genome.fa.s852.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000852.1 Hibiscus syriacus cultivar Beakdansim tig00001645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83121

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623--1660	19	2.0	19	100	0	76	26	10	26	36	1.89
3988--4021	17	2.0	17	88	11	52	47	11	20	20	1.81
5570--5619	18	2.6	19	79	17	50	56	2	6	36	1.36
6536--6588	21	2.5	22	81	12	65	26	15	28	30	1.96
7734--7784	19	2.6	20	84	3	68	35	33	11	19	1.88
7839--7885	20	2.3	20	92	0	76	36	25	17	21	1.94
7879--7938	20	3.0	20	85	4	59	40	20	16	23	1.91
8387--8439	14	3.7	14	75	5	52	49	26	13	11	1.75
11937--11976	21	1.9	21	89	0	62	27	0	35	37	1.57
12663--12702	21	1.9	21	89	0	62	10	25	40	25	1.86
20145--20243	21	4.7	21	70	9	76	25	33	18	23	1.97
21670--21708	13	2.9	14	88	7	62	33	0	23	43	1.54
21620--21757	60	2.2	63	81	8	149	31	0	17	50	1.52
21895--21933	20	2.0	20	89	0	60	20	20	20	38	1.94
22146--22232	39	2.2	39	97	0	165	17	14	20	47	1.83
22544--22589	24	1.9	24	90	0	74	50	15	2	32	1.56
23414--23449	18	2.0	18	94	0	63	16	2	25	55	1.55
25707--25760	24	2.2	24	90	0	81	40	18	18	22	1.91
26456--26489	16	2.1	16	88	0	50	64	0	5	29	1.17
26624--26674	18	2.7	19	72	6	59	31	11	21	35	1.90
26687--26778	20	4.6	20	75	8	80	20	14	23	41	1.89
26770--26836	21	3.2	21	95	0	116	37	14	25	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27847--27901	21	2.6	21	94	0	92	27	30	18	23	1.97
35242--35294	21	2.5	22	84	12	74	26	16	28	28	1.97
36418--36456	2	19.5	2	100	0	78	48	0	0	51	1.00
37155--37193	15	2.6	15	87	0	60	25	0	2	71	0.98
37273--37308	3	12.0	3	87	0	54	69	2	0	27	1.02
37346--37420	3	24.0	3	72	17	55	60	1	6	32	1.31
44024--44083	31	1.9	31	83	6	77	46	15	15	23	1.82
44617--44672	29	1.9	29	82	13	71	26	10	16	46	1.79
45710--45760	20	2.5	20	96	0	93	45	25	11	17	1.83
45899--45940	22	1.9	22	85	0	57	23	33	16	26	1.96
46019--46053	17	2.1	17	89	5	54	25	0	2	71	1.00
46019--46067	19	2.8	17	84	6	53	26	0	4	69	1.06
46314--46363	19	2.6	20	84	9	68	14	14	20	52	1.75
51311--51373	14	4.6	14	80	4	83	31	0	20	47	1.51
51302--51360	27	2.2	27	93	0	100	28	0	18	52	1.46
53853--53906	24	2.2	24	93	0	90	40	20	18	20	1.91
53853--53920	24	2.8	24	84	0	64	38	20	17	23	1.93
54032--54065	12	2.8	12	90	0	50	14	0	29	55	1.40
54855--54964	20	5.4	20	69	21	68	35	13	21	29	1.92
54856--54966	40	2.8	40	83	1	150	35	13	21	29	1.92
54936--54990	20	2.7	20	85	2	74	23	9	25	41	1.83
55249--55306	28	2.1	28	87	6	82	41	0	1	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59856--59888	16	1.9	18	88	11	52	51	6	0	42	1.26
60169--60194	13	2.0	13	100	0	52	38	0	0	61	0.96
60182--60350	22	7.7	22	86	5	234	42	0	8	48	1.39
60182--60350	44	3.8	44	90	3	259	42	0	8	48	1.39
60177--60350	66	2.6	66	89	0	258	43	0	8	47	1.38
61246--61309	21	3.1	21	75	4	76	17	18	26	37	1.93
61250--61352	41	2.5	41	86	10	133	20	20	22	36	1.95
61299--61381	19	4.1	20	73	11	62	21	16	24	37	1.94
61298--61390	22	4.4	22	77	9	95	20	18	24	36	1.95
62010--62060	16	3.2	16	97	0	93	17	11	37	33	1.86
62138--62181	19	2.3	19	96	0	79	45	18	18	18	1.86
62786--62853	14	4.7	14	72	18	50	44	2	0	52	1.16
62787--62860	29	2.6	29	76	10	80	45	4	0	50	1.20
64307--64338	15	2.1	16	94	5	57	50	6	0	43	1.27
81687--81726	19	2.2	18	86	8	55	17	15	17	50	1.79

Tables:   1

The End!