genome.fa.s8510.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008510.1 Hibiscus syriacus cultivar Beakdansim tig00111365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178315

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1422--1449	14	2.0	14	100	0	56	21	42	0	35	1.53
1626--1668	15	2.9	15	100	0	86	11	27	0	60	1.31
10086--10135	14	3.9	13	73	21	52	78	2	18	2	0.95
16131--16173	23	1.9	21	81	13	50	32	18	11	37	1.87
18631--18673	23	1.9	21	81	13	50	32	18	11	37	1.87
21130--21172	23	1.9	21	81	13	50	32	18	11	37	1.87
23101--23126	11	2.4	11	100	0	52	73	7	19	0	1.07
23150--23211	19	3.3	18	80	13	63	74	6	17	1	1.11
27797--27876	35	2.2	37	86	4	110	31	37	3	27	1.74
30988--31039	21	2.6	21	90	6	81	34	13	5	46	1.67
31777--31820	8	5.2	8	82	17	54	75	0	25	0	0.81
31777--31820	18	2.6	16	80	19	54	75	0	25	0	0.81
31777--31811	13	2.7	13	83	16	54	77	0	22	0	0.78
34255--34314	30	2.0	31	83	3	77	26	8	10	55	1.61
35223--35270	20	2.5	20	86	10	64	35	10	6	47	1.63
35992--36050	8	7.0	8	73	22	50	74	1	22	1	1.00
35991--36050	25	2.4	25	81	15	70	75	1	21	1	0.99
39266--39317	21	2.6	21	90	6	81	34	13	5	46	1.67
39400--39728	164	2.0	165	97	2	619	27	16	13	42	1.85
41852--41891	20	2.0	20	95	4	73	37	32	5	25	1.77
42772--42828	11	5.4	11	91	2	73	1	3	10	84	0.82
44366--44390	6	4.2	6	100	0	50	16	0	32	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51425--51453	12	2.4	12	100	0	58	0	13	6	79	0.93
51400--51461	20	3.2	19	78	15	63	0	9	12	77	0.99
53714--53743	14	2.1	14	93	0	51	0	16	0	83	0.65
53725--53786	28	2.2	29	82	2	81	6	17	12	62	1.50
53726--53793	29	2.3	29	85	5	84	5	16	11	66	1.42
56570--56613	19	2.3	20	88	7	65	20	13	0	65	1.26
59330--59380	19	2.6	20	90	3	77	43	5	15	35	1.71
60290--60349	30	2.0	31	83	3	77	55	10	8	26	1.61
64126--64187	12	5.1	12	86	3	61	38	33	4	22	1.76
64136--64187	24	2.1	25	89	3	79	38	34	5	21	1.77
64661--64704	8	5.2	8	82	17	54	75	0	25	0	0.81
64661--64704	18	2.6	16	80	19	54	75	0	25	0	0.81
64661--64695	13	2.7	13	83	16	54	77	0	22	0	0.78
72966--73010	20	2.4	19	85	14	58	2	20	2	75	1.01
76089--76128	12	3.2	12	85	3	53	37	35	5	22	1.76
76357--76404	13	3.6	13	84	15	55	0	22	0	77	0.78
76367--76405	8	5.2	8	82	17	57	0	23	0	76	0.78
76362--76397	13	2.8	13	84	16	56	0	22	0	77	0.76
77139--77189	20	2.6	20	90	3	77	43	5	17	33	1.73
78099--78158	30	2.0	31	83	3	77	55	10	8	26	1.61
80156--80216	5	12.6	5	74	22	51	3	14	1	80	0.92
80156--80217	13	5.2	12	75	14	65	3	14	1	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84534--84558	13	1.9	13	100	0	50	48	28	8	16	1.74
88236--88298	18	3.4	18	79	16	67	77	1	17	3	0.97
88241--88286	21	2.1	21	92	8	74	80	0	17	2	0.81
88236--88299	28	2.3	28	84	10	78	78	1	17	3	0.96
88241--88299	14	4.6	13	78	18	61	77	1	16	3	0.98
90870--90905	13	2.8	13	100	0	72	33	38	5	22	1.77
90831--90925	48	1.9	50	89	4	149	30	36	4	28	1.76
91371--91417	14	3.1	15	75	12	51	72	6	19	2	1.17
96589--96668	35	2.2	37	91	4	128	31	37	3	27	1.74
103430--103510	35	2.2	37	91	4	130	30	37	3	28	1.75
104207--104243	19	2.0	20	84	10	51	37	21	24	16	1.93
107959--107983	8	3.1	8	100	0	50	76	0	24	0	0.80
114426--114450	13	1.9	13	100	0	50	48	28	8	16	1.74
122971--123043	30	2.4	30	90	0	110	27	30	10	31	1.91
124140--124185	24	1.9	24	95	0	83	19	26	17	36	1.94
124141--124192	24	2.2	24	89	0	77	25	26	13	34	1.93
125991--126067	37	2.2	36	86	9	106	31	37	3	27	1.75
129926--129981	20	2.8	21	79	15	64	78	3	16	1	0.97
138478--138557	35	2.2	37	88	4	119	31	36	3	28	1.75
149439--149493	27	2.0	27	82	6	67	25	10	30	32	1.90
163845--163896	22	2.3	23	90	3	79	28	1	34	34	1.69
163865--163936	36	2.0	36	88	0	108	27	5	37	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167966--168012	24	2.0	24	83	8	60	57	12	2	27	1.47
171292--171335	20	2.2	20	84	4	63	65	0	15	18	1.27

Tables:   1

The End!