Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000851.1 Hibiscus syriacus cultivar Beakdansim tig00001644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7304151
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 25 of 31
Found at i:5849238 original size:24 final size:24
Alignment explanation
Indices: 5849184--5849238 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
5849174 CGAAACTGTA
* *
5849184 ACATAGAAATTGTACCGAAGTGCT
1 ACATAGAAATTGCACCGAAGTGCC
*
5849208 ACGTAG-AATATGCACCGAAGTGCC
1 ACATAGAAAT-TGCACCGAAGTGCC
5849232 ACATAGA
1 ACATAGA
5849239 TTTGTCCTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 3 0.12
24 22 0.88
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (24 bp):
ACATAGAAATTGCACCGAAGTGCC
Found at i:5849269 original size:24 final size:24
Alignment explanation
Indices: 5849238--5849286 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
5849228 TGCCACATAG
*
5849238 ATTTGTCCTGAAGGACCGCGTAGA
1 ATTTGTCCCGAAGGACCGCGTAGA
5849262 ATTTGTCCCGAAGGACCGCGTAGA
1 ATTTGTCCCGAAGGACCGCGTAGA
5849286 A
1 A
5849287 CCCTCGACTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (24 bp):
ATTTGTCCCGAAGGACCGCGTAGA
Found at i:5855107 original size:24 final size:24
Alignment explanation
Indices: 5855075--5855123 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
5855065 TACCACATAG
5855075 ATTTTCCCCGAAAGACCGAGTAGA
1 ATTTTCCCCGAAAGACCGAGTAGA
* *
5855099 ATTTTCCCCGAAGGACCGCGTAGA
1 ATTTTCCCCGAAAGACCGAGTAGA
5855123 A
1 A
5855124 CCCTCGACTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (24 bp):
ATTTTCCCCGAAAGACCGAGTAGA
Found at i:5855246 original size:15 final size:15
Alignment explanation
Indices: 5855228--5855293 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
5855218 ATCTTTTATC
5855228 CACATAGAACACATT
1 CACATAGAACACATT
* **
5855243 CACATAGAGCAGTTT
1 CACATAGAACACATT
*
5855258 CACGTAGAACACATT
1 CACATAGAACACATT
*
5855273 CACATATAACA-AGTT
1 CACATAGAACACA-TT
5855288 CACATA
1 CACATA
5855294 CTAATAAAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
14 1 0.02
15 40 0.98
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.23
Consensus pattern (15 bp):
CACATAGAACACATT
Found at i:5860126 original size:83 final size:83
Alignment explanation
Indices: 5860026--5860192 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
5860016 AGGACAAGTA
5860026 TGTTCCTTATGACCATGATAATGGCAATGTGAGAATTTTGCCATTTTTAAACATAATAAGTTGTT
1 TGTTCCTTATGACCATGATAATGGCAATGTGAGAATTTTGCCATTTTTAAACATAATAAGTTGTT
5860091 TTTAGAAATTAATCCTTT
66 TTTAGAAATTAATCCTTT
5860109 TGTTCCTTATGACCATGATAATGGCAATGTGAGAATTTTGCCATTTTTAAACATAATAAGTTGTT
1 TGTTCCTTATGACCATGATAATGGCAATGTGAGAATTTTGCCATTTTTAAACATAATAAGTTGTT
5860174 TTTAGAAATTAATCCTTT
66 TTTAGAAATTAATCCTTT
5860192 T
1 T
5860193 TTCTTTTGTT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (83 bp):
TGTTCCTTATGACCATGATAATGGCAATGTGAGAATTTTGCCATTTTTAAACATAATAAGTTGTT
TTTAGAAATTAATCCTTT
Found at i:5864245 original size:20 final size:20
Alignment explanation
Indices: 5864209--5864263 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
5864199 TTGCATTCTC
*
5864209 ATTTTGC-ATTAGCTTATTA
1 ATTTTGCTATTTGCTTATTA
5864228 ATTTTGCTATTTGCTTATTA
1 ATTTTGCTATTTGCTTATTA
*
5864248 ATTTTTCTATTTGCTT
1 ATTTTGCTATTTGCTT
5864264 CTATGATTGC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 7 0.21
20 26 0.79
ACGTcount: A:0.20, C:0.11, G:0.09, T:0.60
Consensus pattern (20 bp):
ATTTTGCTATTTGCTTATTA
Found at i:5865281 original size:22 final size:21
Alignment explanation
Indices: 5865249--5865301 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
5865239 GATTCAACCA
*
5865249 GTATCGGTACCCA-AGCAATGTG
1 GTATCGATACCCATAGCAA-G-G
*
5865271 GTATCGATA-CCATAGTAAGG
1 GTATCGATACCCATAGCAAGG
5865291 GTATCGATACC
1 GTATCGATACC
5865302 AGTAAACATC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 10 0.37
21 5 0.19
22 12 0.44
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (21 bp):
GTATCGATACCCATAGCAAGG
Found at i:5865985 original size:79 final size:78
Alignment explanation
Indices: 5865851--5866093 Score: 353
Period size: 79 Copynumber: 3.1 Consensus size: 78
5865841 ACTAATGAAA
5865851 AAAAGAATAATGCATATGGGGTGCATTAGTGGCATGAAAGGATGCCTTAGATGATATGTATATGG
1 AAAAGAATAATGCATAT-GGGTGCATTAGTGGCATGAAAGGATGCCTTAGATGATATGTATATGG
5865916 GTACATTATCGACAT
65 GTACATTATC-ACAT
*
5865931 AAAAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATGGG
1 AAAAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGATGATATGTATATGGG
5865996 TACATTATCAGCAT
66 TACATTATCA-CAT
* ** * * *
5866010 AACAA-AATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAGAGTTGAAATGCATATGG
1 AA-AAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGATGATATGTATATGG
* *
5866074 GTGCATTATCAACAG
65 GTACATTATC-ACAT
5866089 AAAAG
1 AAAAG
5866094 TATACTAGAG
Statistics
Matches: 150, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
78 3 0.02
79 127 0.85
80 20 0.13
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (78 bp):
AAAAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGATGATATGTATATGGG
TACATTATCACAT
Found at i:5866246 original size:91 final size:90
Alignment explanation
Indices: 5866055--5866273 Score: 341
Period size: 91 Copynumber: 2.4 Consensus size: 90
5866045 AAAGGATGCC
*
5866055 AGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATACTAGAGTTGAAATGCATATGGG
1 AGAGTTGAAATGCATATGGGTGCATTATCAATAGAAAAGTATACTAGAGTTGAAATGCATATGGG
*
5866120 TGCATTATCAACAGAAAAGTATACT
66 TACATTATCAACAGAAAAGTATACT
* * * *
5866145 AGAGTTGAAATGTATATGGGTACATTATCAATAGAAAAGTATACTATG-GTTTGAGATGTATATG
1 AGAGTTGAAATGCATATGGGTGCATTATCAATAGAAAAGTATACTA-GAG-TTGAAATGCATATG
*
5866209 GGTACATTATCAACATAAAAGTATACT
64 GGTACATTATCAACAGAAAAGTATACT
*
5866236 ATAGTTGAAATGCATATGGGTGCATTATCAATAGAAAA
1 AGAGTTGAAATGCATATGGGTGCATTATCAATAGAAAA
5866274 AATATTAGAG
Statistics
Matches: 117, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
90 44 0.38
91 73 0.62
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (90 bp):
AGAGTTGAAATGCATATGGGTGCATTATCAATAGAAAAGTATACTAGAGTTGAAATGCATATGGG
TACATTATCAACAGAAAAGTATACT
Found at i:5866292 original size:45 final size:45
Alignment explanation
Indices: 5866018--5866273 Score: 336
Period size: 45 Copynumber: 5.7 Consensus size: 45
5866008 ATAACAAAAT
*** * * *
5866018 AATGCATATGGGTGCATTATTGGCATG-AAAGGATGCCAGAGTTGA
1 AATGCATATGGGTGCATTATCAACA-GAAAAGTATACTAGAGTTGA
5866063 AATGCATATGGGTGCATTATCAACAGAAAAGTATACTAGAGTTGA
1 AATGCATATGGGTGCATTATCAACAGAAAAGTATACTAGAGTTGA
5866108 AATGCATATGGGTGCATTATCAACAGAAAAGTATACTAGAGTTGA
1 AATGCATATGGGTGCATTATCAACAGAAAAGTATACTAGAGTTGA
* * *
5866153 AATGTATATGGGTACATTATCAATAGAAAAGTATACTATG-GTTTGA
1 AATGCATATGGGTGCATTATCAACAGAAAAGTATACTA-GAG-TTGA
* * * * *
5866199 GATGTATATGGGTACATTATCAACATAAAAGTATACTATAGTTGA
1 AATGCATATGGGTGCATTATCAACAGAAAAGTATACTAGAGTTGA
*
5866244 AATGCATATGGGTGCATTATCAATAGAAAA
1 AATGCATATGGGTGCATTATCAACAGAAAA
5866274 AATATTAGAG
Statistics
Matches: 189, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
44 1 0.01
45 147 0.78
46 41 0.22
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (45 bp):
AATGCATATGGGTGCATTATCAACAGAAAAGTATACTAGAGTTGA
Found at i:5869312 original size:20 final size:20
Alignment explanation
Indices: 5869287--5869335 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
5869277 TGAAAAGATT
*
5869287 TAATAAAATAAAATA-GATAA
1 TAATAAAATAAAAAAGGA-AA
5869307 TAAT-AAATAAAAAAGGAAA
1 TAATAAAATAAAAAAGGAAA
5869326 TAATAAAATA
1 TAATAAAATA
5869336 GTAAATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.22
Consensus pattern (20 bp):
TAATAAAATAAAAAAGGAAA
Found at i:5876217 original size:17 final size:18
Alignment explanation
Indices: 5876195--5876233 Score: 71
Period size: 17 Copynumber: 2.2 Consensus size: 18
5876185 ATTTTAAAAA
5876195 ATTATGTTAAATG-AACT
1 ATTATGTTAAATGAAACT
5876212 ATTATGTTAAATGAAACT
1 ATTATGTTAAATGAAACT
5876230 ATTA
1 ATTA
5876234 CATGATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (18 bp):
ATTATGTTAAATGAAACT
Found at i:5877792 original size:17 final size:17
Alignment explanation
Indices: 5877754--5877792 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
5877744 TCCTATAAAG
* *
5877754 GAAAACTAAATAACGTA
1 GAAATCTAAATAAAGTA
5877771 GAAATCTAAATAAAGTA
1 GAAATCTAAATAAAGTA
*
5877788 TAAAT
1 GAAAT
5877793 ATACTTCAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.59, C:0.08, G:0.10, T:0.23
Consensus pattern (17 bp):
GAAATCTAAATAAAGTA
Found at i:5888131 original size:21 final size:18
Alignment explanation
Indices: 5888095--5888140 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
5888085 ACAATGAGGT
5888095 TGAACAAGAAGATTCTTC
1 TGAACAAGAAGATTCTTC
5888113 TGAACAAGAAGATTCTTC
1 TGAACAAGAAGATTCTTC
*
5888131 TGAAGAAGAA
1 TGAACAAGAA
5888141 CTAGCACATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (18 bp):
TGAACAAGAAGATTCTTC
Found at i:5893186 original size:144 final size:145
Alignment explanation
Indices: 5892997--5893287 Score: 539
Period size: 144 Copynumber: 2.0 Consensus size: 145
5892987 CCTCCGCCTC
5892997 TACTTTCTTCCATCAACAATCATCATGGAGTTCTGGGGTAAGCCCTTCTTTTCCTTTTCTTTTGT
1 TACTTTCTTCCATCAACAATCATCATGGAGTTCTGGGGTAAGCCCTTCTTTTCCTTTTCTTTTGT
* *
5893062 CACTTTTTGCTGC-TTCTTCCTACATTTTTAGTCTTTTATCTTTTATTATGCTTTGGGAAGCTGT
66 CACTCTTTGCTGCTTTCTTCCTACATTTTTAGTCTTTTATCCTTTATTATGCTTTGGGAAGCTGT
5893126 GATCATATATATATA
131 GATCATATATATATA
*
5893141 TACTTTCTTCCATTAACAATCATCATGGAGTTCTGGGGTAAGCCCTTCTTTTCCTTTTCTTTTGT
1 TACTTTCTTCCATCAACAATCATCATGGAGTTCTGGGGTAAGCCCTTCTTTTCCTTTTCTTTTGT
*
5893206 CACTCTTTGCTTCTTTCTTCCTACATTTTTAGTCTTTTATCCTTTATTATGCTTTGGGAAGCTGT
66 CACTCTTTGCTGCTTTCTTCCTACATTTTTAGTCTTTTATCCTTTATTATGCTTTGGGAAGCTGT
5893271 GATCATATATATATA
131 GATCATATATATATA
5893286 TA
1 TA
5893288 TATATTTGTT
Statistics
Matches: 142, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
144 75 0.53
145 67 0.47
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (145 bp):
TACTTTCTTCCATCAACAATCATCATGGAGTTCTGGGGTAAGCCCTTCTTTTCCTTTTCTTTTGT
CACTCTTTGCTGCTTTCTTCCTACATTTTTAGTCTTTTATCCTTTATTATGCTTTGGGAAGCTGT
GATCATATATATATA
Found at i:5894683 original size:33 final size:36
Alignment explanation
Indices: 5894641--5894726 Score: 106
Period size: 39 Copynumber: 2.4 Consensus size: 36
5894631 AGAAAGATGA
*
5894641 TGATGAAGATGACA-G-C-GAGGATGAAATTGATTC
1 TGATGAAGATGACACGTCTGAGGATGAAAGTGATTC
5894674 TGATGAAGATGACATCGATTCTGAGGATGAAAGTGATTC
1 TGATGAAGATGACA-CG--TCTGAGGATGAAAGTGATTC
*
5894713 TGAGGAAGATGACA
1 TGATGAAGATGACA
5894727 ACGATTCTGA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
33 14 0.31
35 1 0.02
38 1 0.02
39 29 0.64
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.24
Consensus pattern (36 bp):
TGATGAAGATGACACGTCTGAGGATGAAAGTGATTC
Found at i:5894684 original size:21 final size:20
Alignment explanation
Indices: 5894660--5894737 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 20
5894650 TGACAGCGAG
5894660 GATGAAATTGATTCTGATGAA
1 GATGAAATTGATTCTGA-GAA
* *
5894681 GATGACATCGATTCTGAG--
1 GATGAAATTGATTCTGAGAA
*
5894699 GATGAAAGTGATTCTGAGGAA
1 GATGAAATTGATTCTGA-GAA
*
5894720 GATGACAA-CGATTCTGAG
1 GATGA-AATTGATTCTGAG
5894738 GTTTCTCTTC
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
18 14 0.30
19 1 0.02
20 2 0.04
21 28 0.60
22 2 0.04
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (20 bp):
GATGAAATTGATTCTGAGAA
Found at i:5894700 original size:39 final size:39
Alignment explanation
Indices: 5894657--5894738 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
5894647 AGATGACAGC
* * *
5894657 GAGGATGAAATTGATTCTGATGAAGATGACATCGATTCT
1 GAGGATGAAAGTGATTCTGAGGAAGATGACAACGATTCT
5894696 GAGGATGAAAGTGATTCTGAGGAAGATGACAACGATTCT
1 GAGGATGAAAGTGATTCTGAGGAAGATGACAACGATTCT
5894735 GAGG
1 GAGG
5894739 TTTCTCTTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (39 bp):
GAGGATGAAAGTGATTCTGAGGAAGATGACAACGATTCT
Found at i:5894711 original size:18 final size:17
Alignment explanation
Indices: 5894657--5894718 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 17
5894647 AGATGACAGC
5894657 GAGGATGAAATTGATTCT
1 GAGGATGAAA-TGATTCT
*
5894675 GATGAAGATGACATCGATTCT
1 GA-G--GATGAAAT-GATTCT
5894696 GAGGATGAAAGTGATTCT
1 GAGGATGAAA-TGATTCT
5894714 GAGGA
1 GAGGA
5894719 AGATGACAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 19 0.51
19 2 0.05
20 2 0.05
21 14 0.38
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (17 bp):
GAGGATGAAATGATTCT
Found at i:5894738 original size:21 final size:21
Alignment explanation
Indices: 5894669--5894738 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
5894659 GGATGAAATT
* *
5894669 GATTCTGATGAAGATGACATC
1 GATTCTGAGGAAGATGACAAC
*
5894690 GATTCTGA-G--GATGA-AAGT
1 GATTCTGAGGAAGATGACAA-C
5894708 GATTCTGAGGAAGATGACAAC
1 GATTCTGAGGAAGATGACAAC
5894729 GATTCTGAGG
1 GATTCTGAGG
5894739 TTTCTCTTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
17 1 0.02
18 13 0.32
19 1 0.02
20 1 0.02
21 23 0.56
22 2 0.05
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (21 bp):
GATTCTGAGGAAGATGACAAC
Found at i:5896330 original size:24 final size:23
Alignment explanation
Indices: 5896302--5896346 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
5896292 TAGAATTTAT
*
5896302 GAACATGTTTATTTATATGTTCGC
1 GAACATATTTATTTA-ATGTTCGC
5896326 GAACATATTTATTTAATGTTC
1 GAACATATTTATTTAATGTTC
5896347 ATTTTATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (23 bp):
GAACATATTTATTTAATGTTCGC
Found at i:5896632 original size:38 final size:38
Alignment explanation
Indices: 5896606--5896693 Score: 167
Period size: 38 Copynumber: 2.3 Consensus size: 38
5896596 GAGTTTGTTT
5896606 GTGAATATAAACAAATGAGTTAATAGATGAGGTTGCCC
1 GTGAATATAAACAAATGAGTTAATAGATGAGGTTGCCC
*
5896644 GTGAATATAAACAAATGAGTTAATAGACGAGGTTGCCC
1 GTGAATATAAACAAATGAGTTAATAGATGAGGTTGCCC
5896682 GTGAATATAAAC
1 GTGAATATAAAC
5896694 TAACCTAATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (38 bp):
GTGAATATAAACAAATGAGTTAATAGATGAGGTTGCCC
Found at i:5896974 original size:40 final size:40
Alignment explanation
Indices: 5896919--5896999 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
5896909 TTTAGTGTAC
5896919 TTTAGCAAAGGATTAGGCCCTAAGCATCACAATCTTTCCA
1 TTTAGCAAAGGATTAGGCCCTAAGCATCACAATCTTTCCA
*
5896959 TTTAGCAAAGGATTAGGCCCTAATCATCACAATCTTTCCA
1 TTTAGCAAAGGATTAGGCCCTAAGCATCACAATCTTTCCA
5896999 T
1 T
5897000 CTATGACAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (40 bp):
TTTAGCAAAGGATTAGGCCCTAAGCATCACAATCTTTCCA
Found at i:5900702 original size:31 final size:31
Alignment explanation
Indices: 5900667--5900752 Score: 100
Period size: 31 Copynumber: 2.8 Consensus size: 31
5900657 AAAATTTATG
* *
5900667 TATTAAAATGAAATAAAAAATTAATAATAGA
1 TATTAAAATGAAATAAAAAATAAATAACAGA
* * *
5900698 TATTAAAATGAAACAAAAAATAAATAGCAGG
1 TATTAAAATGAAATAAAAAATAAATAACAGA
* * *
5900729 TACTAAAATAAAATAAAAAGTAAA
1 TATTAAAATGAAATAAAAAATAAA
5900753 CATTATATAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.23
Consensus pattern (31 bp):
TATTAAAATGAAATAAAAAATAAATAACAGA
Found at i:5905391 original size:57 final size:57
Alignment explanation
Indices: 5905320--5905435 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
5905310 TTACAACTGT
5905320 AGACACCTCATTTTTCCACCATGCTCCACTACAAGCACTATCTCCACCAACAATACA
1 AGACACCTCATTTTTCCACCATGCTCCACTACAAGCACTATCTCCACCAACAATACA
* *
5905377 AGACACCTCGTTTTTCCACCATGCTCCACTACAAGCGCTATCTCCACCAACAATACA
1 AGACACCTCATTTTTCCACCATGCTCCACTACAAGCACTATCTCCACCAACAATACA
5905434 AG
1 AG
5905436 TATAAGTGGA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.22
Consensus pattern (57 bp):
AGACACCTCATTTTTCCACCATGCTCCACTACAAGCACTATCTCCACCAACAATACA
Found at i:5911500 original size:41 final size:40
Alignment explanation
Indices: 5911459--5911588 Score: 131
Period size: 41 Copynumber: 3.2 Consensus size: 40
5911449 GAGAGTAAAT
* *
5911459 GCCACAAAATTTAAACATATAGCGGTGTTTACAATCCAAAT
1 GCCACAAAATTTAAACATATAGCGGCGTTTACAAT-CAAAC
* * * * *
5911500 GCCACAAAA-TGATAC-TTTAGCGGCGTTTTAGAGT-AAAC
1 GCCACAAAATTTAAACATATAGCGGCG-TTTACAATCAAAC
*
5911538 GCCACAAAATTTAAACATATAGAGGCGTTTACAATTCAAAC
1 GCCACAAAATTTAAACATATAGCGGCGTTTACAA-TCAAAC
*
5911579 GCCATAAAAT
1 GCCACAAAAT
5911589 GATACTTTAG
Statistics
Matches: 70, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
38 12 0.17
39 17 0.24
40 19 0.27
41 22 0.31
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (40 bp):
GCCACAAAATTTAAACATATAGCGGCGTTTACAATCAAAC
Found at i:5911588 original size:79 final size:79
Alignment explanation
Indices: 5911435--5911612 Score: 259
Period size: 79 Copynumber: 2.3 Consensus size: 79
5911425 TAGCGGTGTT
* * * * *
5911435 TTTAGCGGTGTTTAGAGAGTAAATGCCACAAAATTTAAACATATAGCGGTGTTTACAATCCAAAT
1 TTTAGCGGTGTTT-TAGAGTAAACGCCACAAAATTTAAACATATAGAGGCGTTTACAATCCAAAC
5911500 GCCACAAAATGATAC
65 GCCACAAAATGATAC
* *
5911515 TTTAGCGGCGTTTTAGAGTAAACGCCACAAAATTTAAACATATAGAGGCGTTTACAATTCAAACG
1 TTTAGCGGTGTTTTAGAGTAAACGCCACAAAATTTAAACATATAGAGGCGTTTACAATCCAAACG
*
5911580 CCATAAAATGATAC
66 CCACAAAATGATAC
*
5911594 TTTAGCAGTGTTTTA-AGTA
1 TTTAGCGGTGTTTTAGAGTA
5911613 TAAACGCTGC
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 4 0.05
79 72 0.82
80 12 0.14
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (79 bp):
TTTAGCGGTGTTTTAGAGTAAACGCCACAAAATTTAAACATATAGAGGCGTTTACAATCCAAACG
CCACAAAATGATAC
Found at i:5911637 original size:41 final size:42
Alignment explanation
Indices: 5911590--5911681 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 42
5911580 CCATAAAATG
** * * *
5911590 ATACTTTAGCAGTGTTTTAAGTATAAACGCTGCTAAA-ACTC
1 ATACTTTAGCAGCATTTTAAGCAAAAACACTGCTAAATACTC
* **
5911631 GTACTTTAGTGGCATTTTAAGCAAAAACACTGCTAAATACTC
1 ATACTTTAGCAGCATTTTAAGCAAAAACACTGCTAAATACTC
5911673 ATACTTTAG
1 ATACTTTAG
5911682 AGGTATTTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 29 0.71
42 12 0.29
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (42 bp):
ATACTTTAGCAGCATTTTAAGCAAAAACACTGCTAAATACTC
Found at i:5911828 original size:41 final size:41
Alignment explanation
Indices: 5911777--5911888 Score: 138
Period size: 41 Copynumber: 2.7 Consensus size: 41
5911767 GTGTTTATAT
*
5911777 AAAAATGCCACTAAA-TATGAGTCTTTAGCGGCGTTTGT-G
1 AAAAACGCCACTAAAGTATGAGTCTTTAGCGGCGTTTGTAG
* * *
5911816 CTTAAAACGCCACTAAATTACGAGTCTTTAGCGGCGTTTGTAG
1 --AAAAACGCCACTAAAGTATGAGTCTTTAGCGGCGTTTGTAG
* *
5911859 AAAAACGCCTCTAAAGTATGAGTATTTAGC
1 AAAAACGCCACTAAAGTATGAGTCTTTAGC
5911889 AGAATTTTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 38 0.62
42 22 0.36
43 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (41 bp):
AAAAACGCCACTAAAGTATGAGTCTTTAGCGGCGTTTGTAG
Found at i:5911841 original size:42 final size:41
Alignment explanation
Indices: 5911778--5911856 Score: 131
Period size: 42 Copynumber: 1.9 Consensus size: 41
5911768 TGTTTATATA
* *
5911778 AAAATGCCACTAAATATGAGTCTTTAGCGGCGTTTGTGCTT
1 AAAACGCCACTAAATACGAGTCTTTAGCGGCGTTTGTGCTT
5911819 AAAACGCCACTAAATTACGAGTCTTTAGCGGCGTTTGT
1 AAAACGCCACTAAA-TACGAGTCTTTAGCGGCGTTTGT
5911857 AGAAAAACGC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 13 0.37
42 22 0.63
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (41 bp):
AAAACGCCACTAAATACGAGTCTTTAGCGGCGTTTGTGCTT
Found at i:5915762 original size:43 final size:42
Alignment explanation
Indices: 5915708--5915970 Score: 296
Period size: 43 Copynumber: 6.2 Consensus size: 42
5915698 GTTTGTATTA
** *
5915708 AAAAACGCCGCTATATATCTGACCTTTTGCGGTATTTGTACCC
1 AAAAACGCCGCTATATATCTGACCTTTTGCGGCGTTTGT-TCC
* * *
5915751 AAAAACACCGCTAAATATCTAACCTTTTGCGGCGTTTGTTCC
1 AAAAACGCCGCTATATATCTGACCTTTTGCGGCGTTTGTTCC
* * * * *
5915793 AAAAACCCCGCTAAATATCTAAACTTTTGCGGCGTTTATTCC
1 AAAAACGCCGCTATATATCTGACCTTTTGCGGCGTTTGTTCC
*
5915835 AAAAATGCCGCTATAGATATC-GACCTTTTGCGGCGTTTGTTCC
1 AAAAACGCCGCTAT--ATATCTGACCTTTTGCGGCGTTTGTTCC
* * * *
5915878 ATAAACGCCGCTATAGATCTTGACCTTTTGCGACGTTTGTTCT
1 AAAAACGCCGCTATATATC-TGACCTTTTGCGGCGTTTGTTCC
* *
5915921 AAAAACGCCGCTATAGATATC-AACCTTTTGCAGCGTTTGTTCC
1 AAAAACGCCGCTAT--ATATCTGACCTTTTGCGGCGTTTGTTCC
5915964 AAAAACG
1 AAAAACG
5915971 TCGCAAAAGA
Statistics
Matches: 188, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
41 4 0.02
42 52 0.28
43 123 0.65
44 5 0.03
45 4 0.02
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (42 bp):
AAAAACGCCGCTATATATCTGACCTTTTGCGGCGTTTGTTCC
Found at i:5915820 original size:85 final size:85
Alignment explanation
Indices: 5915708--5915970 Score: 341
Period size: 85 Copynumber: 3.1 Consensus size: 85
5915698 GTTTGTATTA
** * *
5915708 AAAAACGCCGCTATATATCTGACCTTTTGCGGTATTTGTACCCAAAAACACCGCTA-A-ATATCT
1 AAAAACGCCGCTATATATCTGACCTTTTGCGGCGTTTGT-TCCAAAAACGCCGCTATAGATATC-
5915771 AACCTTTTGCGGCGTTTGTTCC
64 AACCTTTTGCGGCGTTTGTTCC
* * * * * * *
5915793 AAAAACCCCGCTAAATATCTAAACTTTTGCGGCGTTTATTCCAAAAATGCCGCTATAGATATCGA
1 AAAAACGCCGCTATATATCTGACCTTTTGCGGCGTTTGTTCCAAAAACGCCGCTATAGATATCAA
5915858 CCTTTTGCGGCGTTTGTTCC
66 CCTTTTGCGGCGTTTGTTCC
* * * *
5915878 ATAAACGCCGCTATAGATCTTGACCTTTTGCGACGTTTGTTCTAAAAACGCCGCTATAGATATCA
1 AAAAACGCCGCTATATATC-TGACCTTTTGCGGCGTTTGTTCCAAAAACGCCGCTATAGATATCA
*
5915943 ACCTTTTGCAGCGTTTGTTCC
65 ACCTTTTGCGGCGTTTGTTCC
5915964 AAAAACG
1 AAAAACG
5915971 TCGCAAAAGA
Statistics
Matches: 151, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
84 13 0.09
85 69 0.46
86 69 0.46
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (85 bp):
AAAAACGCCGCTATATATCTGACCTTTTGCGGCGTTTGTTCCAAAAACGCCGCTATAGATATCAA
CCTTTTGCGGCGTTTGTTCC
Found at i:5915931 original size:86 final size:85
Alignment explanation
Indices: 5915708--5916001 Score: 331
Period size: 86 Copynumber: 3.4 Consensus size: 85
5915698 GTTTGTATTA
* * ** * *
5915708 AAAAACGCCGCTATATATCTGACCTTTTGCGGTATTTGTACCCAAAAACACCGCTA-A-ATATCT
1 AAAAACGCCGCTAAAGATCTGACCTTTTGCGGCGTTTGT-TCCAAAAACGCCGCTATAGATATC-
5915771 AACCTTTTGCGGCGTTTGTTCC
64 AACCTTTTGCGGCGTTTGTTCC
* * * * * * *
5915793 AAAAACCCCGCTAAATATCTAAACTTTTGCGGCGTTTATTCCAAAAATGCCGCTATAGATATCGA
1 AAAAACGCCGCTAAAGATCTGACCTTTTGCGGCGTTTGTTCCAAAAACGCCGCTATAGATATCAA
5915858 CCTTTTGCGGCGTTTGTTCC
66 CCTTTTGCGGCGTTTGTTCC
* * * *
5915878 ATAAACGCCGCTATAGATCTTGACCTTTTGCGACGTTTGTTCTAAAAACGCCGCTATAGATATCA
1 AAAAACGCCGCTAAAGATC-TGACCTTTTGCGGCGTTTGTTCCAAAAACGCCGCTATAGATATCA
*
5915943 ACCTTTTGCAGCGTTTGTTCC
65 ACCTTTTGCGGCGTTTGTTCC
* * * * *
5915964 AAAAACGTCGCAAAAGATCTTGAACTATGGCGGCGTTT
1 AAAAACGCCGCTAAAGATC-TGACCTTTTGCGGCGTTT
5916002 TTGGTTCTCA
Statistics
Matches: 175, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
84 13 0.07
85 69 0.39
86 93 0.53
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (85 bp):
AAAAACGCCGCTAAAGATCTGACCTTTTGCGGCGTTTGTTCCAAAAACGCCGCTATAGATATCAA
CCTTTTGCGGCGTTTGTTCC
Found at i:5916000 original size:43 final size:43
Alignment explanation
Indices: 5915708--5916001 Score: 265
Period size: 43 Copynumber: 6.9 Consensus size: 43
5915698 GTTTGTATTA
* * ** *
5915708 AAAAACGCCGCTATATATC-TGACCTTTTGCGGTATTTGTACCC
1 AAAAACGCCGCTATAGATCTTGAACTTTTGCGGCGTTTGT-TCC
* * *
5915751 AAAAACACCGCTAAATATC-T-AACCTTTTGCGGCGTTTGTTCC
1 AAAAACGCCGCTATAGATCTTGAA-CTTTTGCGGCGTTTGTTCC
* * * * *
5915793 AAAAACCCCGCTAAATATC-TAAACTTTTGCGGCGTTTATTCC
1 AAAAACGCCGCTATAGATCTTGAACTTTTGCGGCGTTTGTTCC
* * * *
5915835 AAAAATGCCGCTATAGATATCGACCTTTTGCGGCGTTTGTTCC
1 AAAAACGCCGCTATAGATCTTGAACTTTTGCGGCGTTTGTTCC
* * * *
5915878 ATAAACGCCGCTATAGATCTTGACCTTTTGCGACGTTTGTTCT
1 AAAAACGCCGCTATAGATCTTGAACTTTTGCGGCGTTTGTTCC
* * *
5915921 AAAAACGCCGCTATAGAT-ATCAACCTTTTGCAGCGTTTGTTCC
1 AAAAACGCCGCTATAGATCTTGAA-CTTTTGCGGCGTTTGTTCC
* * * * *
5915964 AAAAACGTCGCAAAAGATCTTGAACTATGGCGGCGTTT
1 AAAAACGCCGCTATAGATCTTGAACTTTTGCGGCGTTT
5916002 TTGGTTCTCA
Statistics
Matches: 208, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
42 56 0.27
43 149 0.72
44 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
AAAAACGCCGCTATAGATCTTGAACTTTTGCGGCGTTTGTTCC
Found at i:5920365 original size:22 final size:22
Alignment explanation
Indices: 5920312--5920365 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
5920302 TTTAAATATT
*
5920312 TATTTTATATTTTTTTTATTAA
1 TATTTTATATTTTATTTATTAA
* *
5920334 TAATTTTAT-TTTCATTTGTTAA
1 T-ATTTTATATTTTATTTATTAA
5920356 T-TTTTATATT
1 TATTTTATATT
5920366 ATTAATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 6 0.22
21 2 0.07
22 12 0.44
23 7 0.26
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
TATTTTATATTTTATTTATTAA
Found at i:5927179 original size:13 final size:13
Alignment explanation
Indices: 5927163--5927192 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
5927153 TTATAACACA
*
5927163 CATTTATGACGCT
1 CATTTATGACGCG
5927176 CATTTATGACGCG
1 CATTTATGACGCG
5927189 CATT
1 CATT
5927193 GAGCGTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (13 bp):
CATTTATGACGCG
Found at i:5928701 original size:13 final size:13
Alignment explanation
Indices: 5928683--5928708 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5928673 TCAAAGATGG
5928683 GAGTTGAAAGGAA
1 GAGTTGAAAGGAA
5928696 GAGTTGAAAGGAA
1 GAGTTGAAAGGAA
5928709 ACATAGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.38, T:0.15
Consensus pattern (13 bp):
GAGTTGAAAGGAA
Found at i:5933472 original size:28 final size:28
Alignment explanation
Indices: 5933430--5933506 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
5933420 GAAGCCAACT
*
5933430 TGAAACACAATACCTCCCCAAATTAACC
1 TGAAACACATTACCTCCCCAAATTAACC
* *
5933458 TTAAACACATTACCTCCTCAAATTAACC
1 TGAAACACATTACCTCCCCAAATTAACC
* *
5933486 TGAAACACATTATCTTCCCAA
1 TGAAACACATTACCTCCCCAA
5933507 GTTAGCCTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.40, C:0.32, G:0.03, T:0.25
Consensus pattern (28 bp):
TGAAACACATTACCTCCCCAAATTAACC
Found at i:5934914 original size:60 final size:59
Alignment explanation
Indices: 5934821--5934981 Score: 187
Period size: 60 Copynumber: 2.7 Consensus size: 59
5934811 ATATGATATC
* * *
5934821 TTTAAAGAAACTAAGTTTGATTTTCAGACGTTTCTTGACATGGTATTTTCAAATGCATTT
1 TTTAAAGAAACTAAGTCTGATTTTCAGACGTTTCTTGACATGATATTTTCAAAAG-ATTT
* * * * *
5934881 TTTAAATAAGCTAAGTCTGATTTTCATATGTTTCTTGACATGATGTTTTCAAAAGATTTT
1 TTTAAAGAAACTAAGTCTGATTTTCAGACGTTTCTTGACATGATATTTTCAAAAGA-TTT
* * *
5934941 TTTAAAAAGAAACTAGGCCTGATTTTCAGAGGTTTCTTGAC
1 TTT--AAAGAAACTAAGTCTGATTTTCAGACGTTTCTTGAC
5934982 GATTAATCAA
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
59 1 0.01
60 53 0.63
62 30 0.36
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (59 bp):
TTTAAAGAAACTAAGTCTGATTTTCAGACGTTTCTTGACATGATATTTTCAAAAGATTT
Found at i:5935322 original size:41 final size:42
Alignment explanation
Indices: 5935221--5935332 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 42
5935211 TCTTACTTAG
* * * *
5935221 TAAGTCCCTCGGGCCAT-TAGTAAGTATTTCGAGCATGATGCT
1 TAAGTCCTTCGGGCCATCTA-TAAGCATTTCGAGCAAGATGCA
* * * *
5935263 TAAATCCTTCGTGTCATCTATAAGCCTTTCGAGCAAGATG-A
1 TAAGTCCTTCGGGCCATCTATAAGCATTTCGAGCAAGATGCA
5935304 TAAGTCCTTCGGGCCATCTATAAGGCATT
1 TAAGTCCTTCGGGCCATCTATAA-GCATT
5935333 CAGGCAAGAT
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
41 20 0.36
42 34 0.61
43 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (42 bp):
TAAGTCCTTCGGGCCATCTATAAGCATTTCGAGCAAGATGCA
Found at i:5935496 original size:241 final size:240
Alignment explanation
Indices: 5935139--5935714 Score: 775
Period size: 241 Copynumber: 2.4 Consensus size: 240
5935129 TTTCCAAAGT
* **
5935139 TTTCCAAAGTTTCTCATTTAAATC-TTTCTTG-AAATTTGATTTTTTT--AAAGTAAGAAAACAA
1 TTTCCAAAGCTTCTCATTTAAATCTTTTC-TGAAAATTT-ATTTTTTTGAAAAGTAAGAAAATGA
* * * * ** * * *
5935200 TTTCCAAAGTTTCTTACTTAGTAAGTCCCTCGGGCCATTAGTAAGTATTTCGAGCATGATGCTTA
64 TTTCCAAAGTTTCTTACTTAGTAAGTCCTTTGGCCCATCAACAAATATATCGAGCATGATGCCTA
* * *
5935265 AATCCTTCGTGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCAT-CTATAAGG
129 AATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCATAC-ATAAGA
* * *
5935329 CATTCAGGCAAGATATTTTCACATAATTTTCGAAAAATGAGAAAGTGA
193 CATCCAGGCAAGATATTTTCACATAATTTTCGAAAAATGAAAAAGCGA
**
5935377 TTTCTGAAGCTTCTCATTTAAATCTTTTCTGAAAATTTATTTTTTTTGAAAAGTAAGAAAATGAT
1 TTTCCAAAGCTTCTCATTTAAATCTTTTCTGAAAATTTA-TTTTTTTGAAAAGTAAGAAAATGAT
*
5935442 TTCCAAAGTTTCTTACTTAGTAAGTCCTTTGGCCCATCAACAAATCTATCGAGCATGATGCCTAA
65 TTCCAAAGTTTCTTACTTAGTAAGTCCTTTGGCCCATCAACAAATATATCGAGCATGATGCCTAA
* *
5935507 ATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCTTTCGAGCCATACATAAGACC
130 ATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCATACATAAGACA
* * * * *
5935572 TCCGGGCATGATGTTTTCACATGATTTTTGAAAAATGAAAAAGCGA
195 TCCAGGCAAGATATTTTCACATAATTTTCGAAAAATGAAAAAGCGA
* *
5935618 TTTCCAAAGCTTCTCATTTAAATCTTTTCTGAAAATTGATTTTTTTGAAAAGTAAAAAAAATGAT
1 TTTCCAAAGCTTCTCATTTAAATCTTTTCTGAAAATTTATTTTTTTGAAAAGT-AAGAAAATGAT
* * *
5935683 TTCCTATGTTTCTTACTTAGTAAGTCATTTGG
65 TTCCAAAGTTTCTTACTTAGTAAGTCCTTTGG
5935715 GCCTCGTAAC
Statistics
Matches: 296, Mismatches: 35, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
238 24 0.08
239 17 0.06
240 14 0.05
241 240 0.81
242 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (240 bp):
TTTCCAAAGCTTCTCATTTAAATCTTTTCTGAAAATTTATTTTTTTGAAAAGTAAGAAAATGATT
TCCAAAGTTTCTTACTTAGTAAGTCCTTTGGCCCATCAACAAATATATCGAGCATGATGCCTAAA
TCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCATACATAAGACAT
CCAGGCAAGATATTTTCACATAATTTTCGAAAAATGAAAAAGCGA
Found at i:5937607 original size:336 final size:336
Alignment explanation
Indices: 5936994--5937644 Score: 1266
Period size: 336 Copynumber: 1.9 Consensus size: 336
5936984 TTCAACAAAG
5936994 AATTAGTTCATATTTTTCATCATTTAAAGAAATGGATCTCAGGAAAACTGAGGACCATCGGGTCA
1 AATTAGTTCATATTTTTCATCATTTAAAGAAATGGATCTCAGGAAAACTGAGGACCATCGGGTCA
*
5937059 TTACCTTCGGGTATTTTAATACAAATCACTGACATATGATTATCTTTCGCAGGTTTAAAACTTTT
66 TTACCTTCGGATATTTTAATACAAATCACTGACATATGATTATCTTTCGCAGGTTTAAAACTTTT
5937124 CAAAGAGATGATAAGCTAATCAAAATTTCAATGGAAGGGTTGATAATAAGAAGAACTCATCCCAT
131 CAAAGAGATGATAAGCTAATCAAAATTTCAATGGAAGGGTTGATAATAAGAAGAACTCATCCCAT
5937189 GAGGGAGAAGAAGTTCATAATGAAAAGAACTTGTTCAACCTCTGTTTGATTCCATCACATAAAGA
196 GAGGGAGAAGAAGTTCATAATGAAAAGAACTTGTTCAACCTCTGTTTGATTCCATCACATAAAGA
5937254 GGTGGATCAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGATGACCATATTTTT
261 GGTGGATCAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGATGACCATATTTTT
5937319 CATATTTAAAA
326 CATATTTAAAA
*
5937330 AATTAGTTCATATTTTTCATCATTTAAAGAAATGGATCTCAGGAAAACTGAGGACTATCGGGTCA
1 AATTAGTTCATATTTTTCATCATTTAAAGAAATGGATCTCAGGAAAACTGAGGACCATCGGGTCA
5937395 TTACCTTCGGATATTTTAATACAAATCACTGACATATGATTATCTTTCGCAGGTTTAAAACTTTT
66 TTACCTTCGGATATTTTAATACAAATCACTGACATATGATTATCTTTCGCAGGTTTAAAACTTTT
5937460 CAAAGAGATGATAAGCTAATCAAAATTTCAATGGAAGGGTTGATAATAAGAAGAACTCATCCCAT
131 CAAAGAGATGATAAGCTAATCAAAATTTCAATGGAAGGGTTGATAATAAGAAGAACTCATCCCAT
*
5937525 GAGGGAGAAGAAGTTCATAATGAAAAGAACTTGTTCAACCTCTGTTTGATTCCATCACATAAGGA
196 GAGGGAGAAGAAGTTCATAATGAAAAGAACTTGTTCAACCTCTGTTTGATTCCATCACATAAAGA
*
5937590 GGTGGATCAACATTTCCAATGGGAGAGTTCATAATTAGAAGAACTCGTCTGATGA
261 GGTGGATCAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGATGA
5937645 GGGAGAATAA
Statistics
Matches: 311, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
336 311 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (336 bp):
AATTAGTTCATATTTTTCATCATTTAAAGAAATGGATCTCAGGAAAACTGAGGACCATCGGGTCA
TTACCTTCGGATATTTTAATACAAATCACTGACATATGATTATCTTTCGCAGGTTTAAAACTTTT
CAAAGAGATGATAAGCTAATCAAAATTTCAATGGAAGGGTTGATAATAAGAAGAACTCATCCCAT
GAGGGAGAAGAAGTTCATAATGAAAAGAACTTGTTCAACCTCTGTTTGATTCCATCACATAAAGA
GGTGGATCAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGATGACCATATTTTT
CATATTTAAAA
Found at i:5937659 original size:39 final size:39
Alignment explanation
Indices: 5937615--5937751 Score: 204
Period size: 39 Copynumber: 3.5 Consensus size: 39
5937605 CCAATGGGAG
* *
5937615 AGTTCATAATTAGAAGAACTCGTCTGATGAGGGAGAATA
1 AGTTCATAATGAGAAGAACTCGTCTGATGAGGGAGAAAA
5937654 AGTTCATAATGAGAAGAACTCGT-TCGATGAGGGAGAAAA
1 AGTTCATAATGAGAAGAACTCGTCT-GATGAGGGAGAAAA
* * * *
5937693 AATTCATAATGAGAAGAACTAGTCCGATGAGGGAGAAGA
1 AGTTCATAATGAGAAGAACTCGTCTGATGAGGGAGAAAA
5937732 AGTTCATAATGAGAAGAACT
1 AGTTCATAATGAGAAGAACT
5937752 TGTTCAACCT
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 88 0.99
ACGTcount: A:0.42, C:0.10, G:0.26, T:0.22
Consensus pattern (39 bp):
AGTTCATAATGAGAAGAACTCGTCTGATGAGGGAGAAAA
Found at i:5937678 original size:20 final size:20
Alignment explanation
Indices: 5937616--5937678 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
5937606 CAATGGGAGA
*
5937616 GTTCATAATTAGAAGAACTC
1 GTTCATAATGAGAAGAACTC
* * *
5937636 G-TC-TGATGAGGGAGAA-TAA
1 GTTCATAATGA-GAAGAACT-C
5937655 GTTCATAATGAGAAGAACTC
1 GTTCATAATGAGAAGAACTC
5937675 GTTC
1 GTTC
5937679 GATGAGGGAG
Statistics
Matches: 31, Mismatches: 7, Indels: 10
0.65 0.15 0.21
Matches are distributed among these distances:
18 5 0.16
19 8 0.26
20 12 0.39
21 6 0.19
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.27
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTC
Found at i:5937756 original size:20 final size:19
Alignment explanation
Indices: 5937655--5937757 Score: 52
Period size: 17 Copynumber: 5.3 Consensus size: 19
5937645 GGGAGAATAA
5937655 GTTCATAATGAGAAGAACT
1 GTTCATAATGAGAAGAACT
** *
5937674 CGTTCGATGAGGGAGAA-AA-A
1 -GTTC-AT-AATGAGAAGAACT
*
5937694 ATTCATAATGAGAAGAACT
1 GTTCATAATGAGAAGAACT
* **
5937713 AGTCCGATGAGGGAGAAGAA--
1 -GTTC-AT-AATGAGAAGAACT
5937733 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAAC-T
5937753 GTTCA
1 GTTCA
5937758 ACCTTAGCTC
Statistics
Matches: 59, Mismatches: 14, Indels: 20
0.63 0.15 0.22
Matches are distributed among these distances:
17 15 0.25
18 6 0.10
19 6 0.10
20 11 0.19
21 6 0.10
22 15 0.25
ACGTcount: A:0.41, C:0.11, G:0.26, T:0.22
Consensus pattern (19 bp):
GTTCATAATGAGAAGAACT
Found at i:5937943 original size:204 final size:202
Alignment explanation
Indices: 5937695--5938252 Score: 722
Period size: 204 Copynumber: 2.7 Consensus size: 202
5937685 GGAGAAAAAA
* *
5937695 TTCATAATGAGAAGAACT-AGTCCGATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
1 TTCATAATGAGAAGAACTCA-TCCGATGAGGGAGAAAAAGTTCATAATGAGAAAAACTTGTTCAA
* * *
5937759 CCTTAGCTCAACTCCATCACATAAGGAGTTGGAATGACACCAATACTTGGCTCATCCATCGCATA
65 CCTTAGCTCGATTCCATCACATAAGGAGTTGGAA-AACACCAA-ACTTGGCTCATCCATCGCATA
* * * * *
5937824 TGGAGTTGGATCAACATTATCACTTTGTTCAACATCATTATAGAAGGAGGTGGATTAACATTTCT
128 TGGAGTTGGATCAACATCATCACTTTGTTCAACATCATCATAGAAGGAGGTGGATCAACATTCCC
5937889 AATGAGAGAG
193 AATGAGAGAG
* * * *
5937899 TTCATAATGAGAATAACTCATCCAATGAGGGAGAATAAGTTCATAATGAGAAAAACTTGTTCAAT
1 TTCATAATGAGAAGAACTCATCCGATGAGGGAGAAAAAGTTCATAATGAGAAAAACTTGTTCAAC
* * * **
5937964 CTTAGCTTGATTCCATCATATAAGGAATTGGAACAGTACCAACACTTGGCTCATCCATCGCATAT
66 CTTAGCTCGATTCCATCACATAAGGAGTTGGAA-AACACCAA-ACTTGGCTCATCCATCGCATAT
* * **
5938029 GAAGTTGGATCAACATCATCACTTTGTTCGATTTCATCATAGAAGGAGGTGGATCAACATTCCCA
129 GGAGTTGGATCAACATCATCACTTTGTTCAACATCATCATAGAAGGAGGTGGATCAACATTCCCA
*
5938094 ATGGGAGAG
194 ATGAGAGAG
* * * *
5938103 TTCATAATGAGAAGAACTCATGCGATAAAGGAGAAAAAGTTCATAATGAGAATAACTTGTTCAAC
1 TTCATAATGAGAAGAACTCATCCGATGAGGGAGAAAAAGTTCATAATGAGAAAAACTTGTTCAAC
* * * * * *
5938168 CTTAGCTCGTTTCCATCACATAAGGAGTTGGAACAACACCGACCTTGGATCATCCATTGCATAAG
66 CTTAGCTCGATTCCATCACATAAGGAGTTGGAA-AACACCAAACTTGGCTCATCCATCGCATATG
* **
5938233 GAATTGGATCAGTATCATCA
130 GAGTTGGATCAACATCATCA
5938253 TTTTTCTCGT
Statistics
Matches: 305, Mismatches: 48, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
203 35 0.11
204 269 0.88
205 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (202 bp):
TTCATAATGAGAAGAACTCATCCGATGAGGGAGAAAAAGTTCATAATGAGAAAAACTTGTTCAAC
CTTAGCTCGATTCCATCACATAAGGAGTTGGAAAACACCAAACTTGGCTCATCCATCGCATATGG
AGTTGGATCAACATCATCACTTTGTTCAACATCATCATAGAAGGAGGTGGATCAACATTCCCAAT
GAGAGAG
Found at i:5938275 original size:42 final size:42
Alignment explanation
Indices: 5938220--5938333 Score: 165
Period size: 42 Copynumber: 2.7 Consensus size: 42
5938210 CCTTGGATCA
* * **
5938220 TCCATTGCATAAGGAATTGGATCAGTATCATCATTTTTCTCG
1 TCCATCGCATAAGGAATTGGATCAGCATCATCATTTCGCTCG
* *
5938262 TCCATCGCATAAGGAGTTGGATCAGCATCATTATTTCGCTCG
1 TCCATCGCATAAGGAATTGGATCAGCATCATCATTTCGCTCG
*
5938304 TCCATCACATAAGGAATTGGATCAGCATCA
1 TCCATCGCATAAGGAATTGGATCAGCATCA
5938334 ACTTGGGTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (42 bp):
TCCATCGCATAAGGAATTGGATCAGCATCATCATTTCGCTCG
Found at i:5953056 original size:112 final size:112
Alignment explanation
Indices: 5952722--5953131 Score: 493
Period size: 112 Copynumber: 3.7 Consensus size: 112
5952712 ATTGAATAAA
* * * ** *
5952722 TTCTTC-TCTTTCTTCAGATGAGTTCTTCTCATT-TGAACTTTATGCTGGGGATGATGATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCT-CTGGAAAAGATGATCCATC
5952785 AAATGATGAATTCAAGCAAAAGATTGAACAAGTTCTTCTCATTATGAC
65 AAATGATGAATTCAAGCAAAAGATTGAACAAGTTCTTCTCATTATGAC
* * * *
5952833 TTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC-CTGGCAATGTTGATCC
1 TTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAAC-CTTCTCTGGAAAAGATGATCC
5952897 -TCAAATGATGAATTCAAGCAAAAGATTGAACAAGTTCTTCTCATTATGAAC
62 ATCAAATGATGAATTCAAGCAAAAGATTGAACAAGTTCTTCTCATTATG-AC
*
5952948 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT-AACCTTCTCTGGAAAAGATAATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATGATCCATCA
* * *
5953012 ATTTGATGAATTC-AG-AAAAAAGTTGAACAAATTCTTCTCATTATGAC
66 A-ATGATGAATTCAAGCAAAAGA-TTGAACAAGTTCTTCTCATTATGAC
* *
5953059 CT-TTCTTCCTTCTTC--A-GAGTTCTTCTCATTATGAACC-TCTCTTGGAAAAGCTGATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC-TGGAAAAGATGATCCATC
*
5953119 AAGTGATAGAATT
65 AAATGAT-GAATT
5953132 AGGCAGAAGG
Statistics
Matches: 266, Mismatches: 19, Indels: 31
0.84 0.06 0.10
Matches are distributed among these distances:
107 24 0.09
108 28 0.11
110 16 0.06
111 29 0.11
112 56 0.21
113 10 0.04
114 48 0.18
115 49 0.18
116 5 0.02
117 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (112 bp):
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATGATCCATCA
AATGATGAATTCAAGCAAAAGATTGAACAAGTTCTTCTCATTATGAC
Found at i:5953177 original size:125 final size:129
Alignment explanation
Indices: 5953033--5953272 Score: 409
Period size: 130 Copynumber: 1.9 Consensus size: 129
5953023 TCAGAAAAAA
5953033 GTTGAACAAATTCTTCTCATTATG-ACCT-TTCTTCCTTCTTC-A-GAGTTCTTCTCATTATGAA
1 GTTGAACAAATTCTTCTCATTATGAACCTCTTCTTCCTTCTTCAACGAGTTCTTCTCATTATGAA
5953094 CC-TCTCTTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGCAGAAGGTGAATTTAGGTAACAG
66 CCTTCTC-TGGAAAAGCTGATCCATCAAGTGATAGAATTAGGCAGAAGGTGAATTTAGGTAACAG
**
5953158 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGACGAGTTCTTCTCATTATGA
1 GTTGAACAAATTCTTCTCATTATGAACCTCTTCTTCCTTCTTCA-ACGAGTTCTTCTCATTATGA
5953223 ACCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGCAGAAGGT
65 ACCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGCAGAAGGT
5953273 TGAACAAATT
Statistics
Matches: 107, Mismatches: 2, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
125 24 0.22
126 2 0.02
127 13 0.12
129 1 0.01
130 63 0.59
131 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (129 bp):
GTTGAACAAATTCTTCTCATTATGAACCTCTTCTTCCTTCTTCAACGAGTTCTTCTCATTATGAA
CCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGCAGAAGGTGAATTTAGGTAACAG
Found at i:5954138 original size:83 final size:83
Alignment explanation
Indices: 5954002--5954632 Score: 953
Period size: 83 Copynumber: 7.7 Consensus size: 83
5953992 TAGTTCTTAC
*
5954002 ACCAGATCAGATAACTC-AAGAACACTTCC--AAGATGCTATTAGCAAATTCATCTTCCAAATTC
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCCAAATTC
5954064 AATGATTGGTTCTGCCAA
66 AATGATTGGTTCTGCCAA
* *
5954082 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCATCTTCCCAATTC
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCCAAATTC
*
5954147 AATGATTGGTTCTGCTAA
66 AATGATTGGTTCTGCCAA
* * *
5954165 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCTAAATTC
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCCAAATTC
5954230 AATGATTGG-TCTGTCC-A
66 AATGATTGGTTCTG-CCAA
* *
5954247 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCA--TTCCCAATTC
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCCAAATTC
*
5954310 AATGATTGGTTCTGCTAA
66 AATGATTGGTTCTGCCAA
* * *
5954328 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCTAAATTC
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCCAAATTC
5954393 AATGATTGGTTCTGTCC-A
66 AATGATTGGTTCTG-CCAA
* *
5954411 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCCCAATTC
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCCAAATTC
* *
5954476 AATGATTGGTTCTTCTAA
66 AATGATTGGTTCTGCCAA
* *
5954494 ACCAGGTCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCTAAATT
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCAAATTCATCTTCCAAATT
*
5954558 CAATAATT-GTTCTGTCC-A
65 CAATGATTGGTTCTG-CCAA
5954576 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTT
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCAAATTCATCTT
5954633 TCAGTTAATG
Statistics
Matches: 502, Mismatches: 37, Indels: 22
0.89 0.07 0.04
Matches are distributed among these distances:
80 35 0.07
81 67 0.13
82 118 0.24
83 279 0.56
84 3 0.01
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (83 bp):
ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTCCAAATTC
AATGATTGGTTCTGCCAA
Found at i:5954465 original size:246 final size:248
Alignment explanation
Indices: 5954002--5954632 Score: 949
Period size: 246 Copynumber: 2.6 Consensus size: 248
5953992 TAGTTCTTAC
*
5954002 ACCAGATCAGATAACTC-AAGAACACTTCC--AAGATGCTATTAGCAAATTCATCTTCCAAATTC
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCA-CTTCCAAATTC
* *
5954064 AATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCA
65 AATGATTGGTTCTGCTAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCA
* *
5954129 TATTCATCTTCCCAATTCAATGATTGGTTCTGCTAAACCAGATCAGATAACTCAAAGAACACTTC
130 AATTCATCTTCCAAATTCAATGATTGGTTCTGCTAAACCAGATCAGATAACTCAAAGAACACTTC
* * *
5954194 CAGAAGATGCTATTAACAAATTCATCTTCTAAATTCAATGATTGG-TCTGTC-CA
195 CAGAAGATGCTATGAACAAATTCATCTTCCAAATTCAATGATTGGTTCT-TCTAA
* *
5954247 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCATATTCA-TTCCCAATTCA
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCACTTCCAAATTCA
*
5954311 ATGATTGGTTCTGCTAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAA
66 ATGATTGGTTCTGCTAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCAA
* *
5954376 ATTCATCTTCTAAATTCAATGATTGGTTCTG-TCCAACCAGATCAGATAACTCAAAGAACACTTC
131 ATTCATCTTCCAAATTCAATGATTGGTTCTGCT-AAACCAGATCAGATAACTCAAAGAACACTTC
* * *
5954440 CAGAAGATGCTATGAGCACATTCATCTTCCCAATTCAATGATTGGTTCTTCTAA
195 CAGAAGATGCTATGAACAAATTCATCTTCCAAATTCAATGATTGGTTCTTCTAA
* *
5954494 ACCAGGTCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCTAAATT
1 ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCAAATTCA-CTTCCAAATT
* * *
5954558 CAATAATT-GTTCTG-TCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGG
64 CAATGATTGGTTCTGCT-AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAG
5954621 CAAATTCATCTT
128 CAAATTCATCTT
5954633 TCAGTTAATG
Statistics
Matches: 352, Mismatches: 24, Indels: 17
0.90 0.06 0.04
Matches are distributed among these distances:
245 18 0.05
246 184 0.52
247 53 0.15
248 83 0.24
249 14 0.04
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (248 bp):
ACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCACTTCCAAATTCA
ATGATTGGTTCTGCTAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCAA
ATTCATCTTCCAAATTCAATGATTGGTTCTGCTAAACCAGATCAGATAACTCAAAGAACACTTCC
AGAAGATGCTATGAACAAATTCATCTTCCAAATTCAATGATTGGTTCTTCTAA
Found at i:5955783 original size:9 final size:8
Alignment explanation
Indices: 5955765--5955825 Score: 81
Period size: 8 Copynumber: 7.6 Consensus size: 8
5955755 CTTGACCCCC
5955765 TTTTTC-T
1 TTTTTCTT
*
5955772 TTTTTCCT
1 TTTTTCTT
5955780 TTTTTCTT
1 TTTTTCTT
5955788 TTTTT-TT
1 TTTTTCTT
5955795 TTTTTCTT
1 TTTTTCTT
5955803 TTTCTTCTT
1 TTT-TTCTT
5955812 TTTTTCTCT
1 TTTTTCT-T
5955821 TTTTT
1 TTTTT
5955826 TTCTTCAAGC
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
7 13 0.27
8 22 0.45
9 14 0.29
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:5955785 original size:15 final size:15
Alignment explanation
Indices: 5955765--5955825 Score: 77
Period size: 15 Copynumber: 3.9 Consensus size: 15
5955755 CTTGACCCCC
*
5955765 TTTTTCTTTTTTCCT
1 TTTTTCTTTTTTTCT
*
5955780 TTTTTCTTTTTTTTT
1 TTTTTCTTTTTTTCT
5955795 TTTTTCTTTTTCTTCTT
1 TTTTTCTTTTT-TTC-T
5955812 TTTTTCTCTTTTTT
1 TTTTTCT-TTTTTT
5955826 TTCTTCAAGC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
15 24 0.60
16 2 0.05
17 10 0.25
18 4 0.10
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTCTTTTTTTCT
Found at i:5955790 original size:21 final size:21
Alignment explanation
Indices: 5955764--5955825 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 21
5955754 CCTTGACCCC
5955764 CTTTTTCTTTTTTCCTTTTTT
1 CTTTTTCTTTTTTCCTTTTTT
5955785 CTTTTT-TTTTTT--TTTCTTT
1 CTTTTTCTTTTTTCCTTT-TTT
*
5955804 -TTCTTCTTTTTTTCTCTTTTTT
1 CTTTTTC-TTTTTTC-CTTTTTT
5955826 TTCTTCAAGC
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
18 7 0.21
19 3 0.09
20 12 0.35
21 6 0.18
22 3 0.09
23 3 0.09
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (21 bp):
CTTTTTCTTTTTTCCTTTTTT
Found at i:5955795 original size:11 final size:11
Alignment explanation
Indices: 5955779--5955830 Score: 70
Period size: 11 Copynumber: 4.8 Consensus size: 11
5955769 TCTTTTTTCC
5955779 TTTTTTCTTTT
1 TTTTTTCTTTT
5955790 TTTTTT-TTTT
1 TTTTTTCTTTT
* *
5955800 CTTTTTCTTCT
1 TTTTTTCTTTT
*
5955811 TTTTTTCTCTT
1 TTTTTTCTTTT
5955822 TTTTTTCTT
1 TTTTTTCTT
5955831 CAAGCATAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 9 0.26
11 25 0.74
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:5966573 original size:20 final size:21
Alignment explanation
Indices: 5966540--5966580 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
5966530 TATTATATAT
5966540 ATATTTATGAATAT-ATAAAA
1 ATATTTATGAATATAATAAAA
**
5966560 ATATTTATTCATATAATAAAA
1 ATATTTATGAATATAATAAAA
5966581 TAAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
ATATTTATGAATATAATAAAA
Found at i:5968012 original size:14 final size:15
Alignment explanation
Indices: 5967993--5968026 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
5967983 GTCTGTAATT
5967993 ATTTATTT-ATATAG
1 ATTTATTTAATATAG
*
5968007 ATTTATTTAATATAT
1 ATTTATTTAATATAG
5968022 ATTTA
1 ATTTA
5968027 ATAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
ATTTATTTAATATAG
Found at i:5968033 original size:3 final size:3
Alignment explanation
Indices: 5968025--5968053 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
5968015 AATATATATT
5968025 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
5968054 TGGGTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:5969438 original size:29 final size:29
Alignment explanation
Indices: 5969406--5969488 Score: 123
Period size: 29 Copynumber: 2.9 Consensus size: 29
5969396 TATTTTAAGG
* *
5969406 TAACTACCAACTTTTATTTTATTGTATAT
1 TAACTACTAACTTTTATTTTATTGCATAT
*
5969435 TAACTAGTAACTTTTATTTTATTGCATAT
1 TAACTACTAACTTTTATTTTATTGCATAT
*
5969464 TAACCACTAA-TTTTATTTTATTGCA
1 TAACTACTAACTTTTATTTTATTGCA
5969489 CTTTAACCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 15 0.31
29 34 0.69
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (29 bp):
TAACTACTAACTTTTATTTTATTGCATAT
Found at i:5969486 original size:28 final size:29
Alignment explanation
Indices: 5969414--5969497 Score: 118
Period size: 29 Copynumber: 2.9 Consensus size: 29
5969404 GGTAACTACC
* * *
5969414 AACTTTTATTTTATTGTATATTAACTAGT
1 AACTTTTATTTTATTGCATATTAACCACT
5969443 AACTTTTATTTTATTGCATATTAACCACT
1 AACTTTTATTTTATTGCATATTAACCACT
5969472 AA-TTTTATTTTATTGCACT-TTAACCA
1 AACTTTTATTTTATTGCA-TATTAACCA
5969498 AATTATTTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
28 22 0.43
29 29 0.57
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (29 bp):
AACTTTTATTTTATTGCATATTAACCACT
Found at i:5970921 original size:18 final size:19
Alignment explanation
Indices: 5970882--5970921 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
5970872 TGGTAAACTC
*
5970882 AAACCAATTTTTGTCTTAA
1 AAACAAATTTTTGTCTTAA
5970901 AAACAAATTTTT-TCCTTAA
1 AAACAAATTTTTGT-CTTAA
5970920 AA
1 AA
5970922 TAGTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (19 bp):
AAACAAATTTTTGTCTTAA
Found at i:5974061 original size:16 final size:15
Alignment explanation
Indices: 5973997--5974076 Score: 65
Period size: 15 Copynumber: 5.2 Consensus size: 15
5973987 AAACAAAGAG
5973997 AAAAAGCAAA-AAAGGA
1 AAAAAGCAAAGAAA--A
*
5974013 AAAAATGTAAAGAAAA
1 AAAAA-GCAAAGAAAA
* * *
5974029 AAGAGGCAAAGAGAA
1 AAAAAGCAAAGAAAA
*
5974044 AAAAAGCAAAGCAAA
1 AAAAAGCAAAGAAAA
5974059 AAAAA-CAAAGAAAGA
1 AAAAAGCAAAGAAA-A
5974074 AAA
1 AAA
5974077 GAAGACAAGA
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
14 7 0.14
15 28 0.55
16 9 0.18
17 4 0.08
18 3 0.06
ACGTcount: A:0.74, C:0.06, G:0.17, T:0.03
Consensus pattern (15 bp):
AAAAAGCAAAGAAAA
Found at i:5974076 original size:13 final size:13
Alignment explanation
Indices: 5974011--5974077 Score: 53
Period size: 14 Copynumber: 4.7 Consensus size: 13
5974001 AGCAAAAAAG
* *
5974011 GAAAAAATGTAAA
1 GAAAAAAAGCAAA
5974024 GAAAAAAGAGGCAAAGA
1 GAAAAAA-A-GC-AA-A
5974041 GAAAAAAAGCAAA
1 GAAAAAAAGCAAA
*
5974054 GCAAAAAAAACAAA
1 G-AAAAAAAGCAAA
5974068 GAAAGAAAAG
1 GAAA-AAAAG
5974078 AAGACAAGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 12 0.27
14 18 0.41
15 3 0.07
16 3 0.07
17 8 0.18
ACGTcount: A:0.72, C:0.06, G:0.19, T:0.03
Consensus pattern (13 bp):
GAAAAAAAGCAAA
Found at i:5974291 original size:120 final size:120
Alignment explanation
Indices: 5974078--5974323 Score: 492
Period size: 120 Copynumber: 2.0 Consensus size: 120
5974068 GAAAGAAAAG
5974078 AAGACAAGAAGCACATGCAAAGAGTCCATCGAGTCAAATGACGCTTCGAGCATCAAACCATAAGA
1 AAGACAAGAAGCACATGCAAAGAGTCCATCGAGTCAAATGACGCTTCGAGCATCAAACCATAAGA
5974143 TTGATCAAATACAACCGGTTTAAAGATCCAGAATTAATTCACCAGAAGATCATAA
66 TTGATCAAATACAACCGGTTTAAAGATCCAGAATTAATTCACCAGAAGATCATAA
5974198 AAGACAAGAAGCACATGCAAAGAGTCCATCGAGTCAAATGACGCTTCGAGCATCAAACCATAAGA
1 AAGACAAGAAGCACATGCAAAGAGTCCATCGAGTCAAATGACGCTTCGAGCATCAAACCATAAGA
5974263 TTGATCAAATACAACCGGTTTAAAGATCCAGAATTAATTCACCAGAAGATCATAA
66 TTGATCAAATACAACCGGTTTAAAGATCCAGAATTAATTCACCAGAAGATCATAA
5974318 AAGACA
1 AAGACA
5974324 TACGACCATA
Statistics
Matches: 126, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 126 1.00
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.19
Consensus pattern (120 bp):
AAGACAAGAAGCACATGCAAAGAGTCCATCGAGTCAAATGACGCTTCGAGCATCAAACCATAAGA
TTGATCAAATACAACCGGTTTAAAGATCCAGAATTAATTCACCAGAAGATCATAA
Found at i:5978452 original size:12 final size:12
Alignment explanation
Indices: 5978435--5978463 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
5978425 TTGTTGTGCT
5978435 TGCTCCTCGGGC
1 TGCTCCTCGGGC
5978447 TGCTCCTCGGGC
1 TGCTCCTCGGGC
5978459 TGCTC
1 TGCTC
5978464 AGGTTCATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.41, G:0.31, T:0.28
Consensus pattern (12 bp):
TGCTCCTCGGGC
Found at i:5980134 original size:23 final size:21
Alignment explanation
Indices: 5980076--5980155 Score: 65
Period size: 21 Copynumber: 3.8 Consensus size: 21
5980066 TAACCCCAGG
* ***
5980076 GGGGGTATCGATTCCCCTGTG
1 GGGGGAATCGATTCCCCTCAA
5980097 GGGGGAATC-AGTTCCCCTTCAAA
1 GGGGGAATCGA-TTCCCC-TC-AA
*
5980120 GGGGGAATCGATT-CCCTCAT
1 GGGGGAATCGATTCCCCTCAA
*
5980140 GGGGGTATCGATTCCC
1 GGGGGAATCGATTCCC
5980156 TCTGCACCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 14 0.29
21 18 0.38
22 4 0.08
23 11 0.23
24 1 0.02
ACGTcount: A:0.17, C:0.25, G:0.33, T:0.25
Consensus pattern (21 bp):
GGGGGAATCGATTCCCCTCAA
Found at i:5980149 original size:20 final size:20
Alignment explanation
Indices: 5980120--5980157 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
5980110 CCCCTTCAAA
5980120 GGGGGAATCGATTCCCTCAT
1 GGGGGAATCGATTCCCTCAT
*
5980140 GGGGGTATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
5980158 TGCACCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.26, G:0.32, T:0.26
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAT
Found at i:5984002 original size:22 final size:21
Alignment explanation
Indices: 5983960--5983999 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
5983950 GAGTTTATTT
*
5983960 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
5983981 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
5984000 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:5986451 original size:37 final size:37
Alignment explanation
Indices: 5986407--5986554 Score: 149
Period size: 37 Copynumber: 4.0 Consensus size: 37
5986397 TATTTCTCTC
* *
5986407 AAAACAAAGTTTCGTCTCGCTAGAGACAGTTTTTCTT-
1 AAAACAAA-TTTCGTCTCACTTGAGACAGTTTTTCTTA
* * **
5986444 GAAACAAAATT-GATCTCACTTGAGATTG-TTTTCTTA
1 AAAACAAATTTCG-TCTCACTTGAGACAGTTTTTCTTA
* *
5986480 AAAACAAATTTTGTCTCGCTTGAGACAGTTTTTCTTA
1 AAAACAAATTTCGTCTCACTTGAGACAGTTTTTCTTA
* * * *
5986517 TAAACAAATTTCTTCTCACTTGAGACAGTATTCCTTA
1 AAAACAAATTTCGTCTCACTTGAGACAGTTTTTCTTA
5986554 A
1 A
5986555 GACATGAACA
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
35 8 0.09
36 34 0.38
37 47 0.53
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (37 bp):
AAAACAAATTTCGTCTCACTTGAGACAGTTTTTCTTA
Found at i:5986485 original size:73 final size:73
Alignment explanation
Indices: 5986390--5986541 Score: 200
Period size: 73 Copynumber: 2.1 Consensus size: 73
5986380 TCTGTCGCAT
*
5986390 TTGAGATTATTTCTCTCAAAACAAAGTTTCGTCTCGCTAGAGACAGTTTTTCTT-GAAACAAAAT
1 TTGAGATTATTTCTCTAAAAACAAA-TTTCGTCTCGCTAGAGACAGTTTTTCTTAGAAACAAAAT
*
5986454 TGATCTCAC
65 TCATCTCAC
* * * * *
5986463 TTGAGATTGTTT-TCTTAAAAACAAATTTTGTCTCGCTTGAGACAGTTTTTCTTATAAACAAATT
1 TTGAGATTATTTCTC-TAAAAACAAATTTCGTCTCGCTAGAGACAGTTTTTCTTAGAAACAAAAT
*
5986527 TCTTCTCAC
65 TCATCTCAC
5986536 TTGAGA
1 TTGAGA
5986542 CAGTATTCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
72 28 0.41
73 41 0.59
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (73 bp):
TTGAGATTATTTCTCTAAAAACAAATTTCGTCTCGCTAGAGACAGTTTTTCTTAGAAACAAAATT
CATCTCAC
Found at i:5986705 original size:99 final size:97
Alignment explanation
Indices: 5986602--5986952 Score: 311
Period size: 99 Copynumber: 3.5 Consensus size: 97
5986592 TTTTTTCCTA
** *
5986602 CTTGAGACAATTTCCCCTAGAAATACAAATTTTGAAATTATTTCACTTGAAACAAAATTTATCTC
1 CTTGAGACAATTTTTCCT-GAAA-ACAAATTTTGAAATTGTTTCACTTGAAACAAAATTTATCTC
*
5986667 ACTTGAGATTGTTCTCAAAACAAATTTCGTCTCG
64 ACTTGAGATTGTTCTCAAAACAAATTTCATCTCG
* * *
5986701 CTTGAGACAGTTTTTCTTCGAAACACAAATTCTGAAATTGTTTCACTTGAAACAAAATTTATCTC
1 CTTGAGACAATTTTTCCT-GAAA-ACAAATTTTGAAATTGTTTCACTTGAAACAAAATTTATCTC
* * *
5986766 AATTGAGATTATTTTTCTCAAAATAAATTTCATCTCG
64 ACTTGAG---ATTGTTCTCAAAACAAATTTCATCTCG
* * *
5986803 CTTGAGAC-ATTTTTCC-----ACAAATTTTGAAATTGTTTCATTTGAAACAAAATTGATATCAC
1 CTTGAGACAATTTTTCCTGAAAACAAATTTTGAAATTGTTTCACTTGAAACAAAATTTATCTCAC
* * * **
5986862 TTAAGATTGTTTTTCTTATAAACAATTTTTTTCTCG
66 TTGAGATTG---TTCTCA-AAACAAATTTCATCTCG
* * * * * *
5986898 CTTGAGACAGTTTCT-CTGGAAACATAAATCTTTGAGATCGTTTCTCTTGAAACAA
1 CTTGAGACAATTTTTCCT-GAAA-ACAAAT-TTTGAAATTGTTTCACTTGAAACAA
5986953 GTTTTGTCTA
Statistics
Matches: 203, Mismatches: 33, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
91 3 0.01
94 47 0.23
95 22 0.11
96 4 0.02
99 63 0.31
101 6 0.03
102 37 0.18
103 21 0.10
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (97 bp):
CTTGAGACAATTTTTCCTGAAAACAAATTTTGAAATTGTTTCACTTGAAACAAAATTTATCTCAC
TTGAGATTGTTCTCAAAACAAATTTCATCTCG
Found at i:5986853 original size:94 final size:95
Alignment explanation
Indices: 5986724--5986906 Score: 251
Period size: 94 Copynumber: 1.9 Consensus size: 95
5986714 TTCTTCGAAA
* * *
5986724 CACAAATTCTGAAATTGTTTCACTTGAAACAAAATTTATCTCAATTGAGATTATTTTTCTCA-AA
1 CACAAATTCTGAAATTGTTTCACTTGAAACAAAATTGATATCAATTAAGATTATTTTTCTCATAA
*
5986788 ATAAATTTCATCTCGCTTGAGACATTTTTC
66 ACAAATTTCATCTCGCTTGAGACATTTTTC
* * * * *
5986818 CACAAATTTTGAAATTGTTTCATTTGAAACAAAATTGATATCACTTAAGATTGTTTTTCTTATAA
1 CACAAATTCTGAAATTGTTTCACTTGAAACAAAATTGATATCAATTAAGATTATTTTTCTCATAA
* **
5986883 ACAATTTTTTTCTCGCTTGAGACA
66 ACAAATTTCATCTCGCTTGAGACA
5986907 GTTTCTCTGG
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
94 54 0.71
95 22 0.29
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.42
Consensus pattern (95 bp):
CACAAATTCTGAAATTGTTTCACTTGAAACAAAATTGATATCAATTAAGATTATTTTTCTCATAA
ACAAATTTCATCTCGCTTGAGACATTTTTC
Found at i:5986977 original size:36 final size:36
Alignment explanation
Indices: 5986929--5987053 Score: 113
Period size: 36 Copynumber: 3.6 Consensus size: 36
5986919 ACATAAATCT
5986929 TTGAGATC-GTTTCTCTTGAAACAAGTTTTGTCTAGG
1 TTGAGA-CAGTTTCTCTTGAAACAAGTTTTGTCTAGG
* ****
5986965 TTGAGACAGTTTCTCTTGAAA-TA--TAAACCT---
1 TTGAGACAGTTTCTCTTGAAACAAGTTTTGTCTAGG
**
5986995 TTGAGATTGTTTC-CTTGAAACAAAGTTTTGTCTAGG
1 TTGAGACAGTTTCTCTTGAAAC-AAGTTTTGTCTAGG
5987031 TTGAGACAGTTTCTCTTGAAACA
1 TTGAGACAGTTTCTCTTGAAACA
5987054 TAAACCTTTG
Statistics
Matches: 66, Mismatches: 14, Indels: 18
0.67 0.14 0.18
Matches are distributed among these distances:
29 7 0.11
30 11 0.17
31 1 0.02
33 6 0.09
35 2 0.03
36 31 0.47
37 8 0.12
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.39
Consensus pattern (36 bp):
TTGAGACAGTTTCTCTTGAAACAAGTTTTGTCTAGG
Found at i:5986991 original size:66 final size:66
Alignment explanation
Indices: 5986865--5987184 Score: 392
Period size: 66 Copynumber: 4.8 Consensus size: 66
5986855 ATATCACTTA
* * * * *
5986865 AGATTGTTTTTCTTATAAACAATTTTTTTCTCGCTTGAGACAGTTTCTCTGGAAACATAAATCTT
1 AGATTGTTTCTCTT-GAAACAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAATCTT
5986930 TG
65 TG
* * * * *
5986932 AGATCGTTTCTCTTGAAACAAGTTTTGTCTAGGTTGAGACAGTTTCTCTTGAAATATAAACCTTT
1 AGATTGTTTCTCTTGAAACAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAATCTTT
5986997 G
66 G
* * *
5986998 AGATTGTTTC-CTTGAAACAAAGTTTTGTCTAGGTTGAGACAGTTTCTCTTGAAACATAAACCTT
1 AGATTGTTTCTCTTGAAAC-AAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAATCTT
5987062 TG
65 TG
* * * **
5987064 AGATAGTTT-TCCTTGAAACAAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACACGAATCT
1 AGATTGTTTCT-CTTGAAAC-AAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAATCT
*
5987128 GTG
64 TTG
* * *
5987131 AGATTGTTTCTCTTGAAACAAATTATGTCTCTCTTGAGACAGTTTCTCTTGAAA
1 AGATTGTTTCTCTTGAAACAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAA
5987185 TAGAAATTCC
Statistics
Matches: 224, Mismatches: 25, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
65 8 0.04
66 139 0.62
67 76 0.34
68 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.40
Consensus pattern (66 bp):
AGATTGTTTCTCTTGAAACAAGTTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAATCTTT
G
Found at i:5987133 original size:133 final size:132
Alignment explanation
Indices: 5986865--5987184 Score: 392
Period size: 133 Copynumber: 2.4 Consensus size: 132
5986855 ATATCACTTA
* * * * * * * *
5986865 AGATTGTTTTTCTTATAAACAATTTTTTTCTCGCTTGAGACAGTTTCTCTGGAAACATAAATCTT
1 AGATTGTTTCTCTT-GAAACAAATTATGTCTAGCTTGAGACAGTTTCTCTTGAAACATAAACCTT
* * * *
5986930 TGAGATCGTTTCTCTTGAAACAAGTTTTGTCTAGGTTGAGACAGTTTCTCTTGAAATATAAACCT
65 TGAGATAGTTTCTCTTGAAACAAGTTTTGTCTAGCTTGAGACAGTTTCTCTTGAAACACAAACCT
*
5986995 TTG
130 GTG
* *
5986998 AGATTGTTTC-CTTGAAACAAAGTTTTGTCTAGGTTGAGACAGTTTCTCTTGAAACATAAACCTT
1 AGATTGTTTCTCTTGAAACAAA-TTATGTCTAGCTTGAGACAGTTTCTCTTGAAACATAAACCTT
** * * *
5987062 TGAGATAGTTT-TCCTTGAAACAAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACACGAAT
65 TGAGATAGTTTCT-CTTGAAAC-AAGTTTTGTCTAGCTTGAGACAGTTTCTCTTGAAACACAAAC
5987126 CTGTG
128 CTGTG
**
5987131 AGATTGTTTCTCTTGAAACAAATTATGTCTCTCTTGAGACAGTTTCTCTTGAAA
1 AGATTGTTTCTCTTGAAACAAATTATGTCTAGCTTGAGACAGTTTCTCTTGAAA
5987185 TAGAAATTCC
Statistics
Matches: 161, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
131 7 0.04
132 58 0.36
133 85 0.53
134 11 0.07
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.40
Consensus pattern (132 bp):
AGATTGTTTCTCTTGAAACAAATTATGTCTAGCTTGAGACAGTTTCTCTTGAAACATAAACCTTT
GAGATAGTTTCTCTTGAAACAAGTTTTGTCTAGCTTGAGACAGTTTCTCTTGAAACACAAACCTG
TG
Found at i:6000187 original size:39 final size:39
Alignment explanation
Indices: 6000144--6000252 Score: 107
Period size: 39 Copynumber: 2.8 Consensus size: 39
6000134 TAAAAAATAG
6000144 TTTAGAATGTTAATGTGAAATAATTTAAGAAAATAAGAA
1 TTTAGAATGTTAATGTGAAATAATTTAAGAAAATAAGAA
* * * *
6000183 TTTAGAACGTT-ATAGTAGAAA-ATTTTAAGAAATTAGGAA
1 TTTAGAATGTTAAT-GT-GAAATAATTTAAGAAAATAAGAA
* * *
6000222 TTTAGAATATTAGA-ATGAAATAATTTGAGAA
1 TTTAGAATGTTA-ATGTGAAATAATTTAAGAA
6000253 TTATGAATAC
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
38 6 0.11
39 45 0.80
40 4 0.07
41 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.17, T:0.34
Consensus pattern (39 bp):
TTTAGAATGTTAATGTGAAATAATTTAAGAAAATAAGAA
Found at i:6002403 original size:19 final size:19
Alignment explanation
Indices: 6002375--6002423 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
6002365 TATTAGTTAC
*
6002375 AATAATATAAAGTAATTAA
1 AATAATATAAACTAATTAA
*
6002394 AATAACATAAACTAATTAA
1 AATAATATAAACTAATTAA
6002413 AATAATATAAA
1 AATAATATAAA
6002424 AAGTTAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (19 bp):
AATAATATAAACTAATTAA
Found at i:6010789 original size:3 final size:3
Alignment explanation
Indices: 6010781--6010810 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
6010771 ATATTGTTTA
6010781 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6010811 CCAAAGGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:6014868 original size:15 final size:15
Alignment explanation
Indices: 6014841--6014910 Score: 115
Period size: 15 Copynumber: 4.7 Consensus size: 15
6014831 ATGATGGTAA
*
6014841 AAGAAGAAG-AAGATC
1 AAGAA-AAGAAAGATG
6014856 AAGAAAAGAAAGATG
1 AAGAAAAGAAAGATG
6014871 AAGAAAAGAAAGATG
1 AAGAAAAGAAAGATG
6014886 AAGAAAAGAAAGATG
1 AAGAAAAGAAAGATG
6014901 AAGAAAAGAA
1 AAGAAAAGAA
6014911 GGAAATGGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
14 3 0.06
15 50 0.94
ACGTcount: A:0.67, C:0.01, G:0.26, T:0.06
Consensus pattern (15 bp):
AAGAAAAGAAAGATG
Found at i:6014922 original size:30 final size:29
Alignment explanation
Indices: 6014857--6014925 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 29
6014847 AAGAAGATCA
*
6014857 AGAAAAGAAAGATGAAGAAAAGAAAGATG
1 AGAAAAGAAAGATGAAGAAAAGAAAAATG
6014886 AAGAAAAGAAAGATGAAGAAAAGAAGGAAATG
1 -AGAAAAGAAAGATGAAGAAAAGAA--AAATG
6014918 -GAAAAGAA
1 AGAAAAGAA
6014926 GAAAAAGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 32 0.89
32 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.06
Consensus pattern (29 bp):
AGAAAAGAAAGATGAAGAAAAGAAAAATG
Found at i:6023280 original size:20 final size:20
Alignment explanation
Indices: 6023239--6023285 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
6023229 AATGATTTTC
*
6023239 TTTTG-AAAGCAAAATTGGA
1 TTTTGAAAAGCAAAATTGAA
6023258 TTTTGAAAAGCAAAA-TGAAA
1 TTTTGAAAAGCAAAATTG-AA
6023278 TTTTGAAA
1 TTTTGAAA
6023286 TATGATTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 7 0.28
20 18 0.72
ACGTcount: A:0.47, C:0.04, G:0.17, T:0.32
Consensus pattern (20 bp):
TTTTGAAAAGCAAAATTGAA
Found at i:6025562 original size:3 final size:3
Alignment explanation
Indices: 6025547--6025622 Score: 134
Period size: 3 Copynumber: 25.3 Consensus size: 3
6025537 AAAATAACAA
* *
6025547 AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6025595 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
6025623 TATTCAAAGA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6026110 original size:3 final size:3
Alignment explanation
Indices: 6026102--6026168 Score: 118
Period size: 3 Copynumber: 22.7 Consensus size: 3
6026092 TAAACACACT
6026102 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
6026150 TAA TAA TAA T-T TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
6026169 TTCTTTAACC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 1 0.02
3 60 0.98
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:6027153 original size:18 final size:18
Alignment explanation
Indices: 6027126--6027160 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6027116 CCATAATGCA
*
6027126 AAATAGGTACCGATACTC
1 AAATAAGTACCGATACTC
6027144 AAATAAGTACCGATACT
1 AAATAAGTACCGATACT
6027161 ACTTTATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (18 bp):
AAATAAGTACCGATACTC
Found at i:6030692 original size:52 final size:50
Alignment explanation
Indices: 6030602--6030721 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 50
6030592 TTATAGTACA
*
6030602 TAGAACTCATCACCTCGATGTAATAAAATTTAATAAAAAAAATATATTTTAT
1 TAGAACTCATCATCTCGATGTAATAAAATTT-A-AAAAAAAATATATTTTAT
* * *
6030654 TAGAACTCATCATCTCGA-GATGAT-GAATTTGAAAAAAAAATATTTTTTAT
1 TAGAACTCATCATCTCGATG-TAATAAAATTT-AAAAAAAAATATATTTTAT
* *
6030704 TAGAACACGTCATCTCGA
1 TAGAACTCATCATCTCGA
6030722 CGTGACGAGT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
50 33 0.55
51 7 0.12
52 20 0.33
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (50 bp):
TAGAACTCATCATCTCGATGTAATAAAATTTAAAAAAAAATATATTTTAT
Found at i:6032929 original size:3 final size:3
Alignment explanation
Indices: 6032902--6032956 Score: 60
Period size: 3 Copynumber: 19.0 Consensus size: 3
6032892 ATTTATTTAT
* * * *
6032902 TTA TTT TTA TTA TTG TTG TTG TTA TTA TTA TTA -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6032949 TTA -TA TTA
1 TTA TTA TTA
6032957 CAAAAATACA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
2 4 0.09
3 42 0.91
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:6032945 original size:17 final size:17
Alignment explanation
Indices: 6032923--6032956 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6032913 ATTGTTGTTG
6032923 TTATTATTATTATATTA
1 TTATTATTATTATATTA
6032940 TTATTATTATTATATTA
1 TTATTATTATTATATTA
6032957 CAAAAATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATTATTATATTA
Found at i:6032956 original size:14 final size:14
Alignment explanation
Indices: 6032923--6032949 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6032913 ATTGTTGTTG
6032923 TTATTATTATTATA
1 TTATTATTATTATA
6032937 TTATTATTATTAT
1 TTATTATTATTAT
6032950 TATATTACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTATTATTATA
Found at i:6034030 original size:34 final size:34
Alignment explanation
Indices: 6033984--6034060 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
6033974 TCGGGCCAGG
6033984 TATATATATTTAAATTAAATATATAA-ATATT-ATA
1 TATATATATTTAAATTAAAT-TA-AATATATTAATA
* * *
6034018 TATATATTTTTAATTTAAATTAAATTTATTAATA
1 TATATATATTTAAATTAAATTAAATATATTAATA
6034052 TATATATAT
1 TATATATAT
6034061 ATATATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 2 0.05
33 6 0.16
34 29 0.78
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (34 bp):
TATATATATTTAAATTAAATTAAATATATTAATA
Found at i:6034056 original size:2 final size:2
Alignment explanation
Indices: 6034049--6034075 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6034039 AAATTTATTA
6034049 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
6034076 ATTATTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6034766 original size:32 final size:31
Alignment explanation
Indices: 6034709--6034770 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
6034699 TTTGAAATTA
6034709 ATTTATTTAATTACAATTTAGTCCTTGATTTT
1 ATTTATTTAATTACAATTTAGTCCTT-ATTTT
* *
6034741 ATTTATTTTATTTCAATTTTA-TCCTTATTT
1 ATTTATTTAATTACAA-TTTAGTCCTTATTT
6034771 AAAATTAGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 4 0.15
32 19 0.70
33 4 0.15
ACGTcount: A:0.26, C:0.10, G:0.03, T:0.61
Consensus pattern (31 bp):
ATTTATTTAATTACAATTTAGTCCTTATTTT
Found at i:6035280 original size:22 final size:22
Alignment explanation
Indices: 6035255--6035296 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
6035245 AGGTCCCTAG
*
6035255 ACTTTAGATTTTTTACACTTAA
1 ACTTTAGATATTTTACACTTAA
6035277 ACTTTAGATATTTTACACTT
1 ACTTTAGATATTTTACACTT
6035297 TAGTCCCTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.14, G:0.05, T:0.50
Consensus pattern (22 bp):
ACTTTAGATATTTTACACTTAA
Found at i:6037647 original size:18 final size:18
Alignment explanation
Indices: 6037624--6037661 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
6037614 TATGTGCAAT
6037624 TATACATAATCAAACAAG
1 TATACATAATCAAACAAG
6037642 TATACATAATCAAACAAG
1 TATACATAATCAAACAAG
6037660 TA
1 TA
6037662 ATAAAGTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.24
Consensus pattern (18 bp):
TATACATAATCAAACAAG
Found at i:6038678 original size:209 final size:210
Alignment explanation
Indices: 6038317--6038730 Score: 695
Period size: 209 Copynumber: 2.0 Consensus size: 210
6038307 ATGGCTACTT
6038317 TCATAGCTCTTACAATCATAAGTAATTAAACACAATGAACAAAGCAAATAGAGAAAAAATAAAAA
1 TCATAGCTCTTACAATCATAAGTAATTAAACACAATGAACAAAGCAAATAGAGAAAAAATAAAAA
* *
6038382 CTTTAAATCATTCAGTAAAGCAAACACTTAATCATCCGTAATAACCCACACCAAATAAGGTTTAG
66 CTTTAAATCATTCAGTAAAGCAAACACTTAATCATCCATAATAACCAACACCAAATAAGGTTTAG
** *
6038447 TTCATGGTGGGGTTCGAATCATCCATGAAAATAATTGGTTCCATACAACCTAATAAATCGAATGA
131 TTCATGGTGGGGTTCGAATCATCCATGAAAATAATACGTTCCATACAACCCAATAAATCGAATGA
6038512 AAATAAAAGCTTAAA
196 AAATAAAAGCTTAAA
* *** * *
6038527 TCATAGCTCTTACAATCCTAAGTAATTAAGTGCAATGAGCAAAGCAAATAGAGAAAACATAAAAA
1 TCATAGCTCTTACAATCATAAGTAATTAAACACAATGAACAAAGCAAATAGAGAAAAAATAAAAA
* *
6038592 C-TTAAATCATTCATTAAAGCAAACACTTAATCATCCATAATAACCAACCCCAAATAAGGTTTAG
66 CTTTAAATCATTCAGTAAAGCAAACACTTAATCATCCATAATAACCAACACCAAATAAGGTTTAG
*
6038656 TTCATGGTGGGGTTTGAATCATCCATGAAAATAATACGTTCCATACAACCCAATAAATCGAATGA
131 TTCATGGTGGGGTTCGAATCATCCATGAAAATAATACGTTCCATACAACCCAATAAATCGAATGA
6038721 AAATAAAAGC
196 AAATAAAAGC
6038731 ATAAGGGTGG
Statistics
Matches: 190, Mismatches: 14, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
209 130 0.68
210 60 0.32
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (210 bp):
TCATAGCTCTTACAATCATAAGTAATTAAACACAATGAACAAAGCAAATAGAGAAAAAATAAAAA
CTTTAAATCATTCAGTAAAGCAAACACTTAATCATCCATAATAACCAACACCAAATAAGGTTTAG
TTCATGGTGGGGTTCGAATCATCCATGAAAATAATACGTTCCATACAACCCAATAAATCGAATGA
AAATAAAAGCTTAAA
Found at i:6038872 original size:14 final size:14
Alignment explanation
Indices: 6038853--6038879 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6038843 TTTCAATTTT
6038853 GAGTTATTTGAGTC
1 GAGTTATTTGAGTC
6038867 GAGTTATTTGAGT
1 GAGTTATTTGAGT
6038880 GACCTCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.04, G:0.30, T:0.44
Consensus pattern (14 bp):
GAGTTATTTGAGTC
Found at i:6040082 original size:151 final size:149
Alignment explanation
Indices: 6039699--6040083 Score: 408
Period size: 151 Copynumber: 2.6 Consensus size: 149
6039689 GTCACCAATT
* * *
6039699 TCATTATTTCTTCAATTCCTCCTTCATTTTAAGCCCATTT-TTTTTACCAAATTTGAACCACATG
1 TCATTATTTCTTCAATTCGTCATTTATTTTAAG----TTTGTTTTTACCAAATTTGAACCACATG
*
6039763 CTCCTAAACCATAGTAG---ACATGTGTACATTCAATTCATCTTTTTGATAACAATGTTTTTCAT
62 CTCCT-AACCATAGTAGAATACATGTGTACATTCAATTCATCTTTTTGATAACAATATTTTT-AT
* * *
6039825 TTTATTCCTTTAATTTTTCATAATC
125 TTTAGTCCTTCAAATTTTCATAATC
* * *
6039850 TCCTTATTTCTTCAATTCGTCATTTATTTTAAGTTTGTTTTTACCAAATTTGAGCCAAATGCTCC
1 TCATTATTTCTTCAATTCGTCATTTATTTTAAGTTTGTTTTTACCAAATTTGAACCACATGCTCC
* * * * *
6039915 TAAGTCATAGTGGAATACATGTTTACTTTCAATTCCTCTTTTTGATAACAA-ATATTTTATTTGT
66 TAA-CCATAGTAGAATACATGTGTACATTCAATTCATCTTTTTGATAACAATAT-TTTTA-TT-T
*
6039979 TAGT-CTTCAAATTTTCATTATC
127 TAGTCCTTCAAATTTTCATAATC
* * *
6040001 TCATTGTTAT-TTCAATTTGTCATTTATTTTAA-TTTCGTTTTTACCAAATTTAAACCACATGCT
1 TCATTATT-TCTTCAATTCGTCATTTATTTTAAGTTT-GTTTTTACCAAATTTGAACCACATGCT
* *
6040064 CATATACCATAATAGAATAC
64 CCTA-ACCATAGTAGAATAC
6040084 TTATGTAACT
Statistics
Matches: 197, Mismatches: 26, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
147 5 0.03
148 34 0.17
150 5 0.03
151 147 0.75
152 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.46
Consensus pattern (149 bp):
TCATTATTTCTTCAATTCGTCATTTATTTTAAGTTTGTTTTTACCAAATTTGAACCACATGCTCC
TAACCATAGTAGAATACATGTGTACATTCAATTCATCTTTTTGATAACAATATTTTTATTTTAGT
CCTTCAAATTTTCATAATC
Found at i:6040351 original size:2 final size:2
Alignment explanation
Indices: 6040344--6040378 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
6040334 TAAAAGAATA
6040344 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6040379 GGTTAGATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:6042375 original size:21 final size:20
Alignment explanation
Indices: 6042350--6042422 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
6042340 CCAAGCCTTC
6042350 GGTATGGATACATGTTCATCT
1 GGTATGGATACA-GTTCATCT
* ** *
6042371 GGTATGGATATAAATCCTCT
1 GGTATGGATACAGTTCATCT
*
6042391 GGTATAGG-TACCAGTTTATCT
1 GGTAT-GGATA-CAGTTCATCT
6042412 GGTATGGATAC
1 GGTATGGATAC
6042423 CATCCCATCG
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
20 15 0.38
21 25 0.62
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.36
Consensus pattern (20 bp):
GGTATGGATACAGTTCATCT
Found at i:6047529 original size:2 final size:2
Alignment explanation
Indices: 6047522--6047580 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
6047512 TGTTGAGTGC
6047522 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6047564 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
6047581 ATCTATGTGA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6047765 original size:13 final size:13
Alignment explanation
Indices: 6047747--6047771 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6047737 TGTCTACGAG
6047747 AAGATATAAGACC
1 AAGATATAAGACC
6047760 AAGATATAAGAC
1 AAGATATAAGAC
6047772 ATGTAATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.16, T:0.16
Consensus pattern (13 bp):
AAGATATAAGACC
Found at i:6051048 original size:18 final size:19
Alignment explanation
Indices: 6051019--6051055 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
6051009 AAAAATCTGT
6051019 TTCGTCCTTAAAATTTTAA
1 TTCGTCCTTAAAATTTTAA
6051038 TTCGTCC-TAAAATTTTAA
1 TTCGTCCTTAAAATTTTAA
6051056 GTCATCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.46
Consensus pattern (19 bp):
TTCGTCCTTAAAATTTTAA
Found at i:6054754 original size:35 final size:35
Alignment explanation
Indices: 6054708--6054776 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
6054698 GTATCTGTTC
6054708 AAATATAACTCTCAACCATTTGACATTAAACGTTT
1 AAATATAACTCTCAACCATTTGACATTAAACGTTT
*
6054743 AAATATAACTCTCAACCATTTGACATTGAACGTT
1 AAATATAACTCTCAACCATTTGACATTAAACGTT
6054777 CACGTCCCTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.33
Consensus pattern (35 bp):
AAATATAACTCTCAACCATTTGACATTAAACGTTT
Found at i:6054891 original size:62 final size:62
Alignment explanation
Indices: 6054794--6054916 Score: 228
Period size: 62 Copynumber: 2.0 Consensus size: 62
6054784 CTGACATTCC
*
6054794 CAATACTTGAACTCGAGACCTCTAAAATCGCTTGATTCGTAAAAAGGTGATTATTTACCACT
1 CAATACTTGAACTCGAGACCTCGAAAATCGCTTGATTCGTAAAAAGGTGATTATTTACCACT
*
6054856 CAATACTTGAACTCGAGACCTCGGAAATCGCTTGATTCGTAAAAAGGTGATTATTTACCAC
1 CAATACTTGAACTCGAGACCTCGAAAATCGCTTGATTCGTAAAAAGGTGATTATTTACCAC
6054917 CGAGATCGCT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.29
Consensus pattern (62 bp):
CAATACTTGAACTCGAGACCTCGAAAATCGCTTGATTCGTAAAAAGGTGATTATTTACCACT
Found at i:6055361 original size:16 final size:16
Alignment explanation
Indices: 6055340--6055374 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
6055330 TACAATTTAT
6055340 TAAATT-TTATATATAA
1 TAAATTATTAT-TATAA
6055356 TAAATTATTATTATAA
1 TAAATTATTATTATAA
6055372 TAA
1 TAA
6055375 TATAAATCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAAATTATTATTATAA
Found at i:6057526 original size:8 final size:8
Alignment explanation
Indices: 6057513--6057538 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
6057503 GACTAAAATG
6057513 GAAACTTT
1 GAAACTTT
6057521 GAAACTTT
1 GAAACTTT
6057529 GAAACTTT
1 GAAACTTT
6057537 GA
1 GA
6057539 GGTATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (8 bp):
GAAACTTT
Found at i:6059144 original size:23 final size:23
Alignment explanation
Indices: 6059118--6059181 Score: 101
Period size: 23 Copynumber: 2.7 Consensus size: 23
6059108 TATGTAGTCC
6059118 TTCGGGACAATTCTATGCGGTCA
1 TTCGGGACAATTCTATGCGGTCA
**
6059141 TTCGGGACAATTCTATATGGTCA
1 TTCGGGACAATTCTATGCGGTCA
6059164 TTCGGGACAAATTCTATG
1 TTCGGGAC-AATTCTATG
6059182 TACCCCTAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
23 29 0.78
24 8 0.22
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (23 bp):
TTCGGGACAATTCTATGCGGTCA
Found at i:6063508 original size:21 final size:21
Alignment explanation
Indices: 6063475--6063523 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
6063465 TTCTACGTGG
* *
6063475 TCCTTCGGGACATATATGTAA
1 TCCTTTGGAACATATATGTAA
*
6063496 TCCTTTGGAACATATATGTTA
1 TCCTTTGGAACATATATGTAA
*
6063517 TACTTTG
1 TCCTTTG
6063524 TTACACTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (21 bp):
TCCTTTGGAACATATATGTAA
Found at i:6063621 original size:23 final size:24
Alignment explanation
Indices: 6063590--6063640 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
6063580 ATATGTGTTA
* *
6063590 TATGTGGTCCATCGGGAC-AATTC
1 TATGCGGTCCATCAGGACAAATTC
* *
6063613 TATGCGGTCCTTTAGGACAAATTC
1 TATGCGGTCCATCAGGACAAATTC
6063637 TATG
1 TATG
6063641 TGCCCCTAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (24 bp):
TATGCGGTCCATCAGGACAAATTC
Found at i:6064672 original size:31 final size:29
Alignment explanation
Indices: 6064634--6064710 Score: 127
Period size: 29 Copynumber: 2.6 Consensus size: 29
6064624 AAGGTCAAAT
6064634 ATATTTTATCTAAAATTTAAGAATTAAATTA
1 ATATTTTATCTAAAATTTAA-AA-TAAATTA
6064665 ATATTTTATCTAAAATTTAAAATAAATTA
1 ATATTTTATCTAAAATTTAAAATAAATTA
*
6064694 ATATTATATCTAAAATT
1 ATATTTTATCTAAAATT
6064711 CAAGTATCAT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
29 23 0.51
30 2 0.04
31 20 0.44
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (29 bp):
ATATTTTATCTAAAATTTAAAATAAATTA
Found at i:6069416 original size:17 final size:18
Alignment explanation
Indices: 6069379--6069419 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
6069369 CTATTATGTA
*
6069379 TTTAATTTATTTAAGTAT
1 TTTACTTTATTTAAGTAT
6069397 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGTAT
6069414 TTTACT
1 TTTACT
6069420 AATATAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTACTTTATTTAAGTAT
Found at i:6069617 original size:110 final size:111
Alignment explanation
Indices: 6069489--6069701 Score: 401
Period size: 110 Copynumber: 1.9 Consensus size: 111
6069479 ATATATCTTT
*
6069489 ACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
1 ACACTTTACTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
*
6069554 TGA-TTATTTAATGCATGATTATTAGATTAAGAATTAAATATCTCG
66 TGATTTATTTAATACATGATTATTAGATTAAGAATTAAATATCTCG
6069599 ACACTTTACTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
1 ACACTTTACTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
6069664 TGATTTATTTAATACATGATTATTAGATTAAGAATTAA
66 TGATTTATTTAATACATGATTATTAGATTAAGAATTAA
6069702 TTTTTGTAAT
Statistics
Matches: 100, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
110 67 0.67
111 33 0.33
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.44
Consensus pattern (111 bp):
ACACTTTACTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
TGATTTATTTAATACATGATTATTAGATTAAGAATTAAATATCTCG
Found at i:6071384 original size:9 final size:9
Alignment explanation
Indices: 6071366--6071404 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
6071356 TCAGGATGAC
6071366 GACGACGAT
1 GACGACGAT
*
6071375 GACGATGAT
1 GACGACGAT
*
6071384 GACGACGAC
1 GACGACGAT
6071393 GACGACGAT
1 GACGACGAT
6071402 GAC
1 GAC
6071405 AGCGAGGAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.33, T:0.10
Consensus pattern (9 bp):
GACGACGAT
Found at i:6071385 original size:21 final size:21
Alignment explanation
Indices: 6071360--6071403 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
6071350 ACCTGCTCAG
*
6071360 GATGACGACGACGATGACGAT
1 GATGACGACGACGACGACGAT
6071381 GATGACGACGACGACGACGAT
1 GATGACGACGACGACGACGAT
6071402 GA
1 GA
6071404 CAGCGAGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.34, C:0.20, G:0.34, T:0.11
Consensus pattern (21 bp):
GATGACGACGACGACGACGAT
Found at i:6078489 original size:10 final size:10
Alignment explanation
Indices: 6078474--6078514 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
6078464 TTCATCAAAC
6078474 CAAATTCTCT
1 CAAATTCTCT
*
6078484 CAAATTTTCT
1 CAAATTCTCT
*
6078494 CAATTTCTCT
1 CAAATTCTCT
*
6078504 CAAATACTCT
1 CAAATTCTCT
6078514 C
1 C
6078515 TCTTTAAGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:6078589 original size:17 final size:18
Alignment explanation
Indices: 6078552--6078592 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
6078542 ATATTATGTA
*
6078552 TTTAATTTATTTAAGTAT
1 TTTACTTTATTTAAGTAT
6078570 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGTAT
6078587 TTTACT
1 TTTACT
6078593 AATATAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTACTTTATTTAAGTAT
Found at i:6080279 original size:18 final size:18
Alignment explanation
Indices: 6080251--6080291 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
6080241 CACAGTAGCC
*
6080251 ACCGCAACCATTTATGAT
1 ACCGCAACCATATATGAT
* *
6080269 GCCGCAGCCATATATGAT
1 ACCGCAACCATATATGAT
6080287 ACCGC
1 ACCGC
6080292 CATCGCCTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (18 bp):
ACCGCAACCATATATGAT
Found at i:6080623 original size:12 final size:12
Alignment explanation
Indices: 6080606--6080630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6080596 ATCTGCTCAG
6080606 GACGACGACGAT
1 GACGACGACGAT
6080618 GACGACGACGAT
1 GACGACGACGAT
6080630 G
1 G
6080631 GTGATGATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.36, T:0.08
Consensus pattern (12 bp):
GACGACGACGAT
Found at i:6084906 original size:21 final size:19
Alignment explanation
Indices: 6084880--6084920 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
6084870 TCGAGTCATT
6084880 TGATCATTAAAATTTATAAAA
1 TGATCATT-AAA-TTATAAAA
*
6084901 TGATCATTTAATTATAAAA
1 TGATCATTAAATTATAAAA
6084920 T
1 T
6084921 ATTGTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 2 0.11
21 8 0.42
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (19 bp):
TGATCATTAAATTATAAAA
Found at i:6091663 original size:29 final size:29
Alignment explanation
Indices: 6091631--6091686 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
6091621 CCATCAGGAG
*
6091631 ATTCAAAATCCTTCACAAATCGACCTTAT
1 ATTCAAAAACCTTCACAAATCGACCTTAT
6091660 ATTCAAAAACCTTCACAAATCGACCTT
1 ATTCAAAAACCTTCACAAATCGACCTT
6091687 TCACTCGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.39, C:0.29, G:0.04, T:0.29
Consensus pattern (29 bp):
ATTCAAAAACCTTCACAAATCGACCTTAT
Found at i:6104431 original size:46 final size:46
Alignment explanation
Indices: 6104378--6104478 Score: 150
Period size: 46 Copynumber: 2.2 Consensus size: 46
6104368 TTAAAACCCT
*
6104378 TATTTTGATATGTTTGAGTC-TAGATTTATTTAAATATCGGTCCGTA
1 TATTTTGATATGTTTGAGTCAT-GATTTATTTAAATATCGGTCCGAA
* * *
6104424 TATTTTGATATGTTTGAGTCATGATTTATTTAAATGTTGGTCTGAA
1 TATTTTGATATGTTTGAGTCATGATTTATTTAAATATCGGTCCGAA
6104470 TATTTTGAT
1 TATTTTGAT
6104479 TTATTTTTGG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
46 49 0.98
47 1 0.02
ACGTcount: A:0.26, C:0.06, G:0.18, T:0.50
Consensus pattern (46 bp):
TATTTTGATATGTTTGAGTCATGATTTATTTAAATATCGGTCCGAA
Done.