Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000851.1 Hibiscus syriacus cultivar Beakdansim tig00001644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7304151
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 31
Found at i:722260 original size:136 final size:137
Alignment explanation
Indices: 722095--722348 Score: 316
Period size: 138 Copynumber: 1.9 Consensus size: 137
722085 GCATGTAATG
* * * *
722095 GTTATCGATCAATTTTTTGTAATGCATAACACTGCATTTTCGTAACAATA-TTGTGTACTTTTGG
1 GTTACCGATCAATTTTTTGTAATGCATAACACTACATTTTCGTAACAATACTTGTGTACTTTCGA
** *
722159 CACTAGACGTGCAAT-CATGGTATTCATAATTAGTTTGTGAATCACCATTTCGTTATACAATTAT
66 CACTAGACGTGC-ATCCATGAAATTCATAATAAGTTTGTGAATCACCATTTCGTTATACAATTAT
722223 GTATAAAA
130 GTATAAAA
* * * *
722231 GTTACCGATCGATTTTGTT-TAATGCATAACAGTACATTTTCGTATCAGTACTTTGTGTACTTTC
1 GTTACCGATCAATTTT-TTGTAATGCATAACACTACATTTTCGTAACAATAC-TTGTGTACTTTC
* * * **
722295 GACACTATATGTGCATCCATGAAATTCATAATAAGTTTTTGAATTTCCATTTCG
64 GACACTAGACGTGCATCCATGAAATTCATAATAAGTTTGTGAATCACCATTTCG
722349 GTACTTTGGT
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
136 41 0.42
137 4 0.04
138 53 0.54
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.41
Consensus pattern (137 bp):
GTTACCGATCAATTTTTTGTAATGCATAACACTACATTTTCGTAACAATACTTGTGTACTTTCGA
CACTAGACGTGCATCCATGAAATTCATAATAAGTTTGTGAATCACCATTTCGTTATACAATTATG
TATAAAA
Found at i:726160 original size:37 final size:38
Alignment explanation
Indices: 726105--726235 Score: 143
Period size: 37 Copynumber: 3.6 Consensus size: 38
726095 TATTTAGTAT
*
726105 ATATATTAAT-ATATATAGTTTTTGAAAACA-TTTTGA
1 ATATATTTATAATATATAGTTTTTGAAAACATTTTTGA
*
726141 ATATATTTATAATATATAGTTTTTTAAAACATTTTTGA
1 ATATATTTATAATATATAGTTTTTGAAAACATTTTTGA
* * *
726179 ATGTA--TATAATATATAG-TTTTG-AAGCATTTTTCTA
1 ATATATTTATAATATATAGTTTTTGAAAACATTTTT-GA
*
726214 ATATATATATAATAT-T-GTTTTT
1 ATATATTTATAATATATAGTTTTT
726236 TTAAAATATA
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
34 9 0.11
35 10 0.12
36 26 0.32
37 27 0.33
38 10 0.12
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (38 bp):
ATATATTTATAATATATAGTTTTTGAAAACATTTTTGA
Found at i:726749 original size:13 final size:13
Alignment explanation
Indices: 726723--726760 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
726713 TAAGTGTTAT
726723 AATTAGTCTTTAAG
1 AATTA-TCTTTAAG
726737 ATATTAT-TTTAAG
1 A-ATTATCTTTAAG
726750 AATTATCTTTA
1 AATTATCTTTA
726761 GCTTGTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 5 0.23
13 11 0.50
14 2 0.09
15 4 0.18
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (13 bp):
AATTATCTTTAAG
Found at i:727375 original size:21 final size:21
Alignment explanation
Indices: 727335--727418 Score: 107
Period size: 21 Copynumber: 4.0 Consensus size: 21
727325 ATCAGATTGT
727335 CCAGGGGGTACAGATT-CCCC
1 CCAGGGGGTACAGATTCCCCC
*
727355 CCAGGGGGAACAGATTCCCCC
1 CCAGGGGGTACAGATTCCCCC
* *
727376 CCAGGGGGTACCGATTCCCCA
1 CCAGGGGGTACAGATTCCCCC
** *
727397 TGAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACAGATTCCCCC
727418 C
1 C
727419 ACGCTCCAAG
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 15 0.27
21 40 0.73
ACGTcount: A:0.19, C:0.37, G:0.30, T:0.14
Consensus pattern (21 bp):
CCAGGGGGTACAGATTCCCCC
Found at i:727381 original size:41 final size:42
Alignment explanation
Indices: 727335--727418 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 42
727325 ATCAGATTGT
727335 CCAGGGGGTACAGATTCCCC-CCAGGGGGAACAGATTCCCCC
1 CCAGGGGGTACAGATTCCCCACCAGGGGGAACAGATTCCCCC
* ** * *
727376 CCAGGGGGTACCGATTCCCCATGAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACAGATTCCCCACCAGGGGGAACAGATTCCCCC
727418 C
1 C
727419 ACGCTCCAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 19 0.51
42 18 0.49
ACGTcount: A:0.19, C:0.37, G:0.30, T:0.14
Consensus pattern (42 bp):
CCAGGGGGTACAGATTCCCCACCAGGGGGAACAGATTCCCCC
Found at i:728445 original size:16 final size:16
Alignment explanation
Indices: 728399--728448 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
728389 CTACTATTAT
*
728399 TTATTATTTTATTATA
1 TTATTATTTTATTTTA
** *
728415 TT-TCCTTTTA-ATTA
1 TTATTATTTTATTTTA
728429 TTATTATTTTATTTTA
1 TTATTATTTTATTTTA
728445 TTAT
1 TTAT
728449 ATCTTTTCAA
Statistics
Matches: 25, Mismatches: 7, Indels: 4
0.69 0.19 0.11
Matches are distributed among these distances:
14 4 0.16
15 12 0.48
16 9 0.36
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTATTTTATTTTA
Found at i:728786 original size:16 final size:16
Alignment explanation
Indices: 728765--728795 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
728755 TCCCTACAGT
*
728765 TTTGATGTGCAATTCG
1 TTTGATGTGAAATTCG
728781 TTTGATGTGAAATTC
1 TTTGATGTGAAATTC
728796 TTTCATTGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.45
Consensus pattern (16 bp):
TTTGATGTGAAATTCG
Found at i:728866 original size:10 final size:10
Alignment explanation
Indices: 728828--728912 Score: 59
Period size: 10 Copynumber: 8.6 Consensus size: 10
728818 TTAACAATTC
728828 TTTTTTATTT
1 TTTTTTATTT
* *
728838 TGTTTTA-CT
1 TTTTTTATTT
*
728847 TATTTT-TTT
1 TTTTTTATTT
728856 TTTTTTA-TT
1 TTTTTTATTT
728865 TTTTTTATTCT
1 TTTTTTATT-T
* * **
728876 CTTTTAACAT
1 TTTTTTATTT
*
728886 TTTTTTATAT
1 TTTTTTATTT
728896 TTTTTTATTT
1 TTTTTTATTT
728906 TTCTTTT
1 TT-TTTT
728913 CTGAAATTTA
Statistics
Matches: 57, Mismatches: 13, Indels: 9
0.72 0.16 0.11
Matches are distributed among these distances:
9 21 0.37
10 26 0.46
11 10 0.18
ACGTcount: A:0.13, C:0.06, G:0.01, T:0.80
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:728972 original size:14 final size:14
Alignment explanation
Indices: 728955--728993 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
728945 TTTTTCTTTA
728955 AACATTTTTTATAT
1 AACATTTTTTATAT
728969 AACATTTTTTATAT
1 AACATTTTTTATAT
728983 AACATTTTTTA
1 AACATTTTTTA
728994 AAATTTAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (14 bp):
AACATTTTTTATAT
Found at i:729054 original size:16 final size:15
Alignment explanation
Indices: 729016--729058 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
729006 TCCTTCTTTG
729016 ATTTATTTT-TTTAA
1 ATTTATTTTATTTAA
* *
729030 ATTTTTTTTATTTGAT
1 ATTTATTTTATTT-AA
729046 ATTTATTTTATTT
1 ATTTATTTTATTT
729059 TATAATCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 8 0.33
15 3 0.12
16 13 0.54
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (15 bp):
ATTTATTTTATTTAA
Found at i:730996 original size:21 final size:21
Alignment explanation
Indices: 730950--731002 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
730940 AGTTGTTTTG
*
730950 GTATCGATACTCCCATGGTAGA
1 GTATCGATACTCCCATAG-AGA
730972 GTATCGATACTCCCAATAG-GA
1 GTATCGATACTCCC-ATAGAGA
730993 GTATCGATAC
1 GTATCGATAC
731003 CAAGGTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 12 0.41
22 14 0.48
23 3 0.10
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (21 bp):
GTATCGATACTCCCATAGAGA
Found at i:731755 original size:15 final size:15
Alignment explanation
Indices: 731735--731766 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
731725 TATTTTCATG
731735 GCACTAAGCTTATTA
1 GCACTAAGCTTATTA
731750 GCACTAAGCTTATTA
1 GCACTAAGCTTATTA
731765 GC
1 GC
731767 TCAACGTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (15 bp):
GCACTAAGCTTATTA
Found at i:734367 original size:48 final size:48
Alignment explanation
Indices: 734274--734369 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
734264 CATACCTTGT
* * * *
734274 GTATTATGGTTATCGATCGATTTTGTTTAATGCATAAGTTTCATTTTC
1 GTATGATGATTATCGATCAATTTTGTTTAATGCATAAGTTGCATTTTC
*
734322 GTATGATGATTATCGATCAATTTTGTTTAATGTA-AATGTTGCATTTTC
1 GTATGATGATTATCGATCAATTTTGTTTAATGCATAA-GTTGCATTTTC
734370 TTATCTGTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.25, C:0.09, G:0.17, T:0.49
Consensus pattern (48 bp):
GTATGATGATTATCGATCAATTTTGTTTAATGCATAAGTTGCATTTTC
Found at i:734473 original size:53 final size:53
Alignment explanation
Indices: 734389--734504 Score: 162
Period size: 53 Copynumber: 2.2 Consensus size: 53
734379 CTATATGTAC
* *
734389 TTTCGGCACTATGTGTGCACCCATGACATTCATAATGAGTTTATGAATGACCA
1 TTTCGGCACTATGTGTGCACCAAGGACATTCATAATGAGTTTATGAATGACCA
* * * *
734442 TTTCGGCACTGTGTGTGCATCCAAGGA-ATTCATAATGATTTTTTGAATTACCA
1 TTTCGGCACTATGTGTGCA-CCAAGGACATTCATAATGAGTTTATGAATGACCA
734495 TTTCGGCACT
1 TTTCGGCACT
734505 TAGGTGAACT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 51 0.91
54 5 0.09
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (53 bp):
TTTCGGCACTATGTGTGCACCAAGGACATTCATAATGAGTTTATGAATGACCA
Found at i:739261 original size:24 final size:24
Alignment explanation
Indices: 739234--739311 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
739224 TCAACATACT
739234 TTTTGTATGATGGTTATCAATCGA
1 TTTTGTATGATGGTTATCAATCGA
* * ** ****
739258 TTTTGTTTAATGCATAAGTTTC-A
1 TTTTGTATGATGGTTATCAATCGA
739281 TTTTTGTATGATGGTTATCAATCGA
1 -TTTTGTATGATGGTTATCAATCGA
739306 TTTTGT
1 TTTTGT
739312 TTAATGCATA
Statistics
Matches: 36, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
23 1 0.03
24 34 0.94
25 1 0.03
ACGTcount: A:0.23, C:0.08, G:0.18, T:0.51
Consensus pattern (24 bp):
TTTTGTATGATGGTTATCAATCGA
Found at i:739291 original size:48 final size:48
Alignment explanation
Indices: 739233--739337 Score: 183
Period size: 48 Copynumber: 2.2 Consensus size: 48
739223 TTCAACATAC
*
739233 TTTTTGTATGATGGTTATCAATCGATTTTGTTTAATGCATAAGTTTCA
1 TTTTTGTATGATGGTTATCAATCGATTTTGTTTAATGCATAAGTTGCA
*
739281 TTTTTGTATGATGGTTATCAATCGATTTTGTTTAATGCATATGTTGCA
1 TTTTTGTATGATGGTTATCAATCGATTTTGTTTAATGCATAAGTTGCA
*
739329 TTTTCGTAT
1 TTTTTGTAT
739338 CAGTACTATA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.23, C:0.09, G:0.17, T:0.51
Consensus pattern (48 bp):
TTTTTGTATGATGGTTATCAATCGATTTTGTTTAATGCATAAGTTGCA
Found at i:739467 original size:53 final size:52
Alignment explanation
Indices: 739359--739467 Score: 121
Period size: 53 Copynumber: 2.1 Consensus size: 52
739349 GTACTTTCGG
*
739359 CACTATGTGCGCACCCATGAGATTCAAATGAGTTCATGAATGACCATTTCGA
1 CACTATGTGCGCACCCATGAGATTCAAATGAGTTCATGAATGACCATTTCAA
* * * ** * *
739411 CACTATGTGTGCATCCATG-GAATTCATAATGATTTTGTGAATTATCATTTCAA
1 CACTATGTGCGCACCCATGAG-ATTCA-AATGAGTTCATGAATGACCATTTCAA
739464 CACT
1 CACT
739468 TAGGTGCAAC
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
51 1 0.02
52 22 0.47
53 24 0.51
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (52 bp):
CACTATGTGCGCACCCATGAGATTCAAATGAGTTCATGAATGACCATTTCAA
Found at i:741365 original size:15 final size:15
Alignment explanation
Indices: 741345--741387 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
741335 AGTCATCTAT
741345 AATTATTTAAATATG
1 AATTATTTAAATATG
* *
741360 AATTATCTAAATATT
1 AATTATTTAAATATG
741375 AATTATTTAAATA
1 AATTATTTAAATA
741388 AATTAATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATTATTTAAATATG
Found at i:741853 original size:45 final size:40
Alignment explanation
Indices: 741772--741851 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
741762 ATAACTAAAG
741772 TTTAGTTTTTATTTCATTTTAATACCCCTTCATTTAAAAT
1 TTTAGTTTTTATTTCATTTTAATACCCCTTCATTTAAAAT
* * *
741812 TTTAGTTTTTATTTTATTTTATTA-CCC-TCATTCAAAAT
1 TTTAGTTTTTATTTCATTTTAATACCCCTTCATTTAAAAT
741850 TT
1 TT
741852 AATGTTAACT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 12 0.32
39 3 0.08
40 22 0.59
ACGTcount: A:0.26, C:0.14, G:0.03, T:0.57
Consensus pattern (40 bp):
TTTAGTTTTTATTTCATTTTAATACCCCTTCATTTAAAAT
Found at i:744881 original size:70 final size:70
Alignment explanation
Indices: 744738--744964 Score: 296
Period size: 70 Copynumber: 3.3 Consensus size: 70
744728 TGCTAGGCTA
*
744738 CATATTCGGTTTAGCACTAGAGTGTATACCCAAGACA-TTAGTGCAGGTGATGGGCACGACCTTA
1 CATATTCGGTTTAGCACTAGAGTGTATACCCAAGACACTTAGTGCAGGTGGTGGGCACGACCTTA
744802 TGTGT
66 TGTGT
* * * *
744807 CATATCCGGTTTATCACTAAAGTGTATACCCAAGACACTTAATGCAGGTGGTGGGCACGACCTTA
1 CATATTCGGTTTAGCACTAGAGTGTATACCCAAGACACTTAGTGCAGGTGGTGGGCACGACCTTA
*
744872 TGTGC
66 TGTGT
** *** * * * *
744877 CATATTCAATTTAGCACTAGAGTGTATATAAAAGACACTTAGTG-TGTATGGTGGGAACGACTTT
1 CATATTCGGTTTAGCACTAGAGTGTATACCCAAGACACTTAGTGCAG-GTGGTGGGCACGACCTT
744941 ATGTGT
65 ATGTGT
744947 CATATTCGGTTTAGCACT
1 CATATTCGGTTTAGCACT
744965 TCGGTGCGTA
Statistics
Matches: 134, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
69 35 0.26
70 99 0.74
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (70 bp):
CATATTCGGTTTAGCACTAGAGTGTATACCCAAGACACTTAGTGCAGGTGGTGGGCACGACCTTA
TGTGT
Found at i:750429 original size:35 final size:35
Alignment explanation
Indices: 750360--750429 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
750350 TTAACAAAAC
*
750360 AAATTAACATTACAACTTAGGATGTCTTAGTGATA
1 AAATTAACATTACAACTTAGGATGTCTTACTGATA
*
750395 AAATTAACATTACAACTTAGGATGTCTTTCTGATA
1 AAATTAACATTACAACTTAGGATGTCTTACTGATA
750430 TTGAAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (35 bp):
AAATTAACATTACAACTTAGGATGTCTTACTGATA
Found at i:750728 original size:46 final size:44
Alignment explanation
Indices: 750663--750789 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 44
750653 TATAAAATCT
*
750663 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
1 CTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
750708 CTTACCATTTAAATT-CATAAGCTCGTAAGCTTATTTTTCCAATATA
1 CTTACCA-TT--ATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* * *
750754 CTTGCCATTATTCCGTAAGCTCATAAGCTTATTTTA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTA
750790 ATGGTTACCA
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
43 3 0.04
44 20 0.28
45 12 0.17
46 35 0.49
47 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (44 bp):
CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
Found at i:755092 original size:3 final size:3
Alignment explanation
Indices: 755084--755119 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
755074 TATTGCTTGA
755084 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
755120 TTTCCTTCTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:758030 original size:44 final size:46
Alignment explanation
Indices: 757912--758035 Score: 159
Period size: 47 Copynumber: 2.8 Consensus size: 46
757902 AATAAAATCT
*
757912 CTTACCATTT-A-TCC-CAAGCTCGTAAGCTTATTTTTCCAAAATA
1 CTTACCATTTAATTCCATAAGCTCGTAAGCTTATTTTTCCAAAATA
*
757955 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTTCCAATATA
1 CTTACCATTT-AATTCCATAAGCTCGTAAGCTTATTTTTCCAAAATA
* * *
758002 CTTGCCA-TT-ATTCCGTAAGCTCATAAGCTTATTT
1 CTTACCATTTAATTCCATAAGCTCGTAAGCTTATTT
758036 GCATGGTTAT
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
43 10 0.14
44 23 0.32
45 1 0.01
46 5 0.07
47 33 0.46
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (46 bp):
CTTACCATTTAATTCCATAAGCTCGTAAGCTTATTTTTCCAAAATA
Found at i:759567 original size:17 final size:18
Alignment explanation
Indices: 759545--759580 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
759535 ACTCTTTCAA
759545 CCCAT-AAACACAAGAAT
1 CCCATAAAACACAAGAAT
759562 CCCATAAAAACACAAGAAT
1 CCCAT-AAAACACAAGAAT
759581 AAAAATCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
19 12 0.71
ACGTcount: A:0.56, C:0.28, G:0.06, T:0.11
Consensus pattern (18 bp):
CCCATAAAACACAAGAAT
Found at i:762560 original size:197 final size:196
Alignment explanation
Indices: 762238--762924 Score: 788
Period size: 197 Copynumber: 3.5 Consensus size: 196
762228 AACCGGATGA
* * * * *
762238 AATTTGACAAAACTGGTAAAGAGCTATCGAAATTGTTGAAATTTGTTTCGATATGTTTATAGGTA
1 AATTTGAAAAAACCGGTAAAGAGCTATCGAAATTGTTGAAATTTGTATCGATACGTTTATAAGTA
* * * * *
762303 TATGTACCAAAGTATTGGTA-TTGTAGGAATTTAAAAGAATTGAAATAGTAGTGGCTATAAAGTA
66 TATGTACCAAAGTATCGGTACTT-TAGGAATTTAAAAGAATTGCAATAATAATGCCTATAAAGTA
762367 TTC-ATACCTTACACACATGTATCGATACATGACAATATAACAGGTTGAAATTTGACAAACCAGG
130 -TCAATACCTTACACACATGTATCGATACATGACAATATAACAGGTTGAAATTTGACAAACCA-G
762431 TTTC
193 TTTC
* * * * *
762435 ATTTTAAAAAAACCGGTAAAGATCTACCGGAATTGTTGAAATTTGTATCGATACGTTTATAAGTA
1 AATTTGAAAAAACCGGTAAAGAGCTATCGAAATTGTTGAAATTTGTATCGATACGTTTATAAGTA
* ** * *
762500 TATGCACCAAAGTATCATTACTTTATGAATTTAAAATAATTGCAATAATAATGCCTATAAAGTAT
66 TATGTACCAAAGTATCGGTACTTTAGGAATTTAAAAGAATTGCAATAATAATGCCTATAAAGTAT
* * * *
762565 CGATACCTTACACACATGTATCGATACATGATAATATAACAGGTTTG-AATTTGACAAAACATAT
131 CAATACCTTACACACATGTATCGATACATGACAATATAACAGG-TTGAAATTTGACAAACCA-GT
762629 TTC
194 TTC
* ** * * *
762632 AATTTGATAAAACTAGTAAAGAGCTAACGAAAATGGTTGAAATTTGTATCGATACTTTTATAAGT
1 AATTTGAAAAAACCGGTAAAGAGCTATCG-AAATTGTTGAAATTTGTATCGATACGTTTATAAGT
*
762697 ATATGTA-CAAAATATCGGTACTTTAGGAATTT-AAAGAATTGCAATAAT-A-GCATCTAT-AAG
65 ATATGTACCAAAGTATCGGTACTTTAGGAATTTAAAAGAATTGCAATAATAATGC--CTATAAAG
* * * **
762757 TATCAATACCCT--AGACATGTATCAATACATGACAATATAACATATTGAAATTTGACAAAACCA
128 TATCAATACCTTACACACATGTATCGATACATGACAATATAACAGGTTGAAATTTGAC-AAACCA
762820 GTTTC
192 GTTTC
* * * * * * * * *
762825 ACTTTGACATAACCGATAAAGTGCTATCGGAATTATTG-AA-CT-TATCGATACATTTATAAGTA
1 AATTTGAAAAAACCGGTAAAGAGCTATCGAAATTGTTGAAATTTGTATCGATACGTTTATAAGTA
*
762887 TATGTACCATAGTATCGGTACTTTAGGAATTTAAAAGA
66 TATGTACCAAAGTATCGGTACTTTAGGAATTTAAAAGA
762925 TATAAAAAAT
Statistics
Matches: 416, Mismatches: 64, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
189 25 0.06
190 24 0.06
191 7 0.02
192 9 0.02
193 60 0.14
194 7 0.02
195 14 0.03
196 21 0.05
197 206 0.50
198 43 0.10
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (196 bp):
AATTTGAAAAAACCGGTAAAGAGCTATCGAAATTGTTGAAATTTGTATCGATACGTTTATAAGTA
TATGTACCAAAGTATCGGTACTTTAGGAATTTAAAAGAATTGCAATAATAATGCCTATAAAGTAT
CAATACCTTACACACATGTATCGATACATGACAATATAACAGGTTGAAATTTGACAAACCAGTTT
C
Found at i:768419 original size:92 final size:92
Alignment explanation
Indices: 768259--768441 Score: 287
Period size: 92 Copynumber: 2.0 Consensus size: 92
768249 CTTTTCTGGA
* * * *
768259 AGAGTTCTCTTTTTGTATAAAGCTTGTCTATTTTGTTAGAAATGGGAGGTGCAGATGTACAGGTT
1 AGAGTTCTCTTTTTGTATAAAGCTAGTCTATTGTGGTAGAAATGGGAGGTGCAGATGTACAGGGT
*
768324 TAAAACAT-TGGTTAAGTTCATTTTATG
66 TAAAACATCT-GTTAAGTTCAGTTTATG
* *
768351 AGAGTTCTCTTTTTGTATAAAGCTAGTTTATTGTGGTAGAAATGGGAGTTGCAGATGTACAGGGT
1 AGAGTTCTCTTTTTGTATAAAGCTAGTCTATTGTGGTAGAAATGGGAGGTGCAGATGTACAGGGT
768416 TAAAACATCTGTTAAGTTCAGTTTAT
66 TAAAACATCTGTTAAGTTCAGTTTAT
768442 AAAATGTTTA
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
92 82 0.99
93 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (92 bp):
AGAGTTCTCTTTTTGTATAAAGCTAGTCTATTGTGGTAGAAATGGGAGGTGCAGATGTACAGGGT
TAAAACATCTGTTAAGTTCAGTTTATG
Found at i:770182 original size:15 final size:14
Alignment explanation
Indices: 770152--770191 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
770142 CTGGAAAACA
770152 TTTTCTAGAAAATGT
1 TTTTC-AGAAAATGT
770167 TTTTCAGAAAACTGT
1 TTTTCAGAAAA-TGT
*
770182 TTTCCAGAAA
1 TTTTCAGAAA
770192 TGTAATTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (14 bp):
TTTTCAGAAAATGT
Found at i:770607 original size:20 final size:21
Alignment explanation
Indices: 770561--770607 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
770551 AAAATGTCTA
*
770561 AGTATCGATACTTCTTATGCC
1 AGTATGGATACTTCTTATGCC
*
770582 -GATATGGATACTT-TTATTCC
1 AG-TATGGATACTTCTTATGCC
770602 AGTATG
1 AGTATG
770608 ATTCTCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (21 bp):
AGTATGGATACTTCTTATGCC
Found at i:770607 original size:145 final size:146
Alignment explanation
Indices: 770289--770675 Score: 519
Period size: 145 Copynumber: 2.7 Consensus size: 146
770279 TTTGTTGTGT
* * * *
770289 CGATATCGATACTTTTATTCCAGTGTGTTTGTCAAACAATTTGCATGCCAAATGTATCGATACAC
1 CGATATGGATACTTTTATTCCAGTATGATTGTCAAACAATTTGCACGCCAAATGTATCGATACAC
* *
770354 ATTATTAAAGTATTGATACTTATAATTTTGAAAAAAATGTATGCAAAGTATGAAAATGTCCATGT
66 ATTATTAAAGTATCGATACTTATAATTTTG-AAAAAATGTATGCAAAGTATGAAAATGTCCAAGT
770419 ATCGATACTTATTATGC
130 ATCGATACTTATTATGC
* * * ** * * *
770436 CGGTACGTATACTTTTATTCTTGTATGCTTGTCAAACAATTTGCAGGCCAAATGTATTGATACAC
1 CGATATGGATACTTTTATTCCAGTATGATTGTCAAACAATTTGCACGCCAAATGTATCGATACAC
* * * *
770501 ATTATTATAGTATCGATATTTATAATTTTG-AAACATGTATGCAAAGTATGAAAATGTCTAAGTA
66 ATTATTAAAGTATCGATACTTATAATTTTGAAAAAATGTATGCAAAGTATGAAAATGTCCAAGTA
*
770565 TCGATACTTCTTATGC
131 TCGATACTTATTATGC
* * * *
770581 CGATATGGATACTTTTATTCCAGTATGATTCTCAAACAATTTTCACGCAAAATGTATCGTTACAC
1 CGATATGGATACTTTTATTCCAGTATGATTGTCAAACAATTTGCACGCCAAATGTATCGATACAC
770646 A-TATATAAAGTATCGATACTTGA-AATTTTG
66 ATTAT-TAAAGTATCGATACTT-ATAATTTTG
770676 GAACCTATTA
Statistics
Matches: 207, Mismatches: 31, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
144 3 0.01
145 121 0.58
146 1 0.00
147 82 0.40
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (146 bp):
CGATATGGATACTTTTATTCCAGTATGATTGTCAAACAATTTGCACGCCAAATGTATCGATACAC
ATTATTAAAGTATCGATACTTATAATTTTGAAAAAATGTATGCAAAGTATGAAAATGTCCAAGTA
TCGATACTTATTATGC
Found at i:770980 original size:197 final size:195
Alignment explanation
Indices: 770560--771357 Score: 888
Period size: 199 Copynumber: 4.1 Consensus size: 195
770550 GAAAATGTCT
*** * * *
770560 AAGTATCGATACTTCTTATGCCGATATGGATACTTTTATTCCAGTATGATTCTCAAACAATTTTC
1 AAGTATCGATACTT-TTATATAGGTATGGATACTTTTATTCCAGTATGCTTCTCAAACAATTTGC
* * * *
770625 ACGCAAAATGTATCGTTACACATATATAAAGTATCGATACTTGAAATTTTGGAACCTATTACCTT
65 ACGCAAAATGTATCG--ATACATATATAAAGTATAGATACTTGAAATTTT-GAAACTATTACATT
* * *
770690 AAAGTAATAGGTAAATTAACAATGTAAACAGTAAAAGTCTA-CGCATAATGATAATAGGCGAAAA
127 AAAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACCGTATAATGATAATAGGCGTAAA
*
770754 TACT
192 TACC
* * *
770758 AAGTATC-ACACTCTTTATATAGGTATGGATACTTTTATTCCAATATGTTTCTCAAACAATTTGC
1 AAGTATCGATACT-TTTATATAGGTATGGATACTTTTATTCCAGTATGCTTCTCAAACAATTTGC
* * * * *
770822 ACACAAAATATATCGATACATGTATAAAGTATAGATACTTGGAATTTCGAAATCTATTACATTGA
65 ACGCAAAATGTATCGATACATATATAAAGTATAGATACTTGAAATTTTGAAA-CTATTACATT-A
*
770887 AA-TAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACCAGTATAATGACAATAGGCGTAAA
128 AAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACC-GTATAATGATAATAGGCGTAAA
770951 TACC
192 TACC
* * *
770955 AAGTATCGATACTTTCATGTAGGTATCGATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCA
1 AAGTATCGATACTTTTATATAGGTATGGATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCA
* * * **
771020 TGCAAAATGTATCGATACACATATATAAAGTATTGATACATGAAATTTTGAAACTTATTATTTTA
66 CGCAAAATGTATCGAT--ACATATATAAAGTATAGATACTTGAAATTTTGAAAC-TATTACATTA
* * *
771085 AAGTAATATGTAAATTAACAATGTAAAAGGTAAAAGTCTACCGGTATGATGATAATAGGCGTAAA
128 AAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACC-GTATAATGATAATAGGCGTAAA
771150 TACC
192 TACC
*
771154 AAGTATCGATACTTTTATATAGGTATGGATACTTTTGTTCCAGTATGCTTCTCAAACAATTTTTG
1 AAGTATCGATACTTTTATATAGGTATGGATACTTTTATTCCAGTATGCTTCTCAAACAA--TTTG
* * * *
771219 CA--CAAAATG--T--AT-C-------------A-ATACTTGGAATTTCGAAACCTAATACTTTA
64 CACGCAAAATGTATCGATACATATATAAAGTATAGATACTTGAAATTTTGAAA-CTATTACATTA
* * * *
771263 AAGTAATAGGTAAATTAACAATGTAAACGGGAAAAGTCTACCGATATATTTATAATAGGTGTAAA
128 AAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACCG-TATAATGATAATAGGCGTAAA
771328 TACC
192 TACC
*
771332 AAGTACCGATACTTTTATATAGGTAT
1 AAGTATCGATACTTTTATATAGGTAT
771358 TCGATATTTT
Statistics
Matches: 525, Mismatches: 61, Indels: 48
0.83 0.10 0.08
Matches are distributed among these distances:
177 1 0.00
178 108 0.21
179 1 0.00
192 1 0.00
194 3 0.01
195 75 0.14
196 4 0.01
197 150 0.29
198 16 0.03
199 160 0.30
201 6 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (195 bp):
AAGTATCGATACTTTTATATAGGTATGGATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCA
CGCAAAATGTATCGATACATATATAAAGTATAGATACTTGAAATTTTGAAACTATTACATTAAAG
TAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACCGTATAATGATAATAGGCGTAAATACC
Found at i:771894 original size:18 final size:18
Alignment explanation
Indices: 771871--771913 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
771861 CGAGACGCAG
*
771871 TTCTTCTCAGCCAAGGTC
1 TTCTTCTCAACCAAGGTC
771889 TTCTTCTCAACCAAGGTC
1 TTCTTCTCAACCAAGGTC
771907 TTCTTCT
1 TTCTTCT
771914 TAAGTAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.33, G:0.12, T:0.40
Consensus pattern (18 bp):
TTCTTCTCAACCAAGGTC
Found at i:773102 original size:118 final size:118
Alignment explanation
Indices: 772894--773124 Score: 372
Period size: 118 Copynumber: 2.0 Consensus size: 118
772884 ACCAAATCAA
* * * *
772894 GGATTTATAAGGCCCCATCAGCTTTAAACATGCGCTACCTATTACATTAAATAAGCGCTACTTGT
1 GGATTTATAAGGCCCCATCAGCTTTAAAAAGGCACTACCTATTACATTAAATAAGCGCTACCTGT
* *
772959 TATGTTATTATGATTGATAATGTTTCCAGTAATTAACCTATTTTGTTATCGTT
66 TATGTTATTATGATTGATAATGTTTCCAGTAATTAACCGATTATGTTATCGTT
* *
773012 GGATTTATAAGGCCCCATCAGCTTTAAAAAGGTACTACCTATTACGTTAAATAAGCGCTACCTGT
1 GGATTTATAAGGCCCCATCAGCTTTAAAAAGGCACTACCTATTACATTAAATAAGCGCTACCTGT
* *
773077 TATGTTTTTATGGTTGATAATGTTTCCAGTAATTAACCGATTATGTTA
66 TATGTTATTATGATTGATAATGTTTCCAGTAATTAACCGATTATGTTA
773125 AAGTCAAAAA
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
118 103 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (118 bp):
GGATTTATAAGGCCCCATCAGCTTTAAAAAGGCACTACCTATTACATTAAATAAGCGCTACCTGT
TATGTTATTATGATTGATAATGTTTCCAGTAATTAACCGATTATGTTATCGTT
Found at i:773473 original size:2 final size:2
Alignment explanation
Indices: 773466--773505 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
773456 GTGTTTATCT
773466 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
773506 ACTACTTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:774825 original size:2 final size:2
Alignment explanation
Indices: 774818--774872 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
774808 TAAGTTAAAC
774818 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
774860 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
774873 GTCATTTTCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:785361 original size:23 final size:23
Alignment explanation
Indices: 785329--785373 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
785319 GACATATGTG
* *
785329 TTATATGTGGTCATTTGGGACAT
1 TTATACGTGGTCATTCGGGACAT
*
785352 TTATACGTGGTCCTTCGGGACA
1 TTATACGTGGTCATTCGGGACA
785374 AATTCTATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.38
Consensus pattern (23 bp):
TTATACGTGGTCATTCGGGACAT
Found at i:792460 original size:19 final size:19
Alignment explanation
Indices: 792438--792483 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
792428 GTTTTTTTTT
792438 TATTTTTAGTA-ATTTTGAA
1 TATTTTTAGTAGATTTT-AA
* *
792457 TATTTGTAATAGATTTTAA
1 TATTTTTAGTAGATTTTAA
792476 -ATTTTTAG
1 TATTTTTAG
792484 CTTTTGGATA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
18 6 0.27
19 11 0.50
20 5 0.23
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.57
Consensus pattern (19 bp):
TATTTTTAGTAGATTTTAA
Found at i:795041 original size:66 final size:66
Alignment explanation
Indices: 794935--795071 Score: 229
Period size: 66 Copynumber: 2.1 Consensus size: 66
794925 CCATGAGCGA
** *
794935 CACCTTTTATGCCAATAATGCATTGTTATGCATTAAACAAAATTGATCAAAAATTTTCATTAGTG
1 CACCTTTTATGCCAATAATGCACAGTTATGCATTAAACAAAATCGATCAAAAATTTTCATTAGTG
795000 G
66 G
* *
795001 CACCTTTTATGTCGATAATGCACAGTTATGCATTAAACAAAATCGATCAAAAATTTTCATTAGTG
1 CACCTTTTATGCCAATAATGCACAGTTATGCATTAAACAAAATCGATCAAAAATTTTCATTAGTG
795066 G
66 G
795067 CACCT
1 CACCT
795072 GTTGAGTTAA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (66 bp):
CACCTTTTATGCCAATAATGCACAGTTATGCATTAAACAAAATCGATCAAAAATTTTCATTAGTG
G
Found at i:796091 original size:21 final size:20
Alignment explanation
Indices: 796040--796092 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
796030 CACTTTAAGG
796040 AGTATTGATACTCGGGGTCC
1 AGTATTGATACTCGGGGTCC
**
796060 AGTATCAATACTCAGAGGGT-C
1 AGTATTGATACTC-G-GGGTCC
796081 AGTATTGATACT
1 AGTATTGATACT
796093 GAGACATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 11 0.41
21 12 0.44
22 4 0.15
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (20 bp):
AGTATTGATACTCGGGGTCC
Found at i:800378 original size:22 final size:21
Alignment explanation
Indices: 800344--800409 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 21
800334 TATTTTTATT
*
800344 AAAAAAAA-GAGAAATATGCAA
1 AAAAAAAATTAGAAA-ATGCAA
* *
800365 AAAAAAAATTAGAAAAAAGCCA
1 AAAAAAAATTAG-AAAATGCAA
800387 AAAAAAAATTCAGAAAATGCAA
1 AAAAAAAATT-AGAAAATGCAA
800409 A
1 A
800410 CAAATGAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
21 8 0.22
22 24 0.65
23 5 0.14
ACGTcount: A:0.71, C:0.08, G:0.11, T:0.11
Consensus pattern (21 bp):
AAAAAAAATTAGAAAATGCAA
Found at i:805649 original size:20 final size:20
Alignment explanation
Indices: 805619--805663 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
805609 ATTTTTTTTG
805619 AATTT-TTTTTAAAAAATAA
1 AATTTATTTTTAAAAAATAA
*
805638 AATTTATTTTTAAAATATAA
1 AATTTATTTTTAAAAAATAA
*
805658 ATTTTA
1 AATTTA
805664 AAAATTCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATTTATTTTTAAAAAATAA
Found at i:806018 original size:11 final size:11
Alignment explanation
Indices: 805993--806027 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
805983 TATTATTGAT
*
805993 AAAAATATGTA
1 AAAAATATTTA
806004 AAAATATATTTA
1 AAAA-ATATTTA
806016 AAAAATATTTA
1 AAAAATATTTA
806027 A
1 A
806028 TTAAATTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (11 bp):
AAAAATATTTA
Found at i:806870 original size:26 final size:26
Alignment explanation
Indices: 806839--806900 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
806829 TAATGGAATA
806839 TAAAGATGAAGTAAATATTTTTTCTT
1 TAAAGATGAAGTAAATATTTTTTCTT
806865 TAAAGATGAAGTAAATATTTTTTCTT
1 TAAAGATGAAGTAAATATTTTTTCTT
806891 TAAAGATGAA
1 TAAAGATGAA
806901 AAGAATTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (26 bp):
TAAAGATGAAGTAAATATTTTTTCTT
Found at i:808536 original size:17 final size:17
Alignment explanation
Indices: 808503--808537 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
808493 TTAGTTTAGT
*
808503 AACTAGTTTGATAAATG
1 AACTAGTTTAATAAATG
*
808520 AACTAGTTTAATTAATG
1 AACTAGTTTAATAAATG
808537 A
1 A
808538 TTTTATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (17 bp):
AACTAGTTTAATAAATG
Found at i:810152 original size:21 final size:21
Alignment explanation
Indices: 810128--810167 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
810118 TTCATTTTCA
810128 CTCTCAAT-TCTATTTTCAATG
1 CTCTCAATGTCT-TTTTCAATG
810149 CTCTCAATGTCTTTTTCAA
1 CTCTCAATGTCTTTTTCAA
810168 CTCTCGTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.23, C:0.25, G:0.05, T:0.47
Consensus pattern (21 bp):
CTCTCAATGTCTTTTTCAATG
Found at i:816318 original size:23 final size:23
Alignment explanation
Indices: 816290--816382 Score: 123
Period size: 23 Copynumber: 4.0 Consensus size: 23
816280 AAGTGCACAT
816290 ATTTGTCCCGAAGGACCACATAG
1 ATTTGTCCCGAAGGACCACATAG
*
816313 ATTTGTCCCAAAGGACCACATAG
1 ATTTGTCCCGAAGGACCACATAG
* *
816336 GTTTGTTCCGAAGGACCACATAG
1 ATTTGTCCCGAAGGACCACATAG
* ** *
816359 GTTCATCCCGAAGGACCATATAG
1 ATTTGTCCCGAAGGACCACATAG
816382 A
1 A
816383 ACCCTCAACT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (23 bp):
ATTTGTCCCGAAGGACCACATAG
Found at i:816424 original size:2 final size:2
Alignment explanation
Indices: 816417--816489 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
816407 TATACCTCTA
816417 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
816459 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
816490 CCTTGGGCTT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:816592 original size:15 final size:16
Alignment explanation
Indices: 816560--816594 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
816550 ATAGAGTACA
816560 TTCACATATAGGTCACT
1 TTCACATATA-GTCACT
816577 TTCACATATA-TCACT
1 TTCACATATAGTCACT
816592 TTC
1 TTC
816595 GTTTAGCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.44
17 10 0.56
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.40
Consensus pattern (16 bp):
TTCACATATAGTCACT
Found at i:817107 original size:20 final size:20
Alignment explanation
Indices: 817082--817132 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
817072 TTTTGATTAC
* *
817082 GGTATCGATACCTTCCTCTT
1 GGTATCGATACCTACATCTT
*
817102 GGTATCGATTCCTACATCTT
1 GGTATCGATACCTACATCTT
*
817122 AGTATCGATAC
1 GGTATCGATAC
817133 TTCTTCAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (20 bp):
GGTATCGATACCTACATCTT
Found at i:821985 original size:24 final size:24
Alignment explanation
Indices: 821918--821968 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
821908 TATGCGGTAT
*
821918 TTCGAG-ATAATTCTACGTGGTCC
1 TTCGAGAAAAATTCTACGTGGTCC
*
821941 TTTGAGAAAAATTCTACGTGGTCC
1 TTCGAGAAAAATTCTACGTGGTCC
821965 TTCG
1 TTCG
821969 GGTCAAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (24 bp):
TTCGAGAAAAATTCTACGTGGTCC
Found at i:822735 original size:24 final size:22
Alignment explanation
Indices: 822681--822736 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
822671 GATTTTTTTA
*
822681 TGAATAGTGATGAACAGTACCG
1 TGAATAGTGATGAACAATACCG
*
822703 TGAACAGTGATGAACAATACCCCG
1 TGAATAGTGATGAACAATA--CCG
822727 TGAATAGTGA
1 TGAATAGTGA
822737 ACAGTGCATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 17 0.59
24 12 0.41
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (22 bp):
TGAATAGTGATGAACAATACCG
Found at i:829355 original size:30 final size:30
Alignment explanation
Indices: 829319--829399 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
829309 CAAAATACAT
*
829319 AACTTTTGAAAATTATACTTTTGGTCCCTA
1 AACTTTTAAAAATTATACTTTTGGTCCCTA
* *
829349 AACTTTTAAAAATTA-AATTTTGGTCTCTA
1 AACTTTTAAAAATTATACTTTTGGTCCCTA
**
829378 AACTTTTCAAACTTTATACTTT
1 AACTTTT-AAAAATTATACTTT
829400 AGCCAATAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
29 19 0.44
30 20 0.47
31 4 0.09
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.46
Consensus pattern (30 bp):
AACTTTTAAAAATTATACTTTTGGTCCCTA
Found at i:829370 original size:29 final size:30
Alignment explanation
Indices: 829319--829384 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 30
829309 CAAAATACAT
* *
829319 AACTTTTGAAAATTATACTTTTGGTCCCTA
1 AACTTTTAAAAATTATAATTTTGGTCCCTA
*
829349 AACTTTTAAAAATTA-AATTTTGGTCTCTA
1 AACTTTTAAAAATTATAATTTTGGTCCCTA
829378 AACTTTT
1 AACTTTT
829385 CAAACTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 19 0.58
30 14 0.42
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (30 bp):
AACTTTTAAAAATTATAATTTTGGTCCCTA
Found at i:832711 original size:26 final size:25
Alignment explanation
Indices: 832657--832704 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
832647 TAATGTATAT
*
832657 AAAATATATATAATATATAGTTTTG
1 AAAATATATATAATATACAGTTTTG
*
832682 AAAA-ATATATGATATACAGTTTT
1 AAAATATATATAATATACAGTTTT
832705 TAGAAAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (25 bp):
AAAATATATATAATATACAGTTTTG
Found at i:835703 original size:40 final size:42
Alignment explanation
Indices: 835654--835736 Score: 107
Period size: 46 Copynumber: 1.9 Consensus size: 42
835644 TACCCAATTC
835654 AACCCGAACTC-AT-ATCTAAATGTTGAGTCAAATAAAATAA
1 AACCCGAACTCAATAATCTAAATGTTGAGTCAAATAAAATAA
*
835694 AACCTGAACTCATATGAAGATCTAAATGTTGAGTCAAATAAAA
1 AACCCGAACTCA-AT--A-ATCTAAATGTTGAGTCAAATAAAA
835737 AATTGGACTA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
40 10 0.28
42 2 0.06
46 24 0.67
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.25
Consensus pattern (42 bp):
AACCCGAACTCAATAATCTAAATGTTGAGTCAAATAAAATAA
Found at i:848209 original size:22 final size:22
Alignment explanation
Indices: 848181--848242 Score: 97
Period size: 22 Copynumber: 2.8 Consensus size: 22
848171 AGTCTAGGGT
*
848181 TTCATAGGTCCTTTGGGGCATA
1 TTCATAGGTCCTTTGGGACATA
*
848203 TTCATAGGTCCTTCGGGACATA
1 TTCATAGGTCCTTTGGGACATA
*
848225 TTCATAGGTCATTTGGGA
1 TTCATAGGTCCTTTGGGA
848243 TAAAGTTCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (22 bp):
TTCATAGGTCCTTTGGGACATA
Found at i:849962 original size:18 final size:17
Alignment explanation
Indices: 849908--849956 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
849898 TTGGACCCTT
* *
849908 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
849926 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
849944 AGTGCATTCGATG
1 AGTGCA-TCGATG
849957 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:849996 original size:19 final size:19
Alignment explanation
Indices: 849972--850024 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
849962 AAATAGCCAG
849972 AGTGCATCGATGCATTGCT
1 AGTGCATCGATGCATTGCT
849991 AGTGCATCGATGCATTGCT
1 AGTGCATCGATGCATTGCT
*
850010 GGTGCATCGATGCAT
1 AGTGCATCGATGCAT
850025 CAAATGCATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (19 bp):
AGTGCATCGATGCATTGCT
Found at i:850086 original size:84 final size:83
Alignment explanation
Indices: 849928--850089 Score: 238
Period size: 84 Copynumber: 1.9 Consensus size: 83
849918 TGCACTAAGA
* *
849928 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATTGCTAG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATTGCTAG
849993 TGCATCGATGCATTGCTG
66 TGCATCGATGCATTGCTG
* * *
850011 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGATGCA-TGGT
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCACAGTGCATCGATGCATTGCT
850074 ATGTGCATCGATGCAT
64 A-GTGCATCGATGCAT
850090 GAAATGCATT
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
83 32 0.45
84 36 0.51
85 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (83 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATTGCTAG
TGCATCGATGCATTGCTG
Found at i:850103 original size:83 final size:83
Alignment explanation
Indices: 849929--850104 Score: 216
Period size: 83 Copynumber: 2.1 Consensus size: 83
849919 GCACTAAGAG
* *
849929 TGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATTGCTAGT
1 TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATTGCTAGT
***
849994 GCATCGATGCATTGCTGG
66 GCATCGATGCATTGCAAA
* * *
850012 TGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGATGCA-TGGTA
1 TGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCACAGTGCATCGATGCATTGCTA
850075 TGTGCATCGATGCA-TG-AAA
64 -GTGCATCGATGCATTGCAAA
850094 TGCATTCGATG
1 TGCA-TCGATG
850105 TTCAATTTAA
Statistics
Matches: 81, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
82 4 0.05
83 39 0.48
84 35 0.43
85 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (83 bp):
TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATTGCTAGT
GCATCGATGCATTGCAAA
Found at i:850145 original size:65 final size:63
Alignment explanation
Indices: 849991--850156 Score: 194
Period size: 65 Copynumber: 2.6 Consensus size: 63
849981 ATGCATTGCT
* *
849991 AGTGCATCGATGCATTGCTGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTC
1 AGTGCATCGATGCATGGTTGGTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAT-CTC
* **
850056 AGTGCATCGATGCATGGTAT-GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TC
1 AGTGCATCGATGCATGGT-TGGTGCATCGATGCATCAAATGCATTCGATGTTTC-ATAAAATCTC
*
850118 ATGGTGCATCGATGCATGGATTGGTGCATCGGTGCATCA
1 A--GTGCATCGATGCATGG-TTGGTGCATCGATGCATCA
850157 CTCTGAAAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
62 3 0.03
63 3 0.03
64 22 0.25
65 59 0.67
66 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (63 bp):
AGTGCATCGATGCATGGTTGGTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCTC
Found at i:852352 original size:24 final size:23
Alignment explanation
Indices: 852323--852367 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
852313 TCTTACTAAT
*
852323 TTTCGAAATCATAATTTTTTTTAA
1 TTTCG-AATCAAAATTTTTTTTAA
*
852347 TTTCGAATTAAAATTTTTTTT
1 TTTCGAATCAAAATTTTTTTT
852368 TTGAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (23 bp):
TTTCGAATCAAAATTTTTTTTAA
Found at i:852378 original size:17 final size:19
Alignment explanation
Indices: 852356--852390 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
852346 ATTTCGAATT
852356 AAAATT-TTT-TTTTTGAA
1 AAAATTGTTTGTTTTTGAA
852373 AAAATTGTTTGTTTTTGA
1 AAAATTGTTTGTTTTTGA
852391 TGAAATTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.57
Consensus pattern (19 bp):
AAAATTGTTTGTTTTTGAA
Found at i:865902 original size:23 final size:24
Alignment explanation
Indices: 865876--865929 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
865866 AATCGTTAAT
* *
865876 TAATTTAATTT-TTAATAGAATTA
1 TAATTTAATTTATTAAAAGAATAA
*
865899 TAA-TTAATTTATTAAAATAATAA
1 TAATTTAATTTATTAAAAGAATAA
865922 TAATTTAA
1 TAATTTAA
865930 GTAATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 7 0.27
23 15 0.58
24 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
TAATTTAATTTATTAAAAGAATAA
Found at i:876746 original size:13 final size:13
Alignment explanation
Indices: 876728--876761 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
876718 CATCTTGTTG
876728 TAGTATTCATTGA
1 TAGTATTCATTGA
876741 TAGTATTCATTGA
1 TAGTATTCATTGA
*
876754 TAGCATTC
1 TAGTATTC
876762 TAGTTTATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (13 bp):
TAGTATTCATTGA
Found at i:879307 original size:5 final size:5
Alignment explanation
Indices: 879289--879334 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
879279 ATTTTTCCCA
*
879289 TTTT- TTTTC CTTTC TTTTC -TTTC TTTTC TTTTCCC TTTTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT--C TTTTC TTTTC T
879335 CTTACTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
4 8 0.22
5 23 0.64
7 5 0.14
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTC
Found at i:886678 original size:73 final size:71
Alignment explanation
Indices: 886526--886705 Score: 317
Period size: 73 Copynumber: 2.5 Consensus size: 71
886516 ATTTTAAATA
886526 TTTATTTTATCTTTGTTTTAGGTATTTTAGTTT-AATAGGTTTAGTATTTTAATTAAGTTTTAGG
1 TTTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTAGTATTTTAATTAAGTTTTAGG
886590 ATATTT
66 ATATTT
*
886596 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTTGTATTTTAATTAAGTTTTA
1 TT-TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGG-TTTAGTATTTTAATTAAGTTTTA
886661 GGATATTAT
64 GGATATT-T
886670 TTTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAA
1 TTTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAA
886706 CAGTGTTAAC
Statistics
Matches: 105, Mismatches: 1, Indels: 5
0.95 0.01 0.05
Matches are distributed among these distances:
70 2 0.02
71 31 0.30
72 6 0.06
73 63 0.60
74 3 0.03
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.61
Consensus pattern (71 bp):
TTTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTAGTATTTTAATTAAGTTTTAGG
ATATTT
Found at i:886722 original size:73 final size:70
Alignment explanation
Indices: 886526--886726 Score: 287
Period size: 73 Copynumber: 2.8 Consensus size: 70
886516 ATTTTAAATA
* *
886526 TTTATTTTATCTTTGTTTTAGGTATTTTAGTTT-AATAGGTTTAGTATTTTAATTAAGTTTTAGG
1 TTTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGG-TTACTGTTTTAATTAAGTTTTAGG
886590 ATATTT
65 ATATTT
**
886596 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTTGTATTTTAATTAAGTTTTA
1 TT-TATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTACTG--TTTTAATTAAGTTTTA
886661 GGATATTAT
63 GGATATT-T
*
886670 TTTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAACAGTGTTAACTGTTTTAATTA
1 TTTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAG-GTT-ACTGTTTTAATTA
886727 GGATTTAAGA
Statistics
Matches: 118, Mismatches: 6, Indels: 11
0.87 0.04 0.08
Matches are distributed among these distances:
70 2 0.02
71 34 0.29
72 6 0.05
73 68 0.58
74 6 0.05
75 2 0.02
ACGTcount: A:0.25, C:0.02, G:0.13, T:0.59
Consensus pattern (70 bp):
TTTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTACTGTTTTAATTAAGTTTTAGGA
TATTT
Found at i:887360 original size:27 final size:26
Alignment explanation
Indices: 887326--887376 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
887316 TATTTACTAC
*
887326 TATTATTAATTATTATT-TCCCTTTTAT
1 TATTATT-ATT-TTATTATACCTTTTAT
887353 TATTATTATTTTATTATACCTTTT
1 TATTATTATTTTATTATACCTTTT
887377 CAACTTTACC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 10 0.45
27 7 0.32
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (26 bp):
TATTATTATTTTATTATACCTTTTAT
Found at i:888129 original size:14 final size:14
Alignment explanation
Indices: 888110--888138 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
888100 TCTTGACATG
888110 TTCTTTCCAGGGGC
1 TTCTTTCCAGGGGC
888124 TTCTTTCCAGGGGC
1 TTCTTTCCAGGGGC
888138 T
1 T
888139 AAAGCAGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.28, G:0.28, T:0.38
Consensus pattern (14 bp):
TTCTTTCCAGGGGC
Found at i:893222 original size:5 final size:5
Alignment explanation
Indices: 893212--893261 Score: 91
Period size: 5 Copynumber: 9.8 Consensus size: 5
893202 ACCCATTTCT
893212 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTT
893262 TTAGCAAACT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 39 0.89
6 5 0.11
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:893246 original size:16 final size:16
Alignment explanation
Indices: 893211--893262 Score: 97
Period size: 16 Copynumber: 3.3 Consensus size: 16
893201 AACCCATTTC
893211 TTTTTATTTTATTTTA
1 TTTTTATTTTATTTTA
893227 -TTTTATTTTATTTTA
1 TTTTTATTTTATTTTA
893242 TTTTTATTTTATTTTA
1 TTTTTATTTTATTTTA
893258 TTTTT
1 TTTTT
893263 TAGCAAACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.43
16 20 0.57
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTATTTTATTTTA
Found at i:895264 original size:47 final size:47
Alignment explanation
Indices: 895213--895308 Score: 151
Period size: 47 Copynumber: 2.0 Consensus size: 47
895203 AAAGTTTTAG
895213 TATTTTA-ATAGAGTTTTAGGATATTATTTTTATA-TTTATCTTTGTTT
1 TATTTTAGATA-AGTTTTAGGATA-TATTTTTATATTTTATCTTTGTTT
*
895260 TATTTTAGTTAAGTTTTAGGATATATTTTTATATTTTATCTTTGTTT
1 TATTTTAGATAAGTTTTAGGATATATTTTTATATTTTATCTTTGTTT
895307 TA
1 TA
895309 GGTATTTTAG
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
46 10 0.22
47 34 0.74
48 2 0.04
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.62
Consensus pattern (47 bp):
TATTTTAGATAAGTTTTAGGATATATTTTTATATTTTATCTTTGTTT
Found at i:895321 original size:46 final size:47
Alignment explanation
Indices: 895224--895321 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 47
895214 ATTTTAATAG
**
895224 AGTTTTAGGATATTATTTTTATATTTATCTTTGTTTTATTTTAGTTA
1 AGTTTTAGGATATTATTTTTATATTTATCTTTGTTTTATGGTAGTTA
* *
895271 AGTTTTAGGATA-TATTTTTATATTTTATCTTTGTTTTA-GGTATTTT
1 AGTTTTAGGATATTATTTTTATA-TTTATCTTTGTTTTATGGTAGTTA
895317 AGTTT
1 AGTTT
895322 AAATAGTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
46 19 0.41
47 27 0.59
ACGTcount: A:0.22, C:0.02, G:0.12, T:0.63
Consensus pattern (47 bp):
AGTTTTAGGATATTATTTTTATATTTATCTTTGTTTTATGGTAGTTA
Found at i:895958 original size:17 final size:18
Alignment explanation
Indices: 895936--895977 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
895926 CTTTAGATTG
895936 TTTATTTAATTATTAT-T
1 TTTATTTAATTATTATCT
*
895953 TTTATTTAATTCTTATCT
1 TTTATTTAATTATTATCT
895971 TTTATTT
1 TTTATTT
895978 TAAAAAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:895996 original size:11 final size:12
Alignment explanation
Indices: 895975--895999 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
895965 TTATCTTTTA
895975 TTTTAAAAAAAC
1 TTTTAAAAAAAC
895987 TTTTAAAAAAAC
1 TTTTAAAAAAAC
895999 T
1 T
896000 CCTTTTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (12 bp):
TTTTAAAAAAAC
Found at i:898757 original size:2 final size:2
Alignment explanation
Indices: 898750--898815 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
898740 TTCTCTAACC
898750 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
898792 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
898816 TTTCTCTCTG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:901771 original size:35 final size:36
Alignment explanation
Indices: 901729--901830 Score: 111
Period size: 35 Copynumber: 2.8 Consensus size: 36
901719 AATTTGTGGA
901729 AAAATGTCTCAAGCGAGATCGAA-TTTGTTTTTAGAG
1 AAAATGTCTCAAGCGAGATC-AACTTTGTTTTTAGAG
* * *
901765 -AAATGTCTCAAGCGAGA-CAAAGTTTATTTTTTGAG
1 AAAATGTCTCAAGCGAGATC-AACTTTGTTTTTAGAG
* *
901800 AAAACGATCTCAAGTGAGATCAACTTTGTTT
1 AAAATG-TCTCAAGCGAGATCAACTTTGTTT
901831 ACTGTGAAAC
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
34 3 0.05
35 28 0.51
36 4 0.07
37 19 0.35
38 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (36 bp):
AAAATGTCTCAAGCGAGATCAACTTTGTTTTTAGAG
Found at i:901927 original size:36 final size:37
Alignment explanation
Indices: 901881--901971 Score: 120
Period size: 35 Copynumber: 2.6 Consensus size: 37
901871 TATCTCAAGC
*
901881 GAGACGAAATTTGTTTTTCAAG-AAATTGTCTGAAA-T
1 GAGACAAAATTTGTTTTTCAAGAAAATTGTCT-AAAGT
901917 GAGACAAAATTTGTTTTT--AGAAAATTGTCTAAAGT
1 GAGACAAAATTTGTTTTTCAAGAAAATTGTCTAAAGT
*
901952 GATACAAAA-TTGTTTTTCAA
1 GAGACAAAATTTGTTTTTCAA
901972 AAGAAGTTGT
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
34 13 0.27
35 18 0.37
36 18 0.37
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.37
Consensus pattern (37 bp):
GAGACAAAATTTGTTTTTCAAGAAAATTGTCTAAAGT
Found at i:902304 original size:4 final size:4
Alignment explanation
Indices: 902295--904665 Score: 4098
Period size: 4 Copynumber: 609.8 Consensus size: 4
902285 TAAATGTTTG
902295 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902343 ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT ATGT ATGT ATG- -TGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902387 ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902434 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902482 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902530 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGGT ATGT ATGT A-GT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT-GT ATGT ATGT ATGT ATGT
902578 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902624 ATGT ATGT ATGT A-GT AT-T ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902670 ATGT ATGT A-GT ATGT ATGT ATGT ATG- -TGT ATGT ATGT ATGT ATTGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-TGT
902716 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG- -TGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902762 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902810 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT -TGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
902856 ATGT ATGT ATG- -TGT ATGT ATGT ATGG ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902902 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT-GT ATGT
902951 ATGT A-GT -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
902997 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903044 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903091 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903139 ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
903186 ATGT ATGT ATGT ATG- GTGT ATGT ATGT ATGT ATGT ATGT ATGT ATG-
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903232 -TGT ATGT A-GT ATGT -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903277 ATGT ATGT ATGT ATGT ATGT ATG- ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903324 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903372 ATGT ATGT ATGT A--T ATGT ATGT ATGT ATGT ATGT A--T ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903416 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
903464 ATGGT ATGT ATGT A-GT ATGT A--T ATGT ATGT ATGT ATTT ATGT ATGT
1 AT-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903510 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903558 ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903605 ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903652 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
903699 AGGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903747 ATGT ATGT ATGT ATGT ATGT AT-T ATGT ATGT ATGT A--T ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
903792 ATGT ATG- ATGT ATGT ATGT ATGAT GTGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATG-T ATGT ATGT ATGT ATGT ATGT ATGT
903840 ATGT AT-T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903887 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903935 ATGT ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
903981 ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904028 ATGT ATGT ATGT ATGT ATGT ATG- -TGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904074 ATGT ATGT ATGT ATG- -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904120 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904168 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904216 ATGT ATGT ATGT ATGT ATGT ATGT -TGT ATGT A-GT ATG- ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904261 ATGT ATGT AT-T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG- -TGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904306 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904352 ATGT ATGT ATGT ATG- -TGT ATGT A-GT ATGT ATGT ATGGT ATGT ATG-
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT-GT ATGT ATGT
*
904397 ATGT AT-T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGG ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904444 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904492 AT-T -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
904538 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
904586 ATGT ATGT ATGT ATGT ATGT A-GT CTGT ATGT A--T ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
904631 ATGT A--T ATGT ATGT ATGT AT-T ATGT GTG- ATGT ATG
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG
904666 CTTTTCTCGA
Statistics
Matches: 2271, Mismatches: 16, Indels: 160
0.93 0.01 0.07
Matches are distributed among these distances:
2 39 0.02
3 97 0.04
4 2112 0.93
5 23 0.01
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:907682 original size:13 final size:13
Alignment explanation
Indices: 907664--907688 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
907654 ATCGCTTAAA
907664 ACACTTATAGCAT
1 ACACTTATAGCAT
907677 ACACTTATAGCA
1 ACACTTATAGCA
907689 ATAATGCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (13 bp):
ACACTTATAGCAT
Found at i:908628 original size:7 final size:7
Alignment explanation
Indices: 908598--908655 Score: 64
Period size: 7 Copynumber: 8.1 Consensus size: 7
908588 CTTAATACTA
908598 ATATTAT
1 ATATTAT
*
908605 ATAATAT
1 ATATTAT
*
908612 AGT-TTTT
1 A-TATTAT
908619 ATATTAT
1 ATATTAT
908626 ATATTTAT
1 ATA-TTAT
908634 ATATTAT
1 ATATTAT
908641 ATATTAT
1 ATATTAT
*
908648 ATTTTAT
1 ATATTAT
908655 A
1 A
908656 AGTATAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
6 1 0.02
7 34 0.79
8 8 0.19
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (7 bp):
ATATTAT
Found at i:908979 original size:22 final size:22
Alignment explanation
Indices: 908951--908997 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
908941 ACGTTACCAA
* *
908951 CCATTAACTTCTTCTTCTTCTT
1 CCATTAACTTCTTATCCTTCTT
908973 CCATTAACTTCTTATCCTTCTT
1 CCATTAACTTCTTATCCTTCTT
908995 CCA
1 CCA
908998 ATACGCGCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.49
Consensus pattern (22 bp):
CCATTAACTTCTTATCCTTCTT
Found at i:910830 original size:15 final size:15
Alignment explanation
Indices: 910810--910841 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
910800 TTTTTTTCAC
*
910810 TTTCGGTGCCACTAA
1 TTTCGGTGCCACCAA
910825 TTTCGGTGCCACCAA
1 TTTCGGTGCCACCAA
910840 TT
1 TT
910842 GTTGAATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (15 bp):
TTTCGGTGCCACCAA
Found at i:914727 original size:16 final size:16
Alignment explanation
Indices: 914706--914761 Score: 94
Period size: 16 Copynumber: 3.5 Consensus size: 16
914696 TTTCATTGTC
*
914706 ATAGCTTCTATTACGA
1 ATAGCTCCTATTACGA
914722 ATAGCTCCTATTACGA
1 ATAGCTCCTATTACGA
*
914738 ATGGCTCCTATTACGA
1 ATAGCTCCTATTACGA
914754 ATAGCTCC
1 ATAGCTCC
914762 CACTTTCACT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (16 bp):
ATAGCTCCTATTACGA
Found at i:915365 original size:15 final size:15
Alignment explanation
Indices: 915345--915376 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
915335 TTTTTTCAAC
*
915345 TTTCGGTGCCACTAA
1 TTTCGGTGCCACCAA
915360 TTTCGGTGCCACCAA
1 TTTCGGTGCCACCAA
915375 TT
1 TT
915377 GTTGAATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (15 bp):
TTTCGGTGCCACCAA
Found at i:917594 original size:261 final size:261
Alignment explanation
Indices: 917130--917660 Score: 1039
Period size: 261 Copynumber: 2.0 Consensus size: 261
917120 CCTTTACGAC
917130 ATGCACCCATAACAAAACCTTTGTTTCGAATTACAACACTTGACCATGATCTTTGTTGTCCTTGC
1 ATGCACCCATAACAAAACCTTTGTTTCGAATTACAACACTTGACCATGATCTTTGTTGTCCTTGC
917195 AAAAAATTTAAATCAAAGTTAACCTTCGTTGCTTGAGATAGGAGAGGCTTCCAAAAGACCACCGA
66 AAAAAATTTAAATCAAAGTTAACCTTCGTTGCTTGAGATAGGAGAGGCTTCCAAAAGACCACCGA
917260 CAGAAAAAGAGGTCCACGAAGGTTGGTATTGGCCGAGTGAAAATCTAAATACTGTACTCTAACCA
131 CAGAAAAAGAGGTCCACGAAGGTTGGTATTGGCCGAGTGAAAATCTAAATACTGTACTCTAACCA
917325 AGGTAATTATCTCTTCAAGCCTCACAATTTGTCCCTCATGAAGAAGTCGGTTGCTTGCATACCGT
196 AGGTAATTATCTCTTCAAGCCTCACAATTTGTCCCTCATGAAGAAGTCGGTTGCTTGCATACCGT
917390 A
261 A
917391 ATGCACCCATAACAAAACCTTTGTTTCGAATTACAACACTTGACCATGATCTTTGTTGTCCTTGC
1 ATGCACCCATAACAAAACCTTTGTTTCGAATTACAACACTTGACCATGATCTTTGTTGTCCTTGC
917456 AAAAAATTTAAATCAAAGTTAACCTTCGTTGCTTGAGATAGGAGAGGCTTCCAAAAGACCACCGA
66 AAAAAATTTAAATCAAAGTTAACCTTCGTTGCTTGAGATAGGAGAGGCTTCCAAAAGACCACCGA
*
917521 CAGCAAAAGAGGTCCACGAAGGTTGGTATTGGCCGAGTGAAAATCTAAATACTGTACTCTAACCA
131 CAGAAAAAGAGGTCCACGAAGGTTGGTATTGGCCGAGTGAAAATCTAAATACTGTACTCTAACCA
917586 AGGTAATTATCTCTTCAAGCCTCACAATTTGTCCCTCATGAAGAAGTCGGTTGCTTGCATACCGT
196 AGGTAATTATCTCTTCAAGCCTCACAATTTGTCCCTCATGAAGAAGTCGGTTGCTTGCATACCGT
917651 A
261 A
917652 AT--ACCCATA
1 ATGCACCCATA
917661 GAATTACTAT
Statistics
Matches: 269, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
259 7 0.03
261 262 0.97
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (261 bp):
ATGCACCCATAACAAAACCTTTGTTTCGAATTACAACACTTGACCATGATCTTTGTTGTCCTTGC
AAAAAATTTAAATCAAAGTTAACCTTCGTTGCTTGAGATAGGAGAGGCTTCCAAAAGACCACCGA
CAGAAAAAGAGGTCCACGAAGGTTGGTATTGGCCGAGTGAAAATCTAAATACTGTACTCTAACCA
AGGTAATTATCTCTTCAAGCCTCACAATTTGTCCCTCATGAAGAAGTCGGTTGCTTGCATACCGT
A
Found at i:917869 original size:121 final size:121
Alignment explanation
Indices: 917655--917894 Score: 462
Period size: 121 Copynumber: 2.0 Consensus size: 121
917645 TACCGTAATA
917655 CCCATAGAATTACTATTATCTCTGTATGCTTTGTATCTGTATAATTCTAAAACATCCATTTCATC
1 CCCATAGAATTACTATTATCTCTGTATGCTTTGTATCTGTATAATTCTAAAACATCCATTTCATC
917720 TATTCGAATAACGACACATCTACCACATGTTGAGGCCAATGGTAACCCATGGAATG
66 TATTCGAATAACGACACATCTACCACATGTTGAGGCCAATGGTAACCCATGGAATG
*
917776 CCCATAGAATTACTATTATCTCTTTATGCTTTGTATCTGTATAATTCTAAAACATCCATTTCATC
1 CCCATAGAATTACTATTATCTCTGTATGCTTTGTATCTGTATAATTCTAAAACATCCATTTCATC
*
917841 TATTCGAATAACGACACATCTACCACATGTTGAGGCCAATGTTAACCCATGGAA
66 TATTCGAATAACGACACATCTACCACATGTTGAGGCCAATGGTAACCCATGGAA
917895 AGCCATACTA
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 117 1.00
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.34
Consensus pattern (121 bp):
CCCATAGAATTACTATTATCTCTGTATGCTTTGTATCTGTATAATTCTAAAACATCCATTTCATC
TATTCGAATAACGACACATCTACCACATGTTGAGGCCAATGGTAACCCATGGAATG
Found at i:918736 original size:34 final size:36
Alignment explanation
Indices: 918662--918745 Score: 127
Period size: 34 Copynumber: 2.4 Consensus size: 36
918652 CATTTTTCAA
*
918662 CAAACTTTGAAAAACTATTTTTCAAAGAAACATTTAC
1 CAAACTTTG-AAAACCATTTTTCAAAGAAACATTTAC
*
918699 CAAACTTTGAAAACCA-TTTTCAAA-AAATATTTAC
1 CAAACTTTGAAAACCATTTTTCAAAGAAACATTTAC
918733 CAAACTTTGAAAA
1 CAAACTTTGAAAA
918746 TATGATTTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
34 22 0.49
35 8 0.18
36 6 0.13
37 9 0.20
ACGTcount: A:0.48, C:0.17, G:0.05, T:0.31
Consensus pattern (36 bp):
CAAACTTTGAAAACCATTTTTCAAAGAAACATTTAC
Found at i:923282 original size:35 final size:36
Alignment explanation
Indices: 923234--923349 Score: 146
Period size: 35 Copynumber: 3.2 Consensus size: 36
923224 TCCCATTACA
* * * *
923234 TTTTTCAACAAACATCTACCAAAC-TTGAAAATTAT
1 TTTTTAAAGAAACATTTACCAAACTTTGAAAATCAT
*
923269 TTTTTAAAGAAACATTTACCAAACTTTGAAAACCA-
1 TTTTTAAAGAAACATTTACCAAACTTTGAAAATCAT
* *
923304 TTTTCAAAAAAACATTTACCAAACTTTGAAAATCAT
1 TTTTTAAAGAAACATTTACCAAACTTTGAAAATCAT
923340 TTTTTCAAAG
1 TTTTT-AAAG
923350 TTGGTTGTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
35 53 0.78
36 12 0.18
37 3 0.04
ACGTcount: A:0.44, C:0.17, G:0.04, T:0.34
Consensus pattern (36 bp):
TTTTTAAAGAAACATTTACCAAACTTTGAAAATCAT
Found at i:923305 original size:21 final size:20
Alignment explanation
Indices: 923278--923341 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
923268 TTTTTTAAAG
923278 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
*
923298 AAACCATTT-TCAAA-----A
1 AAA-CATTTACCAAACTTTGA
923313 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
923333 AAATCATTT
1 AAA-CATTT
923342 TTTCAAAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
14 5 0.15
15 8 0.24
20 11 0.32
21 10 0.29
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (20 bp):
AAACATTTACCAAACTTTGA
Found at i:929561 original size:21 final size:21
Alignment explanation
Indices: 929537--929576 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
929527 AAGACTTTAT
*
929537 TTTCAAAATACAAAAATGATG
1 TTTCAAAATAAAAAAATGATG
929558 TTTCAAAATAAAAAAATGA
1 TTTCAAAATAAAAAAATGA
929577 AAATAGTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.28
Consensus pattern (21 bp):
TTTCAAAATAAAAAAATGATG
Found at i:942279 original size:32 final size:32
Alignment explanation
Indices: 942243--942357 Score: 117
Period size: 32 Copynumber: 3.6 Consensus size: 32
942233 ATTGACACTC
*
942243 TTGTGCATTATTTGAATGCAAACCTGACCATA
1 TTGTGCATTATCTGAATGCAAACCTGACCATA
** * *
942275 TTGTGCATTATCT-AATTAAAAACATGAGCATA
1 TTGTGCATTATCTGAA-TGCAAACCTGACCATA
* * *
942307 TTATGCATTATCTGAATGC-ACCCTAACCATA
1 TTGTGCATTATCTGAATGCAAACCTGACCATA
* *
942338 ATGTGCATTATCTAAATGCA
1 TTGTGCATTATCTGAATGCA
942358 CCCTGACTAG
Statistics
Matches: 65, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
31 26 0.40
32 37 0.57
33 2 0.03
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (32 bp):
TTGTGCATTATCTGAATGCAAACCTGACCATA
Found at i:961655 original size:21 final size:21
Alignment explanation
Indices: 961629--961682 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
961619 CCAAACCTCA
* *
961629 AGTATTTATAGTCTTTGAGGG-
1 AGTATTGATACTCTTTG-GGGT
961650 AGTATTGATACTCTTTGGGGT
1 AGTATTGATACTCTTTGGGGT
961671 AGTATTGATACT
1 AGTATTGATACT
961683 AGCCTTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 3 0.10
21 27 0.90
ACGTcount: A:0.24, C:0.07, G:0.26, T:0.43
Consensus pattern (21 bp):
AGTATTGATACTCTTTGGGGT
Found at i:963702 original size:3 final size:3
Alignment explanation
Indices: 963694--963735 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
963684 CTTATTGTAC
*
963694 TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
963736 AATATATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:963744 original size:2 final size:2
Alignment explanation
Indices: 963733--963774 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
963723 TTATTATTAT
963733 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
963774 T
1 T
963775 TATTTATGAC
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:966977 original size:25 final size:25
Alignment explanation
Indices: 966946--966996 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
966936 GGTACCCCTT
966946 GGGGGGAATCGGTACCCCCTTGGGG
1 GGGGGGAATCGGTACCCCCTTGGGG
*
966971 GGGGGGAATCGGTACCCTCTTGGGG
1 GGGGGGAATCGGTACCCCCTTGGGG
966996 G
1 G
966997 AGGAATCGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.22, G:0.49, T:0.18
Consensus pattern (25 bp):
GGGGGGAATCGGTACCCCCTTGGGG
Found at i:966995 original size:23 final size:23
Alignment explanation
Indices: 966926--967013 Score: 92
Period size: 25 Copynumber: 3.9 Consensus size: 23
966916 AAACCATTTA
*
966926 GGGGAGAATCGGTACCC-CTT--
1 GGGGGGAATCGGTACCCTCTTGG
*
966946 GGGGGGAATCGGTACCCCCTTGGGG
1 GGGGGGAATCGGTACCCTCTT--GG
966971 GGGGGGAATCGGTACCCTCTTGG
1 GGGGGGAATCGGTACCCTCTTGG
* * *
966994 GGGAGGAATCGATTCCCTCT
1 GGGGGGAATCGGTACCCTCT
967014 GAACATTCTA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
20 16 0.28
21 3 0.05
23 19 0.33
25 20 0.34
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (23 bp):
GGGGGGAATCGGTACCCTCTTGG
Found at i:969598 original size:23 final size:22
Alignment explanation
Indices: 969538--969587 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
969528 CCAGAACCCC
969538 AGGGGGAATCGGTTCCCCTTCA
1 AGGGGGAATCGGTTCCCCTTCA
* *
969560 AAGGGGAATCGGTTCCTCTTCA
1 AGGGGGAATCGGTTCCCCTTCA
969582 AGGGGG
1 AGGGGG
969588 GTATCGATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.20, C:0.22, G:0.36, T:0.22
Consensus pattern (22 bp):
AGGGGGAATCGGTTCCCCTTCA
Found at i:978626 original size:18 final size:18
Alignment explanation
Indices: 978559--978633 Score: 55
Period size: 18 Copynumber: 4.1 Consensus size: 18
978549 TTGATAACAT
*
978559 AGAGAGAAAAAA-AGAAA
1 AGAGAGAAAAAAGAAAAA
* * *
978576 AGATATGAAAAGCATAAAAA
1 AGAGA-GAAAA-AAGAAAAA
*
978596 AGAGA-ATATAAAGAAAAA
1 AGAGAGA-AAAAAGAAAAA
978614 AGAGAGAAAAAAGGAAAAA
1 AGAGAGAAAAAA-GAAAAA
978633 A
1 A
978634 AATACTTTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
17 4 0.09
18 21 0.48
19 11 0.25
20 8 0.18
ACGTcount: A:0.72, C:0.01, G:0.20, T:0.07
Consensus pattern (18 bp):
AGAGAGAAAAAAGAAAAA
Found at i:980712 original size:59 final size:58
Alignment explanation
Indices: 980639--980855 Score: 199
Period size: 59 Copynumber: 3.8 Consensus size: 58
980629 TATCCAATTG
* *
980639 AAATGAATTTTAAAGAAATTAAATCTAATTTTCAGAGGTTTCTTAACATGGTGTTTTC
1 AAATGAATTTTAAAGAAACTAAATCTAATTTTCAGAGGTTTCTTAACATGATGTTTTC
* ** * * *
980697 AAATTAATTTTTAAAGAAACTAGGTCTGATTTTCAGAGGTTTCTTGATATGATGTTTTC
1 AAATGAA-TTTTAAAGAAACTAAATCTAATTTTCAGAGGTTTCTTAACATGATGTTTTC
* * ** * * *
980756 AAATGAATTTTAAAGAAGCTAAGTC-CGTTTTCAGAAGTTTCTT--GATGAT-TTCTCC
1 AAATGAATTTTAAAGAAACTAAATCTAATTTTCAGAGGTTTCTTAACATGATGTT-TTC
* * * * *
980811 ACATGAGTTTTTAAAGAAGCTAAGTCTAATTTTTAGAGGTTTCTT
1 AAATGA-ATTTTAAAGAAACTAAATCTAATTTTCAGAGGTTTCTT
980856 GACGATTACT
Statistics
Matches: 133, Mismatches: 22, Indels: 9
0.81 0.13 0.05
Matches are distributed among these distances:
54 2 0.02
55 12 0.09
56 18 0.14
57 29 0.22
58 22 0.17
59 50 0.38
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.41
Consensus pattern (58 bp):
AAATGAATTTTAAAGAAACTAAATCTAATTTTCAGAGGTTTCTTAACATGATGTTTTC
Found at i:981683 original size:237 final size:240
Alignment explanation
Indices: 981175--981733 Score: 772
Period size: 237 Copynumber: 2.3 Consensus size: 240
981165 ACTTAATAAG
* * * * *
981175 TCCTTTGGGTCATC-AGTAACCTTT-GAGCAAGATGATAAGTCCTTCGGGCCATACATAAGACCT
1 TCCTTCGGGTCATCTATTAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATTCATAAGACCT
* * * *
981238 TTGGGCATGATGTTTTCACATTATTTTCAAAAAATGAAAATGTAATTTCCAAAGCTTCTCATTTA
66 TCGGGCAGGATGTTTTCACATGATTTTCAAAAAATGAAAATGCAATTTCCAAAGCTTCTCATTTA
* *
981303 AATCTTTTCTGAAATTTGATTTTTTTTTAAAAGTAAGAAAAATATTTCCAAATTTTCTTACTTAG
131 AATCTTTTCTGAAAATTGATTTTTTTTT-AAAGTAAGAAAAAGATTTCCAAATTTTCTTACTTAG
* * * *
981368 TAAGTCCTTTGGGTCATTAGTAAGCCTTTCGAACATGATGCCTAAA
195 TAACTCCTTTGAGTCATCACTAAGCCTTTCGAACATGATGCCTAAA
* *
981414 TCCTTCGGGTCATCTATTAGCCTTTCGAGCAAGATGATAAGTCCTTCCGGCCATTCATAATACCT
1 TCCTTCGGGTCATCTATTAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATTCATAAGACCT
* *
981479 TCGGGCAGGATGTTTTCACGTGATTTTCGAAAAATGAGAAA-GCAATTTCCAAAGCTTCTCATTT
66 TCGGGCAGGATGTTTTCACATGATTTTCAAAAAATGA-AAATGCAATTTCCAAAGCTTCTCATTT
* *
981543 AAAT-TTTTTTGAAAATTGATTTTTTTTT-AAGTAAGAAAACGATTT-CAAATTTTCTTACTTAG
130 AAATCTTTTCTGAAAATTGATTTTTTTTTAAAGTAAGAAAAAGATTTCCAAATTTTCTTACTTAG
* *
981605 TAACTCCTTTGAGTCATCACTAAGTCTTTCGAGCATGATGCCTAAA
195 TAACTCCTTTGAGTCATCACTAAGCCTTTCGAACATGATGCCTAAA
** * * **
981651 TTGTTGGGGTCATCTA-TAGGCCTTTCGAGCAAGATGATAAGTCCTTCAGTCCATTTGTAAGACC
1 TCCTTCGGGTCATCTATTA-GCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATTCATAAGACC
*
981715 TTCGAGCAGGATGTTTTCA
65 TTCGGGCAGGATGTTTTCA
981734 TATGGTGTTA
Statistics
Matches: 285, Mismatches: 31, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
236 2 0.01
237 128 0.45
238 15 0.05
239 13 0.05
240 30 0.11
241 94 0.33
242 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (240 bp):
TCCTTCGGGTCATCTATTAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATTCATAAGACCT
TCGGGCAGGATGTTTTCACATGATTTTCAAAAAATGAAAATGCAATTTCCAAAGCTTCTCATTTA
AATCTTTTCTGAAAATTGATTTTTTTTTAAAGTAAGAAAAAGATTTCCAAATTTTCTTACTTAGT
AACTCCTTTGAGTCATCACTAAGCCTTTCGAACATGATGCCTAAA
Found at i:983002 original size:234 final size:238
Alignment explanation
Indices: 982385--983190 Score: 1077
Period size: 234 Copynumber: 3.4 Consensus size: 238
982375 AAACTAGTCC
* *
982385 ACATTTCAAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGAAGAGGGAGAAGAAGTTCATAAT
1 ACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGATGAGGGAGAAGAAGTTCATAAT
* * * *
982450 GAGACGAACTTGTTCAACCTTTGTTCGAATCCATCACAGAAGGAGGTGGATCAACATTTTCAATG
66 GAGAAGAACTTGTTCAACCTTTGTTCGAATCCATAACA-AAAGAGGTGGATCAACATTTCCAATG
* * *
982515 AAGAAGTCCATAATGAGAAGAACTTGTTCAAACACTTTGCTCATCCATCACATATGGAGTTGGAT
130 AAGAAGTTCATAATGAGAAGAACTTGTTCAAATACTTTGCTCATCCATCATATATGGAGTTGGAT
* *
982580 AAGTATCATCACTTTGTTTGATTTCATCACAGAATGAGGTGGATCA
195 CAG--TCATCACTTTGTTTGATTCCATCACAGAATGAGGTGGATCA
** *
982626 ACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCCAATTAGGGAGAAGAAGTTCATAAT
1 ACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGATGAGGGAGAAGAAGTTCATAAT
* * *
982691 GTA-AAGAACTTGTTCAACCTTTGTTCGAATCTATTACAAAATGA-GCGGATCAACATTTCCAAT
66 G-AGAAGAACTTGTTCAACCTTTGTTCGAATCCATAACAAAA-GAGGTGGATCAACATTTCCAAT
* *
982754 GAAGAAGTTCATAATGAGAAGAACTTGTTCAAATACTTTGCTCATCCATCGTATA-GGGGTTGGA
129 GAAGAAGTTCATAATGAGAAGAACTTGTTCAAATACTTTGCTCATCCATCATATATGGAGTTGGA
* *
982818 TCAG-CATCACTTTGTTTGATTCCATTACAGAAGGAGGTGGATCA
194 TCAGTCATCACTTTGTTTGATTCCATCACAGAATGAGGTGGATCA
* * * *
982862 CCATTTCCAATGGGAGAGTTCATAATGAG-AGAACTCGTATGATGAGGGAGAA-AAATCCATAAT
1 ACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGATGAGGGAGAAGAAGTTCATAAT
* * * * *
982925 GATAATAACTTGTTCAACCTTTGTTCAAATCCATAACAAAAGAGGTGGATCAATATTTCCAATAA
66 GAGAAGAACTTGTTCAACCTTTGTTCGAATCCATAACAAAAGAGGTGGATCAACATTTCCAATGA
* * * * *
982990 AGAAGTTCATAATGAGAAGAACTCGTTAAAATACTTGGCTTATCCATCATATATGAAGTTGGATC
131 AGAAGTTCATAATGAGAAGAACTTGTTCAAATACTTTGCTCATCCATCATATATGGAGTTGGATC
** * *
983055 AGCATCATCACTTTGTTCAATTCCATCACCGAATGAGATGGATCA
196 AG--TCATCACTTTGTTTGATTCCATCACAGAATGAGGTGGATCA
* * * * * *
983100 ACATTTCTAGT-GGAGAGTTCATAATGAGAAGAACTCATCTGATAAGGGAGAATAACTTCATAAT
1 ACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGATGAGGGAGAAGAAGTTCATAAT
* *
983164 GAGAATAACTTGTTCAACCTTAGTTCG
66 GAGAAGAACTTGTTCAACCTTTGTTCG
983191 TTTCCATCAC
Statistics
Matches: 497, Mismatches: 58, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
233 3 0.01
234 110 0.22
235 30 0.06
236 65 0.13
237 17 0.03
238 62 0.12
239 44 0.09
240 70 0.14
241 95 0.19
242 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (238 bp):
ACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCGTCTGATGAGGGAGAAGAAGTTCATAAT
GAGAAGAACTTGTTCAACCTTTGTTCGAATCCATAACAAAAGAGGTGGATCAACATTTCCAATGA
AGAAGTTCATAATGAGAAGAACTTGTTCAAATACTTTGCTCATCCATCATATATGGAGTTGGATC
AGTCATCACTTTGTTTGATTCCATCACAGAATGAGGTGGATCA
Found at i:983368 original size:203 final size:202
Alignment explanation
Indices: 983019--983501 Score: 661
Period size: 203 Copynumber: 2.4 Consensus size: 202
983009 AACTCGTTAA
* * *
983019 AATACTTGGCTTATCCATCATATATGAAGTTGGATCAGCATCATCACTTTGTTCAATTCCATCAC
1 AATACTTGGCTTATCCATCACATATGGAGTTGGATCAACATCATCACTTTGTTC-ATTCCATCAC
* * * *
983084 CGAAT-GAGATGGATCAACATTTCTAGTGGAGAGTTCATAATGAGAAGAACTCATCTGATAAGGG
65 AG-ATGGAGATGGATCAACATTTCAAGTGGAGAGCTCATAATGAGAAGAACTCATCCGATAAGGG
* * * *
983148 AGAATAACTTCATAATGAGAATAACTTGTTCAACCTTAGTTCGTTTCCATCACATAAGAAGTTGG
129 AGAAGAACTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTCCATCACATAAGAAGTTGA
983213 AACA-TCACC
194 AACAGT-ACC
*
983222 AATACTTGGCTTATCCATCACATATGGAGTTGGATCAACATCATCACTTTGTTCGATTCCATCAA
1 AATACTTGGCTTATCCATCACATATGGAGTTGGATCAACATCATCACTTTGTTC-ATTCCATCAC
* * *
983287 AGATGGAGGTGGATCAACATTTCAA-TGGGAGAGCTCATAATGAGAATAACTCATCCGATGAGGG
65 AGATGGAGATGGATCAACATTTCAAGT-GGAGAGCTCATAATGAGAAGAACTCATCCGATAAGGG
* *
983351 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTCCATCACATAAGGAGTTGA
129 AGAAGAACTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTCCATCACATAAGAAGTTGA
983416 AACAGTACC
194 AACAGTACC
* * * * *
983425 AA-CCTTGGCTCATCCATCGCATAAGGAGTTGGATCAACATCATCATTTTGTTTCA-TCCATCAC
1 AATACTTGGCTTATCCATCACATATGGAGTTGGATCAACATCATCACTTTG-TTCATTCCATCAC
* *
983488 AGAAGGAGTTGGAT
65 AGATGGAGATGGAT
983502 TAGCATCATC
Statistics
Matches: 250, Mismatches: 26, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
201 19 0.08
202 47 0.19
203 183 0.73
204 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (202 bp):
AATACTTGGCTTATCCATCACATATGGAGTTGGATCAACATCATCACTTTGTTCATTCCATCACA
GATGGAGATGGATCAACATTTCAAGTGGAGAGCTCATAATGAGAAGAACTCATCCGATAAGGGAG
AAGAACTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTCCATCACATAAGAAGTTGAAA
CAGTACC
Found at i:983540 original size:42 final size:43
Alignment explanation
Indices: 983433--983545 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 43
983423 CCAACCTTGG
*
983433 CTCATCCATCGCATAAGGAGTTGGATCAACATCATCATTTTGT
1 CTCATCCATCACATAAGGAGTTGGATCAACATCATCATTTTGT
* * * *
983476 TTCATCCATCACAGAAGGAGTTGGATTAGCATCATCATTTT-T
1 CTCATCCATCACATAAGGAGTTGGATCAACATCATCATTTTGT
* **
983518 CTCGTCCATCACATAAAAAGTTGGATCA
1 CTCATCCATCACATAAGGAGTTGGATCA
983546 GTATTACCTT
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
42 23 0.39
43 36 0.61
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (43 bp):
CTCATCCATCACATAAGGAGTTGGATCAACATCATCATTTTGT
Found at i:985717 original size:31 final size:32
Alignment explanation
Indices: 985648--985717 Score: 99
Period size: 31 Copynumber: 2.2 Consensus size: 32
985638 GTGATCCTTT
* *
985648 GGTAGG-CTTTGCAGTCCCGAGATCTTTCTTG
1 GGTAGGCCTTTGCAGCCCCGAGATCTTTCTTA
*
985679 GGTAGGCCTTT-CAGCCCCGAGATTTTTCTTA
1 GGTAGGCCTTTGCAGCCCCGAGATCTTTCTTA
985710 GGTAGGCC
1 GGTAGGCC
985718 CCGTGGCACC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
31 31 0.89
32 4 0.11
ACGTcount: A:0.14, C:0.24, G:0.29, T:0.33
Consensus pattern (32 bp):
GGTAGGCCTTTGCAGCCCCGAGATCTTTCTTA
Found at i:985746 original size:32 final size:32
Alignment explanation
Indices: 985664--985748 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 32
985654 CTTTGCAGTC
** *
985664 CCGAGATCTTTCTTGGGTAGG-CCTTTCAGCC
1 CCGAGATCTTTCTTGGGTAGGCCCCGTCAGCA
* * *
985695 CCGAGATTTTTCTTAGGTAGGCCCCGT-GGCA
1 CCGAGATCTTTCTTGGGTAGGCCCCGTCAGCA
985726 CCGAGAATCTTTCTTGGGTAGGC
1 CCGAG-ATCTTTCTTGGGTAGGC
985749 TCTCAGGCCC
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
31 26 0.59
32 18 0.41
ACGTcount: A:0.15, C:0.26, G:0.28, T:0.31
Consensus pattern (32 bp):
CCGAGATCTTTCTTGGGTAGGCCCCGTCAGCA
Found at i:988718 original size:13 final size:13
Alignment explanation
Indices: 988700--988725 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
988690 TGGCCCCTAT
988700 GTTGTGACTTTTA
1 GTTGTGACTTTTA
988713 GTTGTGACTTTTA
1 GTTGTGACTTTTA
988726 AACTTTTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (13 bp):
GTTGTGACTTTTA
Found at i:993131 original size:95 final size:95
Alignment explanation
Indices: 992994--993192 Score: 272
Period size: 95 Copynumber: 2.1 Consensus size: 95
992984 TACCGACGAG
* * * * * *
992994 GTAGTATCGATACCATGGTAAGGGTATCGATACTAGTAAACATTGAATATAATTTTGGTATCGAT
1 GTAGTATCGATACAATGGTAAGGGTATCAATACCAGGAAACATCGAAGATAATTTTGGTATCGAT
*
993059 ACCAGAAAGGGGTATTGGTACCATAGTATA
66 ACCAGAAAGGGGTATCGGTACCATAGTATA
* *
993089 GTAGTATCGATACAATGGTAAGGGTATCAATACCAGGCAACATCGAAGCTAATTTTGGTATCGAT
1 GTAGTATCGATACAATGGTAAGGGTATCAATACCAGGAAACATCGAAGATAATTTTGGTATCGAT
*** *
993154 ATTGGAAGGGGGTATCGGTACCATAGTATA
66 ACCAGAAAGGGGTATCGGTACCATAGTATA
*
993184 GAAGTATCG
1 GTAGTATCG
993193 GTACCAGGGT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
95 90 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (95 bp):
GTAGTATCGATACAATGGTAAGGGTATCAATACCAGGAAACATCGAAGATAATTTTGGTATCGAT
ACCAGAAAGGGGTATCGGTACCATAGTATA
Found at i:993211 original size:95 final size:95
Alignment explanation
Indices: 992996--993216 Score: 237
Period size: 95 Copynumber: 2.3 Consensus size: 95
992986 CCGACGAGGT
* * * * * ** * **
992996 AGTATCGATACCATGGTAAGGGTATCGATACTAGTAAACATTGAATATAATTTTGGTATCGATAC
1 AGTATCGATACAAGGGTAAGAGTATCAATACCAGGCAACATCGAAGCTAATTTTGGTATCGATAC
* *
993061 CAGAAAGGGGTATTGGTACCATAGTATAGT
66 CAGAAAGGGGTATCGGTACCATAGTATAGA
* * *
993091 AGTATCGATACAATGGTAAGGGTATCAATACCAGGCAACATCGAAGCTAATTTTGGTATCGATAT
1 AGTATCGATACAAGGGTAAGAGTATCAATACCAGGCAACATCGAAGCTAATTTTGGTATCGATAC
** *
993156 TGGAAGGGGGTATCGGTACCATAGTATAGA
66 CAGAAAGGGGTATCGGTACCATAGTATAGA
* * *
993186 AGTATCGGTACCAGGGT-AGTAGTATCGATAC
1 AGTATCGATACAAGGGTAAG-AGTATCAATAC
993217 TATTGAGCCT
Statistics
Matches: 106, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
94 2 0.02
95 104 0.98
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (95 bp):
AGTATCGATACAAGGGTAAGAGTATCAATACCAGGCAACATCGAAGCTAATTTTGGTATCGATAC
CAGAAAGGGGTATCGGTACCATAGTATAGA
Found at i:993680 original size:47 final size:47
Alignment explanation
Indices: 993607--993774 Score: 291
Period size: 47 Copynumber: 3.6 Consensus size: 47
993597 AAATCGAATT
*
993607 CATAATTGAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * *
993654 CATAATTGAAAATACATGAAAGGATGCATTAAGACATGAAAGGATGA
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
*
993701 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAATGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
993748 CATAATTGAAAATGCATGAAAGGATGC
1 CATAATTGAAAATGCATGAAAGGATGC
993775 CATAATTGAA
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.23
Consensus pattern (47 bp):
CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
Found at i:993765 original size:27 final size:27
Alignment explanation
Indices: 993734--993801 Score: 127
Period size: 27 Copynumber: 2.5 Consensus size: 27
993724 ATGCATTAAG
*
993734 GCATGAAATGATGCCATAATTGAAAAT
1 GCATGAAAGGATGCCATAATTGAAAAT
993761 GCATGAAAGGATGCCATAATTGAAAAT
1 GCATGAAAGGATGCCATAATTGAAAAT
993788 GCATGAAAGGATGC
1 GCATGAAAGGATGC
993802 ATTAAGGCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.43, C:0.12, G:0.24, T:0.22
Consensus pattern (27 bp):
GCATGAAAGGATGCCATAATTGAAAAT
Found at i:993812 original size:47 final size:47
Alignment explanation
Indices: 993761--993887 Score: 209
Period size: 47 Copynumber: 2.7 Consensus size: 47
993751 AATTGAAAAT
993761 GCATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAG
993808 GCATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAG
** *
993855 AAATGAAAGGATGCCATATATATTAAAATGCAT
1 GCATGAAAGGATGCCATA-AT-TGAAAATGCAT
993888 AGATGAATGT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
47 63 0.84
48 2 0.03
49 10 0.13
ACGTcount: A:0.44, C:0.10, G:0.23, T:0.23
Consensus pattern (47 bp):
GCATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAG
Found at i:993812 original size:94 final size:90
Alignment explanation
Indices: 993620--993821 Score: 239
Period size: 94 Copynumber: 2.2 Consensus size: 90
993610 AATTGAAAAT
*
993620 GCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAATTGAAAATACATGAAAGGATGCATTA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAATTGAAAATACATGAAAGGATGCATTA
* *
993685 AGACATGAAAGGATGACATAATTGAAAAT
66 AAACATGAAAGGATGAC--AATT--AAAG
* *
993714 GCATGAAAGGATGCATTAAGGCATGAAATGATGCCATAATTGAAAATGCATGAAAGGATGCCATA
1 GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAATTGAAAATACATGAAAGGATG-C---
993779 ATTGAAAATGCATGAAAGGATG-C-ATT-AAG
62 ATT-AAAA--CATGAAAGGATGACAATTAAAG
993808 GCATGAAAGGATGC
1 GCATGAAAGGATGC
993822 CATAATTGAA
Statistics
Matches: 96, Mismatches: 5, Indels: 14
0.83 0.04 0.12
Matches are distributed among these distances:
94 73 0.76
95 1 0.01
97 3 0.03
98 3 0.03
99 3 0.03
100 1 0.01
101 12 0.12
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.22
Consensus pattern (90 bp):
GCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAATTGAAAATACATGAAAGGATGCATTA
AAACATGAAAGGATGACAATTAAAG
Found at i:993848 original size:74 final size:74
Alignment explanation
Indices: 993688--993848 Score: 304
Period size: 74 Copynumber: 2.2 Consensus size: 74
993678 TGCATTAAGA
* *
993688 CATGAAAGGATGACATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAATGATGCCATAA
1 CATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
993753 TTGAAAATG
66 TTGAAAATG
993762 CATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
1 CATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
993827 TTGAAAATG
66 TTGAAAATG
993836 CATGAAAGGATGC
1 CATGAAAGGATGC
993849 ATTAAGAAAT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
74 85 1.00
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (74 bp):
CATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
TTGAAAATG
Found at i:993854 original size:121 final size:123
Alignment explanation
Indices: 993640--993887 Score: 419
Period size: 121 Copynumber: 2.0 Consensus size: 123
993630 ATGCATTAAG
993640 GCATGAAAGGATGCCATAATTGAAAATACATGAAAGGATGCATTAAGACATGAAAGGATGACATA
1 GCATGAAAGGATGCCATAATTGAAAATACATGAAAGGATGCATTAAGACATGAAAGGATGACATA
** *
993705 ATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAATGATGCCATA-AT-TGAAAAT
66 ATTGAAAATGCATGAAAGGATGCATTAAGAAATGAAAGGATGCCATATATATGAAAAT
* * *
993761 GCATGAAAGGATGCCATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATA
1 GCATGAAAGGATGCCATAATTGAAAATACATGAAAGGATGCATTAAGACATGAAAGGATGACATA
*
993826 ATTGAAAATGCATGAAAGGATGCATTAAGAAATGAAAGGATGCCATATATATTAAAAT
66 ATTGAAAATGCATGAAAGGATGCATTAAGAAATGAAAGGATGCCATATATATGAAAAT
993884 GCAT
1 GCAT
993888 AGATGAATGT
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
121 106 0.90
122 2 0.02
123 10 0.08
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.23
Consensus pattern (123 bp):
GCATGAAAGGATGCCATAATTGAAAATACATGAAAGGATGCATTAAGACATGAAAGGATGACATA
ATTGAAAATGCATGAAAGGATGCATTAAGAAATGAAAGGATGCCATATATATGAAAAT
Found at i:999014 original size:57 final size:60
Alignment explanation
Indices: 998935--999094 Score: 186
Period size: 58 Copynumber: 2.8 Consensus size: 60
998925 TCATATGTCT
* * * *
998935 CTAAACTATAATTCTCTTTCTAAATTAGACTTTAAAC-TTT-AATATTCTAATTTTATCC
1 CTAAACTATAACTCTCTATCTAAATTAGACCTTAAACTTTTGAATATTCCAATTTTATCC
* *
998993 CTAAATTATAACTCTC-ATCTAAATTAGACCTTAAACTTTTGAATATTCCAATTTTATCA
1 CTAAACTATAACTCTCTATCTAAATTAGACCTTAAACTTTTGAATATTCCAATTTTATCC
* * * * *
999052 TTAAACTATTAC-CT-TTTCTAAATTAGTCCCTAAACTTTTGAAT
1 CTAAACTATAACTCTCTATCTAAATTAGACCTTAAACTTTTGAAT
999095 CTTCTAAATT
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
57 18 0.21
58 44 0.51
59 25 0.29
ACGTcount: A:0.35, C:0.18, G:0.03, T:0.44
Consensus pattern (60 bp):
CTAAACTATAACTCTCTATCTAAATTAGACCTTAAACTTTTGAATATTCCAATTTTATCC
Found at i:999609 original size:14 final size:15
Alignment explanation
Indices: 999590--999622 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
999580 AAATAATCAT
*
999590 AAATATT-TTTTGAA
1 AAATATTATTTTAAA
999604 AAATATTATTTTAAA
1 AAATATTATTTTAAA
999619 AAAT
1 AAAT
999623 GAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (15 bp):
AAATATTATTTTAAA
Found at i:1001270 original size:17 final size:16
Alignment explanation
Indices: 1001228--1001274 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
1001218 CGTATTAATT
1001228 TTTTTTAAATAAA-ATA
1 TTTTTTAAA-AAATATA
*
1001244 TTATTT-AAAAATATA
1 TTTTTTAAAAAATATA
1001259 TATTTTTAAAAAATAT
1 T-TTTTTAAAAAATAT
1001275 GGACGTGACG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 3 0.12
15 6 0.23
16 9 0.35
17 8 0.31
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTTTTAAAAAATATA
Found at i:1001458 original size:25 final size:25
Alignment explanation
Indices: 1001430--1001480 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
1001420 GAAGCCAATG
1001430 ATAAA-TTATAAACTTTAATTATTAA
1 ATAAAGTTA-AAACTTTAATTATTAA
*
1001455 ATAAAGTTAAAACTTTAATTCTTAA
1 ATAAAGTTAAAACTTTAATTATTAA
1001480 A
1 A
1001481 CCTTAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (25 bp):
ATAAAGTTAAAACTTTAATTATTAA
Done.