Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008519.1 Hibiscus syriacus cultivar Beakdansim tig00111386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105782

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
280--344
34
1.9
34
87
0
94
26
44
1
27
1.63
382--422
21
1.9
22
90
5
66
19
24
14
41
1.89
2633--2678
20
2.3
19
78
10
56
19
17
8
54
1.68
2798--2843
19
2.4
19
86
13
67
17
17
10
54
1.70
2800--2858
20
3.0
19
80
14
66
16
15
15
52
1.75
8032--8068
20
1.9
19
89
10
58
45
10
24
18
1.81
14591--14619
2
14.5
2
100
0
58
48
0
0
51
1.00
18044--18125
29
2.8
29
92
0
137
45
21
9
23
1.81
18143--18191
13
3.8
13
97
2
91
12
24
46
16
1.81
25290--25372
29
2.9
29
92
0
139
44
22
8
24
1.80
25379--25446
17
4.2
17
81
14
90
13
23
44
19
1.85
25389--25424
13
2.8
13
95
4
65
11
25
47
16
1.79
31637--31782
37
3.9
38
81
3
163
41
7
4
45
1.53
31971--32083
58
1.9
58
90
0
181
36
8
18
36
1.82
33883--34116
117
2.0
117
93
0
396
23
17
22
35
1.95
34290--34370
31
2.6
31
86
0
108
32
9
19
38
1.85
37659--37688
8
3.6
8
95
4
51
73
0
0
26
0.84
37659--37690
3
11.3
3
87
12
50
71
0
0
28
0.86
37899--37972
30
2.5
30
86
0
94
39
14
4
41
1.65
38128--38300
38
4.6
38
82
5
190
47
4
2
45
1.38
38193--38257
20
3.3
19
72
10
51
52
3
0
44
1.16
40371--40401
2
15.5
2
100
0
62
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48619--48680
21
2.9
21
87
4
79
19
24
35
20
1.96
52337--52380
21
2.2
20
84
12
54
27
13
6
52
1.66
52496--52538
20
2.2
20
83
8
52
37
4
2
55
1.33
55693--55732
20
2.0
20
100
0
80
35
0
15
50
1.44
57200--57233
17
2.1
16
88
5
50
44
0
11
44
1.40
58022--58046
11
2.3
11
100
0
50
92
8
0
0
0.40
62299--62364
24
2.8
25
81
6
75
37
1
1
59
1.16
62317--62347
15
2.1
15
93
0
53
35
0
0
64
0.94
63465--63630
60
2.8
60
75
5
147
34
17
6
41
1.74
67532--67850
161
2.0
161
86
3
455
31
21
8
38
1.84
74811--74899
29
3.1
29
85
0
124
17
40
28
13
1.88
75106--75189
29
2.9
29
83
0
96
13
29
39
17
1.88
84986--85024
20
2.0
20
85
10
53
30
28
10
30
1.90
87768--88176
199
2.1
198
92
2
671
36
13
18
32
1.89
92622--92665
20
2.3
20
84
7
56
20
29
11
38
1.87
95877--95911
2
17.5
2
100
0
70
51
0
0
48
1.00
96416--96475
20
3.0
20
100
0
120
40
30
0
30
1.57
103264--103412
35
4.2
35
81
7
144
35
5
17
41
1.72
103291--103409
37
3.3
37
86
8
156
34
5
17
42
1.71

Tables:   1

The End!