genome.fa.s8517.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008517.1 Hibiscus syriacus cultivar Beakdansim tig00111383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35973

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4171--4325	20	7.8	20	73	8	93	37	25	17	19	1.93
4312--4485	20	8.6	20	79	5	118	34	25	20	20	1.96
4292--4486	40	4.9	39	80	3	183	35	24	20	19	1.95
4292--4485	60	3.2	60	83	0	244	35	24	20	19	1.95
4861--4929	32	2.2	32	94	0	120	11	23	18	46	1.82
4861--4910	18	3.0	18	69	22	54	12	24	20	44	1.85
5023--5097	19	3.9	19	84	3	96	44	21	22	12	1.85
5143--5232	14	5.7	14	72	23	72	8	24	23	43	1.82
5128--5240	33	3.5	33	95	2	203	9	23	21	46	1.80
5123--5218	19	5.7	18	71	22	84	10	22	22	43	1.84
8449--8484	14	2.6	14	95	0	63	33	0	22	44	1.53
8589--8689	19	5.6	19	83	14	142	43	17	23	14	1.87
8703--8757	14	3.6	14	76	21	56	10	21	20	47	1.80
8695--8989	33	8.5	33	84	10	283	13	21	17	46	1.83
8717--8989	19	15.4	19	81	15	354	13	21	17	46	1.83
8695--8989	52	5.6	53	87	11	316	13	21	17	46	1.83
9906--10113	20	10.5	20	85	2	213	20	17	25	37	1.94
10080--10176	21	4.8	20	74	6	70	21	18	23	36	1.95
12039--12204	60	2.8	60	80	9	162	41	7	19	31	1.79
14437--14473	18	2.1	18	89	0	56	51	10	5	32	1.60
14677--14741	23	2.8	23	90	0	94	38	18	7	35	1.80
15099--15155	22	2.5	23	85	5	80	38	19	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14679--16929	420	5.4	427	94	5	3950	38	13	8	39	1.75
15505--15556	21	2.5	20	84	9	68	42	19	1	36	1.62
15510--15580	23	3.2	22	84	8	81	39	19	5	35	1.76
16346--16406	21	2.8	21	85	5	77	37	19	6	36	1.78
16775--16834	23	2.6	23	89	0	84	38	18	6	36	1.77
19384--20232	183	4.6	184	97	0	1578	34	15	14	35	1.89
19384--20232	367	2.3	367	97	0	1576	34	15	14	35	1.89
21681--21767	3	29.0	3	77	0	84	24	34	5	35	1.79
21681--21782	18	5.7	18	79	0	87	22	34	6	36	1.81
21689--21779	42	2.2	42	91	0	146	21	35	7	35	1.83
23223--24618	193	7.1	197	94	3	2409	31	15	15	37	1.89
23223--24618	391	3.6	391	94	3	2406	31	15	15	37	1.89
24692--24736	19	2.4	19	92	0	72	57	8	2	31	1.41
26505--26564	31	1.9	31	82	3	75	25	45	1	28	1.63
28832--28869	20	1.9	20	94	0	67	18	15	10	55	1.68
28993--29038	21	2.2	21	88	11	69	19	17	10	52	1.74
29100--29529	222	1.9	220	89	6	674	38	8	7	45	1.63
30868--30972	45	2.4	45	88	4	160	11	35	10	42	1.75
31673--31872	101	2.0	101	95	0	364	32	8	15	44	1.76
31712--31871	54	3.1	54	63	21	133	33	7	13	45	1.72
32471--32577	46	2.3	46	91	1	180	11	35	10	42	1.75

Tables:   1

The End!