genome.fa.s8516.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008516.1 Hibiscus syriacus cultivar Beakdansim tig00111379_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131998

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3583--3837	138	1.8	138	85	1	359	40	18	12	28	1.87
4484--4534	20	2.6	19	81	12	59	25	31	13	29	1.94
9984--10023	19	2.0	20	85	4	55	42	17	7	32	1.77
11180--11225	23	2.0	23	83	8	58	19	19	4	56	1.58
11425--11614	68	2.8	68	89	0	299	27	26	15	30	1.96
11774--12675	55	16.4	55	86	2	1161	27	18	18	35	1.94
12663--12767	54	1.9	54	90	0	165	28	20	22	27	1.99
16446--16475	14	2.1	14	100	0	60	46	13	6	33	1.69
17539--17607	36	1.9	36	85	5	95	28	26	17	27	1.97
17538--17607	20	3.7	20	69	21	60	30	25	17	27	1.97
17658--17695	20	1.9	20	94	0	67	26	31	15	26	1.96
20417--20485	20	3.7	20	76	21	85	27	28	15	27	1.96
27724--27877	78	2.0	77	88	1	227	17	28	7	46	1.76
33915--33969	3	19.0	3	83	7	69	60	0	3	36	1.15
33914--33969	20	2.8	20	86	0	85	58	0	3	37	1.15
34159--34198	18	2.2	18	95	0	71	20	27	20	32	1.97
34723--34753	2	15.5	2	100	0	62	51	0	0	48	1.00
35709--35739	6	5.2	6	92	0	53	51	3	0	45	1.17
42957--42996	2	20.0	2	100	0	80	0	50	0	50	1.00
48625--48722	45	2.2	45	83	0	124	25	27	12	34	1.92
49089--49124	14	2.6	14	90	0	63	83	0	8	8	0.82
49576--49615	14	2.7	14	84	7	53	45	5	7	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49669--49741	26	3.2	22	72	23	62	52	1	4	42	1.29
51340--52011	105	6.4	105	93	0	1083	22	18	25	33	1.97
52824--52877	6	9.7	6	78	13	62	0	1	14	83	0.73
52824--52877	16	3.3	16	82	10	65	0	1	14	83	0.73
52825--52872	22	2.2	22	88	0	69	0	2	16	81	0.79
63293--63326	13	2.6	13	90	0	59	82	0	8	8	0.85
63779--63818	14	2.7	14	84	7	53	45	5	7	42	1.54
66614--67151	192	2.8	192	80	6	519	37	10	17	35	1.84
67451--67780	72	4.5	73	79	4	310	40	8	16	34	1.79
67474--67780	147	2.1	142	80	4	317	40	8	16	34	1.79
69536--69564	15	1.9	15	100	0	58	34	0	3	62	1.12
75828--75888	22	2.7	23	77	7	72	24	36	24	14	1.93
77470--77507	18	2.1	18	90	0	58	47	23	28	0	1.52
77967--77991	13	1.9	13	100	0	50	40	0	16	44	1.47
80315--80415	20	5.1	20	75	4	71	30	38	15	14	1.88
84561--84608	22	2.2	22	88	0	69	18	18	22	39	1.92
86210--86249	19	2.1	19	85	0	53	17	12	20	50	1.78
88028--88056	5	5.8	5	100	0	58	82	0	0	17	0.66
89898--89954	17	3.3	17	80	7	53	57	7	3	31	1.42
89897--89943	23	2.1	22	88	4	67	55	6	4	34	1.45
90891--92877	663	3.0	665	89	2	2933	31	15	17	35	1.91
94240--94304	17	3.9	17	76	13	64	24	26	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94240--94302	31	2.0	32	84	3	83	25	23	20	30	1.99
94336--94377	21	2.0	21	90	9	68	30	23	23	21	1.99
94406--94477	21	3.6	21	69	19	73	40	34	8	16	1.79
94414--94488	37	2.0	37	100	0	150	37	33	10	18	1.86
95734--95789	22	2.6	22	94	2	96	23	10	35	30	1.89
96488--96540	23	2.3	23	93	0	88	22	18	28	30	1.98
96901--96934	17	2.1	16	88	5	50	76	0	8	14	1.01
97409--97456	25	2.0	25	83	4	62	58	12	2	27	1.46
100764--100811	19	2.5	19	80	6	53	64	0	16	18	1.29
107162--107195	17	2.1	16	88	5	50	76	0	8	14	1.01
107670--107716	24	2.0	24	83	8	60	57	12	2	27	1.47
115334--115416	37	2.3	37	89	2	123	30	22	20	26	1.98
121267--121343	23	3.5	23	70	8	79	27	27	19	25	1.99
124736--124760	13	1.9	13	100	0	50	32	8	8	52	1.60
126481--126527	2	24.5	2	91	8	80	48	0	0	51	1.00
126481--126527	13	3.5	14	91	8	80	48	0	0	51	1.00
126648--126681	14	2.5	14	95	4	61	44	8	0	47	1.34
127024--127182	64	2.5	63	76	12	155	30	24	17	27	1.97
129925--130083	64	2.5	63	81	8	187	31	23	18	27	1.97
130055--130103	19	2.6	19	84	9	57	24	28	20	26	1.99
129925--130103	64	2.8	63	76	15	170	30	24	18	27	1.98

Tables:   1

The End!