Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008521.1 Hibiscus syriacus cultivar Beakdansim tig00111388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1601068
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 7
Found at i:513489 original size:13 final size:13
Alignment explanation
Indices: 513471--513495 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
513461 CTCAATGGAG
513471 ATTTTTTTTCAAA
1 ATTTTTTTTCAAA
513484 ATTTTTTTTCAA
1 ATTTTTTTTCAA
513496 GAGACAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTTTTTTCAAA
Found at i:517900 original size:38 final size:38
Alignment explanation
Indices: 517858--517934 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
517848 TCTTGTTAAG
* * * *
517858 GATGACTAGTCATATTCTGAATACAACATTGTTCTTTC
1 GATGACTAGTCATATTCTAAAGACAAAATTGTTCCTTC
517896 GATGACTAGTCATATTCTAAAGACAAAATTGTTCCTTC
1 GATGACTAGTCATATTCTAAAGACAAAATTGTTCCTTC
517934 G
1 G
517935 TGTTGAGGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (38 bp):
GATGACTAGTCATATTCTAAAGACAAAATTGTTCCTTC
Found at i:517965 original size:46 final size:46
Alignment explanation
Indices: 517896--517986 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
517886 TTGTTCTTTC
*
517896 GATGACTAGTCATATTCTAAAGACAAAATTGTTCCTTCGTGTTGAG
1 GATGACTAGTCATATTCTAAAGACAAAATTGTTCCTTCGCGTTGAG
* * * *
517942 GATGACTAGTCGTATTCTGAAGACAACATTGTTTCTTCGCGTTGA
1 GATGACTAGTCATATTCTAAAGACAAAATTGTTCCTTCGCGTTGA
517987 TTAAGTTTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (46 bp):
GATGACTAGTCATATTCTAAAGACAAAATTGTTCCTTCGCGTTGAG
Found at i:524089 original size:7 final size:7
Alignment explanation
Indices: 524077--524106 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
524067 CATTCTTTAG
524077 CATGCAA
1 CATGCAA
524084 CATGCAA
1 CATGCAA
524091 CATGCAA
1 CATGCAA
524098 CATGCAA
1 CATGCAA
524105 CA
1 CA
524107 CACAAGATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.30, G:0.13, T:0.13
Consensus pattern (7 bp):
CATGCAA
Found at i:527316 original size:31 final size:31
Alignment explanation
Indices: 527281--527373 Score: 105
Period size: 31 Copynumber: 3.0 Consensus size: 31
527271 TCCACCATTT
*
527281 TGTGTCACATTATTACTTTCAACACGTGATA
1 TGTGTCACATTATTACTTTCGACACGTGATA
* * * * *
527312 TGTGTTACATTATCATTTTTGACCCGTGATA
1 TGTGTCACATTATTACTTTCGACACGTGATA
* * *
527343 TGTGTCATATCATTACTTTCGACACATGATA
1 TGTGTCACATTATTACTTTCGACACGTGATA
527374 GTCTTGTATT
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (31 bp):
TGTGTCACATTATTACTTTCGACACGTGATA
Found at i:530415 original size:3 final size:3
Alignment explanation
Indices: 530407--530444 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
530397 TTGGGACTAT
530407 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
530445 TCCTATAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:530900 original size:18 final size:18
Alignment explanation
Indices: 530877--530912 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
530867 CGATGAGTAC
530877 CATTAATTTAATTTATAA
1 CATTAATTTAATTTATAA
530895 CATTAATTTAATTTATAA
1 CATTAATTTAATTTATAA
530913 AATTTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (18 bp):
CATTAATTTAATTTATAA
Found at i:531758 original size:28 final size:28
Alignment explanation
Indices: 531690--531759 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 28
531680 AAATTTAAAT
531690 TAAATAAATATTAAAAATTAATTTTATCA
1 TAAAT-AATATTAAAAATTAATTTTATCA
* * *
531719 TAAATAAT-TTAAAATTTTATATTTAT-T
1 TAAATAATATTAAAAATTAAT-TTTATCA
*
531746 TAATTAATATTAAA
1 TAAATAATATTAAA
531760 CTAATAGAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 17 0.49
28 13 0.37
29 5 0.14
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (28 bp):
TAAATAATATTAAAAATTAATTTTATCA
Found at i:531915 original size:14 final size:14
Alignment explanation
Indices: 531878--531924 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
531868 TGATTATACA
531878 ATTATATAAATTAA-
1 ATTATAT-AATTAAT
*
531892 A-TATAAAATTAAT
1 ATTATATAATTAAT
531905 ATTATATAATTAAT
1 ATTATATAATTAAT
*
531919 TTTATA
1 ATTATA
531925 CACTAGCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 6 0.21
13 5 0.18
14 17 0.61
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTATATAATTAAT
Found at i:545449 original size:117 final size:117
Alignment explanation
Indices: 545300--545521 Score: 281
Period size: 117 Copynumber: 1.9 Consensus size: 117
545290 TAAAAATGAT
* *
545300 CTTCTTTTGAAAACTAAAATAGACTTGGAAAATCAAAATGAAATGTTG-AGAA-ATGAGTTAGAG
1 CTTCTTTTGAAAACGAAAATAGACTTGGAAAATCAAAATGAAATCTTGAAGAAGA--AGTTAGAG
*
545363 CTTTCAAAAATAAAATCTGAAAACT-TTGAAAAAGAAATTTTCAAATTAAACAAA
64 CTTTCAAAAATAAAATCTG-AAACTATTGAAAAAGAAAATTTCAAATTAAACAAA
* * * *
545417 CTTCTTCTTG-AAACGAAAATGGATTTTGAAAATCAAAATGAAATCTTGAAGAAGAATTTAGAGC
1 CTTCTT-TTGAAAACGAAAATAGACTTGGAAAATCAAAATGAAATCTTGAAGAAGAAGTTAGAGC
* * * *
545481 TTTCAAAAATGAATTTTGAAAGTATTGAAAAAGAAAATTTC
65 TTTCAAAAATAAAATCTGAAACTATTGAAAAAGAAAATTTC
545522 GATTTGAAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
116 4 0.04
117 78 0.87
118 7 0.08
119 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (117 bp):
CTTCTTTTGAAAACGAAAATAGACTTGGAAAATCAAAATGAAATCTTGAAGAAGAAGTTAGAGCT
TTCAAAAATAAAATCTGAAACTATTGAAAAAGAAAATTTCAAATTAAACAAA
Found at i:549961 original size:15 final size:16
Alignment explanation
Indices: 549941--549981 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
549931 GTTTACTTCA
*
549941 GAATGATT-AAGCGTT
1 GAATGATTCAAACGTT
*
549956 GAATGATTCAAATGTT
1 GAATGATTCAAACGTT
549972 GAATGATTCA
1 GAATGATTCA
549982 GAGGCTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (16 bp):
GAATGATTCAAACGTT
Found at i:550174 original size:20 final size:20
Alignment explanation
Indices: 550149--550195 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
550139 AACGGTTCAA
550149 CATTCAGCGCTAAATGGTTC
1 CATTCAGCGCTAAATGGTTC
550169 CATTCAGCGCTAAATGGTTC
1 CATTCAGCGCTAAATGGTTC
550189 CATTCAG
1 CATTCAG
550196 AGCCAAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (20 bp):
CATTCAGCGCTAAATGGTTC
Found at i:558247 original size:47 final size:48
Alignment explanation
Indices: 558162--558262 Score: 118
Period size: 47 Copynumber: 2.1 Consensus size: 48
558152 CGTTACTCTT
* * * * *
558162 AATATTTTATTAAAAAAATATATTACTAGTTTTGTTATTATTTT-TTAA
1 AATATTTTATTAAAAAAATATATTAATAATATTATTATT-TTTTCCTAA
558210 AATATTTT-TTATAAAAAAT-TATTAATAATATTATTATTTTTTCCTAA
1 AATATTTTATTA-AAAAAATATATTAATAATATTATTATTTTTTCCTAA
558257 AATATT
1 AATATT
558263 AATTTTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
46 4 0.09
47 27 0.59
48 15 0.33
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (48 bp):
AATATTTTATTAAAAAAATATATTAATAATATTATTATTTTTTCCTAA
Found at i:559047 original size:45 final size:45
Alignment explanation
Indices: 558974--559059 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
558964 TGATAATTTA
* * *
558974 ATTCAAATATTATTTATTTTATATTTTATTTTAT-AATATATCAT
1 ATTCAAATATTATTAATCTTATATTTTATGTTATAAATATATCAT
*
559018 ATTCAAGTATTAATTAATCTTATATTTTATGTTATAAATATA
1 ATTCAAATATT-ATTAATCTTATATTTTATGTTATAAATATA
559060 ATTAGAGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 10 0.28
45 20 0.56
46 6 0.17
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (45 bp):
ATTCAAATATTATTAATCTTATATTTTATGTTATAAATATATCAT
Found at i:559927 original size:31 final size:31
Alignment explanation
Indices: 559892--559960 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
559882 TTTTAAAAAA
*
559892 TGCAATACAATCCCCCAACATTTAGTATGTT
1 TGCAATACAATCCCCCAACATTTAATATGTT
*** * *
559923 TGCAATATGGTCCCCTAACATTTAATCTGTT
1 TGCAATACAATCCCCCAACATTTAATATGTT
559954 TGCAATA
1 TGCAATA
559961 TGGTCCTCAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (31 bp):
TGCAATACAATCCCCCAACATTTAATATGTT
Found at i:559961 original size:31 final size:31
Alignment explanation
Indices: 559902--559966 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
559892 TGCAATACAA
*
559902 TCCCCCAACATTTAGTATGTTTGCAATATGG
1 TCCCCCAACATTTAATATGTTTGCAATATGG
* *
559933 TCCCCTAACATTTAATCTGTTTGCAATATGG
1 TCCCCCAACATTTAATATGTTTGCAATATGG
559964 TCC
1 TCC
559967 TCAACGTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (31 bp):
TCCCCCAACATTTAATATGTTTGCAATATGG
Found at i:561910 original size:72 final size:71
Alignment explanation
Indices: 561822--561960 Score: 210
Period size: 72 Copynumber: 1.9 Consensus size: 71
561812 GGTGAATAAG
*
561822 AAGAACGAAAGGAAGCATC-ATCACTTTCGATTCAAAGTGAACGGAGGGAA-GCATCGGCACTTT
1 AAGAACGAAAGGAAGCATCGA-CACTTTCGATTC-AAGTGAACGGA-AGAACGCATCGGCACTTT
561885 CGATTCAAA
63 CGATTCAAA
* *
561894 AAGAACGAAAGGAAGCATCGACACTTTTGATTCAAGTGAACGGAAGAACGCATCTGCACTTTCGA
1 AAGAACGAAAGGAAGCATCGACACTTTCGATTCAAGTGAACGGAAGAACGCATCGGCACTTTCGA
561959 TT
66 TT
561961 TAATTGTTCA
Statistics
Matches: 62, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
70 3 0.05
71 28 0.45
72 30 0.48
73 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (71 bp):
AAGAACGAAAGGAAGCATCGACACTTTCGATTCAAGTGAACGGAAGAACGCATCGGCACTTTCGA
TTCAAA
Found at i:561947 original size:35 final size:34
Alignment explanation
Indices: 561824--561960 Score: 132
Period size: 36 Copynumber: 3.8 Consensus size: 34
561814 TGAATAAGAA
* *
561824 GAACGAAAGGAAGCATCATCACTTTCGATTCAAAGT
1 GAACGGAA-GAAGCATC-GCACTTTCGATTCAAAGT
* **
561860 GAACGGAGGGAAGCATCGGCACTTTCGATTCAAAAA
1 GAACGGA-AGAAGCATC-GCACTTTCGATTCAAAGT
* *
561896 GAACGAAAGGAAGCATCGACACTTTTGATTC-AAGT
1 GAACGGAA-GAAGCATCG-CACTTTCGATTCAAAGT
561931 GAACGGAAGAACGCATCTGCACTTTCGATT
1 GAACGGAAGAA-GCATC-GCACTTTCGATT
561961 TAATTGTTCA
Statistics
Matches: 83, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
34 3 0.04
35 25 0.30
36 55 0.66
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (34 bp):
GAACGGAAGAAGCATCGCACTTTCGATTCAAAGT
Found at i:563241 original size:36 final size:37
Alignment explanation
Indices: 563190--563329 Score: 157
Period size: 36 Copynumber: 3.9 Consensus size: 37
563180 TGAATAAGAA
*
563190 GAACGAAAGGAAGCATC-ATCACTTTCGATTCAAAGT
1 GAACGGAAGGAAGCATCGATCACTTTCGATTCAAAGT
* * **
563226 GAATGGAAGGAAGCATCGGT-ACTTTCGATTCAAAAA
1 GAACGGAAGGAAGCATCGATCACTTTCGATTCAAAGT
* *
563262 GAACGAAAGGAAGCATCGA-CACTTTTGATTC-AAGT
1 GAACGGAAGGAAGCATCGATCACTTTCGATTCAAAGT
*
563297 GAACGGAAGAAAGCAT--ATGCACTTTCGATTCAA
1 GAACGGAAGGAAGCATCGAT-CACTTTCGATTCAA
563330 TTGTTCATCT
Statistics
Matches: 85, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
33 1 0.01
35 27 0.32
36 56 0.66
37 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (37 bp):
GAACGGAAGGAAGCATCGATCACTTTCGATTCAAAGT
Found at i:565238 original size:15 final size:15
Alignment explanation
Indices: 565218--565247 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
565208 TATCACAATC
565218 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
565233 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
565248 AGCACCGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (15 bp):
GCGCAGGATTCCGGG
Found at i:582133 original size:20 final size:21
Alignment explanation
Indices: 582105--582147 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
582095 CTTCCATCGT
* *
582105 TGATCATT-ATAGTGCTGATG
1 TGATAATTAATAGTGCTAATG
582125 TGATAATTAATAGTGCTAATG
1 TGATAATTAATAGTGCTAATG
582146 TG
1 TG
582148 GCAGTCAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (21 bp):
TGATAATTAATAGTGCTAATG
Found at i:582286 original size:23 final size:25
Alignment explanation
Indices: 582260--582313 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 25
582250 GTTCAAGGTC
**
582260 TTATTTATTTTTTA-AAATA-AAAA
1 TTATTTATTAATTATAAATATAAAA
582283 TTATTT-TTAATTATAAATATAAAA
1 TTATTTATTAATTATAAATATAAAA
582307 TTATTTA
1 TTATTTA
582314 AATATTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 5 0.19
23 11 0.42
24 10 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TTATTTATTAATTATAAATATAAAA
Found at i:582317 original size:16 final size:14
Alignment explanation
Indices: 582296--582379 Score: 64
Period size: 16 Copynumber: 5.6 Consensus size: 14
582286 TTTTTAATTA
582296 TAAATATAAAATTATT
1 TAAATATAAAA-TA-T
582312 TAAATATTTAAAA-AGT
1 TAAATA--TAAAATA-T
582328 TAAATATAAAAATAT
1 TAAATAT-AAAATAT
*
582343 TAAAAATAAAA-AT
1 TAAATATAAAATAT
*
582356 TAAATTACTAAAAAAT
1 TAAA-TA-TAAAATAT
582372 TAAATATA
1 TAAATATA
582380 CATATGATTT
Statistics
Matches: 58, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
13 6 0.10
14 8 0.14
15 18 0.31
16 21 0.36
18 5 0.09
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (14 bp):
TAAATATAAAATAT
Found at i:582368 original size:29 final size:29
Alignment explanation
Indices: 582320--582375 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
582310 TTTAAATATT
*
582320 TAAAAAGTTAAATATAAAAATATTAAAAA
1 TAAAAAGTTAAATATAAAAAAATTAAAAA
582349 TAAAAA-TTAAAT-TACTAAAAAATTAAA
1 TAAAAAGTTAAATATA--AAAAAATTAAA
582376 TATACATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 2 0.08
28 6 0.25
29 16 0.67
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (29 bp):
TAAAAAGTTAAATATAAAAAAATTAAAAA
Found at i:582951 original size:25 final size:25
Alignment explanation
Indices: 582893--582951 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
582883 ATTGTAAATT
582893 TCGACTAATCTAAAATTTATAACTC
1 TCGACTAATCTAAAATTTATAACTC
* * * *
582918 TCAACTAATTTAAATTTTATAAGTC
1 TCGACTAATCTAAAATTTATAACTC
*
582943 TCGATTAAT
1 TCGACTAAT
582952 ACAGTAAGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (25 bp):
TCGACTAATCTAAAATTTATAACTC
Found at i:589486 original size:20 final size:19
Alignment explanation
Indices: 589435--589489 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
589425 ACTATTGTGG
* *
589435 GTATCGATACTAAGCCTTCA
1 GTATCGATACTGA-CCTTAA
*
589455 GTATCGGTACTGACCTCTAA
1 GTATCGATACTGACCT-TAA
589475 GTATCGATACTGACC
1 GTATCGATACTGACC
589490 CTGGGTATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 3 0.10
20 27 0.90
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (19 bp):
GTATCGATACTGACCTTAA
Found at i:591878 original size:13 final size:12
Alignment explanation
Indices: 591854--591888 Score: 61
Period size: 13 Copynumber: 2.8 Consensus size: 12
591844 TAACAAAAGC
591854 AACAAAAAGAAA
1 AACAAAAAGAAA
591866 AACAAAGAAGAAA
1 AACAAA-AAGAAA
591879 AACAAAAAGA
1 AACAAAAAGA
591889 GAAAGAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.80, C:0.09, G:0.11, T:0.00
Consensus pattern (12 bp):
AACAAAAAGAAA
Found at i:599114 original size:24 final size:23
Alignment explanation
Indices: 599071--599117 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
599061 ACACATGAAT
*
599071 AAAATAAAATAAGTAAAAAAATG
1 AAAATAAAAAAAGTAAAAAAATG
599094 AAAATGAAAAAAAG-AATAAAAATG
1 AAAAT-AAAAAAAGTAA-AAAAATG
599118 GGGTTCAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (23 bp):
AAAATAAAAAAAGTAAAAAAATG
Found at i:602827 original size:16 final size:16
Alignment explanation
Indices: 602806--602851 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
602796 AATAAATGAA
602806 TATTTATTATATATTT
1 TATTTATTATATATTT
* *
602822 TATTTATTTTAGTATCT
1 TATTTATTATA-TATTT
602839 TA-TTATTA-ATATT
1 TATTTATTATATATT
602852 AATTATTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 3 0.12
15 1 0.04
16 15 0.60
17 6 0.24
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TATTTATTATATATTT
Found at i:604674 original size:16 final size:18
Alignment explanation
Indices: 604660--604696 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
604650 TGAATATTTG
604660 AATAA-TTTTATATTTAA
1 AATAACTTTTATATTTAA
*
604677 AATAACTTTTATTTTTAA
1 AATAACTTTTATATTTAA
604695 AA
1 AA
604697 AATTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (18 bp):
AATAACTTTTATATTTAA
Found at i:619318 original size:19 final size:21
Alignment explanation
Indices: 619273--619319 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
619263 GACTTATTAT
619273 TTTAAT-TAAGTCATCTCAAA
1 TTTAATATAAGTCATCTCAAA
* *
619293 ATAAATATAAGT-AT-TCAAA
1 TTTAATATAAGTCATCTCAAA
619312 TTTAATAT
1 TTTAATAT
619320 TTCTATAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 11 0.50
20 6 0.27
21 5 0.23
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (21 bp):
TTTAATATAAGTCATCTCAAA
Found at i:620951 original size:37 final size:37
Alignment explanation
Indices: 620905--621057 Score: 281
Period size: 37 Copynumber: 4.2 Consensus size: 37
620895 AATTCCATAA
*
620905 CACTT-TAATACATATAACACATGTAATATAATTGGT
1 CACTTATAATACATATAACACATGTAAAATAATTGGT
620941 CACTTATAATACATATAACACATGTAAAATAATTGGT
1 CACTTATAATACATATAACACATGTAAAATAATTGGT
*
620978 CACTTATAATACATATAACACATGTAATATAATTGGT
1 CACTTATAATACATATAACACATGTAAAATAATTGGT
621015 CACTTATAATACATATAACACATGTAAAATAATTGGT
1 CACTTATAATACATATAACACATGTAAAATAATTGGT
621052 CACTTA
1 CACTTA
621058 ATTTTATGTC
Statistics
Matches: 113, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
36 5 0.04
37 108 0.96
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (37 bp):
CACTTATAATACATATAACACATGTAAAATAATTGGT
Found at i:643006 original size:130 final size:134
Alignment explanation
Indices: 642850--643115 Score: 486
Period size: 130 Copynumber: 2.0 Consensus size: 134
642840 GATACATGTA
642850 TGTAACATAATTTCTTACGTAAGAGTATGTCATACTTTAAAATAACATTATATATCGTAC-A-TA
1 TGTAACATAATTTCTTACGTAAGAGTATGTCATACTTTAAAATAACATTATATATCGTACAACTA
642913 TCTACAATTACGACTTGTAATCTAACAGAGTTACAT-ATGGTAGCAGGACAAG-TTTCATTTGTT
66 TCTACAATTACGACTTGTAATCTAACAGAGTTACATAATGGTAGCAGGACAAGTTTTCATTTGTT
642976 TGTT
131 TGTT
642980 TGTAACATAATTTCTTACGTAAGAGTATGTCATACTTTAAAATAACATTATATATCGTACATATC
1 TGTAACATAATTTCTTACGTAAGAGTATGTCATACTTTAAAATAACATTATATATCGTACA-A-C
643045 TATCTACAATTACGACTTGTAATCTAACAGAGTTACATAATGGTAGCAGGACAAGTTTTCATTTG
64 TATCTACAATTACGACTTGTAATCTAACAGAGTTACATAATGGTAGCAGGACAAGTTTTCATTTG
643110 TTTGTT
129 TTTGTT
643116 CATGTGCTCC
Statistics
Matches: 130, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
130 60 0.46
132 1 0.01
134 38 0.29
135 16 0.12
136 15 0.12
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (134 bp):
TGTAACATAATTTCTTACGTAAGAGTATGTCATACTTTAAAATAACATTATATATCGTACAACTA
TCTACAATTACGACTTGTAATCTAACAGAGTTACATAATGGTAGCAGGACAAGTTTTCATTTGTT
TGTT
Found at i:645216 original size:51 final size:51
Alignment explanation
Indices: 645156--645285 Score: 154
Period size: 51 Copynumber: 2.5 Consensus size: 51
645146 GTAGCAGTAA
* * * ** *
645156 AGCGCGCCCCCTGAACCGCACTATATGTTGATTTGG-CGCCACGTGGGGTAT
1 AGCGCGCCCCCTGAACCGCGCTATACGCTGACATGGACGACACGT-GGGTAT
* **
645207 AGCGCGCCCCCTGCACCGCGCTATACGCTGACATGGATTACACGTGGGTAT
1 AGCGCGCCCCCTGAACCGCGCTATACGCTGACATGGACGACACGTGGGTAT
*
645258 AGCGCGCCCCCTGATCCGCGCTATACGC
1 AGCGCGCCCCCTGAACCGCGCTATACGC
645286 CACGTAGGGG
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
51 62 0.93
52 5 0.07
ACGTcount: A:0.18, C:0.35, G:0.28, T:0.20
Consensus pattern (51 bp):
AGCGCGCCCCCTGAACCGCGCTATACGCTGACATGGACGACACGTGGGTAT
Found at i:648967 original size:33 final size:36
Alignment explanation
Indices: 648915--648993 Score: 103
Period size: 36 Copynumber: 2.2 Consensus size: 36
648905 ATTTGGTATT
648915 TAAATACAACAAACTTACAATAA-GA-ATTAAATGG
1 TAAATACAACAAACTTACAATAACGATATTAAATGG
648949 TAAATA-AACCAAA-TTACAATAACTGATATTAAATGG
1 TAAATACAA-CAAACTTACAATAAC-GATATTAAATGG
*
648985 TAAAAACAA
1 TAAATACAA
648994 AATTAACTGA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
33 11 0.28
34 10 0.26
35 2 0.05
36 14 0.36
37 2 0.05
ACGTcount: A:0.57, C:0.11, G:0.08, T:0.24
Consensus pattern (36 bp):
TAAATACAACAAACTTACAATAACGATATTAAATGG
Found at i:651325 original size:17 final size:18
Alignment explanation
Indices: 651282--651322 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
651272 GAATTATATT
651282 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
651299 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
*
651317 ATTAAA
1 AGTAAA
651323 TACATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:654062 original size:34 final size:35
Alignment explanation
Indices: 654016--654089 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
654006 TGAATTTTAT
*
654016 ATCTATTATATTG-AAAGTATCTTATATTCTACAA
1 ATCTATTATATTGAAAAATATCTTATATTCTACAA
* *
654050 ATCTATTTTATTGAAAAATATTTTATATTCTACAA
1 ATCTATTATATTGAAAAATATCTTATATTCTACAA
654085 ATCTA
1 ATCTA
654090 GCATAGAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
34 12 0.33
35 24 0.67
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (35 bp):
ATCTATTATATTGAAAAATATCTTATATTCTACAA
Found at i:655532 original size:31 final size:31
Alignment explanation
Indices: 655497--655556 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
655487 TAGTTTAACG
* * *
655497 TAAAATATAAATATTAAATTGATATTTTATT
1 TAAAATATAAAGATCAAATTAATATTTTATT
* *
655528 TAAAATTTATAGATCAAATTAATATTTTA
1 TAAAATATAAAGATCAAATTAATATTTTA
655557 ATTATTGTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (31 bp):
TAAAATATAAAGATCAAATTAATATTTTATT
Found at i:657161 original size:18 final size:18
Alignment explanation
Indices: 657105--657162 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
657095 AATATATATT
*
657105 TAAAACTAAAGAT-AAATA
1 TAAAAATAAA-ATAAAATA
*
657123 -AATAAATAAATTAAAGA-A
1 TAA-AAATAAAATAAA-ATA
657141 TAAAAATAAAATAAAATA
1 TAAAAATAAAATAAAATA
657159 TAAA
1 TAAA
657163 GTAATAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
17 4 0.12
18 25 0.78
19 3 0.09
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.22
Consensus pattern (18 bp):
TAAAAATAAAATAAAATA
Found at i:657184 original size:26 final size:25
Alignment explanation
Indices: 657122--657174 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
657112 AAAGATAAAT
657122 AAAT-AAAT-AAAT-TAAAGAATAA
1 AAATAAAATAAAATATAAAGAATAA
657144 AAATAAAATAAAATATAAAGTAATAA
1 AAATAAAATAAAATATAAAG-AATAA
657170 AAATA
1 AAATA
657175 TATACAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 4 0.15
23 4 0.15
24 4 0.15
25 5 0.19
26 10 0.37
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.23
Consensus pattern (25 bp):
AAATAAAATAAAATATAAAGAATAA
Found at i:678772 original size:75 final size:75
Alignment explanation
Indices: 678685--678824 Score: 187
Period size: 75 Copynumber: 1.9 Consensus size: 75
678675 ACAAATTTTA
* * *
678685 TCACTTGAGATAGTTTTTCTT-AAAACAAAATTTC-TCTCGCTCGAGAC-AGTTTCTCTTGAAAC
1 TCACTTAAGATAGTTTTCCTTAAAAAC-AAATTTCGTCTCACTCGAGACTA-TTTC-CTTGAAAC
678747 AAATTTTTTTATC
63 AAATTTTTTTATC
* *
678760 TCACTTAAGATAGTTTTCCTTAAAAACAAATTTCGTGTCACTTGAGACTATTTCCTTGAAACAAA
1 TCACTTAAGATAGTTTTCCTTAAAAACAAATTTCGTCTCACTCGAGACTATTTCCTTGAAACAAA
678825 AATTACATCT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
75 37 0.65
76 19 0.33
77 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.39
Consensus pattern (75 bp):
TCACTTAAGATAGTTTTCCTTAAAAACAAATTTCGTCTCACTCGAGACTATTTCCTTGAAACAAA
TTTTTTTATC
Found at i:678851 original size:37 final size:36
Alignment explanation
Indices: 678757--678857 Score: 98
Period size: 37 Copynumber: 2.7 Consensus size: 36
678747 AAATTTTTTT
* *
678757 ATCTCACTTAAGATAGTTTTCCTTAAAAACAAATTTC
1 ATCTCACTTGAGATA-TTTTCCTTAAAAACAAATTAC
* *
678794 GTGTCACTTGAGACTA-TTTCCTTGAAACAA-AAATTAC
1 ATCTCACTTGAGA-TATTTTCCTT-AAA-AACAAATTAC
*
678831 ATCTCACTTGATATATTTTCCCTTAAA
1 ATCTCACTTGAGATATTTT-CCTTAAA
678858 TTTTTTTGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
36 9 0.17
37 35 0.67
38 8 0.15
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.38
Consensus pattern (36 bp):
ATCTCACTTGAGATATTTTCCTTAAAAACAAATTAC
Found at i:678956 original size:55 final size:56
Alignment explanation
Indices: 678889--678997 Score: 150
Period size: 55 Copynumber: 1.9 Consensus size: 56
678879 AGTTTCTCTC
* * * *
678889 GAAACAATATTTCATCTCAC-TTGAGTATTTTCCCTTTAAAA-TTTTCATCTTATTA
1 GAAACAAAATTTCATCCCACTTTGA-TATTTTCCCTTGAAAACTCTTCATCTTATTA
678944 GAAACAAAATTTCATCCCACTTTTGATATTTTCCCTTGAAAACTCTTCATCTTA
1 GAAACAAAATTTCATCCCAC-TTTGATATTTTCCCTTGAAAACTCTTCATCTTA
678998 CTCGAGACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
55 18 0.38
56 15 0.32
57 14 0.30
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (56 bp):
GAAACAAAATTTCATCCCACTTTGATATTTTCCCTTGAAAACTCTTCATCTTATTA
Found at i:679010 original size:55 final size:54
Alignment explanation
Indices: 678889--679012 Score: 135
Period size: 55 Copynumber: 2.2 Consensus size: 54
678879 AGTTTCTCTC
* * * *
678889 GAAACAATATTTCATCTCACTTGAGTATTTTCCCTTTAAAATTTTCATCTTATTA
1 GAAACAA-ATTTCATCCCACTTGAGTATTTTCCCTTGAAAATCTTCATCTTACTA
*
678944 GAAACAAAATTTCATCCCACTTTTGA-TATTTTCCCTTGAAAACTCTTCATCTTACTC
1 GAAAC-AAATTTCATCCCAC--TTGAGTATTTTCCCTTGAAAA-TCTTCATCTTACTA
*
679001 GAGAC-AATTTCA
1 GAAACAAATTTCA
679013 CTAGAAATAA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
55 23 0.39
56 17 0.29
57 19 0.32
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.40
Consensus pattern (54 bp):
GAAACAAATTTCATCCCACTTGAGTATTTTCCCTTGAAAATCTTCATCTTACTA
Found at i:682060 original size:21 final size:21
Alignment explanation
Indices: 682036--682076 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
682026 CAATCATGGG
*
682036 TATTCAATGTTGAATTTTAAT
1 TATTCAATGCTGAATTTTAAT
*
682057 TATTGAATGCTGAATTTTAA
1 TATTCAATGCTGAATTTTAA
682077 GTTGGAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (21 bp):
TATTCAATGCTGAATTTTAAT
Found at i:686532 original size:17 final size:17
Alignment explanation
Indices: 686490--686534 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
686480 AAATTACAAA
*
686490 AAAATATAACTTAATTTC
1 AAAATATAA-TTAATGTC
* *
686508 CAATTATAATTAATGTC
1 AAAATATAATTAATGTC
686525 AAAATATAAT
1 AAAATATAAT
686535 AAGTCAAGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (17 bp):
AAAATATAATTAATGTC
Found at i:689376 original size:32 final size:32
Alignment explanation
Indices: 689340--689546 Score: 396
Period size: 32 Copynumber: 6.5 Consensus size: 32
689330 GTATAAGGAA
* *
689340 AAGCATATTAATATAAGGCTTAACCGAAATAT
1 AAGCATATTAATATAGGGTTTAACCGAAATAT
689372 AAGCATATTAATATAGGGTTTAACCGAAATAT
1 AAGCATATTAATATAGGGTTTAACCGAAATAT
689404 AAGCATATTAATATAGGGTTTAACCGAAATAT
1 AAGCATATTAATATAGGGTTTAACCGAAATAT
689436 AAGCATATTAATATAGGGTTTAACCGAAATAT
1 AAGCATATTAATATAGGGTTTAACCGAAATAT
689468 AAGCATATTAATATAGGGTTTAACCGAAATAT
1 AAGCATATTAATATAGGGTTTAACCGAAATAT
689500 AAGCATATTAATATAGGGTTTAACCGAAATAT
1 AAGCATATTAATATAGGGTTTAACCGAAATAT
689532 AAGCATATTAATATA
1 AAGCATATTAATATA
689547 AAAAGCGGTG
Statistics
Matches: 173, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 173 1.00
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (32 bp):
AAGCATATTAATATAGGGTTTAACCGAAATAT
Found at i:694152 original size:20 final size:20
Alignment explanation
Indices: 694129--694167 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
694119 TGTTTTTCAT
694129 ATTTTAAA-AGCTTTAAACAC
1 ATTTTAAACA-CTTTAAACAC
694149 ATTTTAAACACTTTAAACA
1 ATTTTAAACACTTTAAACA
694168 TAAATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (20 bp):
ATTTTAAACACTTTAAACAC
Found at i:699774 original size:73 final size:73
Alignment explanation
Indices: 699664--699858 Score: 205
Period size: 73 Copynumber: 2.7 Consensus size: 73
699654 GTTTAAGATC
** * *
699664 TAAAAGTATCGATCATCATAGCATAAATATCAATATTTTAAATTTTGATCTT-TTTATCAACTTT
1 TAAAAGTATCGAAAATCATAGCATAAATATCAATATTTTAAATTTCGATCTTATCT-TCAACTTT
* *
699728 TTTAATTTT
65 TTCAATATT
* * * **
699737 TAAAAGTATCGAAAATTATCGCATAAGTATTGATATTTTAAATTTCGATCTTATCTTCAACTTTT
1 TAAAAGTATCGAAAATCATAGCATAAATATCAATATTTTAAATTTCGATCTTATCTTCAACTTTT
699802 TCAATATT
66 TCAATATT
* * * * * *
699810 TAAAATTATCGATAATAATA-TATTAAGTATCAATATTTAAAATTTCGAT
1 TAAAAGTATCGAAAATCATAGCA-TAAATATCAATATTTTAAATTTCGAT
699859 ATGTTTTTTT
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
72 1 0.01
73 98 0.97
74 2 0.02
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (73 bp):
TAAAAGTATCGAAAATCATAGCATAAATATCAATATTTTAAATTTCGATCTTATCTTCAACTTTT
TCAATATT
Found at i:701016 original size:2 final size:2
Alignment explanation
Indices: 701011--701061 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
701001 CACATGTATG
701011 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
701053 TA TA T- TA TA
1 TA TA TA TA TA
701062 ATTAAACTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:702142 original size:20 final size:19
Alignment explanation
Indices: 702117--702168 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
702107 GCGAAATAAA
702117 AATCGCAACGCGATCTCCAG
1 AATCGCAACGCGATC-CCAG
** *
702137 AATCGCAAATCAGTTCCCAG
1 AATCGCAACGC-GATCCCAG
702157 AATCGCAACGCG
1 AATCGCAACGCG
702169 CGAATATGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.04
20 22 0.85
21 3 0.12
ACGTcount: A:0.33, C:0.33, G:0.19, T:0.15
Consensus pattern (19 bp):
AATCGCAACGCGATCCCAG
Found at i:702244 original size:20 final size:20
Alignment explanation
Indices: 702204--702371 Score: 176
Period size: 20 Copynumber: 8.3 Consensus size: 20
702194 CTGACTATCA
702204 CAACGAGTATCCGTAAAATCG
1 CAACGAGTATCCGT-AAATCG
*
702225 CAACGTGTATCCGTAAATCG
1 CAACGAGTATCCGTAAATCG
* ** *
702245 CAACTACAATACGTAAAATCG
1 CAACGAGTATCCGT-AAATCG
702266 CAACGCA-TATCCGTAAATCG
1 CAACG-AGTATCCGTAAATCG
* * *
702286 TAACGAGAATACGTAAATCG
1 CAACGAGTATCCGTAAATCG
* *
702306 CAACGCGTATCTGTAAATCG
1 CAACGAGTATCCGTAAATCG
* *
702326 CAACGAGAATACGTAAATCG
1 CAACGAGTATCCGTAAATCG
* *
702346 CAATGCGTATCCGTAAATCG
1 CAACGAGTATCCGTAAATCG
702366 CAACGA
1 CAACGA
702372 CAATACGTTT
Statistics
Matches: 117, Mismatches: 27, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
19 1 0.01
20 87 0.74
21 28 0.24
22 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (20 bp):
CAACGAGTATCCGTAAATCG
Found at i:702322 original size:40 final size:41
Alignment explanation
Indices: 702204--702379 Score: 248
Period size: 40 Copynumber: 4.3 Consensus size: 41
702194 CTGACTATCA
* * *
702204 CAACGAGTATCCGTAAAATCGCAACGTGTATCCGTAAATCG
1 CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
* * *
702245 CAACTACAATACGTAAAATCGCAACGCATATCCGTAAATCG
1 CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
* *
702286 TAACGAGAATACGT-AAATCGCAACGCGTATCTGTAAATCG
1 CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
*
702326 CAACGAGAATACGT-AAATCGCAATGCGTATCCGTAAATCG
1 CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
*
702366 CAACGACAATACGT
1 CAACGAGAATACGT
702380 TTGACGACAG
Statistics
Matches: 120, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 74 0.62
41 46 0.38
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (41 bp):
CAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCG
Found at i:702770 original size:14 final size:14
Alignment explanation
Indices: 702751--702786 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
702741 ATTGTTTAAT
702751 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
702765 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
702779 TGATTTGT
1 TGATTTGT
702787 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:702909 original size:20 final size:21
Alignment explanation
Indices: 702879--702918 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
702869 GTTGAATGCA
702879 AAATAGACTATCGCAACGCGG
1 AAATAGACTATCGCAACGCGG
702900 AAAT-GACTATCGCAACGCG
1 AAATAGACTATCGCAACGCG
702919 AATTTGGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.15
Consensus pattern (21 bp):
AAATAGACTATCGCAACGCGG
Found at i:703856 original size:2 final size:2
Alignment explanation
Indices: 703851--703904 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
703841 AATTACAATA
703851 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
703893 AT AT AT AT AT AT
1 AT AT AT AT AT AT
703905 GAGTCAGATT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:709067 original size:18 final size:18
Alignment explanation
Indices: 709020--709060 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
709010 AGGCATTTGA
*
709020 TCCTCTGGTCGTGCTTGT
1 TCCTCTGGTTGTGCTTGT
709038 TCCTCTGGTTGTGCTTGT
1 TCCTCTGGTTGTGCTTGT
709056 TCCTC
1 TCCTC
709061 GTGTTGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.00, C:0.29, G:0.24, T:0.46
Consensus pattern (18 bp):
TCCTCTGGTTGTGCTTGT
Found at i:710655 original size:23 final size:22
Alignment explanation
Indices: 710620--710679 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 22
710610 GGGGTATCTA
* *
710620 TTCCCCTACAAGGGGGAATCGG
1 TTCCCCTTCAAGGGGAAATCGG
710642 TTCCCCTTCAAAGGGGAAATCGG
1 TTCCCCTTC-AAGGGGAAATCGG
**
710665 TTATCCTTCAAGGGG
1 TTCCCCTTCAAGGGG
710680 TATCGATTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 14 0.42
23 19 0.58
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (22 bp):
TTCCCCTTCAAGGGGAAATCGG
Found at i:710940 original size:20 final size:20
Alignment explanation
Indices: 710893--710941 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
710883 TACAATCAAA
* *
710893 ATTTATTATAAGCATTTTTC
1 ATTTATTCTAAGAATTTTTC
710913 ATTTATTCTAAGAATTTTTC
1 ATTTATTCTAAGAATTTTTC
710933 ATTTATTCT
1 ATTTATTCT
710942 TAAAAGTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.57
Consensus pattern (20 bp):
ATTTATTCTAAGAATTTTTC
Found at i:716519 original size:20 final size:21
Alignment explanation
Indices: 716481--716523 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
716471 AAACCATTCA
716481 GGGGGAATCGGTACCCCCTTGG
1 GGGGGAATCGGTA-CCCCTTGG
* *
716503 GGGGGAATCGGTTCCCTTTGG
1 GGGGGAATCGGTACCCCTTGG
716524 ACAATCTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.12, C:0.23, G:0.42, T:0.23
Consensus pattern (21 bp):
GGGGGAATCGGTACCCCTTGG
Found at i:717892 original size:23 final size:23
Alignment explanation
Indices: 717865--717927 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
717855 CATTTTATAT
*
717865 GGCACTTCGATGCATTTCTACGC
1 GGCACTTCGATGCATTTCTACAC
* * * * * *
717888 GGCACTTTGGTACAATCCTACAT
1 GGCACTTCGATGCATTTCTACAC
717911 GGCACTTCGATGCATTT
1 GGCACTTCGATGCATTT
717928 ATTCGAGCTG
Statistics
Matches: 28, Mismatches: 12, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.32
Consensus pattern (23 bp):
GGCACTTCGATGCATTTCTACAC
Found at i:718234 original size:6 final size:6
Alignment explanation
Indices: 718220--718253 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
718210 GTTGGCATGA
*
718220 TATGTG TATGCG TATGCG TATGCG TATGCG TATG
1 TATGCG TATGCG TATGCG TATGCG TATGCG TATG
718254 AGTTTGATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.12, G:0.32, T:0.38
Consensus pattern (6 bp):
TATGCG
Found at i:727327 original size:36 final size:36
Alignment explanation
Indices: 727279--727358 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
727269 CGAGAAAGAA
*
727279 CCGGACAACCAAAGCTATGTAGTATTTGTAGGAATC
1 CCGGACACCCAAAGCTATGTAGTATTTGTAGGAATC
727315 CCGGACACCCAAAGCTATGTAGTATTTGTAGGAATC
1 CCGGACACCCAAAGCTATGTAGTATTTGTAGGAATC
727351 CCGGACAC
1 CCGGACAC
727359 ACGAAAAACA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (36 bp):
CCGGACACCCAAAGCTATGTAGTATTTGTAGGAATC
Found at i:729538 original size:6 final size:6
Alignment explanation
Indices: 729527--729562 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
729517 TTTCTGTCCT
729527 TATCCC TATCCC TATCCC TATCCC TATCCC TATCCC
1 TATCCC TATCCC TATCCC TATCCC TATCCC TATCCC
729563 GTCACATTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (6 bp):
TATCCC
Found at i:732942 original size:111 final size:111
Alignment explanation
Indices: 732809--733030 Score: 401
Period size: 111 Copynumber: 2.0 Consensus size: 111
732799 ATTACAAAAA
*
732809 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATAAACTAATTATTACTAATAATTTAAATTA
* *
732874 AATTAAAACGTTAAAATGTTACCGTATCAGC-AAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATATTACCGTATCA-CTAAAGTGTAGAGATAT
732920 TTAATTCTTAATCTAATAATCATGCATTAAATAAATAAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATAAACTAATTATTACTAATAATTTAAATTA
732985 AATTAAAACGTTAAAATATTACCGTATCACTAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATATTACCGTATCACTAAAGTGTAGAGATAT
733031 ATGATTTTCA
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
110 1 0.01
111 106 0.99
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATAAACTAATTATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATATTACCGTATCACTAAAGTGTAGAGATAT
Found at i:733135 original size:17 final size:18
Alignment explanation
Indices: 733094--733132 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
733084 ATTATATTAG
733094 TAAAATA-TTAAATAAAA
1 TAAAATACTTAAATAAAA
*
733111 TAAAATACTTAAATAAAT
1 TAAAATACTTAAATAAAA
733129 TAAA
1 TAAA
733133 TACATAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATACTTAAATAAAA
Found at i:733850 original size:22 final size:22
Alignment explanation
Indices: 733793--733851 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
733783 ACGCAATTCT
733793 GACTATCGCATTGCGATTTTCC
1 GACTATCGCATTGCGATTTTCC
* * *
733815 AAAT-TCGCGTTGCGATTTTCC
1 GACTATCGCATTGCGATTTTCC
*
733836 GACTATCGCAATGCGA
1 GACTATCGCATTGCGA
733852 ATATGTAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
GACTATCGCATTGCGATTTTCC
Found at i:733901 original size:20 final size:20
Alignment explanation
Indices: 733865--733902 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
733855 TGTAAATCGC
*
733865 AATGTGATTATGCCTATCAT
1 AATGTGATTATGACTATCAT
*
733885 AATGTGATTCTGACTATC
1 AATGTGATTATGACTATC
733903 GCAACGCGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (20 bp):
AATGTGATTATGACTATCAT
Found at i:733913 original size:20 final size:20
Alignment explanation
Indices: 733890--733949 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
733880 ATCATAATGT
*
733890 GATTCTGACTATCGCAACGC
1 GATTCTGACTATCGCAACAC
* *
733910 GATTATGACTGTCGCAACAC
1 GATTCTGACTATCGCAACAC
* *
733930 GATTCTGACTGTCGTAACAC
1 GATTCTGACTATCGCAACAC
733950 TGAATTTCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (20 bp):
GATTCTGACTATCGCAACAC
Found at i:737417 original size:140 final size:140
Alignment explanation
Indices: 737165--737432 Score: 527
Period size: 140 Copynumber: 1.9 Consensus size: 140
737155 ACGTTGTATT
737165 ATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTATG
1 ATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTATG
737230 ATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTATTA
66 ATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTATTA
737295 TGTGTACTTC
131 TGTGTACTTC
737305 ATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTATG
1 ATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTATG
*
737370 ATATGTTCAGTTGTTATCACTTATTACATATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 ATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
737433 CGTAACGCGA
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 127 1.00
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (140 bp):
ATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTATG
ATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTATTA
TGTGTACTTC
Found at i:737428 original size:20 final size:20
Alignment explanation
Indices: 737403--737681 Score: 245
Period size: 20 Copynumber: 14.8 Consensus size: 20
737393 TTACATATTC
*
737403 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
737423 ATTTGACTATCGTAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
737443 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
* * *
737462 A----A-AACCGCAATGCGA
1 ATTTGACTATCGCAACGCGA
737477 ATTTGACTATCGCAACGC-A
1 ATTTGACTATCGCAACGCGA
* *
737496 A----A-AATTGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
737511 ATTTGTCTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
737531 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
737551 ATTTGATTATCGCAACG-GCT
1 ATTTGACTATCGCAACGCG-A
*
737571 ATTTGACTATCGCAACGAGA
1 ATTTGACTATCGCAACGCGA
737591 A----A--ATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
737605 ATTTGACTATCGCAAAGTGA
1 ATTTGACTATCGCAACGCGA
*
737625 ATTTGAGTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
737645 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
737665 ATTTGACTATCGCAACG
1 ATTTGACTATCGCAACG
737682 AGAAAATCGC
Statistics
Matches: 207, Mismatches: 32, Indels: 40
0.74 0.11 0.14
Matches are distributed among these distances:
14 28 0.14
15 6 0.03
16 1 0.00
18 1 0.00
19 6 0.03
20 164 0.79
21 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:737482 original size:34 final size:34
Alignment explanation
Indices: 737436--737567 Score: 131
Period size: 34 Copynumber: 3.7 Consensus size: 34
737426 TGACTATCGT
*
737436 AACGCGAATTTGATTATCGCAACTCAAAAACCGC
1 AACGCGAATTTGATTATCGCAACGCAAAAACCGC
* * **
737470 AATGCGAATTTGACTATCGCAACGCAAAAATTGC
1 AACGCGAATTTGATTATCGCAACGCAAAAACCGC
* *
737504 AACGCGAATTTG-TCTATCGCAACGCGAATTTGACTATCGC
1 AACGCGAATTTGAT-TATCGCAACGC-AA----A-AACCGC
737544 AACGCGAATTTGATTATCGCAACG
1 AACGCGAATTTGATTATCGCAACG
737568 GCTATTTGAC
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
34 51 0.63
35 2 0.02
39 1 0.01
40 26 0.32
41 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (34 bp):
AACGCGAATTTGATTATCGCAACGCAAAAACCGC
Found at i:737597 original size:54 final size:54
Alignment explanation
Indices: 737539--737641 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
737529 GAATTTGACT
* * *
737539 ATCGCAACGCGAATTTGATTATCGCAACG-GCTATTTGACTATCGCAACGAGAAA
1 ATCGCAACGCGAATTTGACTATCGCAAAGTG-AATTTGACTATCGCAACGAGAAA
*
737593 ATCGCAACGCGAATTTGACTATCGCAAAGTGAATTTGAGTATCGCAACG
1 ATCGCAACGCGAATTTGACTATCGCAAAGTGAATTTGACTATCGCAACG
737642 CGAATTTGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 43 0.98
55 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (54 bp):
ATCGCAACGCGAATTTGACTATCGCAAAGTGAATTTGACTATCGCAACGAGAAA
Found at i:737597 original size:74 final size:74
Alignment explanation
Indices: 737519--737661 Score: 225
Period size: 74 Copynumber: 1.9 Consensus size: 74
737509 GAATTTGTCT
* * *
737519 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACG-GCTATTTGACTATCG
1 ATCGCAACGCGAATTTGACTATCGCAAAGCGAATTTGAGTATCGCAACGCG-AATTTGACTATCG
737583 CAACGAGAAA
65 CAACGAGAAA
* *
737593 ATCGCAACGCGAATTTGACTATCGCAAAGTGAATTTGAGTATCGCAACGCGAATTTGATTATCGC
1 ATCGCAACGCGAATTTGACTATCGCAAAGCGAATTTGAGTATCGCAACGCGAATTTGACTATCGC
737658 AACG
66 AACG
737662 GGTATTTGAC
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 62 0.98
75 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (74 bp):
ATCGCAACGCGAATTTGACTATCGCAAAGCGAATTTGAGTATCGCAACGCGAATTTGACTATCGC
AACGAGAAA
Found at i:737936 original size:14 final size:14
Alignment explanation
Indices: 737876--737937 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
737866 CACAAATAAG
*
737876 AATTATTTACACATC
1 AATT-TTTACAAATC
**
737891 AATATTAAACAAATC
1 AAT-TTTTACAAATC
*
737906 AACTTTTACAAATC
1 AATTTTTACAAATC
*
737920 AATTTTTATAAATC
1 AATTTTTACAAATC
737934 AATT
1 AATT
737938 AAACAAGCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 25 0.66
15 12 0.32
16 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTTTTACAAATC
Found at i:739364 original size:21 final size:21
Alignment explanation
Indices: 739334--739435 Score: 71
Period size: 21 Copynumber: 4.9 Consensus size: 21
739324 TAGGAGGGAT
* *
739334 CTCTTCAACGATGACAGTGGC
1 CTCTTGAACGATGACAGGGGC
* ** *
739355 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGATGACAGGGGC
** *
739376 CTCTTGAGGGATGATAGGGGC
1 CTCTTGAACGATGACAGGGGC
* * *
739397 CACTTGAACGAT-AGGAGAGGC
1 CTCTTGAACGATGA-CAGGGGC
*
739418 CTCTTAAACGATGACAGG
1 CTCTTGAACGATGACAGG
739436 TGAGTCGGGC
Statistics
Matches: 58, Mismatches: 21, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
20 1 0.02
21 56 0.97
22 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (21 bp):
CTCTTGAACGATGACAGGGGC
Found at i:739431 original size:42 final size:42
Alignment explanation
Indices: 739324--739435 Score: 109
Period size: 42 Copynumber: 2.7 Consensus size: 42
739314 TCTAGAATGT
* * * *
739324 TAGGAG-GGATCTCTTCAACGATGACAGTGGCCTCTTGAACGG
1 TAGGAGAGGA-CTCTTAAACGATGACAGGGGCCACTTGAACGA
* * * ** *
739366 TGGGAGGGGACTCTTGAGGGATGATAGGGGCCACTTGAACGA
1 TAGGAGAGGACTCTTAAACGATGACAGGGGCCACTTGAACGA
*
739408 TAGGAGAGGCCTCTTAAACGATGACAGG
1 TAGGAGAGGACTCTTAAACGATGACAGG
739436 TGAGTCGGGC
Statistics
Matches: 54, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
42 51 0.94
43 3 0.06
ACGTcount: A:0.26, C:0.18, G:0.36, T:0.21
Consensus pattern (42 bp):
TAGGAGAGGACTCTTAAACGATGACAGGGGCCACTTGAACGA
Found at i:739944 original size:18 final size:18
Alignment explanation
Indices: 739921--739987 Score: 80
Period size: 20 Copynumber: 3.5 Consensus size: 18
739911 GAAACTTAAA
*
739921 ATCGCAACACGAATGACT
1 ATCGCAACGCGAATGACT
739939 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCG--AATGACT
*
739959 ATCACAACGCGAATTTGACT
1 ATCGCAACGCGAA--TGACT
739979 ATCGCAACG
1 ATCGCAACG
739988 AGAGAATCGC
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
18 12 0.29
20 30 0.71
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.18
Consensus pattern (18 bp):
ATCGCAACGCGAATGACT
Found at i:739957 original size:20 final size:20
Alignment explanation
Indices: 739932--739987 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
739922 TCGCAACACG
739932 AATGACTATCGCAACGCGAA
1 AATGACTATCGCAACGCGAA
*
739952 AATGACTATCACAACGCGAA
1 AATGACTATCGCAACGCGAA
**
739972 TTTGACTATCGCAACG
1 AATGACTATCGCAACG
739988 AGAGAATCGC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
AATGACTATCGCAACGCGAA
Found at i:740055 original size:20 final size:20
Alignment explanation
Indices: 740030--740073 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
740020 GCGATTCTTT
740030 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
740050 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
740070 CGTT
1 CGTT
740074 ACGAAAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.41
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:740248 original size:18 final size:18
Alignment explanation
Indices: 740225--740274 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
740215 TTTACTAAGC
740225 AATCTAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
*
740243 AATCTAAGTGAAACGGTT
1 AATCTAAGTGAAATGGTT
740261 AATCTAAGTGAAAT
1 AATCTAAGTGAAAT
740275 TACGAGTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (18 bp):
AATCTAAGTGAAATGGTT
Found at i:741845 original size:19 final size:20
Alignment explanation
Indices: 741786--741872 Score: 115
Period size: 20 Copynumber: 4.5 Consensus size: 20
741776 TCTGAAACTT
741786 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
741806 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** *
741826 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
* *
741845 AAAATCGCAACGCGAAACT-
1 AAAATCGCAACACGAAAATG
741864 AAAATCGCA
1 AAAATCGCA
741873 TTGCGATTCT
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
19 26 0.43
20 34 0.57
ACGTcount: A:0.49, C:0.23, G:0.16, T:0.11
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:742285 original size:22 final size:22
Alignment explanation
Indices: 742258--742299 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
742248 GAGATAGACA
742258 GATTTCGCCGGAGATGGGGAAT
1 GATTTCGCCGGAGATGGGGAAT
*
742280 GATTTCGTCGGAGATGGGGA
1 GATTTCGCCGGAGATGGGGA
742300 CAGATGTCGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.12, G:0.43, T:0.24
Consensus pattern (22 bp):
GATTTCGCCGGAGATGGGGAAT
Found at i:742507 original size:20 final size:20
Alignment explanation
Indices: 742475--742588 Score: 156
Period size: 20 Copynumber: 5.7 Consensus size: 20
742465 GCGCTTTGAA
* *
742475 AATCGCATTGCGATAGTTAG
1 AATCGCGTTGCGATAGTCAG
* * *
742495 CATTGCGTTGCGACAGTCAG
1 AATCGCGTTGCGATAGTCAG
742515 AATCGCGTTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
*
742535 AATCTCGTTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
*
742555 AATCGCGTTGCGATAGTCAT
1 AATCGCGTTGCGATAGTCAG
*
742575 AATCGCATTGCGAT
1 AATCGCGTTGCGAT
742589 TTACATATTC
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 82 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (20 bp):
AATCGCGTTGCGATAGTCAG
Found at i:742606 original size:60 final size:60
Alignment explanation
Indices: 742475--742612 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 60
742465 GCGCTTTGAA
* * * *
742475 AATCGCATTGCGATAGTTAGCATTGCGTTGCGACAGTCAGAATCGCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAGAATCGCGTTGCGACAGTCAGAATCGCATTGCGATAGTCAG
* * * * * *
742535 AATCTCGTTGCGATAGTCAGAATCGCGTTGCGATAGTCATAATCGCATTGCGAT-TTACAT
1 AATCGCATTGCGATAGTCAGAATCGCGTTGCGACAGTCAGAATCGCATTGCGATAGT-CAG
*
742595 ATTCGCATTGCGATAGTC
1 AATCGCATTGCGATAGTC
742613 GGAAAATCGC
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
59 1 0.02
60 63 0.98
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (60 bp):
AATCGCATTGCGATAGTCAGAATCGCGTTGCGACAGTCAGAATCGCATTGCGATAGTCAG
Found at i:742639 original size:21 final size:21
Alignment explanation
Indices: 742613--742671 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
742603 TGCGATAGTC
742613 GGAAAATCGCAACGCGAATTT
1 GGAAAATCGCAACGCGAATTT
*
742634 GGAAAATCGCAACGTGAATTT
1 GGAAAATCGCAACGCGAATTT
*
742655 GGAAAATCGCAATGCGA
1 GGAAAATCGCAACGCGA
742672 TAGTCAGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.39, C:0.17, G:0.25, T:0.19
Consensus pattern (21 bp):
GGAAAATCGCAACGCGAATTT
Found at i:743236 original size:92 final size:92
Alignment explanation
Indices: 743079--743262 Score: 359
Period size: 92 Copynumber: 2.0 Consensus size: 92
743069 TTTTCTCCCT
*
743079 TCAGTTTGAAAAGCCTCTCTTTCCCTTCCTAAAAGTCAACGCCTTTTTCTTCTTCTTCCCCTTGC
1 TCAGTTTGAAAAGCCTCTCTTTCCCTTCCCAAAAGTCAACGCCTTTTTCTTCTTCTTCCCCTTGC
743144 TTCTTATTTTCTTTCTCATTTCCCTGA
66 TTCTTATTTTCTTTCTCATTTCCCTGA
743171 TCAGTTTGAAAAGCCTCTCTTTCCCTTCCCAAAAGTCAACGCCTTTTTCTTCTTCTTCCCCTTGC
1 TCAGTTTGAAAAGCCTCTCTTTCCCTTCCCAAAAGTCAACGCCTTTTTCTTCTTCTTCCCCTTGC
743236 TTCTTATTTTCTTTCTCATTTCCCTGA
66 TTCTTATTTTCTTTCTCATTTCCCTGA
743263 AAATTTGAGA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.15, C:0.32, G:0.08, T:0.45
Consensus pattern (92 bp):
TCAGTTTGAAAAGCCTCTCTTTCCCTTCCCAAAAGTCAACGCCTTTTTCTTCTTCTTCCCCTTGC
TTCTTATTTTCTTTCTCATTTCCCTGA
Found at i:748199 original size:14 final size:14
Alignment explanation
Indices: 748182--748258 Score: 59
Period size: 14 Copynumber: 5.5 Consensus size: 14
748172 AAATGTAATT
*
748182 ATGCAAATATGCAA
1 ATGCAAAAATGCAA
*
748196 ATGCAAAAATGAAA
1 ATGCAAAAATGCAA
* *
748210 ATGTAAATAT--AA
1 ATGCAAAAATGCAA
* *
748222 ACGTAAAAATGCAAA
1 ATGCAAAAATGC-AA
748237 GATGCAAAAATGCAA
1 -ATGCAAAAATGCAA
*
748252 ATACAAA
1 ATGCAAA
748259 TGTAAATATG
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
12 10 0.20
14 26 0.52
15 4 0.08
16 10 0.20
ACGTcount: A:0.58, C:0.10, G:0.13, T:0.18
Consensus pattern (14 bp):
ATGCAAAAATGCAA
Found at i:748340 original size:20 final size:21
Alignment explanation
Indices: 748299--748356 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
748289 CAAATTGTGC
*
748299 AATACAAAAGC-AAATATAAA
1 AATACAAATGCAAAATATAAA
748319 AATACAAATGCAAAATA-AAA
1 AATACAAATGCAAAATATAAA
*
748339 AATGCAAAGATGCAAAAT
1 AATAC-AA-ATGCAAAAT
748357 GCAAATGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 17 0.52
21 7 0.21
22 9 0.27
ACGTcount: A:0.66, C:0.10, G:0.09, T:0.16
Consensus pattern (21 bp):
AATACAAATGCAAAATATAAA
Found at i:748364 original size:6 final size:7
Alignment explanation
Indices: 748324--748365 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
748314 ATAAAAATAC
748324 AAATGCA
1 AAATGCA
**
748331 AAATAAA
1 AAATGCA
748338 AAATGCA
1 AAATGCA
748345 AAGATGCA
1 AA-ATGCA
748353 AAATGC-
1 AAATGCA
748359 AAATGCA
1 AAATGCA
748366 TGTATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.60, C:0.12, G:0.14, T:0.14
Consensus pattern (7 bp):
AAATGCA
Found at i:751530 original size:2 final size:2
Alignment explanation
Indices: 751523--751560 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
751513 ATACTTATTA
751523 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
751561 TAATATGACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:752915 original size:3 final size:3
Alignment explanation
Indices: 752907--752955 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
752897 AACGGGCCTG
* * *
752907 TAA TAA TAA T-T TAA TAA TAA TAA TAA TTA TAA TTA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
752954 TA
1 TA
752956 TTATTATTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 1 0.03
3 38 0.97
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:760435 original size:14 final size:15
Alignment explanation
Indices: 760413--760446 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
760403 ATTTTCTAAA
*
760413 AAAACGTTTTTC-GG
1 AAAATGTTTTTCAGG
760427 AAAATGTTTTTCAGG
1 AAAATGTTTTTCAGG
760442 AAAAT
1 AAAAT
760447 TAATTACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (15 bp):
AAAATGTTTTTCAGG
Found at i:760712 original size:31 final size:29
Alignment explanation
Indices: 760644--760774 Score: 70
Period size: 31 Copynumber: 4.3 Consensus size: 29
760634 AATATTATTT
*
760644 TTATAATTTTATTAATAAAAATATTAATAT
1 TTAT-ATTTTATTAATAAAAATATTAATAA
760674 TGGTATATTTTATTGAAATAAAAATATT-ATAAA
1 T--TATATTTTATT--AATAAAAATATTAAT-AA
* * * * * *
760707 TTATATTATTTATTTATTAAAGTAATAGT-G
1 TTATA-T-TTTATTAATAAAAATATTAATAA
* * *
760737 TTATATTATATT-TTAAAAATATTAATTA
1 TTATATTTTATTAATAAAAATATTAATAA
*
760765 GTATATTTTA
1 TTATATTTTA
760775 AATATCTTTA
Statistics
Matches: 76, Mismatches: 16, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
27 9 0.12
28 13 0.17
29 1 0.01
30 6 0.08
31 20 0.26
32 7 0.09
33 20 0.26
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.50
Consensus pattern (29 bp):
TTATATTTTATTAATAAAAATATTAATAA
Found at i:760720 original size:33 final size:33
Alignment explanation
Indices: 760649--760717 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 33
760639 TATTTTTATA
* *
760649 ATTTTATT--AATAAAAATATTAATATTGGTAT
1 ATTTTATTGAAATAAAAATATTAAAATTGATAT
760680 ATTTTATTGAAATAAAAATATTATAAATT-ATATT
1 ATTTTATTGAAATAAAAATATTA-AAATTGATA-T
760714 ATTT
1 ATTT
760718 ATTTATTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 8 0.25
33 15 0.47
34 9 0.28
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.49
Consensus pattern (33 bp):
ATTTTATTGAAATAAAAATATTAAAATTGATAT
Found at i:760757 original size:91 final size:87
Alignment explanation
Indices: 760605--760774 Score: 209
Period size: 89 Copynumber: 1.9 Consensus size: 87
760595 AAGTATTTTT
* * * *
760605 AAAATATTAAAATAATTTATTTATTATTAAATATTATTTTTATAATTTTATTAATAAAAATATTA
1 AAAATATTAAAATAATTTATTTATTATTAAATAATAGTGTTATAATTATATTAATAAAAATATT-
*
760670 ATATTGGTATATTTTATTGAAATA
65 A-ATTAGTATATTTTATTGAAATA
* *
760694 AAAATATTATAAATTATATTATTTATTTATTAAAGTAATAGTGTTAT-ATTATATT-TTAAAAAT
1 AAAATATTA-AAATAAT-TTATTTA-TTATTAAA-TAATAGTGTTATAATTATATTAATAAAAAT
760757 ATTAATTAGTATATTTTA
62 ATTAATTAGTATATTTTA
760775 AATATCTTTA
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
89 22 0.31
90 7 0.10
91 17 0.24
92 15 0.21
93 9 0.13
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (87 bp):
AAAATATTAAAATAATTTATTTATTATTAAATAATAGTGTTATAATTATATTAATAAAAATATTA
ATTAGTATATTTTATTGAAATA
Found at i:760958 original size:23 final size:23
Alignment explanation
Indices: 760928--760978 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
760918 TTAAAATAAA
760928 AATATAATAT-ATTATATTATTAT
1 AATATAAT-TGATTATATTATTAT
*
760951 AATATAATTGATTATTTTATTAT
1 AATATAATTGATTATATTATTAT
760974 AATAT
1 AATAT
760979 TAAAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 1 0.04
23 25 0.96
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
AATATAATTGATTATATTATTAT
Found at i:760964 original size:18 final size:19
Alignment explanation
Indices: 760930--760976 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
760920 AAAATAAAAA
*
760930 TATAATAT-ATTATATTAT
1 TATAATATAATTAGATTAT
760948 TATAATATAATT-GATTAT
1 TATAATATAATTAGATTAT
* *
760966 TTTATTATAAT
1 TATAATATAAT
760977 ATTAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 22 0.88
19 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TATAATATAATTAGATTAT
Found at i:760996 original size:22 final size:23
Alignment explanation
Indices: 760968--761014 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
760958 TTGATTATTT
760968 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
760990 TATTATATTATTAGAAATATTAA
1 TATTATAATATTAAAAATATTAA
761013 TA
1 TA
761015 AATATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:761019 original size:22 final size:22
Alignment explanation
Indices: 760976--761019 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
760966 TTTATTATAA
*
760976 TATTAAAAATATAATATTATAT
1 TATTAAAAATATAATATAATAT
*
760998 TATTAGAAATATTAATA-AATAT
1 TATTAAAAATA-TAATATAATAT
761020 ATTTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
TATTAAAAATATAATATAATAT
Found at i:761044 original size:53 final size:53
Alignment explanation
Indices: 760924--761085 Score: 140
Period size: 53 Copynumber: 3.1 Consensus size: 53
760914 ATTATTAAAA
* ** *
760924 TAAAAATATAATATATTATATTATTATAATATAATTGATTATTTTATTATAATAT
1 TAAAAATAT-A-ATATTATATTATTAAAATATAATAAATTATTTTATAATAATAT
*
760979 TAAAAATATAATATTATATTATTAGAAATATTAATAAATATATTTTA-AAT-ATTT
1 TAAAAATATAATATTATATTATTA-AAATA-TAATAAAT-TATTTTATAATAATAT
* * * *
761033 TAATAAT-TAATATT-T-TGATTAAAATGATATTAAAATATTTTAT--TAATAT
1 TAAAAATATAATATTATATTATTAAAAT-ATAATAAATTATTTTATAATAATAT
761082 TAAA
1 TAAA
761086 TCCAAAAAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
48 1 0.01
49 13 0.14
50 10 0.11
51 6 0.07
52 1 0.01
53 21 0.23
54 14 0.16
55 17 0.19
56 7 0.08
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (53 bp):
TAAAAATATAATATTATATTATTAAAATATAATAAATTATTTTATAATAATAT
Found at i:763773 original size:41 final size:42
Alignment explanation
Indices: 763724--763805 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 42
763714 AAAACAGTAA
*
763724 TAATAAATAAGGAATAACAT-AAT-AATATATATATATATAC
1 TAATAAATAAGGAATAAAATAAATAAATATATATATATATAC
**
763764 TAATCAAATATTGAATAAAATAAATAAATATATATATATATA
1 TAAT-AAATAAGGAATAAAATAAATAAATATATATATATATA
763806 TACGTATAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 4 0.11
41 13 0.36
42 3 0.08
43 16 0.44
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.34
Consensus pattern (42 bp):
TAATAAATAAGGAATAAAATAAATAAATATATATATATATAC
Found at i:763826 original size:45 final size:48
Alignment explanation
Indices: 763721--763840 Score: 119
Period size: 45 Copynumber: 2.6 Consensus size: 48
763711 TAAAAAACAG
*
763721 TAATAATAAATAAGGAATAACATAATAATATATATATATATACTAATCA
1 TAATAATAAATAA-GAATAACATAATAATATATATATATATACTAATAA
* *
763770 -AATATTGAATAA-AATAA-ATAA-ATATATATATATATATACGT-ATAA
1 TAATAATAAATAAGAATAACATAATA-ATATATATATATATAC-TAATAA
* *
763815 TAATAAT-AATAATAA-AACGTAATAAT
1 TAATAATAAATAAGAATAACATAATAAT
763841 GAAAAAAATT
Statistics
Matches: 60, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
44 1 0.02
45 30 0.50
46 18 0.30
47 1 0.02
48 10 0.17
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (48 bp):
TAATAATAAATAAGAATAACATAATAATATATATATATATACTAATAA
Found at i:766891 original size:25 final size:22
Alignment explanation
Indices: 766838--766896 Score: 57
Period size: 25 Copynumber: 2.5 Consensus size: 22
766828 ACCCACCTTA
766838 TTTTTTC-TTTTCTTTTTTCCT
1 TTTTTTCTTTTTCTTTTTTCCT
**
766859 TTCGTTCTTTTGTCTCTTTTTCTCT
1 TTTTTTCTTTT-TCT-TTTTTC-CT
766884 TTTTTTCTGTTTT
1 TTTTTTCT-TTTT
766897 TCAATTTAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
21 5 0.17
22 3 0.10
23 3 0.10
24 6 0.21
25 9 0.31
26 3 0.10
ACGTcount: A:0.00, C:0.19, G:0.05, T:0.76
Consensus pattern (22 bp):
TTTTTTCTTTTTCTTTTTTCCT
Found at i:777783 original size:22 final size:23
Alignment explanation
Indices: 777729--777783 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
777719 AATAAAGTTG
*
777729 AAATAAAAAAACAGTAATAATAAA
1 AAAT-AAATAACAGTAATAATAAA
* **
777753 TAAGGAATAACA-TAATAATAAA
1 AAATAAATAACAGTAATAATAAA
777775 AAATAAATA
1 AAATAAATA
777784 TATATACTAA
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
22 16 0.67
23 6 0.25
24 2 0.08
ACGTcount: A:0.71, C:0.04, G:0.05, T:0.20
Consensus pattern (23 bp):
AAATAAATAACAGTAATAATAAA
Found at i:777815 original size:2 final size:2
Alignment explanation
Indices: 777808--777856 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
777798 ATATTGAATA
777808 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
777850 AT AT AT A
1 AT AT AT A
777857 CGTATAATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:777888 original size:12 final size:13
Alignment explanation
Indices: 777861--777909 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 13
777851 TATATACGTA
777861 TAATAATAATAA--
1 TAATAATAA-AACG
*
777873 TAATAAT-AAATG
1 TAATAATAAAACG
777885 TAATAATAAAACG
1 TAATAATAAAACG
777898 TAATAATGAAAA
1 TAATAAT-AAAA
777910 AAAATTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 2 0.06
11 1 0.03
12 14 0.44
13 11 0.34
14 4 0.12
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (13 bp):
TAATAATAAAACG
Found at i:779945 original size:33 final size:33
Alignment explanation
Indices: 779903--779971 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
779893 ATACTATGCT
779903 CACTGCCTCTTCATCTTCCTCTTCAGATTCAGA
1 CACTGCCTCTTCATCTTCCTCTTCAGATTCAGA
779936 CACTGCCTCTTCATCTTCCTCTTCAGATTCAGA
1 CACTGCCTCTTCATCTTCCTCTTCAGATTCAGA
779969 CAC
1 CAC
779972 AGAGGTCAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.19, C:0.38, G:0.09, T:0.35
Consensus pattern (33 bp):
CACTGCCTCTTCATCTTCCTCTTCAGATTCAGA
Found at i:785563 original size:30 final size:31
Alignment explanation
Indices: 785506--785563 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
785496 TTAAATGGTT
** *
785506 ACTTACTTTTTATGTGTTTTTTTTTATAGAA
1 ACTTACTTTTTATGTGTTACTTATTATAGAA
785537 ACTTAC-TTTTATGTGTTACTTATTATA
1 ACTTACTTTTTATGTGTTACTTATTATA
785564 TTTTTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 18 0.75
31 6 0.25
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.59
Consensus pattern (31 bp):
ACTTACTTTTTATGTGTTACTTATTATAGAA
Found at i:786874 original size:31 final size:31
Alignment explanation
Indices: 786831--786913 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 31
786821 CCCAACAGTT
*
786831 ATGTT-GGGGACCATATTGCAAACGGACTAA
1 ATGTTGGGGGACCATATTGCAAACGAACTAA
786861 ATGTTGGGGGACCATATTGCAAACGAACTAA
1 ATGTTGGGGGACCATATTGCAAACGAACTAA
**
786892 ATGTTGGGGGACTGTATTGCAA
1 ATGTTGGGGGACCATATTGCAA
786914 GTTTTAAAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.25
Consensus pattern (31 bp):
ATGTTGGGGGACCATATTGCAAACGAACTAA
Found at i:787081 original size:45 final size:45
Alignment explanation
Indices: 787008--787093 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
786998 TGATAGTTTA
* * *
787008 ATTCAAATATTATTTATTTTATATTTTATTTTAT-AATATATCAT
1 ATTCAAATATTATTAATCTTATATTTTATGTTATAAATATATCAT
*
787052 ATTCAAGTATTAATTAATCTTATATTTTATGTTATAAATATA
1 ATTCAAATATT-ATTAATCTTATATTTTATGTTATAAATATA
787094 ATTAGAGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 10 0.28
45 20 0.56
46 6 0.17
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (45 bp):
ATTCAAATATTATTAATCTTATATTTTATGTTATAAATATATCAT
Found at i:787959 original size:31 final size:30
Alignment explanation
Indices: 787917--787994 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 30
787907 TTAAAACTTG
*
787917 CAATATAGTCCCTCAACATTTAGTATGTTTA
1 CAATATGGTCCC-CAACATTTAGTATGTTTA
* *
787948 CAATATGGTCCCCTAACATTTAGTTTGTTTG
1 CAATATGGTCCCC-AACATTTAGTATGTTTA
*
787979 TAATATGGTCCCCAAC
1 CAATATGGTCCCCAAC
787995 GTAACTGTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
30 4 0.10
31 38 0.90
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (30 bp):
CAATATGGTCCCCAACATTTAGTATGTTTA
Found at i:795574 original size:3 final size:3
Alignment explanation
Indices: 795568--796348 Score: 833
Period size: 3 Copynumber: 262.7 Consensus size: 3
795558 ATTTTTTTCC
*
795568 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCC TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * * * * * * *
795616 TCC TCT TCC TCT TCC TCT TCC TCT TCC TCT TCC TCT TCC TCT TCC TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * * * * * * *
795664 TCC TCT TCC TCT TCCT TCC TCC TCT TCT TCC TCC TCT TC- TCC TCC
1 TCT TCT TCT TCT T-CT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
*
795709 TCT TCT TCC TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
795757 TCT TCT TCT TCT TCT CTCT TCT T-T TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT -TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
795802 TC- TCT TCTT TCT TCT TCT TCT TCT TCT TC- TCTT TCT TCT TCT TC-
1 TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT TC-T TCT TCT TCT TCT
795846 TCT TCTT TCT TCT TCT TC- TCT TCT TCT TCT TCT T-T TCT TCT TCT
1 TCT TC-T TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
795890 TCT TC- TCT TC- TCT TCT TCT TC- TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
795935 T-T TCT TCT TCTT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC- TCT
1 TCT TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
795979 TC- TCT TC- TCT TCT TCT TCT TCT TCT TCT TCT TCT T-T TCT TCTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC-T
796022 TCT TCTT TCT TCCT TCT TCT TCCT TCT TCTT TCT T-T TCCT TC- TCT
1 TCT TC-T TCT T-CT TCT TCT T-CT TCT TC-T TCT TCT T-CT TCT TCT
*
796067 TCT TC- TCT TCT TC- TCT TCTT TCT TCT TC- TCT T-T CCT T-T CTCT
1 TCT TCT TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT -TCT
*
796109 TCT TCT TCT TCT TCT T-T CTCT TTT TC- TCTT TCT TCT TCT TCT TC-
1 TCT TCT TCT TCT TCT TCT -TCT TCT TCT TC-T TCT TCT TCT TCT TCT
*
796153 TCC TCT CTCT TCT TCT TCT TCT TCT TCT TCT TC- TCT T-T CTCT TCT
1 TCT TCT -TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT -TCT TCT
*
796198 TCT TCT T-T CTCT TCT TC- TCT TC- TCT TC- TCC TCTT TCT CTCT TCT
1 TCT TCT TCT -TCT TCT TCT TCT TCT TCT TCT TCT TC-T TCT -TCT TCT
* *
796242 TCT T-T CCT TC- TCT TCT TCT TCT TCTT TCT TC- TCT CTCTT TCT TTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TC-T TCT TCT TCT -TC-T TCT TCT
796287 TCT TCT TCT TCT CTCT TCTT TCT T-T TCT T-T TCT TCTT TCT TCT TCT
1 TCT TCT TCT TCT -TCT TC-T TCT TCT TCT TCT TCT TC-T TCT TCT TCT
796333 TCTT TCT TCT CTCT TC
1 TC-T TCT TCT -TCT TC
796349 CTTATACACT
Statistics
Matches: 674, Mismatches: 39, Indels: 130
0.80 0.05 0.15
Matches are distributed among these distances:
2 66 0.10
3 534 0.79
4 73 0.11
5 1 0.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
TCT
Found at i:805071 original size:26 final size:26
Alignment explanation
Indices: 805033--805088 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
805023 AATATAATAG
*
805033 TATTATTACAATA-AT-ATACTCAATTA
1 TATTATAACAATATATGATACT--ATTA
*
805059 TATTATAATAATATATGATACTATTA
1 TATTATAACAATATATGATACTATTA
805085 TATT
1 TATT
805089 CTTATTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 19 0.73
27 2 0.08
28 5 0.19
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (26 bp):
TATTATAACAATATATGATACTATTA
Found at i:805249 original size:23 final size:21
Alignment explanation
Indices: 805222--805276 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
805212 TAGTATAATA
805222 ATATTATAAAAATTCCTTAAAAT
1 ATATTATAAAAATT--TTAAAAT
*
805245 ATATTTATTAATAATTTTAAAAT
1 ATA-TTA-TAAAAATTTTAAAAT
*
805268 ATAATATAA
1 ATATTATAA
805277 TATTTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
22 2 0.07
23 13 0.46
24 3 0.11
25 7 0.25
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (21 bp):
ATATTATAAAAATTTTAAAAT
Found at i:805277 original size:21 final size:23
Alignment explanation
Indices: 805238--805284 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
805228 TAAAAATTCC
*
805238 TTAAAATATATTTATTAATAATT
1 TTAAAATATATATATTAATAATT
*
805261 TTAAAATATA-ATA-TAATATTT
1 TTAAAATATATATATTAATAATT
805282 TTA
1 TTA
805285 TTTTTATAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.45
22 2 0.09
23 10 0.45
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TTAAAATATATATATTAATAATT
Found at i:805378 original size:29 final size:30
Alignment explanation
Indices: 805343--805408 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 30
805333 ATACAAGAGT
* *
805343 TAATATTTTTATTTATAAAATT-ATAGAAA
1 TAATATTTTTATTAATAAAATTGACAGAAA
* *
805372 TAATA-TTTTATTAATAATATTGACATAAA
1 TAATATTTTTATTAATAAAATTGACAGAAA
805401 TAATATTT
1 TAATATTT
805409 GTAATCGGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 14 0.45
29 15 0.48
30 2 0.06
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (30 bp):
TAATATTTTTATTAATAAAATTGACAGAAA
Found at i:810656 original size:28 final size:27
Alignment explanation
Indices: 810601--810658 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
810591 AACAATTACC
*
810601 ATTTATATGCATTTCTTTACTTTTTTTT
1 ATTTATATGCATTTCTTTA-TTTATTTT
810629 ATTTATATGCATTTATCTTT-TTTATTTT
1 ATTTATATGCA-TT-TCTTTATTTATTTT
810657 AT
1 AT
810659 ATTGTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 20 0.74
29 2 0.07
30 5 0.19
ACGTcount: A:0.21, C:0.09, G:0.03, T:0.67
Consensus pattern (27 bp):
ATTTATATGCATTTCTTTATTTATTTT
Found at i:811203 original size:13 final size:14
Alignment explanation
Indices: 811179--811208 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
811169 TTTTTTAGAA
811179 AAATTAAAAAATTT
1 AAATTAAAAAATTT
811193 AAATT-AAAAATTT
1 AAATTAAAAAATTT
811206 AAA
1 AAA
811209 AATTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATTAAAAAATTT
Found at i:812545 original size:92 final size:92
Alignment explanation
Indices: 812192--812558 Score: 542
Period size: 91 Copynumber: 4.0 Consensus size: 92
812182 GTGGACCATC
* * *
812192 AAAATTTGTGACGGATCCACATGTTCTGTCACAAAATTTAGAGTTTTTTTAATTATCCTCTCATT
1 AAAATTTGTGACGGGTCCACATGTTCTGTCACAAAATTTAGAGTTTTTTTAATTACCCGCTCATT
* *
812257 ACTTCCAATTTCCCTCCATTGAAACAT
66 TCCTCCAATTTCCCTCCATTGAAACAT
* * * * *
812284 AAAATTTGTGACGAGTTCATATGTTCCGTCACAAAATTTAGAGTTTTTTTAATTA-CCTCTCATT
1 AAAATTTGTGACGGGTCCACATGTTCTGTCACAAAATTTAGAGTTTTTTTAATTACCCGCTCATT
*
812348 TCCTCCAATTTCCATCCATTGAAACAT
66 TCCTCCAATTTCCCTCCATTGAAACAT
*
812375 AAAATTTGTGACGGGTCCACATGTTC-CTCACAAAATTTAGTA-TTTTTTTAATTACCCGCTCAT
1 AAAATTTGTGACGGGTCCACATGTTCTGTCACAAAATTTAG-AGTTTTTTTAATTACCCGCTCAT
*
812438 ATCCTCCAATTTCCCTCCATTGAAACAT
65 TTCCTCCAATTTCCCTCCATTGAAACAT
* * * *
812466 AAAATTTGTGACGGGTTCACATATTCTGTCACAAAATTTAGAGGTTTTTTACTTACCCGCTCATT
1 AAAATTTGTGACGGGTCCACATGTTCTGTCACAAAATTTAGAGTTTTTTTAATTACCCGCTCATT
*
812531 TCCTCCAATCTCCCTCCATTGAAACAT
66 TCCTCCAATTTCCCTCCATTGAAACAT
812558 A
1 A
812559 CTTATTTTAC
Statistics
Matches: 249, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
90 25 0.10
91 115 0.46
92 109 0.44
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (92 bp):
AAAATTTGTGACGGGTCCACATGTTCTGTCACAAAATTTAGAGTTTTTTTAATTACCCGCTCATT
TCCTCCAATTTCCCTCCATTGAAACAT
Done.