genome.fa.s8513.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008513.1 Hibiscus syriacus cultivar Beakdansim tig00111373_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128947

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2687--2732	2	23.0	2	100	0	92	50	0	0	50	1.00
3052--3088	9	4.0	9	96	3	65	54	0	2	43	1.14
3267--3379	20	5.6	20	75	7	102	38	18	23	19	1.93
3284--3359	21	3.7	21	80	3	100	40	18	25	15	1.90
3267--3359	41	2.3	41	100	0	186	39	18	24	17	1.91
3345--3422	41	1.9	41	83	0	102	39	20	15	24	1.91
3394--3437	20	2.2	20	91	0	70	29	27	18	25	1.98
3948--4005	20	3.2	18	78	9	64	44	22	20	12	1.84
4012--4201	19	10.1	19	75	15	171	12	22	21	44	1.85
4083--4155	33	2.2	33	92	0	119	12	23	24	39	1.89
6167--6290	43	2.9	43	78	4	117	22	36	18	22	1.95
6224--6290	21	3.2	21	66	6	55	23	35	20	19	1.95
7286--7321	14	2.6	14	95	0	63	30	0	25	44	1.54
7501--7651	19	8.7	19	63	21	71	15	22	19	41	1.90
7505--7631	33	3.9	32	85	8	184	15	22	18	42	1.89
7498--7630	66	2.0	66	95	0	239	17	22	18	41	1.90
9611--9635	12	2.1	12	100	0	50	0	28	0	72	0.86
10923--11014	20	4.9	20	79	15	106	39	21	22	16	1.92
10945--11026	34	2.4	34	97	0	155	41	20	23	14	1.89
10965--10994	14	2.1	14	93	0	51	46	23	20	10	1.80
11033--11153	19	6.6	19	87	6	171	14	20	18	46	1.84
11140--11182	20	2.2	20	100	0	86	9	18	27	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13119--13274	31	5.0	31	92	1	251	37	21	19	21	1.95
13452--13498	23	2.0	24	91	4	78	34	21	0	44	1.52
14009--14052	21	2.1	21	86	0	61	15	25	27	31	1.96
17041--17195	31	5.0	31	90	3	242	36	21	20	21	1.95
17041--17193	61	2.5	62	94	3	265	36	21	20	21	1.95
17373--17419	23	2.0	24	91	4	78	34	21	0	44	1.52
17932--17975	21	2.1	21	86	0	61	15	25	27	31	1.96
19434--19500	19	3.5	19	83	4	89	37	23	23	14	1.93
19489--19546	14	3.9	14	79	16	71	48	25	17	8	1.75
19473--19551	32	2.4	33	95	2	142	46	24	18	10	1.80
19558--19691	19	7.6	19	75	16	101	12	21	23	41	1.88
19580--19637	14	3.9	14	79	16	71	8	17	25	48	1.75
19563--19653	32	2.8	33	94	3	166	10	18	23	47	1.80
19638--19691	20	2.8	19	88	5	81	16	25	24	33	1.96
20158--20202	18	2.5	18	85	0	63	11	15	46	26	1.79
21516--21569	20	2.8	20	80	2	65	48	22	16	12	1.80
21803--21845	22	2.0	22	90	0	68	20	16	41	20	1.90
22034--22085	20	2.6	20	96	0	95	25	19	30	25	1.98
22075--22150	21	3.7	21	78	3	100	15	25	18	40	1.90
22094--22167	20	3.7	20	76	3	85	18	22	17	40	1.91
22080--22167	41	2.1	41	97	0	167	18	23	17	40	1.90
26672--26722	22	2.4	22	93	3	86	17	50	17	13	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32292--32394	52	2.0	52	96	0	188	22	23	12	41	1.88
36888--36990	52	2.0	52	96	0	188	22	23	12	41	1.88
46338--46377	10	4.0	10	90	0	62	50	0	0	50	1.00
49172--49255	43	2.0	43	92	0	141	20	2	21	55	1.54
73847--73871	2	12.5	2	100	0	50	48	0	0	52	1.00
74372--74760	160	2.5	160	94	2	689	40	5	5	49	1.47
77225--77254	5	6.0	5	100	0	60	20	20	40	20	1.92
80071--80192	63	2.0	62	82	8	149	32	17	18	31	1.94
80709--80735	2	13.5	2	100	0	54	48	0	0	51	1.00
83391--83447	31	2.0	29	83	13	73	56	7	7	29	1.53
85854--85978	31	4.0	31	90	2	180	36	23	20	20	1.95
89956--90059	31	3.3	31	90	5	163	37	23	20	19	1.94
90178--90288	58	1.9	58	81	3	134	28	20	10	39	1.86
90851--90894	20	2.2	20	83	4	52	15	25	27	31	1.96
95060--95107	17	2.8	17	100	0	96	47	0	29	22	1.51
97954--97992	20	1.9	21	89	5	62	48	0	10	41	1.37
102266--102290	3	8.3	3	100	0	50	0	32	0	68	0.90
112146--112172	2	13.5	2	100	0	54	51	0	0	48	1.00
112570--112676	42	2.5	42	92	0	178	46	9	1	42	1.47
118790--118827	16	2.4	17	86	8	53	36	13	5	44	1.66
118972--119025	19	2.8	19	91	0	81	51	3	7	37	1.48
119635--119665	14	2.2	14	94	0	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120308--120337	2	15.0	2	100	0	60	50	0	0	50	1.00
127227--127361	72	1.9	72	96	0	252	40	7	10	42	1.67
127470--127552	31	2.6	31	98	1	157	36	9	6	48	1.61

Tables:   1

The End!