Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008511.1 Hibiscus syriacus cultivar Beakdansim tig00111366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2221980
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 7 of 9
Found at i:1415043 original size:20 final size:20
Alignment explanation
Indices: 1415013--1415165 Score: 105
Period size: 20 Copynumber: 7.6 Consensus size: 20
1415003 TGGAAAATTT
*
1415013 GCGTTGTGATTTACATATTA
1 GCGTTGCGATTTACATATTA
* * *
1415033 TCGTTGCGATTTACCTATTC
1 GCGTTGCGATTTACATATTA
* *
1415053 GCGTTGCAAATTACATATTA
1 GCGTTGCGATTTACATATTA
* *
1415073 TCGTTGCGATTTA-ACTATTC
1 GCGTTGCGATTTACA-TATTA
*
1415093 GCGTTGCGATTTTGAC-T-TTC
1 GCGTTGCGA-TTT-ACATATTA
* * * * *
1415113 GTGTTGCGAATTTAGAAAATC
1 GCGTTGCG-ATTTACATATTA
* *
1415134 GCGTTGCGATTTACCTATTC
1 GCGTTGCGATTTACATATTA
1415154 GCGTTGCGATTT
1 GCGTTGCGATTT
1415166 TGGAACCTGT
Statistics
Matches: 103, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
19 2 0.02
20 86 0.83
21 14 0.14
22 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (20 bp):
GCGTTGCGATTTACATATTA
Found at i:1415067 original size:40 final size:40
Alignment explanation
Indices: 1415023--1415099 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
1415013 GCGTTGTGAT
*
1415023 TTACATATTATCGTTGCGATTTACCTATTCGCGTTGCAAA
1 TTACATATTATCGTTGCGATTTAACTATTCGCGTTGCAAA
1415063 TTACATATTATCGTTGCGATTTAACTATTCGCGTTGC
1 TTACATATTATCGTTGCGATTTAACTATTCGCGTTGC
1415100 GATTTTGACT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (40 bp):
TTACATATTATCGTTGCGATTTAACTATTCGCGTTGCAAA
Found at i:1415909 original size:14 final size:14
Alignment explanation
Indices: 1415870--1415901 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
1415860 ATATAATATC
1415870 ATGGATGGATGGTT
1 ATGGATGGATGGTT
1415884 ATGGATGGATGGTT
1 ATGGATGGATGGTT
1415898 ATGG
1 ATGG
1415902 GTTGATGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.34
Consensus pattern (14 bp):
ATGGATGGATGGTT
Found at i:1431530 original size:2 final size:2
Alignment explanation
Indices: 1431523--1431554 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1431513 TTCCTATAAA
1431523 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1431555 TACACAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1439976 original size:30 final size:26
Alignment explanation
Indices: 1439937--1440005 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 26
1439927 CTGACGTTGC
*
1439937 TGATCCCTATGAATAAAAAAAAAGCATCGT
1 TGATTCCTATGAA-AAAAAAAAA-C-T-GT
* * *
1439967 TGATTCCTATGGAAAAAAGACACTGT
1 TGATTCCTATGAAAAAAAAAAACTGT
1439993 TGATTCCTATGAA
1 TGATTCCTATGAA
1440006 CAACAAAAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 14 0.41
27 1 0.03
28 1 0.03
29 7 0.21
30 11 0.32
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (26 bp):
TGATTCCTATGAAAAAAAAAAACTGT
Found at i:1452098 original size:22 final size:22
Alignment explanation
Indices: 1452058--1452100 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
1452048 CGTTACGTAA
* *
1452058 CACCACAATACACTATAAATTG
1 CACCACAACAAACTATAAATTG
*
1452080 CACCACAACAAACTTTAAATT
1 CACCACAACAAACTATAAATT
1452101 ATCTGAAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (22 bp):
CACCACAACAAACTATAAATTG
Found at i:1452990 original size:31 final size:31
Alignment explanation
Indices: 1452954--1453022 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
1452944 GAGTATTGCT
1452954 AAGCTCGAATCG-ACTCGAAAACTCTGAAATG
1 AAGCTCGAATCGAACTCGAAAAC-CTGAAATG
* * * *
1452985 GAGCTCGACTCGAACTCGAAATCCTGAATTG
1 AAGCTCGAATCGAACTCGAAAACCTGAAATG
1453016 AAGCTCG
1 AAGCTCG
1453023 TGAGCAGCTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 23 0.72
32 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (31 bp):
AAGCTCGAATCGAACTCGAAAACCTGAAATG
Found at i:1453729 original size:21 final size:20
Alignment explanation
Indices: 1453689--1453734 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
1453679 TTGATTTTAA
*
1453689 TAAAATTTTATTTATGAAAT
1 TAAAATTTTATTTATAAAAT
*
1453709 TAAACATTTTATTTTTAAAA-
1 TAAA-ATTTTATTTATAAAAT
1453729 TAAAAT
1 TAAAAT
1453735 ATTAAAAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 8 0.35
21 13 0.57
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
TAAAATTTTATTTATAAAAT
Found at i:1453790 original size:15 final size:15
Alignment explanation
Indices: 1453770--1453803 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1453760 ATATTAAAAG
1453770 ATAAATATAAAATTT
1 ATAAATATAAAATTT
*
1453785 ATAAATATAATATTT
1 ATAAATATAAAATTT
1453800 -TAAA
1 ATAAA
1453804 CGTAATGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAAATATAAAATTT
Found at i:1454742 original size:30 final size:28
Alignment explanation
Indices: 1454704--1454770 Score: 84
Period size: 30 Copynumber: 2.4 Consensus size: 28
1454694 TCTATATAAG
*
1454704 AGAG-AGAGAGCTAGATCAGGGGCAGAGAA
1 AGAGTAGAGAGATAGATCAGGGG-A-AGAA
*
1454733 AGAGTAGAGAGATGGATCAGGGGAAGAA
1 AGAGTAGAGAGATAGATCAGGGGAAGAA
1454761 AGAGT-GAGAG
1 AGAGTAGAGAG
1454771 GGAGTCCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 5 0.14
28 9 0.26
29 5 0.14
30 16 0.46
ACGTcount: A:0.42, C:0.06, G:0.43, T:0.09
Consensus pattern (28 bp):
AGAGTAGAGAGATAGATCAGGGGAAGAA
Found at i:1460715 original size:24 final size:24
Alignment explanation
Indices: 1460647--1460708 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
1460637 CAGTGGATTG
*
1460647 ATCTGCATCCTCTTTTGCGGCAGC
1 ATCTGCATCCTCTTTTGCAGCAGC
*
1460671 ATCTGCATCCTGTTTTGCAGCAGC
1 ATCTGCATCCTCTTTTGCAGCAGC
*
1460695 ATCTGCAACCTCTT
1 ATCTGCATCCTCTT
1460709 GTACAGCCTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.16, C:0.32, G:0.18, T:0.34
Consensus pattern (24 bp):
ATCTGCATCCTCTTTTGCAGCAGC
Found at i:1461240 original size:6 final size:6
Alignment explanation
Indices: 1461231--1461257 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
1461221 TCAGCCTCAG
1461231 CCTCGA CCTCGA CCTCGA CCTCGA CCT
1 CCTCGA CCTCGA CCTCGA CCTCGA CCT
1461258 TATTCTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.52, G:0.15, T:0.19
Consensus pattern (6 bp):
CCTCGA
Found at i:1465665 original size:24 final size:23
Alignment explanation
Indices: 1465615--1465795 Score: 204
Period size: 23 Copynumber: 7.8 Consensus size: 23
1465605 ATAAATTGCA
* *
1465615 CCGAAGTG-CCACATAGATTTGTC
1 CCGAAG-GACCACGTAGAATTGTC
* *
1465638 CCGAATGACCGCGTAGAAATTGTC
1 CCGAAGGACCACGTAG-AATTGTC
1465662 CCGAAGGACCACGTAGAATTTGTC
1 CCGAAGGACCACGTAGAA-TTGTC
*
1465686 TCGAAGGACCACGTAGAATTGTC
1 CCGAAGGACCACGTAGAATTGTC
1465709 CCGAAGGACCACGTAGAATTGTC
1 CCGAAGGACCACGTAGAATTGTC
* * *
1465732 CCGAAGGACCACATAGATTTATC
1 CCGAAGGACCACGTAGAATTGTC
* * * *
1465755 CCGAATGACCGCATAGATTTGTC
1 CCGAAGGACCACGTAGAATTGTC
1465778 CC-AGAGGACCACGTAGAA
1 CCGA-AGGACCACGTAGAA
1465796 CCATCGACTC
Statistics
Matches: 136, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
22 2 0.01
23 92 0.68
24 42 0.31
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.20
Consensus pattern (23 bp):
CCGAAGGACCACGTAGAATTGTC
Found at i:1466989 original size:3 final size:3
Alignment explanation
Indices: 1466981--1467551 Score: 531
Period size: 3 Copynumber: 195.0 Consensus size: 3
1466971 TTAAATCACC
1466981 GAA GAA GAA GAA G-A GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-AA
* *
1467029 GAA GAA GGA GAA -AA GGA -AA GAA G-A GAA GAA GAA GAA G-A GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* * *
1467073 G-A GAA GGA GAA -AA GGA GAA -AA GAA G-A GAA GGA GAA GAA G-A GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1467116 GAA GAA GAA G-A GAA G-A GAA GAA GAA G-A GAA GAA -AA GGAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -GAA GAA
* * *
1467158 GAA GAA GAA GGA GAA GGA -AA GAGA GAAA GAA GAA G-A GGA GAA GGAA
1 GAA GAA GAA GAA GAA GAA GAA GA-A G-AA GAA GAA GAA GAA GAA -GAA
*
1467204 GAA GAA GAA GAA -AA GAA GAA GAA GAA -AA GAA AAA G-A GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1467249 GAA GAA GAA GAA GAA GAA G-A GAA G-A GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1467295 GAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GAA GAA -AA GAA GGAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -GAA
* * * * *
1467339 GGA GAA GAAA GAA G-A GGA GAA GAA GGGA GGA GAA GGAA -AA AAA GAGA
1 GAA GAA G-AA GAA GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GA-A
* * * * *
1467386 GAA GAA GGA GGA -AA GAA -AGA GAG GGA GAGA GGA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GA-A GAA GAA GA-A GAA GAA GAA GAA GAA
* * * *
1467431 GGA GAAA GAA GGA GGA GAA GAA GAA GAA GAA GAA GGA -AA GAA G-A
1 GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* *
1467475 GAA GAA -AA AAA TAA G-A GAAA GAGA GAA GAA GAAA GAA GAAA GAGA
1 GAA GAA GAA GAA GAA GAA G-AA GA-A GAA GAA G-AA GAA G-AA GA-A
1467520 GAA G-A GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1467552 AAGTGAGCCA
Statistics
Matches: 479, Mismatches: 39, Indels: 100
0.78 0.06 0.16
Matches are distributed among these distances:
2 59 0.12
3 374 0.78
4 45 0.09
5 1 0.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:1467480 original size:251 final size:243
Alignment explanation
Indices: 1466982--1467551 Score: 646
Period size: 251 Copynumber: 2.3 Consensus size: 243
1466972 TAAATCACCG
* * * *
1466982 AAGAAGAAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAGGAGAAAAGGA-
1 AAGAAG-AGAAGAAAAGAAAAAG-AGAAGAAGAAGAAGAAGAAG-AAGAAGAA-GAGAAGAGAAG
*
1467046 AAGAAG-AGAAGAAGAAGAAG-AGAAGAAGAGAAGGAGAAAAGGAGAAAAGAAGAGAAGGAGAAG
62 AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAAAGGAGAAAAGAAGAGAAGGAGAAG
* *
1467109 AAGAGAAGAAGAAGAAGAGAAGAGAAGAAGAAGAGAAGAAAAGGAAGAAGAAGAAGAAGGAGAAG
127 AAGAGAAGAAGAAGAAGAGAAGAGAAGAAAAAAAGAAGAAAAGGAAGAAGAAGAAGAAGGAGAAG
*
1467174 GAAAGAGAGAAAGAAGAAGAGGAGAA-G--GAAGAAGAAG--AAGAA-AAG-
192 GAAAGAGAGAAAGAAGAAGAGAAGAAGGAAGAAGAAGAAGAAAAGAAGAAGA
1467219 AAG-A-AGAAGAAAAGAAAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAGAAGAAGA
1 AAGAAGAGAAGAAAAGAAAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAGAAGAAGA
1467282 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAGAAG-GAAGGAGAAG
66 AGAAGAAGAAGAAGAAGAAGAAGAAG-AGAAGAAGAA-AAG-G-AGAAAAGAAGAGAAGGAGAAG
* * * *
1467346 AA-AGAAGAGGAGAAGAAGGGAGGAGAAGGAAAAAAAGAGAGAAGAAGGAGGAAAGAA-AGAGAG
127 AAGAGAAGA--AGAAGAAGAGAAGAGAA-GAAAAAAAGA-AGAA-AAGGAAG-AAGAAGA-AGAA
* *
1467409 GGAGAGAGGAGAAGA-AG-AAGAAGGAGA-AAGAAGG-AGGAGAAGAAGAAGAAGAAGAAGGA
185 GGAGA-AGGA-AAGAGAGAAAGAAGAAGAGAAGAAGGAAGAAGAAGAAGAA-AAGAAGAA-GA
1467468 AAGAAGAGAAGAAAA-AAATAAGAG-A-AAGAGAGAAGAAGAAAGAAGAA-AGAGAGAAGAGAAG
1 AAGAAGAGAAGAAAAGAAA-AAGAGAAGAAGA-AGAAGAAG-AAGAAGAAGA-AGAGAAGAGAAG
1467529 AAGAAGAAGAAGAAGAAGAAGAA
62 AAGAAGAAGAAGAAGAAGAAGAA
1467552 AAGTGAGCCA
Statistics
Matches: 289, Mismatches: 14, Indels: 46
0.83 0.04 0.13
Matches are distributed among these distances:
231 8 0.03
232 14 0.05
233 34 0.12
234 22 0.08
235 9 0.03
236 10 0.03
237 16 0.06
238 25 0.09
239 8 0.03
240 4 0.01
241 11 0.04
242 23 0.08
243 15 0.05
244 4 0.01
246 5 0.02
247 2 0.01
248 1 0.00
249 7 0.02
250 14 0.05
251 57 0.20
ACGTcount: A:0.63, C:0.00, G:0.36, T:0.00
Consensus pattern (243 bp):
AAGAAGAGAAGAAAAGAAAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGAAAAGGAGAAAAGAAGAGAAGGAGAAGAAGA
GAAGAAGAAGAAGAGAAGAGAAGAAAAAAAGAAGAAAAGGAAGAAGAAGAAGAAGGAGAAGGAAA
GAGAGAAAGAAGAAGAGAAGAAGGAAGAAGAAGAAGAAAAGAAGAAGA
Found at i:1469848 original size:30 final size:32
Alignment explanation
Indices: 1469808--1469883 Score: 104
Period size: 31 Copynumber: 2.4 Consensus size: 32
1469798 TTAAAATCGT
*
1469808 TTTTATAATAATTTGA-AAAGTATAATGAATA-
1 TTTTATAATAATTTGATAAAATATAAT-AATAC
*
1469839 TTTT-TAATAATTTGATAAAATTTAATAATAC
1 TTTTATAATAATTTGATAAAATATAATAATAC
1469870 TTTTATAATAATTT
1 TTTTATAATAATTT
1469884 AAATCGTTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
30 15 0.38
31 16 0.40
32 9 0.22
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (32 bp):
TTTTATAATAATTTGATAAAATATAATAATAC
Found at i:1469877 original size:21 final size:22
Alignment explanation
Indices: 1469843--1469885 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
1469833 TGAATATTTT
1469843 TAATAATTTGATAA-AATTTAA
1 TAATAATTTGATAATAATTTAA
* *
1469864 TAATACTTTTATAATAATTTAA
1 TAATAATTTGATAATAATTTAA
1469886 ATCGTTCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
TAATAATTTGATAATAATTTAA
Found at i:1474860 original size:2 final size:2
Alignment explanation
Indices: 1474853--1474898 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
1474843 TTTGGTTTCT
1474853 TC TC TC TC TC TC TC TC TC TC TC -C TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1474894 TC TC T
1 TC TC T
1474899 TCGTTTTATG
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1479287 original size:3 final size:3
Alignment explanation
Indices: 1479279--1479336 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
1479269 TGGTATAATC
1479279 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1479327 TAT TAT TAT T
1 TAT TAT TAT T
1479337 TGGTTAATGT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1479918 original size:13 final size:13
Alignment explanation
Indices: 1479880--1479919 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
1479870 AAGAAAGAGG
*
1479880 AAAACATATCATA
1 AAAATATATCATA
1479893 AAAATA-A--ATA
1 AAAATATATCATA
1479903 AAAATATATCATA
1 AAAATATATCATA
1479916 AAAA
1 AAAA
1479920 CATAGTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 9 0.39
11 1 0.04
12 1 0.04
13 12 0.52
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATATATCATA
Found at i:1480698 original size:31 final size:31
Alignment explanation
Indices: 1480658--1480718 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
1480648 TGTTATACAT
* * *
1480658 TCAGGTCAGATCGGGTAAAATCTTGTTTTGG
1 TCAGATCAGATCGGATAAAATCTTATTTTGG
*
1480689 TCAGATCAGATCGGATGAAATCTTATTTTG
1 TCAGATCAGATCGGATAAAATCTTATTTTG
1480719 ATCTAATCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (31 bp):
TCAGATCAGATCGGATAAAATCTTATTTTGG
Found at i:1488082 original size:2 final size:2
Alignment explanation
Indices: 1488075--1488103 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1488065 ACTTGATGCA
1488075 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1488104 ATTCTTACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1495935 original size:64 final size:63
Alignment explanation
Indices: 1495860--1495979 Score: 168
Period size: 64 Copynumber: 1.9 Consensus size: 63
1495850 ATTGTTTAAG
* ** * *
1495860 GTGTATCGATGCACATGAAGTGCATCGATGTACTCCTTTAAAATAAAAACATCGAATACCATCA
1 GTGTATCGATGCACAAGAAGTGCATCGATACACCCCCTT-AAATAAAAACATCGAATACCATCA
* *
1495924 GTGTATCGATGCACAAGTAGTGCATCGATACACCCCCTTAAATACAAACATCGAAT
1 GTGTATCGATGCACAAGAAGTGCATCGATACACCCCCTTAAATAAAAACATCGAAT
1495980 GAGATTTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
63 16 0.33
64 33 0.67
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.25
Consensus pattern (63 bp):
GTGTATCGATGCACAAGAAGTGCATCGATACACCCCCTTAAATAAAAACATCGAATACCATCA
Found at i:1495999 original size:63 final size:64
Alignment explanation
Indices: 1495860--1496021 Score: 186
Period size: 63 Copynumber: 2.5 Consensus size: 64
1495850 ATTGTTTAAG
* * * * *
1495860 GTGTATCGATGCACATGAAGTGCATCGATGTACTCCTTTAAAATAAAAACATCGAATACCATCA
1 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCCCTTAAAATAAAAACATCGAATACCATCA
* * * *
1495924 GTGTATCGATGCACAAGTAGTGCATCGATACACCCCCTT-AAATACAAACATCGAATGA-GATTT
1 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCCCTTAAAATAAAAACATCGAAT-ACCA-TC
1495987 A
64 A
* *
1495988 -TGTATCGATGCATAGGTAGTGCATCGATGCACCC
1 GTGTATCGATGCACAAGTAGTGCATCGATGCACCC
1496022 GTCAAGGGAT
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
63 48 0.57
64 36 0.43
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (64 bp):
GTGTATCGATGCACAAGTAGTGCATCGATGCACCCCCTTAAAATAAAAACATCGAATACCATCA
Found at i:1496671 original size:23 final size:23
Alignment explanation
Indices: 1496644--1496725 Score: 110
Period size: 23 Copynumber: 3.6 Consensus size: 23
1496634 ATCTTATATA
*
1496644 GCACTACGGTGCAATTCTACGTG
1 GCACTTCGGTGCAATTCTACGTG
* * *
1496667 ACACTTCGGTGAAATTCTACGCG
1 GCACTTCGGTGCAATTCTACGTG
*
1496690 GCACTTCTGTGCAATTCTACGTG
1 GCACTTCGGTGCAATTCTACGTG
*
1496713 GCACTTTGGTGCA
1 GCACTTCGGTGCA
1496726 TTTATACGAA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (23 bp):
GCACTTCGGTGCAATTCTACGTG
Found at i:1497694 original size:18 final size:18
Alignment explanation
Indices: 1497671--1497711 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
1497661 TGAGAAATTT
1497671 GGGAGCTCCCGAATTTAA
1 GGGAGCTCCCGAATTTAA
1497689 GGGAGCTCCCGAATTTAA
1 GGGAGCTCCCGAATTTAA
*
1497707 AGGAG
1 GGGAG
1497712 AATCTGAGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.32, T:0.20
Consensus pattern (18 bp):
GGGAGCTCCCGAATTTAA
Found at i:1508191 original size:32 final size:31
Alignment explanation
Indices: 1508151--1508219 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 31
1508141 TAACCTTTAA
*
1508151 TTTATTATTATTCAAAGAAACAACTGCACAT
1 TTTATTATTATTCAAACAAACAACTGCACAT
* * *
1508182 TTTACTTATTATTGAAACAAACAAGTGCAGAT
1 TTTA-TTATTATTCAAACAAACAACTGCACAT
1508214 TTTATT
1 TTTATT
1508220 TAACATAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 6 0.18
32 27 0.82
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (31 bp):
TTTATTATTATTCAAACAAACAACTGCACAT
Found at i:1511305 original size:289 final size:280
Alignment explanation
Indices: 1510843--1511415 Score: 1017
Period size: 289 Copynumber: 2.0 Consensus size: 280
1510833 AAGAATTATC
1510843 AAATGTAAGAATCAGCAGACACGTATTTTATTATTATTATAAAATGTTTCGATATAGGAAAAATG
1 AAATGTAAGAATCAGCAGACACGTATTTTATTATTATTATAAAATGTTTCGATATAGGAAAAATG
1510908 TATGAAATTATATTACATATGGTTATTATTATTTGATTTTGATTATCGATCTATTATTTATCAGT
66 TATGAAATTATATTACATATGGTTATTATTATTTGATTTTGATTATCGATCTATTATTTATCAGT
1510973 TAATTATTTAAATGTTATCAATCTAGTCATCTCATATCAATATTTAACGAAAATATTGATGTATA
131 TAATTATTTAAATGTTATCAATCTAGTCATCTCATATCAATATTTAACGAAAATATTGATGTATA
1511038 AGTTAATAAATTAGTATAATTACATATTTAATCTTCAAGACTTACATATTTTATAAAATTAGTCT
196 AGTTAATAAATTAGTATAATTACATATTTAATCTTCAAGACTTACATATTTTATAAAATTAGTCT
1511103 TATTG-AAA-TTAATTTAA-
261 TATTGAAAATTTAATTTAAT
1511120 AAATGTAAGAATCAGCAGACACGTATTTTATTATTATTATAAAATGTTTCGATTATAGGAAAAAT
1 AAATGTAAGAATCAGCAGACACGTATTTTATTATTATTATAAAATGTTTCGA-TATAGGAAAAAT
1511185 GTATGAAATTATAATATTACACATATGGTTATATTATTATTTTTGATTTTGATTATCGATCTATT
65 GTATGAAA-T-T-ATATT--ACATATGG-T-TATTATTA--TTTGATTTTGATTATCGATCTATT
1511250 AATTTTATCAGTTAATTATTTAAATGTTATCAATCTAGTCATCTCATATCAATATTTAACGAAAA
121 -A-TTTATCAGTTAATTATTTAAATGTTATCAATCTAGTCATCTCATATCAATATTTAACGAAAA
1511315 TATTGATGTATAAGTTAATAAATTAGTATAATTACATATTTAATCTTCAAGACTTACATATTTTA
184 TATTGATGTATAAGTTAATAAATTAGTATAATTACATATTTAATCTTCAAGACTTACATATTTTA
1511380 TAAAATTAGTCTTATTGAAAATTTAATTTAAT
249 TAAAATTAGTCTTATTGAAAATTTAATTTAAT
1511412 AAAT
1 AAAT
1511416 TTAATCCTCC
Statistics
Matches: 281, Mismatches: 0, Indels: 15
0.95 0.00 0.05
Matches are distributed among these distances:
277 52 0.19
278 20 0.07
279 1 0.00
280 1 0.00
281 5 0.02
283 8 0.03
284 1 0.00
285 8 0.03
287 24 0.09
288 1 0.00
289 144 0.51
290 3 0.01
291 9 0.03
292 4 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (280 bp):
AAATGTAAGAATCAGCAGACACGTATTTTATTATTATTATAAAATGTTTCGATATAGGAAAAATG
TATGAAATTATATTACATATGGTTATTATTATTTGATTTTGATTATCGATCTATTATTTATCAGT
TAATTATTTAAATGTTATCAATCTAGTCATCTCATATCAATATTTAACGAAAATATTGATGTATA
AGTTAATAAATTAGTATAATTACATATTTAATCTTCAAGACTTACATATTTTATAAAATTAGTCT
TATTGAAAATTTAATTTAAT
Found at i:1511560 original size:12 final size:12
Alignment explanation
Indices: 1511540--1511577 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
1511530 AAATTATAAC
*
1511540 TAATATATTAAT
1 TAATATATTAAA
*
1511552 TATTATATTAAA
1 TAATATATTAAA
1511564 TAATATATTAAA
1 TAATATATTAAA
1511576 TA
1 TA
1511578 TATTTATGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATATATTAAA
Found at i:1515022 original size:33 final size:34
Alignment explanation
Indices: 1514961--1515060 Score: 139
Period size: 33 Copynumber: 3.0 Consensus size: 34
1514951 AAATTTAATG
*
1514961 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
1514995 TTAAATTT-GAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
1515028 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
1515061 AATATTTATC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.50
34 28 0.50
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:1515637 original size:21 final size:21
Alignment explanation
Indices: 1515613--1515666 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
1515603 GCTAGGAATG
*
1515613 TAACCCTGCGGGCTCGAAATA
1 TAACCCTGCGGACTCGAAATA
* *
1515634 TAACCCTGCGGACTCGGAATG
1 TAACCCTGCGGACTCGAAATA
1515655 TAACCCTGCGGA
1 TAACCCTGCGGA
1515667 GATGGCATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (21 bp):
TAACCCTGCGGACTCGAAATA
Found at i:1515638 original size:42 final size:42
Alignment explanation
Indices: 1515572--1515665 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
1515562 TATGGTATAA
** *
1515572 AACCCTGCGGGCTAGGCATGTAA-CCTG-GCGAGCTAGGAATGT
1 AACCCTGCGGGCTAGAAATATAACCCTGCG-GA-CTAGGAATGT
* *
1515614 AACCCTGCGGGCTCGAAATATAACCCTGCGGACTCGGAATGT
1 AACCCTGCGGGCTAGAAATATAACCCTGCGGACTAGGAATGT
1515656 AACCCTGCGG
1 AACCCTGCGG
1515666 AGATGGCATA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 38 0.84
43 6 0.13
44 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.18
Consensus pattern (42 bp):
AACCCTGCGGGCTAGAAATATAACCCTGCGGACTAGGAATGT
Found at i:1515694 original size:20 final size:21
Alignment explanation
Indices: 1515669--1515715 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
1515659 CCTGCGGAGA
*
1515669 TGGCATAT-AAATGGTGGGCT
1 TGGCATATGAAATGGAGGGCT
*
1515689 TGGCATATGAAGTGGAGGGCT
1 TGGCATATGAAATGGAGGGCT
*
1515710 GGGCAT
1 TGGCAT
1515716 GTACCCCTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.23, C:0.11, G:0.40, T:0.26
Consensus pattern (21 bp):
TGGCATATGAAATGGAGGGCT
Found at i:1517328 original size:17 final size:16
Alignment explanation
Indices: 1517306--1517370 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 16
1517296 TTATATAAAT
1517306 TATTTATAAAAATATAA
1 TATTTA-AAAAATATAA
*
1517323 TATTTACATAAATATTTAA
1 TATTTA-A-AAA-ATATAA
1517342 TA--TAAAAAATAATAA
1 TATTTAAAAAAT-ATAA
1517357 CTATTTAAAAAATA
1 -TATTTAAAAAATA
1517371 CTAACATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
14 2 0.05
15 6 0.15
16 3 0.08
17 10 0.26
18 11 0.28
19 7 0.18
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
TATTTAAAAAATATAA
Found at i:1517334 original size:30 final size:31
Alignment explanation
Indices: 1517282--1517356 Score: 91
Period size: 30 Copynumber: 2.4 Consensus size: 31
1517272 TTAATAATTC
*
1517282 TAAATAAATAATAATTATATAAATTATTT-ATA
1 TAAA-AAATAATAATTACATAAA-TATTTAATA
* *
1517314 -AAAATATAATATTTACATAAATATTTAATA
1 TAAAAAATAATAATTACATAAATATTTAATA
1517344 TAAAAAATAATAA
1 TAAAAAATAATAA
1517357 CTATTTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 5 0.14
30 18 0.50
31 13 0.36
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (31 bp):
TAAAAAATAATAATTACATAAATATTTAATA
Found at i:1517385 original size:32 final size:33
Alignment explanation
Indices: 1517311--1517385 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
1517301 TAAATTATTT
* * *
1517311 ATAAAAAT-ATAATATTTACATAAATATTTAAT
1 ATAAAAATAATAATATTTACAAAAATATCTAAC
1517343 ATAAAAAATAATAACTATTTA-AAAAATA-CTAAC
1 AT-AAAAATAATAA-TATTTACAAAAATATCTAAC
1517376 ATAAAAATAA
1 ATAAAAATAA
1517386 ATTTCTTACC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 10 0.27
33 11 0.30
34 10 0.27
35 6 0.16
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (33 bp):
ATAAAAATAATAATATTTACAAAAATATCTAAC
Found at i:1520674 original size:13 final size:13
Alignment explanation
Indices: 1520656--1520712 Score: 86
Period size: 13 Copynumber: 4.7 Consensus size: 13
1520646 CGGTCATAAT
1520656 CCGTTGACCCGAC
1 CCGTTGACCCGAC
1520669 CCGTTGACCCGAC
1 CCGTTGACCCGAC
1520682 CCGTTGACCCGAC
1 CCGTTGACCCGAC
1520695 CC---GACCCGA-
1 CCGTTGACCCGAC
1520704 CCGTTGACC
1 CCGTTGACC
1520713 GTTGACCGGT
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
9 2 0.05
10 7 0.17
12 4 0.10
13 28 0.68
ACGTcount: A:0.16, C:0.47, G:0.23, T:0.14
Consensus pattern (13 bp):
CCGTTGACCCGAC
Found at i:1520795 original size:29 final size:29
Alignment explanation
Indices: 1520749--1520899 Score: 121
Period size: 29 Copynumber: 5.3 Consensus size: 29
1520739 ATTCGGTTTT
* * *
1520749 GGTGCTAATCTGGGAATTAATTTGAAATG
1 GGTGCTATTTTGGGAATTAATTTGAAAAG
* *
1520778 GGTGCTATTTTGGTAA-T--TTTCAAAA-
1 GGTGCTATTTTGGGAATTAATTTGAAAAG
** * * * **
1520803 AATGATATTCTGGGAATTAATTCGAAATT
1 GGTGCTATTTTGGGAATTAATTTGAAAAG
* *
1520832 GGTGCTATTTTGAGAATTAATTCGAAAAG
1 GGTGCTATTTTGGGAATTAATTTGAAAAG
* * *
1520861 GGTGCTATTTTGGTAATTATTTTAAAAAG
1 GGTGCTATTTTGGGAATTAATTTGAAAAG
1520890 GGTGCTATTT
1 GGTGCTATTT
1520900 GTGTAAAATG
Statistics
Matches: 93, Mismatches: 25, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
25 11 0.12
26 7 0.08
28 6 0.06
29 69 0.74
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.40
Consensus pattern (29 bp):
GGTGCTATTTTGGGAATTAATTTGAAAAG
Found at i:1520864 original size:83 final size:83
Alignment explanation
Indices: 1520725--1520878 Score: 236
Period size: 83 Copynumber: 1.9 Consensus size: 83
1520715 TGACCGGTGT
*** * * *
1520725 TATTCTGGGAATTAATTCGGTTTTGGTGCTAATCTGGGAATTAATTTGAAATGGGTGCTATTTTG
1 TATTCTGGGAATTAATTCGAAATTGGTGCTAATCTGAGAATTAATTCGAAAAGGGTGCTATTTTG
1520790 GTAATTTTCAAAAAATGA
66 GTAATTTTCAAAAAATGA
* *
1520808 TATTCTGGGAATTAATTCGAAATTGGTGCTATTTTGAGAATTAATTCGAAAAGGGTGCTATTTTG
1 TATTCTGGGAATTAATTCGAAATTGGTGCTAATCTGAGAATTAATTCGAAAAGGGTGCTATTTTG
1520873 GTAATT
66 GTAATT
1520879 ATTTTAAAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 63 1.00
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (83 bp):
TATTCTGGGAATTAATTCGAAATTGGTGCTAATCTGAGAATTAATTCGAAAAGGGTGCTATTTTG
GTAATTTTCAAAAAATGA
Found at i:1521636 original size:24 final size:24
Alignment explanation
Indices: 1521604--1521655 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
1521594 ATAGTTTATC
* *
1521604 TGATTTTTGACCTGGATTCTGATA
1 TGATGTTTGACCTGAATTCTGATA
* *
1521628 TGATGTTTGACCTGAATTTTTATA
1 TGATGTTTGACCTGAATTCTGATA
1521652 TGAT
1 TGAT
1521656 ACTTGACATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (24 bp):
TGATGTTTGACCTGAATTCTGATA
Found at i:1521661 original size:24 final size:24
Alignment explanation
Indices: 1521610--1521692 Score: 69
Period size: 24 Copynumber: 3.5 Consensus size: 24
1521600 TATCTGATTT
* **
1521610 TTGACCTGGATTCTGATATGATGT
1 TTGACCTGAATTCTGATATGATAC
* *
1521634 TTGACCTGAATTTTTATATGATAC
1 TTGACCTGAATTCTGATATGATAC
* * * * *
1521658 TTGACATGGACTCTGTTTTG-TAC
1 TTGACCTGAATTCTGATATGATAC
1521681 TTGACCTGAATT
1 TTGACCTGAATT
1521693 ATGTTTTAAT
Statistics
Matches: 44, Mismatches: 15, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
23 12 0.27
24 32 0.73
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.43
Consensus pattern (24 bp):
TTGACCTGAATTCTGATATGATAC
Found at i:1526734 original size:24 final size:25
Alignment explanation
Indices: 1526702--1526891 Score: 114
Period size: 24 Copynumber: 7.5 Consensus size: 25
1526692 TCTTATTTCT
1526702 ATTTA-ATAATGATTACTAATAATG
1 ATTTATATAATGATTACTAATAATG
* * *
1526726 ATTTA-ATAATAATTATTAATTTAATTTT
1 ATTTATATAATGATTACTAA--TAA--TG
*
1526754 TTTTATATTTAATGATT--TAATAATG
1 ATTTATA--TAATGATTACTAATAATG
*
1526779 ATATGATATAATGATTACTAATAATG
1 AT-TTATATAATGATTACTAATAATG
1526805 ATTTATTATTAAT-ATT--TAATAAT-
1 ATTTA-TA-TAATGATTACTAATAATG
*
1526828 -TTGATACTAATGATTTATACTAATAATG
1 ATTTATA-TAATGA--T-TACTAATAATG
**
1526856 A-AAATATAATGATTACTAATAATG
1 ATTTATATAATGATTACTAATAATG
1526880 ATTTA-ATAATGA
1 ATTTATATAATGA
1526892 AAAAATGTTT
Statistics
Matches: 130, Mismatches: 15, Indels: 42
0.70 0.08 0.22
Matches are distributed among these distances:
21 6 0.05
22 4 0.03
24 52 0.40
25 7 0.05
26 22 0.17
27 20 0.15
28 8 0.06
29 4 0.03
31 7 0.05
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.46
Consensus pattern (25 bp):
ATTTATATAATGATTACTAATAATG
Found at i:1526886 original size:11 final size:12
Alignment explanation
Indices: 1526705--1526891 Score: 68
Period size: 13 Copynumber: 14.8 Consensus size: 12
1526695 TATTTCTATT
1526705 TAATAATGATTA
1 TAATAATGATTA
1526717 CTAATAATGATT-
1 -TAATAATGATTA
*
1526729 TAATAATAATTA
1 TAATAATGATTA
**
1526741 TTAATTTAATTTTTTTTA
1 -TAA--TAA---TGATTA
*
1526759 TATTTAATGATT-
1 TA-ATAATGATTA
1526771 TAATAATGA-TA
1 TAATAATGATTA
1526782 TGATATAATGATTA
1 T-A-ATAATGATTA
1526796 CTAATAATGATTTA
1 -TAATAATGA-TTA
*
1526810 TTATTAAT-ATT-
1 -TAATAATGATTA
1526821 TAATAAT--TTGA
1 TAATAATGATT-A
*
1526832 TACTAATGATTTATA
1 TAATAATGA--T-TA
**
1526847 CTAATAATGAAAA
1 -TAATAATGATTA
1526860 T-ATAATGATTA
1 TAATAATGATTA
1526871 CTAATAATGATT-
1 -TAATAATGATTA
1526883 TAATAATGA
1 TAATAATGA
1526892 AAAAATGTTT
Statistics
Matches: 134, Mismatches: 16, Indels: 50
0.67 0.08 0.25
Matches are distributed among these distances:
9 2 0.01
10 7 0.05
11 40 0.30
12 7 0.05
13 42 0.31
14 12 0.09
15 6 0.04
16 12 0.09
17 2 0.01
18 4 0.03
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.46
Consensus pattern (12 bp):
TAATAATGATTA
Found at i:1527970 original size:29 final size:28
Alignment explanation
Indices: 1527938--1528009 Score: 101
Period size: 27 Copynumber: 2.5 Consensus size: 28
1527928 TCAAAATAAA
1527938 ATTCTCTAATTATTTTTATTTTACAAAAT
1 ATTCTCTAATTATTTTT-TTTTACAAAAT
*
1527967 ATTCTCTAAATA-TTTTTTTTACAAAAT
1 ATTCTCTAATTATTTTTTTTTACAAAAT
*
1527994 ATTCTTTAATTGATTT
1 ATTCTCTAATT-ATTT
1528010 AAGATTAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 20 0.53
28 5 0.13
29 13 0.34
ACGTcount: A:0.33, C:0.10, G:0.01, T:0.56
Consensus pattern (28 bp):
ATTCTCTAATTATTTTTTTTTACAAAAT
Found at i:1529925 original size:298 final size:297
Alignment explanation
Indices: 1529390--1529971 Score: 877
Period size: 298 Copynumber: 2.0 Consensus size: 297
1529380 CACCTTTCCT
**
1529390 ATTTTATTTGTTTTCAAATTTAACACAGCAGAGAAATCTCCCGACCCCCCACATGTAGAGAAAGA
1 ATTTTATTTGTTTTCAAATTTAACACAGCAGAGAAATCTCCCGACCCCCCACATACAGAGAAAGA
* *
1529455 ATGCAGAGCTGAAGACGCCAAGAAATCAGAGACCCTTCTCTACCTATTTTAACTAAAGACGCAGA
66 ATGCAGAGCTGAAGACGCCAAGAAATCAGAGACCATTATCTACCTATTTTAACTAAAGACGCAGA
* *
1529520 GTAATCCCCACTGATTACGCATGCAAAATTTTAGCTTGAAGACGCCGAGATATCCTGAGATCTTT
131 GTAATCCCCACTGATTACGAATGCAAAATTTTAGCTTGAAGACGCCGAGATATCCTGAGATATTT
* * *
1529585 AGGAGTGTACTGTAGAAAATACCCCAAATAGGGAAATAATATTAGAACCACGTTACTGTGGGAAA
196 AGGAGTGTACCGTAGAAAATACCCCAAATAGGAAAATAATATTAGAACCACATTACTGTGGGAAA
1529650 TAATTTTCCCATACTGCATTATTCTGGCATTTTTGCC
261 TAATTTTCCCATACTGCATTATTCTGGCATTTTTGCC
* * ***
1529687 ATTTTATTTGTTTTCTAATTTAA-AGCAGCAGAGGAATCTCCCGGGGGCCCCACATACAGAGAAA
1 ATTTTATTTGTTTTCAAATTTAACA-CAGCAGAGAAATCTCCC-GACCCCCCACATACAGAGAAA
* * *
1529751 GAATGTC-GAGCTGAAGACGCCGAGAAATCAGAGGCCATTATCTACCTATTTTAACTAAAGATGT
64 GAATG-CAGAGCTGAAGACGCCAAGAAATCAGAGACCATTATCTACCTATTTTAACTAAAGACG-
* * *
1529815 C-GAGTAATCCCCA-TGGATTATGAATGCAAAATTTTAGCTTGAAGACGTCGAGATATCCTGAGG
127 CAGAGTAATCCCCACT-GATTACGAATGCAAAATTTTAGCTTGAAGACGCCGAGATATCCTGAGA
* *
1529878 TATTTAGGAGTGTACCGTAGAAAATACCCTAGAT-GAGAAAATAATATTAGAACCACATTACTGT
191 TATTTAGGAGTGTACCGTAGAAAATACCCCAAATAG-GAAAATAATATTAGAACCACATTACTGT
1529942 GGGAAATAATTTTCCCATACTGCATTATTC
255 GGGAAATAATTTTCCCATACTGCATTATTC
1529972 CAGCCATTTT
Statistics
Matches: 257, Mismatches: 22, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
296 1 0.00
297 40 0.16
298 214 0.83
299 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (297 bp):
ATTTTATTTGTTTTCAAATTTAACACAGCAGAGAAATCTCCCGACCCCCCACATACAGAGAAAGA
ATGCAGAGCTGAAGACGCCAAGAAATCAGAGACCATTATCTACCTATTTTAACTAAAGACGCAGA
GTAATCCCCACTGATTACGAATGCAAAATTTTAGCTTGAAGACGCCGAGATATCCTGAGATATTT
AGGAGTGTACCGTAGAAAATACCCCAAATAGGAAAATAATATTAGAACCACATTACTGTGGGAAA
TAATTTTCCCATACTGCATTATTCTGGCATTTTTGCC
Found at i:1534113 original size:23 final size:23
Alignment explanation
Indices: 1534087--1534155 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
1534077 CACCACAGCT
*
1534087 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
* *
1534110 CGTAGAATTGCACCGGAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCA
*
1534133 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
1534156 TATAATAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.20
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:1534364 original size:100 final size:100
Alignment explanation
Indices: 1534171--1534378 Score: 332
Period size: 103 Copynumber: 2.1 Consensus size: 100
1534161 TAATGTCCAT
* *
1534171 AAGGACCACATATCATTCCTTAAGAATATACATATACTAGGGATCAAGTATGTGTCTCACCAGAC
1 AAGGACCACATATCATTCCTTAAGAATATACATATACCAAGGATCAAGTATGTGTCTCACCAGAC
*
1534236 TTCACACATGTTTCAAAGAATACATATATGTCCCG
66 TTCACACATGTTCCAAAGAATACATATATGTCCCG
*
1534271 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAG-A--ATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1534336 GACTTCACACATGTTCCAAAG-A-A-ATATATGTCCCG
63 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
1534371 AAGGACCA
1 AAGGACCA
1534379 TAGACCCTCG
Statistics
Matches: 101, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
100 44 0.44
101 2 0.02
102 1 0.01
103 54 0.53
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (100 bp):
AAGGACCACATATCATTCCTTAAGAATATACATATACCAAGGATCAAGTATGTGTCTCACCAGAC
TTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:1537689 original size:18 final size:18
Alignment explanation
Indices: 1537666--1537722 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
1537656 AAGACGATGA
1537666 CGGCATCATATATGGCTG
1 CGGCATCATATATGGCTG
*
1537684 CGGCATCATATATGGCTA
1 CGGCATCATATATGGCTG
*
1537702 CGGCATCATAAATGGCTG
1 CGGCATCATATATGGCTG
1537720 CGG
1 CGG
1537723 TAGCTGCTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (18 bp):
CGGCATCATATATGGCTG
Found at i:1542369 original size:188 final size:189
Alignment explanation
Indices: 1542052--1542422 Score: 735
Period size: 188 Copynumber: 2.0 Consensus size: 189
1542042 CCAAAAATAG
1542052 AAAGAATATTATAAACTACGTTGTTCGGACTCTTCATTTTTCATGAAGTGCTAGTATTTCACACT
1 AAAGAATATTATAAACTACGTTGTTCGGACTCTTCATTTTTCATGAAGTGCTAGTATTTCACACT
1542117 CGTGTCCCGCACTTGAATATGGAGGATATAACCTCCAAGGATCCTCCAAATACAAATAAAAACTT
66 CGTGTCCCGCACTTGAATATGGAGGATATAACCTCCAAGGATCCTCCAAATACAAATAAAAACTT
1542182 TGACAAATCT-ACCATACCCATGTTGGATACATACTCGTGTGTCCGAGTAACAAAACAA
131 TGACAAATCTAACCATACCCATGTTGGATACATACTCGTGTGTCCGAGTAACAAAACAA
1542240 AAAGAATATTATAAACTACGTTGTTCGGACTCTTCATTTTTCATGAAGTGCTAGTATTTCACACT
1 AAAGAATATTATAAACTACGTTGTTCGGACTCTTCATTTTTCATGAAGTGCTAGTATTTCACACT
1542305 CGTGTCCCGCACTTGAATATGGAGGATATAACCTCCAAGGATCCTCCAAATACAAATAAAAACTT
66 CGTGTCCCGCACTTGAATATGGAGGATATAACCTCCAAGGATCCTCCAAATACAAATAAAAACTT
1542370 TGACAAATCTAACCATACCCATGTTGGATACATACTCGTGTGTCCGAGTAACA
131 TGACAAATCTAACCATACCCATGTTGGATACATACTCGTGTGTCCGAGTAACA
1542423 TAGAGAAAAA
Statistics
Matches: 182, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
188 140 0.77
189 42 0.23
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (189 bp):
AAAGAATATTATAAACTACGTTGTTCGGACTCTTCATTTTTCATGAAGTGCTAGTATTTCACACT
CGTGTCCCGCACTTGAATATGGAGGATATAACCTCCAAGGATCCTCCAAATACAAATAAAAACTT
TGACAAATCTAACCATACCCATGTTGGATACATACTCGTGTGTCCGAGTAACAAAACAA
Found at i:1549822 original size:83 final size:82
Alignment explanation
Indices: 1549679--1549843 Score: 294
Period size: 83 Copynumber: 2.0 Consensus size: 82
1549669 TAACAATATC
1549679 ATTAAAACATTTAATACAAACACCGGCAATCATGTTAATGTGATTTTACTCGAATCCAAATTACA
1 ATTAAAACATTTAATACAAACACCGGCAATCATGTTAATGTGATTTTACTCGAATCCAAATTACA
*
1549744 GTCCTATTACATGCCAA
66 GTCCGATTACATGCCAA
* *
1549761 ATTACAAACATTTAATACAAGCATCGGCAATCATGTTAATGTGATTTTACTCGAATCCAAATTAC
1 ATTA-AAACATTTAATACAAACACCGGCAATCATGTTAATGTGATTTTACTCGAATCCAAATTAC
1549826 AGTCCGATTACATGCCAA
65 AGTCCGATTACATGCCAA
1549844 GCTACTAGCG
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
82 4 0.05
83 75 0.95
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (82 bp):
ATTAAAACATTTAATACAAACACCGGCAATCATGTTAATGTGATTTTACTCGAATCCAAATTACA
GTCCGATTACATGCCAA
Found at i:1553701 original size:17 final size:18
Alignment explanation
Indices: 1553679--1553712 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
1553669 TGTGTTCAGT
1553679 GCAAAA-AAAATGTAAAG
1 GCAAAATAAAATGTAAAG
1553696 GCAAAATAAAATGTAAA
1 GCAAAATAAAATGTAAA
1553713 TATAGAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.65, C:0.06, G:0.15, T:0.15
Consensus pattern (18 bp):
GCAAAATAAAATGTAAAG
Found at i:1555224 original size:10 final size:10
Alignment explanation
Indices: 1555211--1555236 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1555201 TTTTTCTTTT
1555211 TTTTTTCCTC
1 TTTTTTCCTC
1555221 TTTTTTCCTC
1 TTTTTTCCTC
1555231 TTTTTT
1 TTTTTT
1555237 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTTTCCTC
Found at i:1556783 original size:14 final size:14
Alignment explanation
Indices: 1556764--1556792 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1556754 TTCTTGAGCC
1556764 ATAATGACTTCAGT
1 ATAATGACTTCAGT
1556778 ATAATGACTTCAGT
1 ATAATGACTTCAGT
1556792 A
1 A
1556793 GGAAGACTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (14 bp):
ATAATGACTTCAGT
Found at i:1563070 original size:31 final size:31
Alignment explanation
Indices: 1563032--1563110 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 31
1563022 TCTTATCTTT
1563032 TTAAAATATTTTTAATTTTTTAATTTTA-AAA
1 TTAAAATATTTTTAA-TTTTTAATTTTATAAA
* *
1563063 TTAAAATAATTTTT-ATTTTTCATTTTATAAC
1 TTAAAAT-ATTTTTAATTTTTAATTTTATAAA
1563094 TTATAATATATTTTTAA
1 TTA-AA-ATATTTTTAA
1563111 ATTTAAAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
30 11 0.27
31 13 0.32
32 14 0.34
33 3 0.07
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (31 bp):
TTAAAATATTTTTAATTTTTAATTTTATAAA
Found at i:1563107 original size:32 final size:32
Alignment explanation
Indices: 1563032--1563109 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 32
1563022 TCTTATCTTT
*
1563032 TTAAAATAT-TTTTAATTTTTTAATTTTAAAA
1 TTAAAATATATTTTTATTTTTTAATTTTAAAA
* *
1563063 TTAAAATA-ATTTTTA-TTTTTCATTTTATAAC
1 TTAAAATATATTTTTATTTTTTAATTTTA-AAA
*
1563094 TTATAATATATTTTTA
1 TTAAAATATATTTTTA
1563110 AATTTAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 11 0.28
31 22 0.55
32 7 0.17
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (32 bp):
TTAAAATATATTTTTATTTTTTAATTTTAAAA
Found at i:1565305 original size:31 final size:30
Alignment explanation
Indices: 1565264--1565335 Score: 117
Period size: 31 Copynumber: 2.4 Consensus size: 30
1565254 TTTTTTATTA
1565264 ATAATTTATTTTAGCCCATTCTAAAATTTT
1 ATAATTTATTTTAGCCCATTCTAAAATTTT
*
1565294 ATAATTTTATTTTAGCTCATTCTAAAATTTT
1 ATAA-TTTATTTTAGCCCATTCTAAAATTTT
*
1565325 AAAATTTATTT
1 ATAATTTATTT
1565336 ATTTTATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
30 11 0.28
31 28 0.72
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (30 bp):
ATAATTTATTTTAGCCCATTCTAAAATTTT
Found at i:1567999 original size:32 final size:32
Alignment explanation
Indices: 1567963--1568023 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
1567953 ATAATTACAT
1567963 CATCTGAGTTCATAAAGTAATTCAAACTCAAA
1 CATCTGAGTTCATAAAGTAATTCAAACTCAAA
1567995 CATCTGAGTTCATAAAGTAATTCAAACTC
1 CATCTGAGTTCATAAAGTAATTCAAACTC
1568024 GGACATGGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (32 bp):
CATCTGAGTTCATAAAGTAATTCAAACTCAAA
Found at i:1573840 original size:33 final size:33
Alignment explanation
Indices: 1573798--1573860 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
1573788 AAGTTGACAA
1573798 ATTGGAAATTTCATATTGGTTGGTGGCCAACTT
1 ATTGGAAATTTCATATTGGTTGGTGGCCAACTT
*
1573831 ATTGGAAATTTCATCTTGGTTGGTGGCCAA
1 ATTGGAAATTTCATATTGGTTGGTGGCCAA
1573861 ACTTTGAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (33 bp):
ATTGGAAATTTCATATTGGTTGGTGGCCAACTT
Found at i:1575430 original size:12 final size:12
Alignment explanation
Indices: 1575413--1575438 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1575403 GCAATGACAA
1575413 TGCCTGTAAAAC
1 TGCCTGTAAAAC
1575425 TGCCTGTAAAAC
1 TGCCTGTAAAAC
1575437 TG
1 TG
1575439 TTGGGATAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (12 bp):
TGCCTGTAAAAC
Found at i:1579684 original size:60 final size:60
Alignment explanation
Indices: 1579620--1579739 Score: 141
Period size: 60 Copynumber: 2.0 Consensus size: 60
1579610 AATTGATCCC
* * * *
1579620 AATTATAGGTTATTATTTTATTCAGTCATTTAATTATTAAAAAATAAAAAATGATCATCT
1 AATTATAAGATATTATTTTATTAAGTCATCTAATTATTAAAAAATAAAAAATGATCATCT
* * * * * * *
1579680 AATTATAAGATGTTATTTTGTTAAGTCATCTGATTATTAAAGATTACAAAGTGATCATCT
1 AATTATAAGATATTATTTTATTAAGTCATCTAATTATTAAAAAATAAAAAATGATCATCT
1579740 GACTATTCAT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
60 49 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (60 bp):
AATTATAAGATATTATTTTATTAAGTCATCTAATTATTAAAAAATAAAAAATGATCATCT
Found at i:1581222 original size:28 final size:28
Alignment explanation
Indices: 1581162--1581222 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
1581152 ATGAATCAGT
* *
1581162 TAATTAAATTTATTGAATTAAAAATTAA
1 TAATTAAATTAATTGAATTAAAAAGTAA
* *
1581190 TAATTCAATTAATTGAATTAGTAAAGTAA
1 TAATTAAATTAATTGAATTA-AAAAGTAA
1581219 -AATT
1 TAATT
1581223 GAAAATTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 22 0.79
29 6 0.21
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.41
Consensus pattern (28 bp):
TAATTAAATTAATTGAATTAAAAAGTAA
Found at i:1581634 original size:2 final size:2
Alignment explanation
Indices: 1581627--1581656 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1581617 ATCTTAATTG
1581627 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1581657 TAAACATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1583849 original size:24 final size:24
Alignment explanation
Indices: 1583817--1583863 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
1583807 TTCAGAAATG
1583817 ATTGTTTCAAATTACACTTAGAAA
1 ATTGTTTCAAATTACACTTAGAAA
1583841 ATTGTTTCAAATTACACTTAGAA
1 ATTGTTTCAAATTACACTTAGAA
1583864 CTCCATTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (24 bp):
ATTGTTTCAAATTACACTTAGAAA
Found at i:1583953 original size:17 final size:17
Alignment explanation
Indices: 1583931--1583980 Score: 100
Period size: 17 Copynumber: 2.9 Consensus size: 17
1583921 TGCATACACG
1583931 ATGGTAATGGTTCTCTT
1 ATGGTAATGGTTCTCTT
1583948 ATGGTAATGGTTCTCTT
1 ATGGTAATGGTTCTCTT
1583965 ATGGTAATGGTTCTCT
1 ATGGTAATGGTTCTCT
1583981 ATTGCTTGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.18, C:0.12, G:0.24, T:0.46
Consensus pattern (17 bp):
ATGGTAATGGTTCTCTT
Found at i:1585949 original size:16 final size:16
Alignment explanation
Indices: 1585930--1585967 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
1585920 GAGATGAGTC
1585930 GAGCTCGAGGATTGTT
1 GAGCTCGAGGATTGTT
1585946 GAGCTCGAGGATTGTT
1 GAGCTCGAGGATTGTT
1585962 GAGCTC
1 GAGCTC
1585968 AACTCAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.18, C:0.16, G:0.37, T:0.29
Consensus pattern (16 bp):
GAGCTCGAGGATTGTT
Found at i:1605366 original size:25 final size:24
Alignment explanation
Indices: 1605327--1605375 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
1605317 CTTGCATGGA
* * *
1605327 ACACCATGTGGCACCCATCCAACTC
1 ACACCATGCGACA-CCACCCAACTC
1605352 ACACCATGCGACACCACCCAACTC
1 ACACCATGCGACACCACCCAACTC
1605376 GCATTGTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.31, C:0.47, G:0.10, T:0.12
Consensus pattern (24 bp):
ACACCATGCGACACCACCCAACTC
Found at i:1615688 original size:25 final size:25
Alignment explanation
Indices: 1615645--1615692 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
1615635 TTGTATTTTC
*
1615645 TTTTTTAAAAAATATATAATTTTAT
1 TTTTTTAAAAAATAAATAATTTTAT
**
1615670 TTTTTTAAAATTTAAATAATTTT
1 TTTTTTAAAAAATAAATAATTTT
1615693 TTTAAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTTTTAAAAAATAAATAATTTTAT
Found at i:1616844 original size:320 final size:321
Alignment explanation
Indices: 1616295--1616934 Score: 1124
Period size: 320 Copynumber: 2.0 Consensus size: 321
1616285 TTTACAGTGA
* *
1616295 GTCATCTTTAATATACAATTAAAAAAAGTGTTATCGATTTTGTTATTATTTAAATAATAAAATCG
1 GTCATCCTTAATATACAATTAAAAAAAGTGTTACCGATTTTGTTATTATTTAAATAATAAAATCG
* *
1616360 ATAAAAAAATTACTTAAAATATTATTATTTCTACCTAAAACATCAATGTTTTTTAATATTTTCGG
66 ATAAAAAAATTACTTAAAATATTATTATTTCTACCTAAAACATCAATATTTTTTAATATTTTCAG
*
1616425 TAAAGTGTCCAATAATAACAAAACCGATAGCTCTTTACCGGTTTTGTTGTAAAACGCACAATAAT
131 TAAAATGTCCAATAATAACAAAACCGATAGCTCTTTACCGGTTTTGTTGTAAAACGCACAATAAT
* * *
1616490 AACAAAATCGATAAAAATAATAATATTTTCGTTAAATTTTTATCGATTTTATTATTTAAATAATA
196 AAAAAAATCAATAAAAATAATAATATTTTCGTTAAATTTTTATCAATTTTATTATTTAAATAATA
*
1616555 ATAAAATCAGTAATATTTTTTATCTGTATATTAAAACTGACGCACATAATTATTTCCCGTAT
261 ATAAAATCAGTAATA-TTTTTATATGTATATTAAAACTGACGCACATAATTATTTCCCGTAT
1616617 GTCATCCTTAATATACAATT-AAAAAAGTGTTACCGATTTTGTTATTATTTAAATAATAAAATCG
1 GTCATCCTTAATATACAATTAAAAAAAGTGTTACCGATTTTGTTATTATTTAAATAATAAAATCG
1616681 AT-AAAAAATTACTTAAAATATTATTATTTCTACCTAAAACATCAATATTTTTTAATA-TTTCTA
66 ATAAAAAAATTACTTAAAATATTATTATTTCTACCTAAAACATCAATATTTTTTAATATTTTC-A
* *
1616744 GTAAAATGTCCAATAATAACAAAACCGGTAGTTCTTTACCGGTTTTGTTGTAAAACGCACAATAA
130 GTAAAATGTCCAATAATAACAAAACCGATAGCTCTTTACCGGTTTTGTTGTAAAACGCACAATAA
*
1616809 TAAAAAAATTAATAAAAATAATAATATTTTCGTTAAATTTTTATCAATTTTATTATTTAAATAAT
195 TAAAAAAATCAATAAAAATAATAATATTTTCGTTAAATTTTTATCAATTTTATTATTTAAATAAT
*
1616874 AATAAAATCAGTAATATTTTTATATGTATATTAAAACTGACGCACGTAATTATTTCCCGTA
260 AATAAAATCAGTAATATTTTTATATGTATATTAAAACTGACGCACATAATTATTTCCCGTA
1616935 ATTTTTTAAG
Statistics
Matches: 304, Mismatches: 13, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
319 47 0.15
320 193 0.63
321 45 0.15
322 19 0.06
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (321 bp):
GTCATCCTTAATATACAATTAAAAAAAGTGTTACCGATTTTGTTATTATTTAAATAATAAAATCG
ATAAAAAAATTACTTAAAATATTATTATTTCTACCTAAAACATCAATATTTTTTAATATTTTCAG
TAAAATGTCCAATAATAACAAAACCGATAGCTCTTTACCGGTTTTGTTGTAAAACGCACAATAAT
AAAAAAATCAATAAAAATAATAATATTTTCGTTAAATTTTTATCAATTTTATTATTTAAATAATA
ATAAAATCAGTAATATTTTTATATGTATATTAAAACTGACGCACATAATTATTTCCCGTAT
Found at i:1619857 original size:17 final size:17
Alignment explanation
Indices: 1619830--1619866 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
1619820 AAACCGGTTT
1619830 GACCGGTTGACCTGACCC
1 GACCGGTTGACC-GACCC
1619848 GACC-GTTGACCGACCC
1 GACCGGTTGACCGACCC
1619864 GAC
1 GAC
1619867 TTTTGACACG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.42
17 7 0.37
18 4 0.21
ACGTcount: A:0.19, C:0.41, G:0.27, T:0.14
Consensus pattern (17 bp):
GACCGGTTGACCGACCC
Found at i:1619880 original size:17 final size:16
Alignment explanation
Indices: 1619835--1619896 Score: 70
Period size: 17 Copynumber: 3.7 Consensus size: 16
1619825 GGTTTGACCG
*
1619835 GTTGACCTGACCCGACC
1 GTTGACC-GACCCGACT
1619852 GTTGACCGACCCGACT
1 GTTGACCGACCCGACT
* *
1619868 TTTGACACGACCCAACT
1 GTTGAC-CGACCCGACT
1619885 GTTGACCCGACC
1 GTTGA-CCGACC
1619897 GTTGACCGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
16 13 0.33
17 25 0.64
18 1 0.03
ACGTcount: A:0.21, C:0.39, G:0.21, T:0.19
Consensus pattern (16 bp):
GTTGACCGACCCGACT
Found at i:1635923 original size:21 final size:20
Alignment explanation
Indices: 1635837--1635994 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 20
1635827 AAATGACCAA
**
1635837 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
1635856 AAAAATCGCAACGCGATCAC
1 CAAAATCGCAACGCGATTTT
* ** *
1635876 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
1635896 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
1635917 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
1635938 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* * *
1635958 CCAGAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
1635979 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
1635995 ACACATAAAT
Statistics
Matches: 103, Mismatches: 30, Indels: 11
0.72 0.21 0.08
Matches are distributed among these distances:
19 16 0.16
20 41 0.40
21 46 0.45
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:1636056 original size:20 final size:20
Alignment explanation
Indices: 1635962--1636154 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
1635952 GATTTTCCAG
* ** *
1635962 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
1635982 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
1636002 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
1636022 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
1636042 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
1636062 AATCGTAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
1636082 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* * *
1636102 AATGGCAACGAC-AATACGTAA
1 AATCGCAACG-CGTATCCGT-A
*
1636123 AATTGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
1636143 AATCGCAACGCG
1 AATCGCAACGCG
1636155 ATTTTTAAAG
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 1 0.01
20 127 0.87
21 18 0.12
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:1636563 original size:14 final size:14
Alignment explanation
Indices: 1636544--1636600 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
1636534 TTTCATTTCG
1636544 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
1636558 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
*
1636577 CGTTGCTATTCTCT
1 CGTTGCGATTCTCT
1636591 CGTTGCGATT
1 CGTTGCGATT
1636601 TTCAAGTTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 19 0.56
16 3 0.09
17 3 0.09
19 9 0.26
ACGTcount: A:0.09, C:0.25, G:0.21, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:1636573 original size:33 final size:33
Alignment explanation
Indices: 1636534--1636604 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
1636524 TTCACTTAGA
1636534 TTTCATTTCGCGTTGCGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTGCGATTCTCTCGTTGCGAT
*
1636567 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTGCGATTCTCTCGTTGCGAT
1636600 TTTCA
1 TTTCA
1636605 AGTTAGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.10, C:0.24, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTGCGATTCTCTCGTTGCGAT
Found at i:1636582 original size:19 final size:18
Alignment explanation
Indices: 1636532--1636582 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 18
1636522 ATTTCACTTA
1636532 GATTTCATTTCGCGTTGC
1 GATTTCATTTCGCGTTGC
*
1636550 GA-TTC---TCTCGTTGC
1 GATTTCATTTCGCGTTGC
1636564 GATTTTCATTTCGCGTTGC
1 GA-TTTCATTTCGCGTTGC
1636583 TATTCTCTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
14 10 0.38
16 3 0.12
17 3 0.12
18 2 0.08
19 8 0.31
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.45
Consensus pattern (18 bp):
GATTTCATTTCGCGTTGC
Found at i:1636710 original size:21 final size:21
Alignment explanation
Indices: 1636684--1636760 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
1636674 TGCATAAGAG
1636684 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
* **
1636705 TCGCAACGTGA-AAATGACTA
1 TCGCAACGAGAGAAATGAAAA
*
1636725 TCTGCAACGAGAAAAATGAAAA
1 TC-GCAACGAGAGAAATGAAAA
1636747 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
1636761 TCGCAACGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
20 9 0.19
21 29 0.62
22 9 0.19
ACGTcount: A:0.48, C:0.17, G:0.22, T:0.13
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGAAAA
Found at i:1636764 original size:14 final size:14
Alignment explanation
Indices: 1636745--1636801 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
1636735 GAAAAATGAA
1636745 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
1636759 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
1636778 AATCGCAACGAGAG
1 AATCGCAACGAGAG
1636792 AATCGCAACG
1 AATCGCAACG
1636802 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:1636776 original size:33 final size:33
Alignment explanation
Indices: 1636738--1636817 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
1636728 GCAACGAGAA
1636738 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1636771 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
**
1636804 AAACCAAAATCGCA
1 AAATGAAAATCGCA
1636818 TTGCGATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.47, C:0.23, G:0.21, T:0.09
Consensus pattern (33 bp):
AAATGAAAATCGCAACGAGAGAATCGCAACGCG
Found at i:1636869 original size:21 final size:21
Alignment explanation
Indices: 1636843--1636907 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
1636833 CGCGTTGCGA
1636843 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
1636864 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
1636884 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
1636905 TTC
1 TTC
1636908 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:1636904 original size:20 final size:20
Alignment explanation
Indices: 1636842--1636905 Score: 92
Period size: 20 Copynumber: 3.1 Consensus size: 20
1636832 TCGCGTTGCG
1636842 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
***
1636862 ATTTCTCTCGTTGCGACAGTC
1 A-TTCTCTCGTTGCGATTTTC
1636883 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
1636903 ATT
1 ATT
1636906 TCAACCAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 20 0.54
21 17 0.46
ACGTcount: A:0.12, C:0.25, G:0.16, T:0.47
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:1638898 original size:52 final size:53
Alignment explanation
Indices: 1638818--1638927 Score: 159
Period size: 52 Copynumber: 2.1 Consensus size: 53
1638808 TAGTTTACTT
* * * **
1638818 TCGCAACACGAAACTTAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAA
1 TCGCAACACGAAACTCAAAATCGCAACGACAAAATCGCAACGCGAAACCAAAA
*
1638871 TCGCAACGCGAAAC-CAAAATCGCAACGACAAAATCGCAACGCGAAACCAAAA
1 TCGCAACACGAAACTCAAAATCGCAACGACAAAATCGCAACGCGAAACCAAAA
1638923 TCGCA
1 TCGCA
1638928 TTGCGATTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 38 0.75
53 13 0.25
ACGTcount: A:0.46, C:0.27, G:0.17, T:0.09
Consensus pattern (53 bp):
TCGCAACACGAAACTCAAAATCGCAACGACAAAATCGCAACGCGAAACCAAAA
Found at i:1638902 original size:14 final size:14
Alignment explanation
Indices: 1638885--1638911 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1638875 AACGCGAAAC
1638885 CAAAATCGCAACGA
1 CAAAATCGCAACGA
1638899 CAAAATCGCAACG
1 CAAAATCGCAACG
1638912 CGAAACCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.30, G:0.15, T:0.07
Consensus pattern (14 bp):
CAAAATCGCAACGA
Found at i:1638933 original size:19 final size:19
Alignment explanation
Indices: 1638850--1638927 Score: 103
Period size: 19 Copynumber: 4.4 Consensus size: 19
1638840 GCAACGAGAG
**
1638850 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAACCAA
1638869 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACCAA
1638888 AATCGCAA--CG--A-CAA
1 AATCGCAACGCGAAACCAA
1638902 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACCAA
1638921 AATCGCA
1 AATCGCA
1638928 TTGCGATTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
14 11 0.21
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 35 0.67
ACGTcount: A:0.47, C:0.28, G:0.17, T:0.08
Consensus pattern (19 bp):
AATCGCAACGCGAAACCAA
Found at i:1638945 original size:19 final size:19
Alignment explanation
Indices: 1638923--1639095 Score: 132
Period size: 19 Copynumber: 9.6 Consensus size: 19
1638913 GAAACCAAAA
*
1638923 TCGCATTGCGATTTTGATT
1 TCGCGTTGCGATTTTGATT
*
1638942 TCGCGTTGCGA---T--TC
1 TCGCGTTGCGATTTTGATT
* *
1638956 TCTCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTGATT
* *
1638975 TCGCATTGCGATTCTG---
1 TCGCGTTGCGATTTTGATT
* *
1638991 T--CATTGCGATTTTCATT
1 TCGCGTTGCGATTTTGATT
*
1639008 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTGATT
*
1639027 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTGATT
* * *
1639046 TCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTGATT
*
1639065 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTGA-TT
*
1639085 TCGTGTTGCGA
1 TCGCGTTGCGA
1639096 AAGTAAACTA
Statistics
Matches: 122, Mismatches: 21, Indels: 21
0.74 0.13 0.13
Matches are distributed among these distances:
14 22 0.18
16 2 0.02
17 2 0.02
19 84 0.69
20 12 0.10
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTGATT
Found at i:1638970 original size:33 final size:33
Alignment explanation
Indices: 1638928--1639061 Score: 142
Period size: 33 Copynumber: 3.9 Consensus size: 33
1638918 CAAAATCGCA
1638928 TTGCGATTTTGATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTGATTTCGCGTTGCGATTCTCTCG
* * * *
1638961 TTGCGATTTTTATTTCGCATTGCGATTCTGTCA
1 TTGCGATTTTGATTTCGCGTTGCGATTCTCTCG
* * *
1638994 TTGCGATTTTCATTTCGCGTTGCGATTTTGGTTTCGCG
1 TTGCGATTTTGATTTCGCGTTGCGA---T--TCTCTCG
* *
1639032 TTGCGATTTTGGTTTCTCGTTGCGATTCTC
1 TTGCGATTTTGATTTCGCGTTGCGATTCTC
1639062 ATTTCGCGTT
Statistics
Matches: 82, Mismatches: 14, Indels: 10
0.77 0.13 0.09
Matches are distributed among these distances:
33 55 0.67
35 1 0.01
36 1 0.01
38 25 0.30
ACGTcount: A:0.10, C:0.19, G:0.23, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTGATTTCGCGTTGCGATTCTCTCG
Found at i:1639053 original size:38 final size:38
Alignment explanation
Indices: 1638923--1639095 Score: 141
Period size: 33 Copynumber: 4.8 Consensus size: 38
1638913 GAAACCAAAA
* *
1638923 TCGCATTGCGATTTTGATTTCGCGTTGCGATTCTC---
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* * *
1638958 T--CGTTGCGATTTTTATTTCGCATTGCGA-T-TC-TG
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* * **
1638991 T--CATTGCGATTTTCATTTCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
** *
1639027 TCGCGTTGCGATTTTGGTTTCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* *
1639065 TCGCGTTGCGATTTTAAGTTTCGTGTTGCGA
1 TCGCGTTGCGATTTTCA-TTTCGCGTTGCGA
1639096 AAGTAAACTA
Statistics
Matches: 111, Mismatches: 19, Indels: 12
0.78 0.13 0.08
Matches are distributed among these distances:
31 2 0.02
32 1 0.01
33 49 0.44
34 1 0.01
35 2 0.02
36 2 0.02
38 43 0.39
39 11 0.10
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
Found at i:1639588 original size:45 final size:45
Alignment explanation
Indices: 1639494--1639579 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
1639484 GACTCGCCTG
* * * * *
1639494 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTCCTA
1 TCATTCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCCACTCCTA
* *
1639539 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACT
1 TCATTCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCCACT
1639580 GTCATCATTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.21, C:0.40, G:0.16, T:0.23
Consensus pattern (45 bp):
TCATTCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCCACTCCTA
Found at i:1641041 original size:14 final size:14
Alignment explanation
Indices: 1641022--1641057 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
1641012 ATTGTTTAAT
1641022 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
1641036 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
1641050 TGATTTGT
1 TGATTTGT
1641058 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:1641254 original size:20 final size:19
Alignment explanation
Indices: 1641164--1641262 Score: 127
Period size: 19 Copynumber: 5.4 Consensus size: 19
1641154 AAAAATGACT
1641164 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
*
1641184 ATCGTAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1641203 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
1641217 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
1641236 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
1641256 ATCGCAA
1 ATCGCAA
1641263 CGAGAGAATC
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 28 0.41
20 25 0.36
ACGTcount: A:0.45, C:0.16, G:0.23, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:1641294 original size:53 final size:53
Alignment explanation
Indices: 1641164--1641281 Score: 211
Period size: 53 Copynumber: 2.2 Consensus size: 53
1641154 AAAAATGACT
*
1641164 ATCGCAATGCGGAAATGAAAATCGTAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1641217 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1641270 ATCGCAATGCGA
1 ATCGCAATGCGA
1641282 TTTTCATTTC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
52 18 0.29
53 45 0.71
ACGTcount: A:0.44, C:0.17, G:0.25, T:0.14
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:1641299 original size:19 final size:19
Alignment explanation
Indices: 1641271--1641451 Score: 222
Period size: 19 Copynumber: 9.9 Consensus size: 19
1641261 AACGAGAGAA
*
1641271 TCGCAATGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
1641290 TCGCATTGCGA-TTTCATT
1 TCGCATTGCGATTTTCATT
*
1641308 TCCGCATTGCGA--TTC-TC
1 T-CGCATTGCGATTTTCATT
1641325 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
1641342 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
1641361 TCCGCATTGCGA--TTC-TC
1 T-CGCATTGCGATTTTCATT
*
1641378 TCG--TTGTGATTTTCATT
1 TCGCATTGCGATTTTCATT
1641395 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
1641414 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
1641433 TCCGCATTGCGATTTTCAT
1 T-CGCATTGCGATTTTCAT
1641452 GTTGGGATTT
Statistics
Matches: 142, Mismatches: 7, Indels: 25
0.82 0.04 0.14
Matches are distributed among these distances:
14 11 0.08
16 10 0.07
17 12 0.08
18 14 0.10
19 68 0.48
20 27 0.19
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:1641380 original size:53 final size:53
Alignment explanation
Indices: 1641277--1641493 Score: 288
Period size: 53 Copynumber: 4.1 Consensus size: 53
1641267 AGAATCGCAA
1641277 TGCGATTTTCATTTCGCATTGCGA-TTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1641329 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
* *
1641382 TGTGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTTTCATTTCCGCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGA--TTC-TCT-CG--T
* *
1641440 TGCGATTTTCA--T-G--TTGGGATTTTCA-TTCCGCATTGCAATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1641487 TGCGATT
1 TGCGATT
1641494 GTAATTTCCG
Statistics
Matches: 151, Mismatches: 6, Indels: 21
0.85 0.03 0.12
Matches are distributed among these distances:
47 8 0.05
49 2 0.01
50 2 0.01
51 3 0.02
52 36 0.24
53 80 0.53
54 3 0.02
55 3 0.02
56 3 0.02
58 11 0.07
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.46
Consensus pattern (53 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
Found at i:1641405 original size:33 final size:34
Alignment explanation
Indices: 1641347--1641512 Score: 176
Period size: 33 Copynumber: 4.8 Consensus size: 34
1641337 TCATTTCGCA
1641347 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
* *
1641381 TTGTGATTTTCATTT-CGCATTGCGATTTTCATTTCG
1 TTGCGATTTTCATTTCCGCATTGCGA--TTC-TCTCG
*
1641417 CATTGCGATTTTCATTTCCGCATTGCGATTTTCAT-G
1 --TTGCGATTTTCATTTCCGCATTGCGATTCTC-TCG
* *
1641453 TTGGGATTTTCA-TTCCGCATTGCAATTCTCTCG
1 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
* * **
1641486 TTGCGATTGTAATTTCCGTGTTGCGAT
1 TTGCGATTTTCATTTCCGCATTGCGAT
1641513 AGTCAAATGC
Statistics
Matches: 109, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
32 1 0.01
33 36 0.33
34 36 0.33
35 3 0.03
36 6 0.06
37 3 0.03
38 14 0.13
39 10 0.09
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (34 bp):
TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
Found at i:1641407 original size:72 final size:72
Alignment explanation
Indices: 1641271--1641475 Score: 258
Period size: 72 Copynumber: 2.9 Consensus size: 72
1641261 AACGAGAGAA
* * * * * *
1641271 TCGCAATGCGATTTTCATTT-CGCATTGCGATT-TCAT-TTCCGCA-TTGCGATTCTCTCGTTGC
1 TCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCATGTT-GGGATTTTC-ATTC-CGCATTGC
1641332 GATTTTCATT
63 GATTTTCATT
* *
1641342 TCGCATTGCGATTTTCATTTCCGCATTGCGATTCTC-TCGTTGTGATTTTCATTTCGCATTGCGA
1 TCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCAT-GTTGGGATTTTCATTCCGCATTGCGA
1641406 TTTTCATT
65 TTTTCATT
*
1641414 TCGCATTGCGATTTTCATTTCCGCATTGCGATTTTCATGTTGGGATTTTCATTCCGCATTGC
1 TCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCATGTTGGGATTTTCATTCCGCATTGC
1641476 AATTCTCTCG
Statistics
Matches: 117, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
71 19 0.16
72 86 0.74
73 7 0.06
74 5 0.04
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.45
Consensus pattern (72 bp):
TCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCATGTTGGGATTTTCATTCCGCATTGCGAT
TTTCATT
Found at i:1641501 original size:105 final size:103
Alignment explanation
Indices: 1641277--1641493 Score: 282
Period size: 105 Copynumber: 2.1 Consensus size: 103
1641267 AGAATCGCAA
1641277 TGCGATTTTCATTTCGCATTGCGATTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TGCGATTTTCATTTCGCATTGCGATTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCA-T
*
1641342 TCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
65 TCG-ATTGCGATTTTCATTTCCGCATTGCAATTCTCTCGT
* *
1641382 TGTGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTTTCATTTCCGCATTGCGAT
1 TGCGATTTTCATTTCGCATTGCGA-TTTCATTTCCGCATTGCGA--TTC-TCT-CG--TTGCGAT
*
1641446 TTTCA-T-G-TTGGGATTTTCA-TTCCGCATTGCAATTCTCTCGT
59 TTTCATTCGATTGCGATTTTCATTTCCGCATTGCAATTCTCTCGT
1641487 TGCGATT
1 TGCGATT
1641494 GTAATTTCCG
Statistics
Matches: 100, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
105 60 0.60
106 19 0.19
107 3 0.03
108 3 0.03
109 3 0.03
111 12 0.12
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.46
Consensus pattern (103 bp):
TGCGATTTTCATTTCGCATTGCGATTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCATT
CGATTGCGATTTTCATTTCCGCATTGCAATTCTCTCGT
Found at i:1643793 original size:12 final size:12
Alignment explanation
Indices: 1643776--1643800 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1643766 TCTTCGGGGA
1643776 CTTTTTCTTCTT
1 CTTTTTCTTCTT
1643788 CTTTTTCTTCTT
1 CTTTTTCTTCTT
1643800 C
1 C
1643801 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:1644009 original size:24 final size:24
Alignment explanation
Indices: 1643975--1644021 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1643965 CTGAAACATC
1643975 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
1643999 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
1644022 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:1644739 original size:20 final size:20
Alignment explanation
Indices: 1644714--1644919 Score: 254
Period size: 20 Copynumber: 10.3 Consensus size: 20
1644704 AAATTTCAGT
* * *
1644714 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
1644734 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
1644754 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
1644774 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
*
1644794 GTTGCGATTTATGGATACGC
1 GTTGCGATTTACGGATACGC
*
1644814 GTTGCGATTTACGGATATGC
1 GTTGCGATTTACGGATACGC
*
1644834 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
1644854 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
1644874 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
*
1644894 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATACGC
1644914 GTTGCG
1 GTTGCG
1644920 TACTACTTCT
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
19 3 0.02
20 161 0.97
21 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:1645463 original size:20 final size:20
Alignment explanation
Indices: 1645435--1645663 Score: 210
Period size: 20 Copynumber: 11.4 Consensus size: 20
1645425 AAATTTCAGT
* *
1645435 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
1645455 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
*
1645475 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
1645495 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
* *
1645515 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
*
1645535 GTTGCGATTTACGGATATGT-
1 GTTGCGATTTACGGAT-TCTC
* * *
1645555 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
1645575 GTTGCTATTTACGGATACAC
1 GTTGCGATTTACGGATTCTC
* * *
1645595 GTTGCGGTTTACGGATACAC
1 GTTGCGATTTACGGATTCTC
* * *
1645615 ATTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCTC
* ** *
1645635 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCTC
1645655 GTTGCGATT
1 GTTGCGATT
1645664 CTGGAAAATC
Statistics
Matches: 173, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
20 172 0.99
21 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCTC
Found at i:1645640 original size:721 final size:721
Alignment explanation
Indices: 1644199--1645625 Score: 2728
Period size: 721 Copynumber: 2.0 Consensus size: 721
1644189 GACCCAACAA
1644199 TACTACTTCTAGGTTCAACAACATACAATGTAACATCATCTTGTGAAACACTAATGTAAGCAATG
1 TACTACTTCTAGGTTCAACAACATACAATGTAACATCATCTTGTGAAACACTAATGTAAGCAATG
1644264 AATCGTTCAACATCTTCATTGTCGGTTAACAAATAAACTTTACCATTTCTATGATAAGATAGCCT
66 AATCGTTCAACATCTTCATTGTCGGTTAACAAATAAACTTTACCATTTCTATGATAAGATAGCCT
*
1644329 AAATCCACTTAGGGGCTCTAAATTCAATTTCTTTGAAACACGTAGCATTAGAGTTTCATAAGTTA
131 AAATCCAATTAGGGGCTCTAAATTCAATTTCTTTGAAACACGTAGCATTAGAGTTTCATAAGTTA
1644394 ACTTTTGTAAAGACAATTTTAGTTGAAGATTCATGGGTAAAGGCATATATTGTAAAACACCATGA
196 ACTTTTGTAAAGACAATTTTAGTTGAAGATTCATGGGTAAAGGCATATATTGTAAAACACCATGA
1644459 ACATTATCCCATGACCCTCCAAAACACAAATCTATCCAAACATGATCAACATTAGATGATTTCAT
261 ACATTATCCCATGACCCTCCAAAACACAAATCTATCCAAACATGATCAACATTAGATGATTTCAT
*
1644524 GGTTGTAAATTAATTTACTAAACATACGAGCTGCGAAACTAAAACCTGTTGCCGGATTGGGAAGG
326 GGTTGTAAATTAATTTACTAAACAGACGAGCTGCGAAACTAAAACCTGTTGCCGGATTGGGAAGG
*
1644589 ATGTCGTTGGATATAGGAACGGATGTCGCCGGAGAGAGTGATAGATGGAGATGGAATGAGTTGCG
391 ATGTCGTTGGATATAGGAACGGATGTCGCCAGAGAGAGTGATAGATGGAGATGGAATGAGTTGCG
1644654 ATTTAGGGATTTAGTTTATGATTTGCTGCTGTTGCGTAGTTATATACCCAAAATTTCAGTGTTGC
456 ATTTAGGGATTTAGTTTATGATTTGCTGCTGTTGCGTAGTTATATACCCAAAATTTCAGTGTTGC
1644719 GATTTACAGATTCTCGTTGCGATTTACGGATTATCGTTGCGATTTACAGATTCTCGTTGCGATTT
521 GATTTACAGATTCTCGTTGCGATTTACGGATTATCGTTGCGATTTACAGATTCTCGTTGCGATTT
*
1644784 ACGGATTATCGTTGCGATTTATGGATACGCGTTGCGATTTACGGATATGCATTGCGATTTACGGA
586 ACGGATTATCGTTGCGATTTACGGATACGCGTTGCGATTTACGGATATGCATTGCGATTTACGGA
* * *
1644849 TACGCATTGCGATTTACGGATACGCGTTGCGATTTACGGATACACGTTGCGGTTTACGGATACGC
651 TACGCATTGCGATTTACGGATACACGTTGCGATTTACGGATACACATTGCGATTTACGGATACGC
1644914 GTTGCG
716 GTTGCG
1644920 TACTACTTCTAGGTTCAACAACATACAATGTAACATCATCTTGTGAAACACTAATGTAAGCAATG
1 TACTACTTCTAGGTTCAACAACATACAATGTAACATCATCTTGTGAAACACTAATGTAAGCAATG
*
1644985 AATCGTTCAACATCTTCATTGTCGGTTAACAAATAAACTTTACCATTTCTCTGATAAGATAGCCT
66 AATCGTTCAACATCTTCATTGTCGGTTAACAAATAAACTTTACCATTTCTATGATAAGATAGCCT
1645050 AAATCCAATTAGGGGCTCTAAATTCAATTTCTTTGAAACACGTAGCATTAGAGTTTCATAAGTTA
131 AAATCCAATTAGGGGCTCTAAATTCAATTTCTTTGAAACACGTAGCATTAGAGTTTCATAAGTTA
1645115 ACTTTTGTAAAGACAATTTTAGTTGAAGATTCATGGGTAAAGGCATATATTGTAAAACACCATGA
196 ACTTTTGTAAAGACAATTTTAGTTGAAGATTCATGGGTAAAGGCATATATTGTAAAACACCATGA
*
1645180 ACATTCTCCCATGACCCTCCAAAACACAAATCTATCCAAACATGATCAACATTAGATGATTTCAT
261 ACATTATCCCATGACCCTCCAAAACACAAATCTATCCAAACATGATCAACATTAGATGATTTCAT
1645245 GGTTGTAAATTAATTTACTAAACAGACGAGCTGCGAAACTAAAACCTGTTGCCGGATTGGGAAGG
326 GGTTGTAAATTAATTTACTAAACAGACGAGCTGCGAAACTAAAACCTGTTGCCGGATTGGGAAGG
1645310 ATGTCGTTGGATATAGGAACGGATGTCGCCAGAGAGAGTGATAGATGGAGATGGAATGAGTTGCG
391 ATGTCGTTGGATATAGGAACGGATGTCGCCAGAGAGAGTGATAGATGGAGATGGAATGAGTTGCG
*
1645375 ATTTAGGGATTTAGTTTATGATTTGCTGCTGTTGCGTAGTTATATACCCAAAATTTCAGTGTTGT
456 ATTTAGGGATTTAGTTTATGATTTGCTGCTGTTGCGTAGTTATATACCCAAAATTTCAGTGTTGC
1645440 GATTTACAGATTCTCGTTGCGATTTACGGATTATCGTTGCGATTTACAGATTCTCGTTGCGATTT
521 GATTTACAGATTCTCGTTGCGATTTACGGATTATCGTTGCGATTTACAGATTCTCGTTGCGATTT
*
1645505 ACGGATTATCGTTGCGATTTACGGATACGCGTTGCGATTTACGGATATGTATTGCGATTTACGGA
586 ACGGATTATCGTTGCGATTTACGGATACGCGTTGCGATTTACGGATATGCATTGCGATTTACGGA
* * *
1645570 TACGCGTTGCTATTTACGGATACACGTTGCGGTTTACGGATACACATTGCGATTTA
651 TACGCATTGCGATTTACGGATACACGTTGCGATTTACGGATACACATTGCGATTTA
1645626 TGTGTTCGCG
Statistics
Matches: 692, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
721 692 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (721 bp):
TACTACTTCTAGGTTCAACAACATACAATGTAACATCATCTTGTGAAACACTAATGTAAGCAATG
AATCGTTCAACATCTTCATTGTCGGTTAACAAATAAACTTTACCATTTCTATGATAAGATAGCCT
AAATCCAATTAGGGGCTCTAAATTCAATTTCTTTGAAACACGTAGCATTAGAGTTTCATAAGTTA
ACTTTTGTAAAGACAATTTTAGTTGAAGATTCATGGGTAAAGGCATATATTGTAAAACACCATGA
ACATTATCCCATGACCCTCCAAAACACAAATCTATCCAAACATGATCAACATTAGATGATTTCAT
GGTTGTAAATTAATTTACTAAACAGACGAGCTGCGAAACTAAAACCTGTTGCCGGATTGGGAAGG
ATGTCGTTGGATATAGGAACGGATGTCGCCAGAGAGAGTGATAGATGGAGATGGAATGAGTTGCG
ATTTAGGGATTTAGTTTATGATTTGCTGCTGTTGCGTAGTTATATACCCAAAATTTCAGTGTTGC
GATTTACAGATTCTCGTTGCGATTTACGGATTATCGTTGCGATTTACAGATTCTCGTTGCGATTT
ACGGATTATCGTTGCGATTTACGGATACGCGTTGCGATTTACGGATATGCATTGCGATTTACGGA
TACGCATTGCGATTTACGGATACACGTTGCGATTTACGGATACACATTGCGATTTACGGATACGC
GTTGCG
Found at i:1653805 original size:3 final size:3
Alignment explanation
Indices: 1653792--1653837 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
1653782 TTTTCAATGA
1653792 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1653838 ATTATATGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:1657103 original size:105 final size:104
Alignment explanation
Indices: 1656896--1657111 Score: 279
Period size: 105 Copynumber: 2.1 Consensus size: 104
1656886 GATTGTCCAT
* * * *
1656896 AAGGACCACATATAAATTCCTTAAGAACCATATACATATACCAATGATCAAGTAAGTGTCTCAAA
1 AAGGACCACATATAAATTCCTTAAGAACCATATACATATACCAAGGACCAAATAAGTGTCGCAAA
1656961 AGACCTCATACATGCTCCAAAGAATACATATACGTCCCG
66 AGACCTCATACATGCTCCAAAGAATACATATACGTCCCG
* * * * *
1657000 AAGGACCACGTATAAAATTCCTTAAGAATCATATACATATGCTAAGGACCAAATATGTGTCGCAA
1 AAGGACCACATAT-AAATTCCTTAAGAACCATATACATATACCAAGGACCAAATAAGTGTCGCAA
* * * * * * *
1657065 AGGACCTCATAGATGTTCCATAGGATACCTATATGTCCCG
65 AAGACCTCATACATGCTCCAAAGAATACATATACGTCCCG
1657105 AAGGACC
1 AAGGACC
1657112 GTGTGGACCC
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
104 12 0.13
105 83 0.87
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.24
Consensus pattern (104 bp):
AAGGACCACATATAAATTCCTTAAGAACCATATACATATACCAAGGACCAAATAAGTGTCGCAAA
AGACCTCATACATGCTCCAAAGAATACATATACGTCCCG
Found at i:1657648 original size:82 final size:85
Alignment explanation
Indices: 1657556--1657725 Score: 310
Period size: 82 Copynumber: 2.0 Consensus size: 85
1657546 CATATATTCA
1657556 TATAACCTTTTCATATAACTCCATAGATCTTTAGCATAT-ATTTATCCTATATATATACATATC-
1 TATAACCTTTTCATATAACTCCATAGATCTTTAGCATATAATTTATCCTATATATATACATATCA
1657619 CGC-TTATATTCAAGTTCCC
66 CGCTTTATATTCAAGTTCCC
1657638 TATAACCTTTTCATATAACTCCATAGATCTTTAGCATATAATTTATCCTATATATATACATATCA
1 TATAACCTTTTCATATAACTCCATAGATCTTTAGCATATAATTTATCCTATATATATACATATCA
1657703 TCGCTTTATATTCAAGTTCCC
66 -CGCTTTATATTCAAGTTCCC
1657724 TA
1 TA
1657726 ATTGATATAT
Statistics
Matches: 84, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
82 39 0.46
83 24 0.29
85 3 0.04
86 18 0.21
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (85 bp):
TATAACCTTTTCATATAACTCCATAGATCTTTAGCATATAATTTATCCTATATATATACATATCA
CGCTTTATATTCAAGTTCCC
Found at i:1666182 original size:26 final size:26
Alignment explanation
Indices: 1666153--1666204 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1666143 GGAATGGCCA
1666153 AAGATAATTTTGTAATAAATACGTCG
1 AAGATAATTTTGTAATAAATACGTCG
1666179 AAGATAATTTTGTAATAAATACGTCG
1 AAGATAATTTTGTAATAAATACGTCG
1666205 CAATTTTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (26 bp):
AAGATAATTTTGTAATAAATACGTCG
Found at i:1666209 original size:22 final size:24
Alignment explanation
Indices: 1666158--1666212 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 24
1666148 GGCCAAAGAT
*
1666158 AATTTTGTAATAAATACGTCGAAGAT
1 AATTTTGTAATAAATACGTC--AGAC
1666184 AATTTTGTAATAAATACGTC-G-C
1 AATTTTGTAATAAATACGTCAGAC
1666206 AATTTTG
1 AATTTTG
1666213 AGAGGTTGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 7 0.25
23 1 0.04
26 20 0.71
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (24 bp):
AATTTTGTAATAAATACGTCAGAC
Found at i:1666687 original size:23 final size:23
Alignment explanation
Indices: 1666660--1666703 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
1666650 ACTTTAATAT
1666660 ATTTTTA-TATAATATTAAAATTA
1 ATTTTTAGTAT-ATATTAAAATTA
*
1666683 ATTTTTAGTATTTATTAAAAT
1 ATTTTTAGTATATATTAAAAT
1666704 AATCGTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
ATTTTTAGTATATATTAAAATTA
Found at i:1666706 original size:22 final size:22
Alignment explanation
Indices: 1666655--1666706 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
1666645 TAATGACTTT
1666655 AATATATTTTTATATAATATTAA
1 AATA-ATTTTTATATAATATTAA
*
1666678 AATTAATTTTTAGTAT-TTATTAA
1 AA-TAATTTTTA-TATAATATTAA
1666701 AATAAT
1 AATAAT
1666707 CGTTTAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 4 0.15
23 17 0.65
24 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
AATAATTTTTATATAATATTAA
Found at i:1668446 original size:23 final size:24
Alignment explanation
Indices: 1668418--1668494 Score: 70
Period size: 23 Copynumber: 3.2 Consensus size: 24
1668408 AAATTATTAA
*
1668418 TTATTAATGTATTTAA-AATATAT
1 TTATTAATATATTTAACAATATAT
*
1668441 TTATTAATATTTTTAACAATATA-
1 TTATTAATATATTTAACAATATAT
* *
1668464 ATA-TAATATATTATAATAATATTAT
1 TTATTAATATATT-TAACAATA-TAT
1668489 TATATT
1 T-TATT
1668495 GTTAGTTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 8 0.19
23 23 0.55
24 8 0.19
26 2 0.05
27 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (24 bp):
TTATTAATATATTTAACAATATAT
Found at i:1668616 original size:20 final size:20
Alignment explanation
Indices: 1668579--1668618 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
1668569 GTTATATTAT
* * *
1668579 TTATTAATTTCTTTATAATA
1 TTATTAAATTATTAATAATA
1668599 TTATTAAATTATTAATAATA
1 TTATTAAATTATTAATAATA
1668619 AATAATATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (20 bp):
TTATTAAATTATTAATAATA
Found at i:1668649 original size:27 final size:27
Alignment explanation
Indices: 1668572--1668649 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 27
1668562 AATCAAAGTT
* *
1668572 ATATTATTTATTAATTT-CT-TT-ATA
1 ATATTATTTATAAATTTAATATTAATA
* *
1668596 ATATTA-TTA-AATTATTAATAATAAATA
1 ATATTATTTATAAAT-TTAAT-ATTAATA
1668623 ATATTATTTATAAATTTAATATTAATA
1 ATATTATTTATAAATTTAATATTAATA
1668650 TAATAGTCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
22 2 0.05
23 5 0.12
24 7 0.17
26 1 0.02
27 15 0.37
28 8 0.20
29 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (27 bp):
ATATTATTTATAAATTTAATATTAATA
Found at i:1668649 original size:51 final size:51
Alignment explanation
Indices: 1668544--1668651 Score: 121
Period size: 51 Copynumber: 2.1 Consensus size: 51
1668534 ATATTTTGAC
* * * * * *
1668544 AATATATAATAAATTATTAATCAAAGTTATATTATTTATTAATTTCTTTAT
1 AATATATAATAAATTATTAATAAAAATAATATTATTTATAAATTTATATAT
*
1668595 AATAT-TATTAAATTATTAATAATAAATAATATTATTTATAAATTTA-ATATT
1 AATATATAATAAATTATTAATAA-AAATAATATTATTTATAAATTTATATA-T
1668646 AATATA
1 AATATA
1668652 ATAGTCTAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
50 17 0.36
51 30 0.64
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (51 bp):
AATATATAATAAATTATTAATAAAAATAATATTATTTATAAATTTATATAT
Found at i:1668849 original size:15 final size:14
Alignment explanation
Indices: 1668829--1668860 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
1668819 ATATTTTAAT
1668829 AATAATATTAACATA
1 AATAATATTAA-ATA
1668844 AATAATATTAAATA
1 AATAATATTAAATA
1668858 AAT
1 AAT
1668861 TATTCTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (14 bp):
AATAATATTAAATA
Found at i:1668897 original size:22 final size:23
Alignment explanation
Indices: 1668871--1668913 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
1668861 TATTCTAATA
*
1668871 TTTTTAAAAT-GATAATATTAAG
1 TTTTTAAAATAAATAATATTAAG
*
1668893 TTTTTATAATAAATAATATTA
1 TTTTTAAAATAAATAATATTA
1668914 TTTATTATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (23 bp):
TTTTTAAAATAAATAATATTAAG
Found at i:1670797 original size:18 final size:18
Alignment explanation
Indices: 1670762--1670823 Score: 74
Period size: 18 Copynumber: 3.5 Consensus size: 18
1670752 ACCTTCTTTT
* *
1670762 AAATATAAAAGTTAAAAA
1 AAATATAAAATTTTAAAA
1670780 AAAT-TATAAATTTTAAAA
1 AAATATA-AAATTTTAAAA
*
1670798 ATATATAAAATTTT-AAA
1 AAATATAAAATTTTAAAA
1670815 AAATATAAA
1 AAATATAAA
1670824 CACGACACAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
17 13 0.34
18 23 0.61
19 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
AAATATAAAATTTTAAAA
Found at i:1670818 original size:19 final size:18
Alignment explanation
Indices: 1670777--1670821 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
1670767 TAAAAGTTAA
1670777 AAAAAAT-TATAAATTTT
1 AAAAAATATATAAATTTT
1670794 -AAAAATATATAAAATTTT
1 AAAAAATATAT-AAATTTT
1670812 AAAAAATATA
1 AAAAAATATA
1670822 AACACGACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.24
17 3 0.12
18 7 0.28
19 9 0.36
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAAATATATAAATTTT
Found at i:1674252 original size:21 final size:21
Alignment explanation
Indices: 1674226--1674266 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1674216 ATTTTTTAGT
*
1674226 GAGCTTAACGAGCAACGAGTC
1 GAGCTTAACAAGCAACGAGTC
1674247 GAGCTTAACAAGCAACGAGT
1 GAGCTTAACAAGCAACGAGT
1674267 GGAGTCAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.27, T:0.15
Consensus pattern (21 bp):
GAGCTTAACAAGCAACGAGTC
Found at i:1674326 original size:72 final size:72
Alignment explanation
Indices: 1674246--1674381 Score: 209
Period size: 72 Copynumber: 1.9 Consensus size: 72
1674236 AGCAACGAGT
* * * *
1674246 CGAGCTTAACAAGCAACGAGTGGAGTCAAGCAGCAAATTTTTTTAACGAGCACGAGTCGAGCACA
1 CGAGCTTAACAAGCAACAAATCGAGTCAAGCAGCAAATTTTTTTAACGAGCACGAGTCAAGCACA
1674311 AATTTAA
66 AATTTAA
* * *
1674318 CGAGCTTAACGAGCAACAAATCGAGTCGAGCAGCAAATTTTTTTAATGAGCACGAGTCAAGCAC
1 CGAGCTTAACAAGCAACAAATCGAGTCAAGCAGCAAATTTTTTTAACGAGCACGAGTCAAGCAC
1674382 TACCCAACTC
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 57 1.00
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (72 bp):
CGAGCTTAACAAGCAACAAATCGAGTCAAGCAGCAAATTTTTTTAACGAGCACGAGTCAAGCACA
AATTTAA
Found at i:1676191 original size:23 final size:23
Alignment explanation
Indices: 1676161--1676218 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
1676151 TAGGTGAAGG
1676161 ACTATATATACAAGTATATATAC
1 ACTATATATACAAGTATATATAC
1676184 ACTATATATACAAGTATATATAC
1 ACTATATATACAAGTATATATAC
1676207 ACTATATATACA
1 ACTATATATACA
1676219 CAGGAGAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.34
Consensus pattern (23 bp):
ACTATATATACAAGTATATATAC
Found at i:1684793 original size:15 final size:15
Alignment explanation
Indices: 1684760--1684798 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
1684750 TCCTCGCTGT
*
1684760 CATCGTCGTCGTCAC
1 CATCGTCATCGTCAC
**
1684775 CATCGTCATCGTCGG
1 CATCGTCATCGTCAC
1684790 CATCGTCAT
1 CATCGTCAT
1684799 TGTCCTGAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.21, T:0.28
Consensus pattern (15 bp):
CATCGTCATCGTCAC
Found at i:1686797 original size:111 final size:111
Alignment explanation
Indices: 1686660--1686881 Score: 401
Period size: 111 Copynumber: 2.0 Consensus size: 111
1686650 ATTACAAAAA
* *
1686660 TTAATTCTTAATCTAATAATCATGCATTAAATGAATAAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATAAACTAAATATTACTAATAATTTAAATTA
1686725 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCA-AGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGT-AGAGATAT
*
1686771 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATAAACTAAATATTACTAATAATTTAAATTA
1686836 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
1686882 ATGATTTCCA
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
110 1 0.01
111 106 0.99
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATAAACTAAATATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
Done.