genome.fa.s8518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008518.1 Hibiscus syriacus cultivar Beakdansim tig00111385_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39356

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3987--4028	17	2.5	17	96	0	75	50	7	9	33	1.62
6369--6403	15	2.3	15	90	0	52	40	31	11	17	1.85
20295--20342	23	2.1	23	88	0	69	35	12	18	33	1.89
20717--20770	23	2.5	20	75	18	54	42	18	1	37	1.61
20732--20794	23	2.7	23	90	0	90	38	19	6	36	1.77
20454--21321	429	2.0	428	98	1	1679	38	13	8	39	1.75
21146--21199	23	2.5	20	75	18	54	42	18	1	37	1.61
21161--21223	23	2.7	23	90	0	90	38	19	6	36	1.77
23767--24430	181	3.7	183	96	2	1214	34	15	14	35	1.88
25783--25830	9	5.3	9	82	0	60	25	33	4	37	1.75
25783--25842	12	5.2	12	82	11	63	23	33	6	36	1.81
25783--25830	6	8.0	6	85	0	60	25	33	4	37	1.75
25783--25830	15	3.2	15	90	0	60	25	33	4	37	1.75
26905--27357	227	2.0	224	96	3	847	33	18	21	26	1.96
27415--27445	15	2.1	15	100	0	62	12	12	19	54	1.70
27507--29107	199	8.1	199	95	3	2825	31	15	14	37	1.88
27507--29107	589	2.7	588	95	3	2821	31	15	14	37	1.88
29189--29233	19	2.4	19	92	0	72	57	8	2	31	1.41
31019--31084	33	2.0	33	87	0	96	24	45	1	28	1.62
33175--33226	24	2.2	24	86	3	70	26	7	11	53	1.63
33371--33417	20	2.4	19	79	10	58	19	17	8	55	1.67
33538--33584	20	2.3	20	89	10	78	17	17	10	55	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38757--38793	20	1.9	19	89	10	58	45	10	24	18	1.81

Tables:   1

The End!