTGGAAGTCGCTTCCTCATCATATGAAAACATCCTACCCGTATGTCTTATAGATGGCCTTAAGG
65 TTTGGAAGTCGCTTCCTCATCATATGAAAACATCCTACCCATAGGTCTTATAGATGGCCCAAAGA
* *
4687362 ACTTATCATCTTACTCGGAAGCAAGACATATGACCCGAAGGATTTAATCATCATGCTCGGAAGGC
130 ACTTATCATCTTACTCAGAAGCAAGACATATGACCCGAAGGATTTAAGCATCATGCTCGGAAGGC
* * *
4687427 TTACTGATGGCTCGAAGGACTTACTATGTAAGA
195 TTACTGATGGCCCGAAGGACTTACTAAGTAAAA
* *
4687460 AACTTTGGAAATCATTTTCTTACTTTTCAAAAAAATTCCATTTTCTGACAACACTGAATGAGAAA
1 AACTTTGGAAATCGTTTTCTTACTTTTC--AAAAATTTCATTTTCTGACAACACTGAATGAGAAA
* * * * * * *
4687525 CTTTGGAAGTTGGTTTCTCATCATGTGAAAACATCCTGCCTATAGGTCTTATAGATGGCCCAAAT
64 CTTTGGAAGTCGCTTCCTCATCATATGAAAACATCCTACCCATAGGTCTTATAGATGGCCCAAAG
* ** * *
4687590 AACTTATCATCTTGCTCAGAAGCCTGACATGTGACCTGAAGGATTTAAGCATCATGCTCGGAAGG
129 AACTTATCATCTTACTCAGAAGCAAGACATATGACCCGAAGGATTTAAGCATCATGCTCGGAAGG
4687655 CTTACTGATGGCCCGAAGGACTTACTAAGTAAAA
194 CTTACTGATGGCCCGAAGGACTTACTAAGTAAAA
* * * * * * * *
4687689 AACTTTGGAAATTGCTTTCTTACTTTTCAAAGATTTCGTTTTCTTAAAACATTAAATGAGAAACT
1 AACTTTGGAAATCGTTTTCTTACTTTTCAAAAATTTCATTTTCTGACAACACTGAATGAGAAACT
4687754 TTGGAA
66 TTGGAA
4687760 ATAAGTTTCT
Statistics
Matches: 261, Mismatches: 37, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
227 36 0.14
228 25 0.10
229 166 0.64
230 34 0.13
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (227 bp):
AACTTTGGAAATCGTTTTCTTACTTTTCAAAAATTTCATTTTCTGACAACACTGAATGAGAAACT
TTGGAAGTCGCTTCCTCATCATATGAAAACATCCTACCCATAGGTCTTATAGATGGCCCAAAGAA
CTTATCATCTTACTCAGAAGCAAGACATATGACCCGAAGGATTTAAGCATCATGCTCGGAAGGCT
TACTGATGGCCCGAAGGACTTACTAAGTAAAA
Found at i:4696081 original size:12 final size:12
Alignment explanation
Indices: 4696064--4696089 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4696054 AACACATATA
4696064 ATGAATAATAAT
1 ATGAATAATAAT
4696076 ATGAATAATAAT
1 ATGAATAATAAT
4696088 AT
1 AT
4696090 AGCATGAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (12 bp):
ATGAATAATAAT
Found at i:4703662 original size:41 final size:41
Alignment explanation
Indices: 4703614--4703723 Score: 112
Period size: 41 Copynumber: 2.7 Consensus size: 41
4703604 TCACCCTTGA
*
4703614 AGATGAATTTCACTTCGGATTATTAGTGATTTCAACCTTCG
1 AGATGAATTTCACTTCGGATTATTAGTGAATTCAACCTTCG
* * * * * * * *
4703655 GGGTGAATTTAACTTTGGATTGTCAGTGAATTCACCCTTTG
1 AGATGAATTTCACTTCGGATTATTAGTGAATTCAACCTTCG
* * *
4703696 AGATAAATCTCACTTCAGATTATTAGTG
1 AGATGAATTTCACTTCGGATTATTAGTG
4703724 GATAATCCCT
Statistics
Matches: 51, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (41 bp):
AGATGAATTTCACTTCGGATTATTAGTGAATTCAACCTTCG
Found at i:4705925 original size:18 final size:17
Alignment explanation
Indices: 4705885--4705926 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
4705875 GGTTATGTCA
4705885 TTTATTTTCAGAGGAAC
1 TTTATTTTCAGAGGAAC
4705902 TATTATTTTCAGTATGG-AC
1 T-TTATTTTCAG-A-GGAAC
4705921 TTTATT
1 TTTATT
4705927 CGGATTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 1 0.05
18 15 0.68
19 4 0.18
20 2 0.09
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (17 bp):
TTTATTTTCAGAGGAAC
Found at i:4706301 original size:14 final size:14
Alignment explanation
Indices: 4706282--4706309 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4706272 AAGGTTGGAG
4706282 AGAAAGTATTTCTT
1 AGAAAGTATTTCTT
4706296 AGAAAGTATTTCTT
1 AGAAAGTATTTCTT
4706310 TAAGTCTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
AGAAAGTATTTCTT
Found at i:4707104 original size:137 final size:138
Alignment explanation
Indices: 4706858--4707136 Score: 454
Period size: 137 Copynumber: 2.0 Consensus size: 138
4706848 ATTACATGGA
*
4706858 ATAATGACTAAAATGAAAGAAAGTAATTATGTAAGCTTAAAGTGAAAATAAAGAAAGAGTGAGAT
1 ATAATGACTAAAATGAAAGAAAGTAATTATGTAAGCTTAAAGTGAAAATAAAGAAAGAGTGAAAT
* * *
4706923 CCTTTCATGAACAATTCCACCAAAAAATATGGAAACTTTTGCAATCAATTGATATTAA-CATAGG
66 CCTTTAATGAACAATTCCACCAAAAAACAGGGAAACTTTTGCAATCAATTGATATTAACCATAGG
4706987 GAATCCAT
131 GAATCCAT
* *
4706995 ATAATGACTAAAATGAAAGAAAGTGATTATGTAAGTTTAAAGTGAAAATAAAG-AAGAGTGAAAT
1 ATAATGACTAAAATGAAAGAAAGTAATTATGTAAGCTTAAAGTGAAAATAAAGAAAGAGTGAAAT
* *
4707059 CCTTTAATGAACAATTTCACCTGAAAAACAGGGAAACTTTTGCAATCAATTGATATTAACCATAG
66 CCTTTAATGAACAATTCCACC-AAAAAACAGGGAAACTTTTGCAATCAATTGATATTAACCATAG
*
4707124 GGTATCCAT
130 GGAATCCAT
4707133 ATAA
1 ATAA
4707137 AATGTCATAA
Statistics
Matches: 131, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
136 29 0.22
137 85 0.65
138 17 0.13
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (138 bp):
ATAATGACTAAAATGAAAGAAAGTAATTATGTAAGCTTAAAGTGAAAATAAAGAAAGAGTGAAAT
CCTTTAATGAACAATTCCACCAAAAAACAGGGAAACTTTTGCAATCAATTGATATTAACCATAGG
GAATCCAT
Found at i:4707866 original size:2 final size:2
Alignment explanation
Indices: 4707811--4707848 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4707801 TATACACCTC
4707811 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4707849 TCATATAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4714589 original size:14 final size:14
Alignment explanation
Indices: 4714555--4714599 Score: 72
Period size: 14 Copynumber: 3.1 Consensus size: 14
4714545 ATATTGCTAC
4714555 CTGTAGAAAACAGA
1 CTGTAGAAAACAGA
4714569 CTGTGTAGAAAACAGA
1 C--TGTAGAAAACAGA
4714585 CTGTAGAAAACAGA
1 CTGTAGAAAACAGA
4714599 C
1 C
4714600 AAGTCTGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 15 0.52
16 14 0.48
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (14 bp):
CTGTAGAAAACAGA
Found at i:4717261 original size:106 final size:106
Alignment explanation
Indices: 4717076--4717293 Score: 391
Period size: 106 Copynumber: 2.1 Consensus size: 106
4717066 CGGATTAATA
* *
4717076 AAACCCTATGGACCCAAATCAAACCTAATACAAAATTAAGGCAATAATTAACCAAATTCACCAAA
1 AAACCCCATGGACCCAAATCAAACCTAATACAAAATTAAGACAATAATTAACCAAATTCACCAAA
*
4717141 ACCCGCCAAAATTCTCAACTATATAATCCAAAGAGGAAAAG
66 ACCCGCCAAAATTCTCAACTATAAAATCCAAAGAGGAAAAG
*
4717182 AAACCCCATGGACCCAAATCAAACCTAATACCAAATTAAGACAATAATTAACCAAATTCACCAAA
1 AAACCCCATGGACCCAAATCAAACCTAATACAAAATTAAGACAATAATTAACCAAATTCACCAAA
*
4717247 ACCCGCCAAAATTCTCAAGTATAAAATCCAAAGAGGAAAAG
66 ACCCGCCAAAATTCTCAACTATAAAATCCAAAGAGGAAAAG
4717288 AAACCC
1 AAACCC
4717294 TATCAAAATC
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 107 1.00
ACGTcount: A:0.50, C:0.26, G:0.08, T:0.17
Consensus pattern (106 bp):
AAACCCCATGGACCCAAATCAAACCTAATACAAAATTAAGACAATAATTAACCAAATTCACCAAA
ACCCGCCAAAATTCTCAACTATAAAATCCAAAGAGGAAAAG
Found at i:4720063 original size:16 final size:17
Alignment explanation
Indices: 4720026--4720070 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 17
4720016 TTTTATGAGA
4720026 GAATTGGAATCTGTGAAG
1 GAATTGGAATCTGT-AAG
4720044 GAATTGGAATCTGT-AG
1 GAATTGGAATCTGTAAG
4720060 GAATTGGAATC
1 GAATTGGAATC
4720071 CAACTCCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 13 0.48
18 14 0.52
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (17 bp):
GAATTGGAATCTGTAAG
Found at i:4720730 original size:37 final size:38
Alignment explanation
Indices: 4720660--4720737 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 38
4720650 CGAACCGACC
* *
4720660 CGACCCGAATATCATACTTAAAAAAACGCGACCCAACT
1 CGACCCGAATATCACACTTAAAAAAACCCGACCCAACT
*
4720698 CGACCCGAATATCACACTT-AAAAAACCCGACCCGACT
1 CGACCCGAATATCACACTTAAAAAAACCCGACCCAACT
4720735 CGA
1 CGA
4720738 ACAAAATAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
37 19 0.51
38 18 0.49
ACGTcount: A:0.40, C:0.35, G:0.12, T:0.14
Consensus pattern (38 bp):
CGACCCGAATATCACACTTAAAAAAACCCGACCCAACT
Found at i:4721162 original size:24 final size:24
Alignment explanation
Indices: 4721103--4721162 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
4721093 CCATCCATTT
4721103 TTTGATGGAATTCACTTTCCCTCA
1 TTTGATGGAATTCACTTTCCCTCA
**
4721127 TTTGATAAAATTCACTTTCCCTCA
1 TTTGATGGAATTCACTTTCCCTCA
4721151 TTTGATGGAATT
1 TTTGATGGAATT
4721163 GAATTCCATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.43
Consensus pattern (24 bp):
TTTGATGGAATTCACTTTCCCTCA
Found at i:4721994 original size:2 final size:2
Alignment explanation
Indices: 4721987--4722027 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
4721977 TGTTATTACT
4721987 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4722028 CATCTACAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4722729 original size:21 final size:21
Alignment explanation
Indices: 4722704--4722748 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4722694 TTGGGCACCC
* *
4722704 AAAATGATTTTCATTTTAATA
1 AAAATAATTTTAATTTTAATA
*
4722725 AAAATAATTTTAATTTTATTA
1 AAAATAATTTTAATTTTAATA
4722746 AAA
1 AAA
4722749 CAACATCTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
AAAATAATTTTAATTTTAATA
Found at i:4723585 original size:2 final size:2
Alignment explanation
Indices: 4723578--4723650 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
4723568 TATAATATTG
4723578 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4723620 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4723651 CACACGTAAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4724622 original size:109 final size:110
Alignment explanation
Indices: 4724297--4724805 Score: 758
Period size: 109 Copynumber: 4.6 Consensus size: 110
4724287 TACCGAATGA
*
4724297 CACTATGTGTGC-AAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGACACTGTGTG
1 CACTGTGTGTGCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGACACTGTGTG
*
4724361 TGCAAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCATATGGG
65 TGC-AAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
* * *
4724408 CACTGTGTGTGCAAAACTAAAAAATTCATAATAAGTTTATGAATTTTTCGTATGGACACCGTGTG
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAA-TTTCCGTATGGACACTGTGTG
* *
4724473 TACAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTAAGGG
65 TGC-AAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
*
4724519 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGACATTGTGTGT
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGACACTGTGTGT
4724584 GCAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
66 GCAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
* *
4724628 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCTTATGGGCACTGTGTGT
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGACACTGTGTGT
* * * ** *
4724693 GCAAACTTAAAAAATTCGTAATAAGTTAATGAATTTTTGTATTGG
66 GCAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
* * * *
4724738 CACTATGTGTGC-AACCTAAGAAATTCATAATAAGTTTATGAATTTCCGTAT-TAGCAATGTGTG
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGA-CACTGTGTG
4724801 TGCAA
65 TGCAA
4724806 CCCCACGTAA
Statistics
Matches: 366, Mismatches: 28, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
109 159 0.43
110 63 0.17
111 114 0.31
112 30 0.08
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (110 bp):
CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGACACTGTGTGT
GCAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
Found at i:4724686 original size:164 final size:164
Alignment explanation
Indices: 4724297--4724805 Score: 754
Period size: 164 Copynumber: 3.1 Consensus size: 164
4724287 TACCGAATGA
* *
4724297 CACTATGTGTGC-AAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGACACTGTGTG
1 CACTGTGTGTGCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTG
*
4724361 TGCAAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCATATGGGCACTGTGTGTGCAAAACT
65 TGCAAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTAT-GGCACTGTGTGTGC-AAACT
* * *
4724426 AAAAAATTCATAATAAGTTTATGAATTTTTCGTATGGA
128 AAGAAATTCATAATAAGTTTATGAA-TTTCCGTATGGG
* * *
4724464 CACCGTGTGTACAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTAAGGGCACTGTGTGT
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGT
*
4724529 GCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGACATTGTGTGTGCAAACTAA
66 GCAAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGG-CACTGTGTGTGCAAACTAA
4724593 GAAATTCATAATAAGTTTATGAATTTCCGTATGGG
130 GAAATTCATAATAAGTTTATGAATTTCCGTATGGG
*
4724628 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCTTATGGGCACTGTGTGT
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGT
* * * ** * *
4724693 GC-AAACTTAAAAAATTCGTAATAAGTTAATGAATTTTTGTATTGGCACTATGTGTGCAACCTAA
66 GCAAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTA-TGGCACTGTGTGTGCAAACTAA
**
4724757 GAAATTCATAATAAGTTTATGAATTTCCGTATTAG
130 GAAATTCATAATAAGTTTATGAATTTCCGTATGGG
*
4724792 CAATGTGTGTGCAA
1 CACTGTGTGTGCAA
4724806 CCCCACGTAA
Statistics
Matches: 313, Mismatches: 25, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
163 4 0.01
164 164 0.52
165 34 0.11
166 45 0.14
167 62 0.20
168 4 0.01
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (164 bp):
CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGT
GCAAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGCACTGTGTGTGCAAACTAAG
AAATTCATAATAAGTTTATGAATTTCCGTATGGG
Found at i:4724836 original size:55 final size:55
Alignment explanation
Indices: 4724297--4724805 Score: 747
Period size: 55 Copynumber: 9.3 Consensus size: 55
4724287 TACCGAATGA
* *
4724297 CACTATGTGTGC-AAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGA
1 CACTGTGTGTGCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
*
4724352 CACTGTGTGTGCAAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCATATGGG
1 CACTGTGTGTGCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
* * *
4724408 CACTGTGTGTGCAAAACTAAAAAATTCATAATAAGTTTATGAATTTTTCGTATGGA
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAA-TTTCCGTATGGG
* * *
4724464 CACCGTGTGTACAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTAAGGG
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
*
4724519 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGA
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
*
4724574 CATTGTGTGTGC-AAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
*
4724628 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCTTATGGG
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
* * * ** *
4724683 CACTGTGTGTGC-AAACTTAAAAAATTCGTAATAAGTTAATGAATTTTTGTATTGG
1 CACTGTGTGTGCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
* * **
4724738 CACTATGTGTGC-AACCTAAGAAATTCATAATAAGTTTATGAATTTCCGTATTAG
1 CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
*
4724792 CAATGTGTGTGCAA
1 CACTGTGTGTGCAA
4724806 CCCCACGTAA
Statistics
Matches: 411, Mismatches: 38, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
54 98 0.24
55 206 0.50
56 107 0.26
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (55 bp):
CACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGG
Found at i:4726524 original size:17 final size:17
Alignment explanation
Indices: 4726502--4726540 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
4726492 TGAATCAAAT
4726502 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
4726519 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
4726536 -AATTA
1 TAATTA
4726541 ATTGTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Found at i:4730626 original size:55 final size:55
Alignment explanation
Indices: 4730467--4730978 Score: 600
Period size: 55 Copynumber: 9.3 Consensus size: 55
4730457 ATTACCAAAT
* * *
4730467 GGCACTATGCGTGC-AAACTTAAGAAATTCATAGTAAGTTTATGAATTTCCGTATG
1 GGCACTGTGTGTGCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
4730522 GGCACTGTGTGTGCAAAACTTAAGAAATTCATAATAAGTTTATGAATTTCCATATG
1 GGCACTGTGTGTGCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* **
4730578 GACACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTATATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * *
4730633 GGCGCTGTGTTTGCAAAACTAAGAAATTCATATTAAGTTTATGAATTTCCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
4730688 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* **
4730743 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGATTTTTTGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * * ** * *
4730798 CGCACTGTGAGTG-TAAACTTAAGAAATTCGCAATAAGTTTATGAATTTTCGTATT
1 GGCACTGTGTGTGCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*** * * * *
4730853 AAAACTATGTGTGC-AACCTAAGAAATTCATAATAAGTTTATGAATTTCTGTATT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * ** * * * * * *
4730907 GACAATGTGTGTGCAACCCCACGTAATTCATAATAGGTTTGTGAATTAT-CGTATT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATT-TCCGTATG
**
4730962 GGCACTACGTGTGCAAA
1 GGCACTGTGTGTGCAAA
4730979 CTATAGAGTT
Statistics
Matches: 400, Mismatches: 52, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
54 46 0.12
55 296 0.74
56 58 0.14
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.35
Consensus pattern (55 bp):
GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
Found at i:4733822 original size:9 final size:9
Alignment explanation
Indices: 4733796--4733826 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
4733786 ATTGGTTTTT
4733796 TATAATATA
1 TATAATATA
4733805 TATAA-ATA
1 TATAATATA
4733813 TATAATATA
1 TATAATATA
4733822 TATAA
1 TATAA
4733827 CACTTACCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
TATAATATA
Found at i:4736971 original size:22 final size:22
Alignment explanation
Indices: 4736943--4737000 Score: 116
Period size: 22 Copynumber: 2.6 Consensus size: 22
4736933 CAAACCATTC
4736943 AGGGGGGAATCGGTACCCCCTT
1 AGGGGGGAATCGGTACCCCCTT
4736965 AGGGGGGAATCGGTACCCCCTT
1 AGGGGGGAATCGGTACCCCCTT
4736987 AGGGGGGAATCGGT
1 AGGGGGGAATCGGT
4737001 TCCCTCTGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.19, C:0.22, G:0.41, T:0.17
Consensus pattern (22 bp):
AGGGGGGAATCGGTACCCCCTT
Found at i:4739699 original size:20 final size:22
Alignment explanation
Indices: 4739653--4739710 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 22
4739643 TTCCCCTGTG
*
4739653 GGGGGAAACGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCCTTCAAA
4739676 GGGGGAATCGGTTCCC-TC-AA
1 GGGGGAATCGGTTCCCTTCAAA
* *
4739696 GGGGGGATCGATTCC
1 GGGGGAATCGGTTCC
4739711 ATCTGCACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.47
21 2 0.06
22 3 0.09
23 12 0.38
ACGTcount: A:0.21, C:0.24, G:0.36, T:0.19
Consensus pattern (22 bp):
GGGGGAATCGGTTCCCTTCAAA
Found at i:4747447 original size:13 final size:13
Alignment explanation
Indices: 4747429--4747455 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4747419 CCATCCAACT
4747429 ATTTATATGCTTC
1 ATTTATATGCTTC
4747442 ATTTATATGCTTC
1 ATTTATATGCTTC
4747455 A
1 A
4747456 ACCAAGCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (13 bp):
ATTTATATGCTTC
Found at i:4748032 original size:11 final size:11
Alignment explanation
Indices: 4748003--4748034 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
4747993 TTAATTTTAC
4748003 AAATATAAAAA
1 AAATATAAAAA
4748014 AAAT-TAAAAA
1 AAATATAAAAA
4748024 AAATATAAAAA
1 AAATATAAAAA
4748035 TTCTGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AAATATAAAAA
Found at i:4748092 original size:25 final size:25
Alignment explanation
Indices: 4748064--4748122 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
4748054 ATTAGTATGA
4748064 TTATTTATC-TAATTTAAATATATTT
1 TTATTTATCTTAATTT-AATATATTT
*
4748089 TTATCTATCTTATAATTTAATATATTT
1 TTATTTATC-T-TAATTTAATATATTT
*
4748116 TAATTTA
1 TTATTTA
4748123 AAAAAATGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 8 0.29
27 14 0.50
28 6 0.21
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (25 bp):
TTATTTATCTTAATTTAATATATTT
Found at i:4749687 original size:27 final size:27
Alignment explanation
Indices: 4749649--4749700 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
4749639 CAGACTAGCT
4749649 TTGTCCCGGGAAGGAATATAGCGAATA
1 TTGTCCCGGGAAGGAATATAGCGAATA
* * *
4749676 TTGTTCCGGGAAGGACTGTAGCGAA
1 TTGTCCCGGGAAGGAATATAGCGAA
4749701 CAATATTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.23
Consensus pattern (27 bp):
TTGTCCCGGGAAGGAATATAGCGAATA
Found at i:4753127 original size:27 final size:28
Alignment explanation
Indices: 4753067--4753143 Score: 120
Period size: 27 Copynumber: 2.8 Consensus size: 28
4753057 CGACCCGACC
4753067 CGGTGATATTTTGGGAATTATTTTTAAAA
1 CGGTGATATTTTGGGAATT-TTTTTAAAA
*
4753096 TGGTGATATTTTGGGAATTTTTTT-AAA
1 CGGTGATATTTTGGGAATTTTTTTAAAA
*
4753123 CGGTGATATTTTGGTAATTTT
1 CGGTGATATTTTGGGAATTTT
4753144 CGAATGTGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 22 0.49
28 5 0.11
29 18 0.40
ACGTcount: A:0.26, C:0.03, G:0.22, T:0.49
Consensus pattern (28 bp):
CGGTGATATTTTGGGAATTTTTTTAAAA
Found at i:4754124 original size:25 final size:25
Alignment explanation
Indices: 4754072--4754124 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
4754062 AGGGTAACTC
*
4754072 TTTTATGAGATTTACTGCAGTATAA
1 TTTTATGAGATTTACTGCACTATAA
* *
4754097 TTTTATGAGATTTACTGGACTATGA
1 TTTTATGAGATTTACTGCACTATAA
4754122 TTT
1 TTT
4754125 GTTTAGTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (25 bp):
TTTTATGAGATTTACTGCACTATAA
Found at i:4760591 original size:27 final size:28
Alignment explanation
Indices: 4760530--4760608 Score: 124
Period size: 27 Copynumber: 2.8 Consensus size: 28
4760520 GTGACCCGAC
*
4760530 ACGGTGATATTTTGAGAATTATTTTTAAA
1 ACGGTGATATTTTGGGAATT-TTTTTAAA
*
4760559 ATGGTGATATTTTGGGAATTTTTTT-AA
1 ACGGTGATATTTTGGGAATTTTTTTAAA
4760586 ACGGTGATATTTTGGGAATTTTT
1 ACGGTGATATTTTGGGAATTTTT
4760609 GAATTTGGAC
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 24 0.51
28 5 0.11
29 18 0.38
ACGTcount: A:0.28, C:0.03, G:0.22, T:0.48
Consensus pattern (28 bp):
ACGGTGATATTTTGGGAATTTTTTTAAA
Found at i:4761436 original size:34 final size:30
Alignment explanation
Indices: 4761398--4761466 Score: 95
Period size: 30 Copynumber: 2.2 Consensus size: 30
4761388 TTGATATAAC
4761398 AATTTAAGGCAAAATGGTTTTTGGACTTGAATTG
1 AATTTAA--CAAAAT-GTTTTTGGACTT-AATTG
4761432 AATTT-ACAAAATGTTTTTGGACTTAATTG
1 AATTTAACAAAATGTTTTTGGACTTAATTG
4761461 AATTTA
1 AATTTA
4761467 TTCAAAGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
29 10 0.29
30 12 0.35
31 6 0.18
33 1 0.03
34 5 0.15
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (30 bp):
AATTTAACAAAATGTTTTTGGACTTAATTG
Found at i:4761477 original size:29 final size:30
Alignment explanation
Indices: 4761407--4761466 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
4761397 CAATTTAAGG
4761407 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAAT-GTTTTTGGACTTGAATTGAATTTA
4761438 CAAAATGTTTTTGGACTT-AATTGAATTTA
1 CAAAATGTTTTTGGACTTGAATTGAATTTA
4761467 TTCAAAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 12 0.41
31 6 0.21
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (30 bp):
CAAAATGTTTTTGGACTTGAATTGAATTTA
Found at i:4761572 original size:21 final size:21
Alignment explanation
Indices: 4761546--4761601 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
4761536 AGGGTGTCAA
4761546 AGTGCATCCATGCATCCCTAC
1 AGTGCATCCATGCATCCCTAC
* * *
4761567 AGTGCATCTATTCATCCCTGC
1 AGTGCATCCATGCATCCCTAC
4761588 AGTGCATCCATGCA
1 AGTGCATCCATGCA
4761602 CATGCACTGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.34, G:0.16, T:0.27
Consensus pattern (21 bp):
AGTGCATCCATGCATCCCTAC
Found at i:4761616 original size:22 final size:22
Alignment explanation
Indices: 4761589--4761666 Score: 117
Period size: 22 Copynumber: 3.6 Consensus size: 22
4761579 CATCCCTGCA
4761589 GTGCATCCATGCACATGCACTG
1 GTGCATCCATGCACATGCACTG
4761611 GTGCATCCATGCACATGCACTG
1 GTGCATCCATGCACATGCACTG
*
4761633 GTGCATCGATGCATCATGCA---
1 GTGCATCCATGCA-CATGCACTG
4761653 GTGCATCCATGCAC
1 GTGCATCCATGCAC
4761667 TCAAACACCG
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
19 1 0.02
20 12 0.23
22 34 0.64
23 6 0.11
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (22 bp):
GTGCATCCATGCACATGCACTG
Found at i:4761713 original size:20 final size:20
Alignment explanation
Indices: 4761688--4761754 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
4761678 ATGCAATTAG
* *
4761688 TGCATCGATGCATCCTTCTA
1 TGCATCGATGCATCCTGCCA
**
4761708 TGCATCGATGCATCAAGGCCA
1 TGCATCGATGCATC-CTGCCA
4761729 TGCATCGATGCATCCTGCCA
1 TGCATCGATGCATCCTGCCA
4761749 TGCATC
1 TGCATC
4761755 CATGTATCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
20 24 0.60
21 16 0.40
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.27
Consensus pattern (20 bp):
TGCATCGATGCATCCTGCCA
Found at i:4761733 original size:21 final size:21
Alignment explanation
Indices: 4761707--4761767 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
4761697 GCATCCTTCT
4761707 ATGCATCGATGCATCAAGGCC
1 ATGCATCGATGCATCAAGGCC
**
4761728 ATGCATCGATGCATC-CTGCC
1 ATGCATCGATGCATCAAGGCC
* *
4761748 ATGCATCCATGTATCAAGGC
1 ATGCATCGATGCATCAAGGC
4761768 TGCAACAGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (21 bp):
ATGCATCGATGCATCAAGGCC
Found at i:4761735 original size:41 final size:41
Alignment explanation
Indices: 4761688--4761767 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
4761678 ATGCAATTAG
* * *
4761688 TGCATCGATGCATCCTTCTATGCATCGATGCATCAAGGCCA
1 TGCATCGATGCATCCTGCCATGCATCCATGCATCAAGGCCA
*
4761729 TGCATCGATGCATCCTGCCATGCATCCATGTATCAAGGC
1 TGCATCGATGCATCCTGCCATGCATCCATGCATCAAGGC
4761768 TGCAACAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (41 bp):
TGCATCGATGCATCCTGCCATGCATCCATGCATCAAGGCCA
Found at i:4762166 original size:34 final size:32
Alignment explanation
Indices: 4762127--4762196 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 32
4762117 TTTTGTAAAG
* *
4762127 GGGAAAGGTTCTAGCTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
* *
4762161 GGGAAATGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
4762193 GGGA
1 GGGA
4762197 GTTGTAAGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 11 0.34
33 1 0.03
34 20 0.62
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:4764935 original size:34 final size:30
Alignment explanation
Indices: 4764897--4764965 Score: 95
Period size: 30 Copynumber: 2.2 Consensus size: 30
4764887 TTGATATAAC
4764897 AATTTAAGGCAAAATGGTTTTTGGACTTGAATTG
1 AATTTAA--CAAAAT-GTTTTTGGACTT-AATTG
4764931 AATTT-ACAAAATGTTTTTGGACTTAATTG
1 AATTTAACAAAATGTTTTTGGACTTAATTG
4764960 AATTTA
1 AATTTA
4764966 TTCAAAGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
29 10 0.29
30 12 0.35
31 6 0.18
33 1 0.03
34 5 0.15
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (30 bp):
AATTTAACAAAATGTTTTTGGACTTAATTG
Found at i:4764976 original size:29 final size:30
Alignment explanation
Indices: 4764906--4764965 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
4764896 CAATTTAAGG
4764906 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAAT-GTTTTTGGACTTGAATTGAATTTA
4764937 CAAAATGTTTTTGGACTT-AATTGAATTTA
1 CAAAATGTTTTTGGACTTGAATTGAATTTA
4764966 TTCAAAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 12 0.41
31 6 0.21
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (30 bp):
CAAAATGTTTTTGGACTTGAATTGAATTTA
Found at i:4765133 original size:20 final size:20
Alignment explanation
Indices: 4765045--4765162 Score: 139
Period size: 21 Copynumber: 5.7 Consensus size: 20
4765035 AGGGTGTCAA
*
4765045 AGTGCATCCATGCATCCCTGC
1 AGTGCATCCATGCAT-CATGC
*
4765066 AGTGCATCCATGCATCCCTGC
1 AGTGCATCCATGCAT-CATGC
4765087 AGTGCATCCATGCA-CATGCAC
1 AGTGCATCCATGCATCATG--C
* *
4765108 TAGTGCATCGATGCATCATGT
1 -AGTGCATCCATGCATCATGC
*
4765129 AGTGCATCGATGCATCATGC
1 AGTGCATCCATGCATCATGC
4765149 AGTGCATCCATGCA
1 AGTGCATCCATGCA
4765163 CTCAAACACC
Statistics
Matches: 88, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.03
20 32 0.36
21 36 0.41
22 13 0.15
23 4 0.05
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.25
Consensus pattern (20 bp):
AGTGCATCCATGCATCATGC
Found at i:4765339 original size:20 final size:22
Alignment explanation
Indices: 4765301--4765340 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
4765291 TTTGAGTAGA
4765301 AAAATCATCCCCAAACGGCTCC
1 AAAATCATCCCCAAACGGCTCC
4765323 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
4765341 ATATACAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.40, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCC
Found at i:4766051 original size:32 final size:31
Alignment explanation
Indices: 4765976--4766053 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
4765966 ACCTAATGTG
* *
4765976 ATTCTTAGGTAGGCTCTGCGACCCTGAGATC
1 ATTCTTAGGTAGGCCCTGCGACCCTAAGATC
** *
4766007 ATTCTCGGGTAGGCCCTGCGGCCCTAAGAT-
1 ATTCTTAGGTAGGCCCTGCGACCCTAAGATC
4766037 ATGTTCTTAGGTAGGCC
1 A--TTCTTAGGTAGGCC
4766054 TCACAGCCCC
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 1 0.03
31 25 0.66
32 12 0.32
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (31 bp):
ATTCTTAGGTAGGCCCTGCGACCCTAAGATC
Found at i:4766172 original size:25 final size:25
Alignment explanation
Indices: 4766120--4766172 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
4766110 AGGGTAACTC
*
4766120 TTTTATGAGATTTACTACAGTATAA
1 TTTTATGAGATTTACTACACTATAA
* *
4766145 TTTTATGAGATTTACTAGACTATGA
1 TTTTATGAGATTTACTACACTATAA
4766170 TTT
1 TTT
4766173 GTTTAGTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.13, T:0.47
Consensus pattern (25 bp):
TTTTATGAGATTTACTACACTATAA
Found at i:4769338 original size:51 final size:51
Alignment explanation
Indices: 4769243--4769354 Score: 143
Period size: 51 Copynumber: 2.2 Consensus size: 51
4769233 ACTACTAAAG
* * *** *
4769243 AAAATAATAATGAACTAAAGATAATTTTTTGTTTATATCCTAATTTCTAAT
1 AAAATAATAATAAACTAAAGATAATGTTTTAACTATATCCTAATTCCTAAT
* *
4769294 AAAATAATAATAAACTAAAGATAATGTTTTAACTCTATCTTAATTCCTAAT
1 AAAATAATAATAAACTAAAGATAATGTTTTAACTATATCCTAATTCCTAAT
*
4769345 AAATTAATAA
1 AAAATAATAA
4769355 ATATAATCCT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.39
Consensus pattern (51 bp):
AAAATAATAATAAACTAAAGATAATGTTTTAACTATATCCTAATTCCTAAT
Found at i:4778533 original size:50 final size:51
Alignment explanation
Indices: 4778458--4778571 Score: 153
Period size: 50 Copynumber: 2.3 Consensus size: 51
4778448 GTAACTACTA
* * * *
4778458 AATAAAATAATAATAAATTAAAGATAAT-TTTTTATTCTATCC-TAA-TTCAT
1 AATAAAATAATAACAAACTAAAGATAATGTTTTAACTCTA-CCTTAATTTC-T
4778508 AATAAAATAATAACAAACTAAAGATAATGTTTTAACTCTACCTTAATTTCT
1 AATAAAATAATAACAAACTAAAGATAATGTTTTAACTCTACCTTAATTTCT
4778559 AATAAAATAATAA
1 AATAAAATAATAA
4778572 ATCTAATCCT
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
50 28 0.49
51 26 0.46
52 3 0.05
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.37
Consensus pattern (51 bp):
AATAAAATAATAACAAACTAAAGATAATGTTTTAACTCTACCTTAATTTCT
Found at i:4779528 original size:25 final size:27
Alignment explanation
Indices: 4779486--4779535 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
4779476 AAAATATTAA
*
4779486 AAATATTTTTTATATTTTCAAAATTTC
1 AAATATTTTTTATATTTTAAAAATTTC
4779513 AAATA-TTTTTAT-TTTTAAAAATT
1 AAATATTTTTTATATTTTAAAAATT
4779536 ATTTTTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 7 0.32
27 5 0.23
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (27 bp):
AAATATTTTTTATATTTTAAAAATTTC
Found at i:4780515 original size:14 final size:14
Alignment explanation
Indices: 4780477--4780515 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
4780467 GCGTCCATAG
4780477 CGAGTGTTATTGGA
1 CGAGTGTTATTGGA
* *
4780491 CG-CTATTATTGGA
1 CGAGTGTTATTGGA
4780504 CGAGTGTTATTG
1 CGAGTGTTATTG
4780516 ATCGCGGATC
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.21, C:0.10, G:0.31, T:0.38
Consensus pattern (14 bp):
CGAGTGTTATTGGA
Found at i:4781493 original size:21 final size:20
Alignment explanation
Indices: 4781467--4781522 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 20
4781457 GCAGAAGCTG
4781467 AAGAAGAGACAG-AGATAAAAC
1 AAGAAGAGA-AGAAGA-AAAAC
*
4781488 AAGAAGAAGAAGAAGAAGAAC
1 AAGAAG-AGAAGAAGAAAAAC
4781509 AAGAAGAAGAAGAA
1 AAGAAG-AGAAGAA
4781523 TTTACACTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 26 0.81
22 6 0.19
ACGTcount: A:0.66, C:0.05, G:0.27, T:0.02
Consensus pattern (20 bp):
AAGAAGAGAAGAAGAAAAAC
Found at i:4781496 original size:3 final size:3
Alignment explanation
Indices: 4781488--4781522 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
4781478 GAGATAAAAC
*
4781488 AAG AAG AAG AAG AAG AAG AAC AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
4781523 TTTACACTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.69, C:0.03, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:4787416 original size:231 final size:231
Alignment explanation
Indices: 4787013--4787475 Score: 917
Period size: 231 Copynumber: 2.0 Consensus size: 231
4787003 GTTATTGATA
*
4787013 TCTATGGTAGGCAATAATTTCATTTTCTCAAGTATTTTGAGAGAGTTTATACCCACTTGGCTTAA
1 TCTATGGTAGGCAATAATTTCATTTTCTCAAGTATTTTGAGAGAGTTTATACCCACATGGCTTAA
4787078 TTTAGCATGCCATAAATAAATAGATTCACCAATATAACTAGAAGTATAAACTTTATTATTAACAT
66 TTTAGCATGCCATAAATAAATAGATTCACCAATATAACTAGAAGTATAAACTTTATTATTAACAT
4787143 TATTCATGGTCTCAACTACAAATAACCCCCCACTAAGATAGCCTTTTCCCACAAAGTTACCATTA
131 TATTCATGGTCTCAACTACAAATAACCCCCCACTAAGATAGCCTTTTCCCACAAAGTTACCATTA
4787208 TGAGTAAGCACAAACCTATCAGATTAAAACACAAGT
196 TGAGTAAGCACAAACCTATCAGATTAAAACACAAGT
4787244 TCTATGGTAGGCAATAATTTCATTTTCTCAAGTATTTTGAGAGAGTTTATACCCACATGGCTTAA
1 TCTATGGTAGGCAATAATTTCATTTTCTCAAGTATTTTGAGAGAGTTTATACCCACATGGCTTAA
4787309 TTTAGCATGCCATAAATAAATAGATTCACCAATATAACTAGAAGTATAAACTTTATTATTAACAT
66 TTTAGCATGCCATAAATAAATAGATTCACCAATATAACTAGAAGTATAAACTTTATTATTAACAT
4787374 TATTCATGGTCTCAACTACAAATAACCCCCCACTAAGATAGCCTTTTCCCACAAAGTTACCATTA
131 TATTCATGGTCTCAACTACAAATAACCCCCCACTAAGATAGCCTTTTCCCACAAAGTTACCATTA
4787439 TGAGTAAGCACAAACCTATCAGATTAAAACACAAGT
196 TGAGTAAGCACAAACCTATCAGATTAAAACACAAGT
4787475 T
1 T
4787476 TAATTCATGC
Statistics
Matches: 231, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
231 231 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (231 bp):
TCTATGGTAGGCAATAATTTCATTTTCTCAAGTATTTTGAGAGAGTTTATACCCACATGGCTTAA
TTTAGCATGCCATAAATAAATAGATTCACCAATATAACTAGAAGTATAAACTTTATTATTAACAT
TATTCATGGTCTCAACTACAAATAACCCCCCACTAAGATAGCCTTTTCCCACAAAGTTACCATTA
TGAGTAAGCACAAACCTATCAGATTAAAACACAAGT
Found at i:4794671 original size:18 final size:18
Alignment explanation
Indices: 4794645--4794690 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
4794635 AGACTAACCG
*
4794645 ACAAGACTCTGAACTATA
1 ACAATACTCTGAACTATA
4794663 ACAATACTCTGAACTATA
1 ACAATACTCTGAACTATA
4794681 ACAATACTCT
1 ACAATACTCT
4794691 TAGTATTCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (18 bp):
ACAATACTCTGAACTATA
Found at i:4799546 original size:20 final size:20
Alignment explanation
Indices: 4799520--4799571 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
4799510 TTTGTAATTT
*
4799520 TAGTATCGATACC-ACCCCG
1 TAGTATCGATACCAACCCTG
*
4799539 TGAGTATCAATACCAACCCTG
1 T-AGTATCGATACCAACCCTG
4799560 TAGTATCGATAC
1 TAGTATCGATAC
4799572 TCCCTTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 21 0.75
21 6 0.21
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (20 bp):
TAGTATCGATACCAACCCTG
Found at i:4800827 original size:19 final size:19
Alignment explanation
Indices: 4800803--4800840 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
4800793 GTAATCCTCC
*
4800803 TGGGCTTGTATTACACACT
1 TGGGCTTGGATTACACACT
4800822 TGGGCTTGGATTACACACT
1 TGGGCTTGGATTACACACT
4800841 GATCGGAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (19 bp):
TGGGCTTGGATTACACACT
Found at i:4801086 original size:111 final size:111
Alignment explanation
Indices: 4800942--4801164 Score: 446
Period size: 111 Copynumber: 2.0 Consensus size: 111
4800932 TCCCCTACCC
4800942 CTTTAAAAAGATAGAGCTGACCCCTGGGTCAACGCTGGAGCTACATCTTGAGCTTCTGGGCAATC
1 CTTTAAAAAGATAGAGCTGACCCCTGGGTCAACGCTGGAGCTACATCTTGAGCTTCTGGGCAATC
4801007 TCAAATAAAGTGATATAGGGAACCACAATGATAATAACCCTTGGAT
66 TCAAATAAAGTGATATAGGGAACCACAATGATAATAACCCTTGGAT
4801053 CTTTAAAAAGATAGAGCTGACCCCTGGGTCAACGCTGGAGCTACATCTTGAGCTTCTGGGCAATC
1 CTTTAAAAAGATAGAGCTGACCCCTGGGTCAACGCTGGAGCTACATCTTGAGCTTCTGGGCAATC
4801118 TCAAATAAAGTGATATAGGGAACCACAATGATAATAACCCTTGGAT
66 TCAAATAAAGTGATATAGGGAACCACAATGATAATAACCCTTGGAT
4801164 C
1 C
4801165 ACTTCTGGAA
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 112 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (111 bp):
CTTTAAAAAGATAGAGCTGACCCCTGGGTCAACGCTGGAGCTACATCTTGAGCTTCTGGGCAATC
TCAAATAAAGTGATATAGGGAACCACAATGATAATAACCCTTGGAT
Found at i:4810505 original size:17 final size:17
Alignment explanation
Indices: 4810483--4810536 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
4810473 AATGTTAATA
4810483 TTTAAATTTATTTTTAT
1 TTTAAATTTATTTTTAT
* * * *
4810500 TTTAAAGTTATTATGAA
1 TTTAAATTTATTTTTAT
* *
4810517 TTTATATTAATTTTTAT
1 TTTAAATTTATTTTTAT
4810534 TTT
1 TTT
4810537 TTATAAATAT
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTAAATTTATTTTTAT
Found at i:4811956 original size:41 final size:41
Alignment explanation
Indices: 4811905--4812002 Score: 101
Period size: 41 Copynumber: 2.4 Consensus size: 41
4811895 CCTCCTTCAT
* * * *
4811905 ATGCCAAGCCCACCAGTTTATATGCC-ATCCCG-CAGGGTTAC
1 ATGCCTAGCCC-CCAGGTTACATGCCTAGCCCGCCA-GGTTAC
* *
4811946 ATTCCTAGCCCGCAGGTTACATGCCTAGCCCGCCAGGTTAC
1 ATGCCTAGCCCCCAGGTTACATGCCTAGCCCGCCAGGTTAC
*
4811987 ATGCCTAGCCCGCAGG
1 ATGCCTAGCCCCCAGG
4812003 GTTTTATACC
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
40 11 0.23
41 35 0.73
42 2 0.04
ACGTcount: A:0.21, C:0.36, G:0.22, T:0.20
Consensus pattern (41 bp):
ATGCCTAGCCCCCAGGTTACATGCCTAGCCCGCCAGGTTAC
Found at i:4812005 original size:21 final size:20
Alignment explanation
Indices: 4811933--4812002 Score: 113
Period size: 21 Copynumber: 3.4 Consensus size: 20
4811923 TATATGCCAT
*
4811933 CCCGCAGGGTTACATTCCTAG
1 CCCGCA-GGTTACATGCCTAG
4811954 CCCGCAGGTTACATGCCTAG
1 CCCGCAGGTTACATGCCTAG
4811974 CCCGCCAGGTTACATGCCTAG
1 CCCG-CAGGTTACATGCCTAG
4811995 CCCGCAGG
1 CCCGCAGG
4812003 GTTTTATACC
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
20 21 0.45
21 26 0.55
ACGTcount: A:0.19, C:0.37, G:0.26, T:0.19
Consensus pattern (20 bp):
CCCGCAGGTTACATGCCTAG
Found at i:4812569 original size:32 final size:33
Alignment explanation
Indices: 4812522--4812614 Score: 118
Period size: 32 Copynumber: 2.8 Consensus size: 33
4812512 AAATGTTTTT
4812522 AAATACAAATTATATTATTCAAATTTAAAATAA
1 AAATACAAATTATATTATTCAAATTTAAAATAA
* * *
4812555 AAATA-AAATAATATTATTC-AATTTAAATTTA
1 AAATACAAATTATATTATTCAAATTTAAAATAA
* *
4812586 AAATATAAATTATAGTATTCGAAATTTAA
1 AAATACAAATTATATTATTC-AAATTTAA
4812615 CATTAAATTT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
31 15 0.29
32 25 0.48
33 5 0.10
34 7 0.13
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (33 bp):
AAATACAAATTATATTATTCAAATTTAAAATAA
Found at i:4813374 original size:127 final size:128
Alignment explanation
Indices: 4812989--4813611 Score: 1095
Period size: 127 Copynumber: 4.9 Consensus size: 128
4812979 AAGTTATTCA
* *
4812989 ACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGAGCAATGATAACATA-TCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
4813053 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCA--TG--TAGTGAAATAATAGGT
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
4813112 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
*
4813177 AACGAAATAATGGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
66 GACGAAATAAT-GGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
4813241 ACTGATATATCTAG-GTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
* * *
4813305 GACG-AATAATGGAAGGCGCCCCCCCCGGGAACGCGCCCTCATGTAAATAGTGAAATAATAGGT
66 GACGAAATAATGGAAGGCG-CGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
*
4813368 ACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
4813433 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTG-AATAATAGGT
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
4813495 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
4813560 GACGAAATAATGGAA-G-GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
66 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
4813612 CCGATTATAG
Statistics
Matches: 478, Mismatches: 12, Indels: 17
0.94 0.02 0.03
Matches are distributed among these distances:
123 57 0.12
124 15 0.03
125 64 0.13
126 10 0.02
127 152 0.32
128 136 0.28
129 44 0.09
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (128 bp):
ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
Found at i:4813440 original size:256 final size:253
Alignment explanation
Indices: 4812989--4813611 Score: 1089
Period size: 256 Copynumber: 2.5 Consensus size: 253
4812979 AAGTTATTCA
* *
4812989 ACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGAGCAATGATAACATA-TCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
4813053 GACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATG---TAGTGAAATAATAGGTACT
66 GACGAAATAATGGAAGGCGC-CCCCCGGGAACGCGCCTTCATGTAATAGTGAAATAATAGGTACT
4813115 GATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTAAC
130 GATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTAAC
4813180 GAAATAATGGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGT
195 GAAATAAT-GGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTG-AATAATAGGT
4813241 ACTGATATATCTAG-GTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
*
4813305 GACG-AATAATGGAAGGCGCCCCCCCCGGGAACGCGCCCTCATGTAAATAGTGAAATAATAGGTA
66 GACGAAATAATGGAAGGCG--CCCCCCGGGAACGCGCCTTCATGT-AATAGTGAAATAATAGGTA
* *
4813369 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
128 CTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTA
4813434 ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAATAATAGGT
193 ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAATAATAGGT
4813495 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
1 ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
4813560 GACGAAATAATGGAAGGCG-CCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
66 GACGAAATAATGGAAGGCGCCCCCCGGGAACGCGCCTTCATGT-AATAGTGAA
4813612 CCGATTATAG
Statistics
Matches: 355, Mismatches: 7, Indels: 17
0.94 0.02 0.04
Matches are distributed among these distances:
251 56 0.16
252 44 0.12
253 32 0.09
254 24 0.07
255 95 0.27
256 104 0.29
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (253 bp):
ACTGATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCT
GACGAAATAATGGAAGGCGCCCCCCGGGAACGCGCCTTCATGTAATAGTGAAATAATAGGTACTG
ATATATCTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTAACG
AAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAATAATAGGT
Found at i:4813690 original size:8 final size:8
Alignment explanation
Indices: 4813677--4813717 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
4813667 TCACAATCTT
4813677 TCAAATTC
1 TCAAATTC
4813685 TCAAATTC
1 TCAAATTC
* *
4813693 CCAAACTC
1 TCAAATTC
4813701 T-AAATTC
1 TCAAATTC
4813708 TCAAATTC
1 TCAAATTC
4813716 TC
1 TC
4813718 TGAAAAGAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:4817194 original size:261 final size:254
Alignment explanation
Indices: 4816729--4817203 Score: 862
Period size: 261 Copynumber: 1.8 Consensus size: 254
4816719 AACATTTTAA
4816729 TAACTGATAAATTAATAGATCGATAATCAAAATCAAAATACTTGAAACTTGATCTCTTACATTAT
1 TAACTGATAAATTAATAGATCGATAATCAAAATCAAAATACTTGAAACTTGATCTCTTACATTAT
4816794 AATCGAAACATTTTACATATATTATTAATTTATAATAATAATAAAAAAAACTATTTATTATAAAA
66 AATCGAAACATTTTACATATATTATTAATTTATAATAATAATAAAAAAAACTATTTATTATAAAA
4816859 CAAAATAGTGTCTGCTGAGTTGGCAAAGGCGCGTCCCCGGGGACGCGCCTTCCACACGTGGCATC
131 CAAAATAGTGTCTGCTGAGTTGGCAAAGGCGCGTCCCCGGGGACGCGCCTTCCACACGTGGCATC
4816924 CAACTCAGCG-AAAACACGGGTAAAGCGCGCCCCGGGGACGCGCTAACATTTAAATAAT
196 CAACTCAGCGAAAAACACGGGTAAAGCGCGCCCCGGGGACGCGCTAACATTTAAATAAT
*
4816982 TAACTGATAAAATTAATAGATCGATAATCAAAATCAAAATACTTGAAACTTGATAATTCTTACAT
1 TAACTGAT-AAATTAATAGATCGATAATCAAAATCAAAATACTTGAAACTTGAT--CTCTTACAT
4817047 TATAATCGAAACATTTTACATAATATATTATTAATTTATAATAATAATAAAAATAAACTATTTAT
63 TATAATCGAAACATTTTAC---ATATATTATTAATTTATAATAATAATAAAAA-AAACTATTTAT
4817112 TATAAAACAAAATAGGTGTCTGCTGAGTTGGCAAAGGCGCGTCCCCGGGGACGCGCCTTCCACAC
124 TATAAAACAAAATA-GTGTCTGCTGAGTTGGCAAAGGCGCGTCCCCGGGGACGCGCCTTCCACAC
4817177 GTGGCATCCAACTCAGCGAAAAACACG
188 GTGGCATCCAACTCAGCGAAAAACACG
4817204 TCAGAAAAGT
Statistics
Matches: 212, Mismatches: 1, Indels: 9
0.95 0.00 0.04
Matches are distributed among these distances:
253 8 0.04
254 45 0.21
256 27 0.13
259 31 0.15
260 25 0.12
261 68 0.32
262 8 0.04
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (254 bp):
TAACTGATAAATTAATAGATCGATAATCAAAATCAAAATACTTGAAACTTGATCTCTTACATTAT
AATCGAAACATTTTACATATATTATTAATTTATAATAATAATAAAAAAAACTATTTATTATAAAA
CAAAATAGTGTCTGCTGAGTTGGCAAAGGCGCGTCCCCGGGGACGCGCCTTCCACACGTGGCATC
CAACTCAGCGAAAAACACGGGTAAAGCGCGCCCCGGGGACGCGCTAACATTTAAATAAT
Found at i:4818816 original size:18 final size:18
Alignment explanation
Indices: 4818793--4818846 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
4818783 ATTCTTATAT
4818793 TTCTATCTTTATCTGAAA
1 TTCTATCTTTATCTGAAA
* *
4818811 TTCTATATTTATTTGAAA
1 TTCTATCTTTATCTGAAA
*
4818829 TTCTATCTTCATCT-AAA
1 TTCTATCTTTATCTGAAA
4818846 T
1 T
4818847 CAAAAAGTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
17 4 0.13
18 27 0.87
ACGTcount: A:0.30, C:0.15, G:0.04, T:0.52
Consensus pattern (18 bp):
TTCTATCTTTATCTGAAA
Found at i:4824356 original size:5 final size:5
Alignment explanation
Indices: 4824255--4824336 Score: 51
Period size: 5 Copynumber: 16.2 Consensus size: 5
4824245 ACACATTTCG
* ** * *
4824255 TTTTA TTTTTA TTTTTA TTTT- TTTTA TTTTTA GTAAA ATTTA TTTCA
1 TTTTA -TTTTA -TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
* * *
4824302 TTCTA -TTTA TTTTA TTTTA TTTTA TCTTA TCTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
4824337 CAGATACTCA
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
4 7 0.11
5 38 0.62
6 16 0.26
ACGTcount: A:0.22, C:0.05, G:0.01, T:0.72
Consensus pattern (5 bp):
TTTTA
Found at i:4828376 original size:19 final size:21
Alignment explanation
Indices: 4828354--4828392 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
4828344 TTTTAAGTAT
4828354 TTTA-ATTAGGATTT-TCTTC
1 TTTAGATTAGGATTTATCTTC
*
4828373 TTTAGTTTAGGATTTATCTT
1 TTTAGATTAGGATTTATCTT
4828393 TACCTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.59
Consensus pattern (21 bp):
TTTAGATTAGGATTTATCTTC
Found at i:4829253 original size:8 final size:8
Alignment explanation
Indices: 4829240--4829265 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
4829230 TAATTATTAT
4829240 TTATTTTA
1 TTATTTTA
4829248 TTATTTTA
1 TTATTTTA
4829256 TTATTTTA
1 TTATTTTA
4829264 TT
1 TT
4829266 CTTATCTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATTTTA
Found at i:4832658 original size:30 final size:32
Alignment explanation
Indices: 4832586--4832664 Score: 83
Period size: 32 Copynumber: 2.6 Consensus size: 32
4832576 TATCTCTCTG
* *
4832586 TCTCTG-TTGTTTCCTCGTCTCTCTCTATTCT
1 TCTCTGCTTTTTTGCTCGTCTCTCTCTATTCT
* * * *
4832617 TCTCTGTTTTTTTTCTCGTCTCTCTCTGTTGT
1 TCTCTGCTTTTTTGCTCGTCTCTCTCTATTCT
4832649 TCT-T-CTTTTTTGCTCG
1 TCTCTGCTTTTTTGCTCG
4832665 CAGATGGGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 10 0.24
31 7 0.17
32 24 0.59
ACGTcount: A:0.01, C:0.28, G:0.11, T:0.59
Consensus pattern (32 bp):
TCTCTGCTTTTTTGCTCGTCTCTCTCTATTCT
Found at i:4833051 original size:3 final size:3
Alignment explanation
Indices: 4833043--4833110 Score: 102
Period size: 3 Copynumber: 22.7 Consensus size: 3
4833033 GGCCCGTTTG
* *
4833043 TAA TAA TAA -AA TAA TAA TAA AAA TAA TAA TAA TAA TAA TCA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4833090 TAA TAA TAAA TAA TAA TAA TA
1 TAA TAA T-AA TAA TAA TAA TA
4833111 GTAAATGGAG
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.03
3 54 0.92
4 3 0.05
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:4833626 original size:112 final size:110
Alignment explanation
Indices: 4833424--4833776 Score: 439
Period size: 112 Copynumber: 3.2 Consensus size: 110
4833414 TAGAATTATG
* ** * *
4833424 CAAAAAGTTGAACAAGCTCTTCTTATTATGAA---CTTCTTCATCAGATGAGTTCTTCTCATTAT
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
* *
4833486 GAAC-CTTCTCTGGAAAAGCTGCTCCATCAAGTGATGAATTTGAG
66 GAACTCTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTGAA
4833530 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGACGAGTTCTTCTCAT
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGAT---GAGTTCTTCTCAT
* * * * * * *
4833595 TATGAACTCTAC-CTGGCAATGTTAATCCATCAAATGATGAATTTAAA
63 TATGAACTCTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTGAA
4833642 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAA--T-TTCTT-CTTCTTCAGATGAGTTCTTCTCA
*
4833707 TTATGAACT-TTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAA
62 TTATGAACTCTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTGAA
* *
4833755 CAAAAGGGTTAAACAAGTTCTT
1 CAAAA-GGTTGAACAAATTCTT
4833777 TAGATGAGTT
Statistics
Matches: 210, Mismatches: 24, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
106 28 0.13
109 13 0.06
112 81 0.39
113 57 0.27
114 15 0.07
115 5 0.02
116 11 0.05
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (110 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAGTTCTTCTCATTAT
GAACTCTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTGAA
Found at i:4833794 original size:87 final size:87
Alignment explanation
Indices: 4833685--4833860 Score: 239
Period size: 87 Copynumber: 2.0 Consensus size: 87
4833675 TTATTCTTCC
* * *
4833685 TTCTTCAGATGAGTTCTTCTCATTATGAACT-TTCTCTGGAAAAGCTGATCCATCAAGTGATGGA
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCCT-TGGAAAAGCTGATCCATCAAATGATGAA
4833749 TT-TGAACAAAAGGGTTAAACAAG
65 TTCT-AACAAAAGGGTTAAACAAG
* ****
4833772 TTCTTTAGATGAGTTCTTCTCATTATGAACTCTCCTTGGCGCTGCTGATCCATCAAATGATGAAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCCTTGGAAAAGCTGATCCATCAAATGATGAAT
*
4833837 TCTAGCAAAAGGGTTAAACAAG
66 TCTAACAAAAGGGTTAAACAAG
4833859 TT
1 TT
4833861 TTTCTTATTA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
87 74 0.95
88 4 0.05
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (87 bp):
TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCCTTGGAAAAGCTGATCCATCAAATGATGAAT
TCTAACAAAAGGGTTAAACAAG
Found at i:4833939 original size:201 final size:199
Alignment explanation
Indices: 4833582--4833976 Score: 605
Period size: 201 Copynumber: 2.0 Consensus size: 199
4833572 TTCAGATGAC
*
4833582 GAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTAATCCATCAAATGATGAATTTAAACAAAA
1 GAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCAAATGATGAATTTAAACAAAA
*
4833647 GGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
66 GGTTAAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
* *
4833712 AACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAACAAAAGGGTTAAACAAGTTCTT
131 AACTTTCTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGAACAAAA-GGTTAAACAAATTCTT
4833777 TAGAT
195 TAGAT
** * *
4833782 GAGTTCTTCTCATTATGAACTCT-CCTTGGCGCTGCTGATCCATCAAATGATGAATTCT-AGCAA
1 GAGTTCTTCTCATTATGAACTCTACC-TGGCAATGCTAATCCATCAAATGATGAATT-TAAACAA
* * * *
4833845 AAGGGTTAAACAAGTTTTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
64 AA-GGTTAAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
4833910 ATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTC
128 ATGAACTTTCTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGAACAAAAGGTTAAACAAATTC
4833975 TT
193 TT
4833977 CTCATTATGA
Statistics
Matches: 177, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
199 2 0.01
200 69 0.39
201 106 0.60
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (199 bp):
GAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTAATCCATCAAATGATGAATTTAAACAAAA
GGTTAAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
AACTTTCTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGAACAAAAGGTTAAACAAATTCTTT
AGAT
Found at i:4833966 original size:314 final size:310
Alignment explanation
Indices: 4833466--4834065 Score: 832
Period size: 314 Copynumber: 1.9 Consensus size: 310
4833456 CTTCTTCATC
* * *
4833466 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGCTCCATCAAGTGATGAATTTGAGC
1 AGATGAGTTCTTCTCATTATGAACCTCCTCTGGAAAAGCTGATCCATCAAATGATGAATTTGAGC
*
4833531 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGACGAGTTCTTCTCATT
66 AAAAGGTTAAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGAT-A-GAGTTCTTCTCATT
* *
4833596 ATGAACTCTACCTGGCAATGTTAATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTC
129 ATGAACTCTACCTGGCAAAGCTAATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTC
****
4833661 TTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAA
194 TTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCAAACTGGAA
4833726 AAGCTGATCCA-TCAAGTGATGGATTTGAACAAAAGGGTTAAACAAGTTCTTT
259 AAGCTGATCCATTCAA-TGATGGATTTGAACAAAAGGGTTAAACAAGTTCTTT
****
4833778 AGATGAGTTCTTCTCATTATGAACTCTCCT-TGGCGCTGCTGATCCATCAAATGATGAATTCT-A
1 AGATGAGTTCTTCTCATTATGAAC-CTCCTCTGGAAAAGCTGATCCATCAAATGATGAATT-TGA
* * *
4833841 GCAAAAGGGTTAAACAAGTTTTTCTTATTATGAACTTCTTCTTCCTTCTTCAGAT-GAGTTCTTC
64 GCAAAA-GGTTAAACAAATTCTTCTCATTATGAA--T-TTCTT-CTTCTTCAGATAGAGTTCTTC
* * * * *
4833905 TCATTATGAACT-TTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAAC
124 TCATTATGAACTCTAC-CTGGCAAAGCTAATCCATCAAATGATGAATTTAAACAAAAGGTTGAAC
* *
4833969 AAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCAAA
188 AAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCAAA
* *
4834034 CTGGAAAAGTTGATCCATTGAATGATGGATTT
253 CTGGAAAAGCTGATCCATTCAATGATGGATTT
4834066 AAATCTTTGC
Statistics
Matches: 253, Mismatches: 26, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
312 55 0.22
313 30 0.12
314 148 0.58
315 4 0.02
316 5 0.02
317 11 0.04
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (310 bp):
AGATGAGTTCTTCTCATTATGAACCTCCTCTGGAAAAGCTGATCCATCAAATGATGAATTTGAGC
AAAAGGTTAAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATAGAGTTCTTCTCATTAT
GAACTCTACCTGGCAAAGCTAATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTT
CTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCAAACTGGAAAA
GCTGATCCATTCAATGATGGATTTGAACAAAAGGGTTAAACAAGTTCTTT
Found at i:4834023 original size:113 final size:114
Alignment explanation
Indices: 4833772--4834030 Score: 362
Period size: 113 Copynumber: 2.3 Consensus size: 114
4833762 GTTAAACAAG
* *** *
4833772 TTCTTTAGATGAGTTCTTCTCATTATGAACTCTCCTTGGCGCTGCTGATCCATCAAATGATGAAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCCTTGGCAAAGCTAATCCATCAAATGATGAAT
* * *
4833837 TCTAGCAAAAGGGTTAAACAAGTTTTTCTTATTATGAACTTCTTCTTCC
66 TCTAGCAAAAGGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
* * *
4833886 TTCTTCAGATGAGTTCTTCTCATTATGAACT-TTCTCTGGCAAAGCTAATCCATCAAGTGATGGA
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCCT-TGGCAAAGCTAATCCATCAAATGATGAA
* *
4833950 TT-TGAGCAAAA-GGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCC
65 TTCT-AGCAAAAGGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
4833999 TTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTC
4834031 AAACTGGAAA
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
113 68 0.53
114 61 0.47
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (114 bp):
TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCCTTGGCAAAGCTAATCCATCAAATGATGAAT
TCTAGCAAAAGGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
Found at i:4834050 original size:113 final size:111
Alignment explanation
Indices: 4833772--4834066 Score: 342
Period size: 113 Copynumber: 2.6 Consensus size: 111
4833762 GTTAAACAAG
* ** *** *
4833772 TTCTTTAGATGAGTTCTTCTCATTATGAACTCTCCTTGGCGCTGCTGATCCATCAAATGATGAAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTCAAC-TGGCAAAGCTGATCCATC-AATGATGGAT
* * *
4833837 TCTAGCAAAAGGGTTAAACAAGTTTTTCTTATTATGAACTTCTTCTTCC
64 T-TAGCAAAAGGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
* *
4833886 TTCTTCAGATGAGTTCTTCTCATTATGAACTTTC-TCTGGCAAAGCTAATCCATCAAGTGATGGA
1 TTCTTCAGATGAGTTCTTCTCATTATGAAC--TCAACTGGCAAAGCTGATCCATCAA-TGATGGA
* *
4833950 TTTGAGCAAAA-GGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCC
63 TTT-AGCAAAAGGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
* * *
4833999 TTCTTCAGATGAGTTCTTCTCATTATGAACTCAAACTGGAAAAGTTGATCCATTGAATGATGGAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTC-AACTGGCAAAGCTGATCCA-TCAATGATGGAT
4834064 TTA
64 TTA
4834067 AATCTTTGCT
Statistics
Matches: 157, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
111 2 0.01
112 1 0.01
113 90 0.57
114 61 0.39
115 1 0.01
116 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (111 bp):
TTCTTCAGATGAGTTCTTCTCATTATGAACTCAACTGGCAAAGCTGATCCATCAATGATGGATTT
AGCAAAAGGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCC
Found at i:4834942 original size:83 final size:83
Alignment explanation
Indices: 4834795--4835270 Score: 837
Period size: 83 Copynumber: 5.7 Consensus size: 83
4834785 TGTTCCTACT
* *
4834795 AAACCAGATCAGATAACTCAAATAACACTTCCAGAAGATGCTATGAGCATATT-ACTCTTCCAAA
1 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCA-TCTTTCAAA
* *
4834859 TTCAATGATTGGTTCTGCC
65 TTCAATGATTGGTTTTACC
* *
4834878 AAACTAGATCAGATAACTCAAATAACACTTCCAGAAGATGCTATGAGCATATTCATCTTTCAAAT
1 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCATCTTTCAAAT
4834943 TCAATGATTGGTTTTACC
66 TCAATGATTGGTTTTACC
4834961 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCATCTTTCAAAT
1 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCATCTTTCAAAT
4835026 TCAATGATTGGTTTTACC
66 TCAATGATTGGTTTTACC
* *
4835044 AAACCAGATCAGATAACTCAAAGGACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCAAAT
1 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCATCTTTCAAAT
4835109 TCAATGATTGGTTTTACC
66 TCAATGATTGGTTTTACC
4835127 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCATCTTTCAAAT
1 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCATCTTTCAAAT
4835192 TCAATGATTGGTTTTACC
66 TCAATGATTGGTTTTACC
* * *
4835210 AAACCAGATCAGATAACTCAAAGGACACTTTCAGAAGATGCTATGAGCACATTCATCTTTC
1 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCATCTTTC
4835271 CAGCTAATGT
Statistics
Matches: 379, Mismatches: 13, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
83 378 1.00
84 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.28
Consensus pattern (83 bp):
AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCATCTTTCAAAT
TCAATGATTGGTTTTACC
Found at i:4836420 original size:9 final size:9
Alignment explanation
Indices: 4836406--4836471 Score: 57
Period size: 9 Copynumber: 7.4 Consensus size: 9
4836396 TGACCCCCCC
4836406 CTTTTTCTT
1 CTTTTTCTT
4836415 CTTTTTTCTCT
1 C-TTTTTCT-T
* *
4836426 TTTTTTTTT
1 CTTTTTCTT
*
4836435 CTTTTTTTT
1 CTTTTTCTT
4836444 CTTTTTCTT
1 CTTTTTCTT
*
4836453 -TCTTTC-T
1 CTTTTTCTT
4836460 -TTTTTCTT
1 CTTTTTCTT
4836468 CTTT
1 CTTT
4836472 CCTTCAAGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
7 6 0.13
8 6 0.13
9 21 0.45
10 13 0.28
11 1 0.02
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (9 bp):
CTTTTTCTT
Found at i:4836422 original size:10 final size:10
Alignment explanation
Indices: 4836407--4836471 Score: 62
Period size: 10 Copynumber: 6.2 Consensus size: 10
4836397 GACCCCCCCC
4836407 TTTTTCTTCT
1 TTTTTCTTCT
4836417 TTTTTC-TCTT
1 TTTTTCTTC-T
*
4836427 TTTTTTTTCT
1 TTTTTCTTCT
4836437 TTTTT-TTCTTT
1 TTTTTCTTC--T
4836448 TTCTTTCTTTCT
1 TT-TTTC-TTCT
4836460 TTTTTCTTCT
1 TTTTTCTTCT
4836470 TT
1 TT
4836472 CCTTCAAGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
9 5 0.11
10 24 0.51
11 9 0.19
12 6 0.13
14 3 0.06
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTCTTCT
Found at i:4836434 original size:23 final size:23
Alignment explanation
Indices: 4836406--4836471 Score: 84
Period size: 21 Copynumber: 3.0 Consensus size: 23
4836396 TGACCCCCCC
4836406 CTTTTTCTTCTTTTTTCTCTTTT
1 CTTTTTCTTCTTTTTTCTCTTTT
*
4836429 TTTTTTCTT-TTTTTTCT-TTTT
1 CTTTTTCTTCTTTTTTCTCTTTT
*
4836450 CTTTCT-TTCTTTTTTCTTCTTT
1 CTTTTTCTTCTTTTTTC-TCTTT
4836472 CCTTCAAGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 2 0.05
21 15 0.41
22 9 0.24
23 11 0.30
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (23 bp):
CTTTTTCTTCTTTTTTCTCTTTT
Found at i:4836443 original size:15 final size:15
Alignment explanation
Indices: 4836423--4836471 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
4836413 TTCTTTTTTC
4836423 TCTTTTTTTTTTCTT
1 TCTTTTTTTTTTCTT
4836438 T-TTTTTCTTTTTCTT
1 TCTTTTT-TTTTTCTT
*
4836453 TCTTTCTTTTTTC-T
1 TCTTTTTTTTTTCTT
4836467 TCTTT
1 TCTTT
4836472 CCTTCAAGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 11 0.35
15 16 0.52
16 4 0.13
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TCTTTTTTTTTTCTT
Found at i:4836469 original size:14 final size:14
Alignment explanation
Indices: 4836413--4836472 Score: 68
Period size: 14 Copynumber: 4.2 Consensus size: 14
4836403 CCCCTTTTTC
4836413 TTCTTTTTTC-TCT
1 TTCTTTTTTCTTCT
* *
4836426 TTTTTTTTTCTTTT
1 TTCTTTTTTCTTCT
*
4836440 TTTTCTTTTTCTTTCT
1 TTCT-TTTTTC-TTCT
4836456 TTCTTTTTTCTTCT
1 TTCTTTTTTCTTCT
4836470 TTC
1 TTC
4836473 CTTCAAGCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
13 9 0.22
14 13 0.32
15 12 0.30
16 6 0.15
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TTCTTTTTTCTTCT
Found at i:4843772 original size:15 final size:15
Alignment explanation
Indices: 4843749--4843780 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4843739 TGAAATGAAT
4843749 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
4843764 AATGCATGTATGCAA
1 AATGAATGTATGCAA
4843779 AA
1 AA
4843781 AAGGTATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:4848833 original size:32 final size:32
Alignment explanation
Indices: 4848779--4848852 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 32
4848769 TCTCTCTCTG
*
4848779 TCTCTG-TTGTTTCCTCGTCTCTCTCTGTTCT
1 TCTCTGTTTTTTTCCTCGTCTCTCTCTGTTCT
* *
4848810 TCTCTGTTTTTTTTCTCGTCTCTCTCTGTTGT
1 TCTCTGTTTTTTTCCTCGTCTCTCTCTGTTCT
*
4848842 TCT-TCTTTTTT
1 TCTCTGTTTTTT
4848853 GCTCGCAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
31 13 0.34
32 25 0.66
ACGTcount: A:0.00, C:0.27, G:0.11, T:0.62
Consensus pattern (32 bp):
TCTCTGTTTTTTTCCTCGTCTCTCTCTGTTCT
Done.