Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008525.1 Hibiscus syriacus cultivar Beakdansim tig00111394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 732385
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 3
Found at i:490037 original size:23 final size:23
Alignment explanation
Indices: 489993--490049 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 23
489983 TAAAAATATT
489993 ATATATTTTGGAAAATTATTAATAA
1 ATATATTTT--AAAATTATTAATAA
490018 ATATATTTTAAATATT-TTAATAA
1 ATATATTTTAAA-ATTATTAATAA
*
490041 TTAT-TTTTA
1 ATATATTTTA
490050 TTAAAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 5 0.17
23 13 0.43
24 3 0.10
25 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATTTTAAAATTATTAATAA
Found at i:493408 original size:15 final size:15
Alignment explanation
Indices: 493386--493427 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
493376 AAACCCTAAC
493386 CCCT-AACATATAAA
1 CCCTAAACATATAAA
493400 CCCTAAACATATAAA
1 CCCTAAACATATAAA
*
493415 CCTTAAATCATAT
1 CCCTAAA-CATAT
493428 CACGTAAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 4 0.16
15 16 0.64
16 5 0.20
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (15 bp):
CCCTAAACATATAAA
Found at i:493467 original size:21 final size:22
Alignment explanation
Indices: 493432--493478 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
493422 TCATATCACG
* * *
493432 TAAACTCTAAAACTCTGAACTT
1 TAAACCCTAAAACTCTAAACCT
493454 TAAACCCT-AAACTCTAAACCT
1 TAAACCCTAAAACTCTAAACCT
493475 TAAA
1 TAAA
493479 TCATATCACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.45, C:0.26, G:0.02, T:0.28
Consensus pattern (22 bp):
TAAACCCTAAAACTCTAAACCT
Found at i:493474 original size:57 final size:59
Alignment explanation
Indices: 493396--493523 Score: 206
Period size: 57 Copynumber: 2.2 Consensus size: 59
493386 CCCTAACATA
* *
493396 TAAACCCTAAACATATAAACCTTAAATCATATCACGTAAACTCTAAAAC-TCTGAACTT
1 TAAACCCTAAACATATAAACCTTAAATCATATCACATAAACTCTAAAACTTCTGAACTC
* *
493454 TAAACCCTAAAC-TCTAAACCTTAAATCATATCACATAAACTCTAAAACTTTTGAACTC
1 TAAACCCTAAACATATAAACCTTAAATCATATCACATAAACTCTAAAACTTCTGAACTC
493512 TAAACCCTAAAC
1 TAAACCCTAAAC
493524 CTTAATACCT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
57 34 0.52
58 31 0.48
ACGTcount: A:0.45, C:0.26, G:0.02, T:0.27
Consensus pattern (59 bp):
TAAACCCTAAACATATAAACCTTAAATCATATCACATAAACTCTAAAACTTCTGAACTC
Found at i:493585 original size:35 final size:35
Alignment explanation
Indices: 493545--493654 Score: 143
Period size: 35 Copynumber: 3.1 Consensus size: 35
493535 AACATTAAGC
* * *
493545 CATAAA-TACTAAACTCTAAACTTTAAATCCTATTA
1 CATAAACT-CTAAACTCTAAACCTTAAATCATATCA
*
493580 TATAAACTCTAAAC-CTTAAACCTTAAATCATATCA
1 CATAAACTCTAAACTC-TAAACCTTAAATCATATCA
*
493615 CATAAACTCTAAACTCTAAACCTTAAATCTTATCA
1 CATAAACTCTAAACTCTAAACCTTAAATCATATCA
493650 CATAA
1 CATAA
493655 TTTGAAAGAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
34 1 0.02
35 63 0.95
36 2 0.03
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (35 bp):
CATAAACTCTAAACTCTAAACCTTAAATCATATCA
Found at i:494054 original size:14 final size:14
Alignment explanation
Indices: 494037--494077 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
494027 TTTATTCATC
494037 AATAATGTATTTTT
1 AATAATGTATTTTT
494051 AAT-A--TATTTTT
1 AATAATGTATTTTT
*
494062 AATAATGTAATTTT
1 AATAATGTATTTTT
494076 AA
1 AA
494078 AAAATCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 10 0.43
12 1 0.04
13 1 0.04
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (14 bp):
AATAATGTATTTTT
Found at i:502250 original size:22 final size:22
Alignment explanation
Indices: 502225--502286 Score: 97
Period size: 22 Copynumber: 2.8 Consensus size: 22
502215 TCGATATCCT
*
502225 ATGAACAACATTGATACTTGTG
1 ATGAACAATATTGATACTTGTG
* *
502247 ATGAACAATATCGATACATGTG
1 ATGAACAATATTGATACTTGTG
502269 ATGAACAATATTGATACT
1 ATGAACAATATTGATACT
502287 ACTAATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (22 bp):
ATGAACAATATTGATACTTGTG
Found at i:507524 original size:37 final size:33
Alignment explanation
Indices: 507431--507549 Score: 91
Period size: 37 Copynumber: 3.5 Consensus size: 33
507421 TTATCACTTT
** *
507431 GGATGACATGACACATGTTATGTCATCATTTTG
1 GGATGACATGACACATGTTACATCATCATTTAG
* *
507464 GG-TGTCATGACACATGCCT-CATCATCACTTTAG
1 GGATGACATGACACATG-TTACATCATCA-TTTAG
* *
507497 GAGACATGACATGACACATGTTACATCATTATTTTTG
1 G-G--ATGACATGACACATGTTACATCATCA-TTTAG
*
507534 GG-TGACGTGACACATG
1 GGATGACATGACACATG
507550 CCACATTAGA
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
32 19 0.28
33 21 0.31
34 1 0.01
36 2 0.03
37 25 0.37
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (33 bp):
GGATGACATGACACATGTTACATCATCATTTAG
Found at i:514871 original size:21 final size:21
Alignment explanation
Indices: 514831--514879 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
514821 CGATTTACAT
514831 ATTCGCATTGCGATAGTCCAA
1 ATTCGCATTGCGATAGTCCAA
* * **
514852 GTTCGCGTTGCGATTTTCCAA
1 ATTCGCATTGCGATAGTCCAA
514873 ATTCGCA
1 ATTCGCA
514880 ACGACTGGTG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (21 bp):
ATTCGCATTGCGATAGTCCAA
Found at i:514973 original size:6 final size:6
Alignment explanation
Indices: 514962--514992 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
514952 GACACGTATT
514962 ACCACG ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG A
514993 GACGGCGGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.48, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:515646 original size:19 final size:19
Alignment explanation
Indices: 515622--515663 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
515612 AATCGCAACG
515622 CGAACTTCGACTATCACAA
1 CGAACTTCGACTATCACAA
* *
515641 CGAACTTGGACTATCGCAA
1 CGAACTTCGACTATCACAA
515660 CGAA
1 CGAA
515664 TTTGGAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.36, C:0.29, G:0.17, T:0.19
Consensus pattern (19 bp):
CGAACTTCGACTATCACAA
Found at i:515659 original size:61 final size:61
Alignment explanation
Indices: 515585--515711 Score: 227
Period size: 61 Copynumber: 2.1 Consensus size: 61
515575 CGTTGCGATT
515585 TTGGACTATCGCAACGAATTTAGAATAAATCGCAACGCGAACTTCGACTATCACAACGAAC
1 TTGGACTATCGCAACGAATTTAGAATAAATCGCAACGCGAACTTCGACTATCACAACGAAC
* * *
515646 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACTAAC
1 TTGGACTATCGCAACGAATTTAGAATAAATCGCAACGCGAACTTCGACTATCACAACGAAC
515707 TTGGA
1 TTGGA
515712 ATAAATCGCA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (61 bp):
TTGGACTATCGCAACGAATTTAGAATAAATCGCAACGCGAACTTCGACTATCACAACGAAC
Found at i:515805 original size:105 final size:105
Alignment explanation
Indices: 515588--515955 Score: 591
Period size: 105 Copynumber: 3.5 Consensus size: 105
515578 TGCGATTTTG
* * * * * *
515588 GACTATCGCAACGAATTTAGAATAAATCGCAACGCGAACTTCGACTATCACAACGAACTTGGACT
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAT
515653 --ATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
66 AAATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
515691 GACTATCGCAACTAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAT
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAT
* *
515756 AAATTGCAACGAATTTTGAATAAATCGCAACGCGAACTTC
66 AAATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
515796 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAGCGAATTTGGAAT
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAT
515861 AAATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
66 AAATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
515901 GACTATCGCAACGCGAACTTGGACT--ATCGCAACGCGAACTTGGACTATCGCAACG
1 GACTATCGCAA--CGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACG
515956 CGAACTTGGA
Statistics
Matches: 246, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
103 58 0.24
105 177 0.72
107 11 0.04
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (105 bp):
GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAT
AAATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:515908 original size:21 final size:21
Alignment explanation
Indices: 515613--515980 Score: 309
Period size: 21 Copynumber: 17.6 Consensus size: 21
515603 TTTAGAATAA
*
515613 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
*
515634 ATCACAA--CGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
* *
515653 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTGGACT
*
515672 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTGGACT
* *
515695 ATCGCAA--CTAACTTGGAAT
1 ATCGCAACGCGAACTTGGACT
515714 AAATCGCAACGCGAACTTGGACT
1 --ATCGCAACGCGAACTTGGACT
* *
515737 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTGGACT
* * * *
515756 AAATTGCAA--CGAATTTTGAAT
1 --ATCGCAACGCGAACTTGGACT
*
515777 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTGGACT
*
515800 ATCGCAA--CGAACTTGGAAT
1 ATCGCAACGCGAACTTGGACT
515819 AAATCGCAACGCGAACTTGGACT
1 --ATCGCAACGCGAACTTGGACT
* *
515842 ATCGC-A-GCGAATTTGGAAT
1 ATCGCAACGCGAACTTGGACT
* *
515861 AAATCGCAA--CGAATTTGGAAT
1 --ATCGCAACGCGAACTTGGACT
*
515882 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTGGACT
515905 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
515926 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
515947 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
*
515968 ATCGCAATGCGAA
1 ATCGCAACGCGAA
515981 TATGTAAATC
Statistics
Matches: 295, Mismatches: 31, Indels: 42
0.80 0.08 0.11
Matches are distributed among these distances:
19 67 0.23
20 1 0.00
21 178 0.60
22 1 0.00
23 48 0.16
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (21 bp):
ATCGCAACGCGAACTTGGACT
Found at i:516308 original size:59 final size:60
Alignment explanation
Indices: 516213--516360 Score: 154
Period size: 59 Copynumber: 2.5 Consensus size: 60
516203 TCATCATATG
** * * *** ** * *
516213 TCCCCAAACTACAACCCTCATTTTAAATTGGTCCTTAAACTTTTAAATATTCAAATTTCA
1 TCCCCAAACTATGACTCTCATTCTAAATTAACCCTTAAAAATTTAAACATTCAAATTTAA
*
516273 -CCCCAAACTATGACTCTCATTCTAAATTAACCCTTAAAAATTTAAACATTCTAATTTAA
1 TCCCCAAACTATGACTCTCATTCTAAATTAACCCTTAAAAATTTAAACATTCAAATTTAA
* * *
516332 TCCCTAAGCTATGACTCTCTTTCTAAATT
1 TCCCCAAACTATGACTCTCATTCTAAATT
516361 GATCCCCAAA
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
59 47 0.65
60 25 0.35
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.36
Consensus pattern (60 bp):
TCCCCAAACTATGACTCTCATTCTAAATTAACCCTTAAAAATTTAAACATTCAAATTTAA
Found at i:516359 original size:60 final size:59
Alignment explanation
Indices: 516245--516360 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 59
516235 TTAAATTGGT
** * *
516245 CCTTAAACTTTTAAATATTCAAATTTCACCCCAAACTATGACTCTCATTCTAAATTAAC
1 CCTTAAAAATTTAAACATTCAAATTTAACCCCAAACTATGACTCTCATTCTAAATTAAC
* * * *
516304 CCTTAAAAATTTAAACATTCTAATTTAATCCCTAAGCTATGACTCTCTTTCTAAATT
1 CCTTAAAAATTTAAACATTCAAATTTAA-CCCCAAACTATGACTCTCATTCTAAATT
516361 GATCCCCAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
59 23 0.48
60 25 0.52
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (59 bp):
CCTTAAAAATTTAAACATTCAAATTTAACCCCAAACTATGACTCTCATTCTAAATTAAC
Found at i:521613 original size:15 final size:15
Alignment explanation
Indices: 521593--521623 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
521583 AAAATTACTA
521593 TTACAGTCGTGTTTT
1 TTACAGTCGTGTTTT
521608 TTACAGTCGTGTTTT
1 TTACAGTCGTGTTTT
521623 T
1 T
521624 CCTTTGTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.19, T:0.55
Consensus pattern (15 bp):
TTACAGTCGTGTTTT
Found at i:522171 original size:17 final size:18
Alignment explanation
Indices: 522145--522184 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
522135 ATTATATGGA
522145 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
522161 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
522179 TATTAT
1 TATTAT
522185 ATATGTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:522485 original size:21 final size:20
Alignment explanation
Indices: 522431--522486 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
522421 AACTTATATA
* *
522431 TTTATATTATTTTTTATTAT
1 TTTATATTATTATTCATTAT
* *
522451 TTTCATTTTTTTATTCATTAT
1 TTT-ATATTATTATTCATTAT
522472 TATTATATTATTATT
1 T-TTATATTATTATT
522487 TTTTTAAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 3 0.11
21 23 0.82
22 2 0.07
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTATATTATTATTCATTAT
Found at i:522685 original size:2 final size:2
Alignment explanation
Indices: 522678--522721 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
522668 TAATACTTTG
*
522678 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
522720 AT
1 AT
522722 TTTTTCCTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:525313 original size:8 final size:8
Alignment explanation
Indices: 525300--525338 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
525290 GAACATTTCG
*
525300 TGCATTCT
1 TGCATTTT
525308 TGCA-TTT
1 TGCATTTT
525315 TGCATTTT
1 TGCATTTT
*
525323 TGCCTTTT
1 TGCATTTT
525331 TGCATTTT
1 TGCATTTT
525339 CATCTACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (8 bp):
TGCATTTT
Found at i:526562 original size:21 final size:21
Alignment explanation
Indices: 526521--526578 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
526511 CAAAAAAACA
* *
526521 AAAAAAAACAAAGAGAAAGAG-
1 AAAAAGAACAAA-AAAAAGAGC
526542 AAACAAGAACAAAAAAAAGAGC
1 AAA-AAGAACAAAAAAAAGAGC
*
526564 AAAAATAA-AAAAAAA
1 AAAAAGAACAAAAAAA
526579 GGGACAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
20 7 0.22
21 14 0.44
22 11 0.34
ACGTcount: A:0.79, C:0.07, G:0.12, T:0.02
Consensus pattern (21 bp):
AAAAAGAACAAAAAAAAGAGC
Found at i:527243 original size:22 final size:22
Alignment explanation
Indices: 527215--527264 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
527205 CCCCATCAAT
527215 CTTTGAGCATCAAATACCAAAC
1 CTTTGAGCATCAAATACCAAAC
*
527237 CTTTGAGCATCAAATGCCAAAC
1 CTTTGAGCATCAAATACCAAAC
527259 CTTTGA
1 CTTTGA
527265 CCAAACACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (22 bp):
CTTTGAGCATCAAATACCAAAC
Found at i:528504 original size:99 final size:103
Alignment explanation
Indices: 528087--529106 Score: 1573
Period size: 105 Copynumber: 9.9 Consensus size: 103
528077 GCCACCCACG
* *
528087 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTTCCCAATTTCAGAGCCAA
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAA-CAACAA-TTT-CCAA-TTCAGAGCCAA
*
528152 TTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
62 TTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* *
528194 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCAATCTCAGAGCCAATT
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAA-TTTCCAAT-TCAGAGCCAATT
*
528259 TCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCA
64 TCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
528299 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATT
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAA-TTTCCAAT-TCAGAGCCAATT
528364 TCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
64 TCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
528404 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TT-C-ATTCAGAGCCAATTTC
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAATTTCCAATTCAGAGCCAATTTC
* *
528465 AACTTCACAGCGAAGGATATTGGACTCCAGACAATGCA
66 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
528503 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATT
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAA-TTTCCAAT-TCAGAGCCAATT
*
528568 TTAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
64 TCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
528608 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AATTT-C-ATTCAGAG-CAATTTC
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAATTTCCAATTCAGAGCCAATTTC
528669 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
66 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
528707 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AATTT-C-ATTCAGAGCCAATTTC
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAATTTCCAATTCAGAGCCAATTTC
* *
528769 AACTTCACAGCGAAGGATATTGGACTCCAGACAATGCA
66 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* * *
528807 AGTTCAACTTCACGACGAAGGGACCGCTGTTTGTCAACAACAACTTCCCAATCCCAGAGCCAATT
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAA-TTTCCAAT-TCAGAGCCAATT
*
528872 TCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTA
64 TCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
**
528912 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AATTT-C-ATTCAGATTCAATTTC
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAATTTCCAATTCAGAGCCAATTTC
* *
528974 AACTTCACAACGAAGGATATTGGACTCGAGACAACACA
66 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
* * * **
529012 AGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAATTT-CCAATT-CAGAGCCAAT
* *
529077 TTCAACTTCACGACGGAGGATATTGGACTC
63 TTCAACTTCACAACGAAGGATATTGGACTC
529107 TAAACAATGC
Statistics
Matches: 856, Mismatches: 38, Indels: 39
0.92 0.04 0.04
Matches are distributed among these distances:
99 188 0.22
100 173 0.20
101 9 0.01
102 13 0.02
103 7 0.01
104 12 0.01
105 374 0.44
106 43 0.05
107 37 0.04
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (103 bp):
AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAATTTCCAATTCAGAGCCAATTTC
AACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
Found at i:528541 original size:204 final size:206
Alignment explanation
Indices: 528087--529116 Score: 1575
Period size: 204 Copynumber: 5.0 Consensus size: 206
528077 GCCACCCACG
* *
528087 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTTCCCAATTTCAGAGCCAA
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAA-CAACAA-TTT-CCAA-TTCAGAGCCAA
*
528152 TTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
62 TTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA
*
528217 CCGCTGGTTGTCAACAACAACTTCCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
127 CCGCTGCTTGTCAACAACAACTT-CCAAT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATT
528282 GGACTCCAGACAATGCA
190 GGACTCCAGACAATGCA
528299 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATT
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAA-TTTCCAAT-TCAGAGCCAATT
528364 TCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
64 TCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
*
528429 GCTGCTTGTCAACAA-AA-TT-C-ATTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
129 GCTGCTTGTCAACAACAACTTCCAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
528490 TCCAGACAATGCA
194 TCCAGACAATGCA
528503 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTTCCAATCTCAGAGCCAATT
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAA-TTTCCAAT-TCAGAGCCAATT
*
528568 TTAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
64 TCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
*
528633 GCTGCTTGTCAACAA-AA-TTTC-ATTCAGAG-CAATTTCAACTTCACAACGAAGGATATTGGAC
129 GCTGCTTGTCAACAACAACTTCCAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
*
528694 TCCAGACAACGCA
194 TCCAGACAATGCA
528707 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AATTT-C-ATTCAGAGCCAATTTC
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAATTTCCAATTCAGAGCCAATTTC
* *
528769 AACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGC
66 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
* *
528834 TGTTTGTCAACAACAACTTCCCAATCCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
131 TGCTTGTCAACAACAACTT-CCAAT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
* *
528899 TCCAGACAACGTA
194 TCCAGACAATGCA
**
528912 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AATTT-C-ATTCAGATTCAATTTC
1 AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAATTTCCAATTCAGAGCCAATTTC
* * * *
528974 AACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGC
66 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
* * ** * *
529039 TGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCCAATTTCAACTTCACGACGGAGGATATTGGA
131 TGCTTGTCAAC-AACAACTT-CCAATT-CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
* *
529104 CTCTAAACAATGC
193 CTCCAGACAATGC
529117 TACTTACTTG
Statistics
Matches: 773, Mismatches: 35, Indels: 26
0.93 0.04 0.03
Matches are distributed among these distances:
199 88 0.11
200 4 0.01
201 3 0.00
202 4 0.01
203 4 0.01
204 287 0.37
205 184 0.24
206 56 0.07
208 2 0.00
209 3 0.00
210 94 0.12
211 8 0.01
212 36 0.05
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (206 bp):
AGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAATTTCCAATTCAGAGCCAATTTC
AACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
TGCTTGTCAACAACAACTTCCAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
CAGACAATGCA
Found at i:530280 original size:14 final size:15
Alignment explanation
Indices: 530261--530295 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
530251 TATATGGATA
530261 TTTATTCAT-TTATT
1 TTTATTCATGTTATT
530275 TTTATTCATGTTATT
1 TTTATTCATGTTATT
*
530290 ATTATT
1 TTTATT
530296 ATATGTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.23, C:0.06, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTATTCATGTTATT
Found at i:530594 original size:14 final size:15
Alignment explanation
Indices: 530543--530596 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 15
530533 AACTTTATAT
*
530543 TTATATT-ATTTTTA
1 TTATATTCATTATTA
*
530557 TTATTTTCATT-TT-
1 TTATATTCATTATTA
530570 TT-TATTCATTATTA
1 TTATATTCATTATTA
530584 TTATATT-ATTATT
1 TTATATTCATTATT
530597 TTTTTAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
12 7 0.21
13 4 0.12
14 16 0.47
15 7 0.21
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (15 bp):
TTATATTCATTATTA
Found at i:530786 original size:2 final size:2
Alignment explanation
Indices: 530779--530846 Score: 136
Period size: 2 Copynumber: 34.0 Consensus size: 2
530769 TTATTTATTA
530779 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
530821 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
530847 TTTTTTTTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:553113 original size:16 final size:16
Alignment explanation
Indices: 553092--553128 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
553082 TGTGTTCAAG
*
553092 AAATTGTTGACGGAAA
1 AAATTGTTAACGGAAA
*
553108 AAATTGTTAACGGAAG
1 AAATTGTTAACGGAAA
553124 AAATT
1 AAATT
553129 ATTATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.22, T:0.27
Consensus pattern (16 bp):
AAATTGTTAACGGAAA
Found at i:560712 original size:23 final size:23
Alignment explanation
Indices: 560694--560754 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
560684 CTCATATAAA
*
560694 TGCACCGAAGTGCCACATAGAAT
1 TGCACCGTAGTGCCACATAGAAT
* *
560717 TGCACCGTAGTGCCGCGTAGAAT
1 TGCACCGTAGTGCCACATAGAAT
560740 TGCACCGTAGTGCCA
1 TGCACCGTAGTGCCA
560755 TATAATAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (23 bp):
TGCACCGTAGTGCCACATAGAAT
Found at i:560941 original size:103 final size:103
Alignment explanation
Indices: 560770--560987 Score: 427
Period size: 103 Copynumber: 2.1 Consensus size: 103
560760 TAATGTCCAT
560770 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
*
560835 GACTTCACACATGTTCCAAATAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
560873 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
560938 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
560976 AAGGACCACATA
1 AAGGACCACATA
560988 GACCCTCGAC
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 114 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:563342 original size:31 final size:31
Alignment explanation
Indices: 563307--563373 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
563297 TAACGACGAC
*
563307 AAATGGTCGGGGACCATATTGTAAACAGACT
1 AAATGGTCGGGGACCATATTGCAAACAGACT
* *
563338 AAATGTTGGGGGACCATATTGCAAACAGACT
1 AAATGGTCGGGGACCATATTGCAAACAGACT
563369 AAATG
1 AAATG
563374 TTGAGAGACT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.22
Consensus pattern (31 bp):
AAATGGTCGGGGACCATATTGCAAACAGACT
Found at i:563374 original size:31 final size:31
Alignment explanation
Indices: 563315--563376 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
563305 ACAAATGGTC
*
563315 GGGGACCATATTGTAAACAGACTAAATGTTG
1 GGGGACCATATTGCAAACAGACTAAATGTTG
563346 GGGGACCATATTGCAAACAGACTAAATGTTG
1 GGGGACCATATTGCAAACAGACTAAATGTTG
563377 AGAGACTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (31 bp):
GGGGACCATATTGCAAACAGACTAAATGTTG
Found at i:577374 original size:11 final size:11
Alignment explanation
Indices: 577360--577384 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
577350 AATTTTTTTT
577360 AAATTATTTAA
1 AAATTATTTAA
577371 AAATTATTTAA
1 AAATTATTTAA
577382 AAA
1 AAA
577385 AAATATGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AAATTATTTAA
Found at i:579979 original size:2 final size:2
Alignment explanation
Indices: 579972--580050 Score: 110
Period size: 2 Copynumber: 40.0 Consensus size: 2
579962 TACTCATGTG
579972 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT ACT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
*
580013 AGT TT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
580051 TTATGTAAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
1 3 0.04
2 65 0.93
3 2 0.03
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:581013 original size:3 final size:3
Alignment explanation
Indices: 581005--581059 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
580995 GTACTTTACT
581005 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
581053 ATA ATA A
1 ATA ATA A
581060 AATGATTTTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:592460 original size:31 final size:32
Alignment explanation
Indices: 592425--592488 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
592415 GCTGAAACTC
*
592425 AACTCGAAAGCTACTTGATA-CTGACTCGAAA
1 AACTCGAAAGATACTTGATACCTGACTCGAAA
** *
592456 AACTCGCGAGATACTTGATACCTGACTTGAAA
1 AACTCGAAAGATACTTGATACCTGACTCGAAA
592488 A
1 A
592489 GTTCACAAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 17 0.61
32 11 0.39
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (32 bp):
AACTCGAAAGATACTTGATACCTGACTCGAAA
Found at i:600941 original size:2 final size:2
Alignment explanation
Indices: 600934--600962 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
600924 CCAAAATCTC
600934 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
600963 CACCTAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:604426 original size:51 final size:53
Alignment explanation
Indices: 604299--604438 Score: 230
Period size: 51 Copynumber: 2.7 Consensus size: 53
604289 GATATTAAAC
* * *
604299 AGAACACTCATTCAGTGTGAAAATTTGTTGTGTATATAGTCTATTTTTGGTGAT
1 AGAACAC-CAATCAGTATGAAGATTTGTTGTGTATATAGTCTATTTTTGGTGAT
604353 AGAACACCAATCAGTATGAAGATTTGTTGTGTATATAGTCTATTTTT-G-GAT
1 AGAACACCAATCAGTATGAAGATTTGTTGTGTATATAGTCTATTTTTGGTGAT
604404 AGAACACCAATCAGTATGAAGATTTGTTGTGTATA
1 AGAACACCAATCAGTATGAAGATTTGTTGTGTATA
604439 AAACCTGTTT
Statistics
Matches: 83, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
51 38 0.46
52 1 0.01
53 37 0.45
54 7 0.08
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
AGAACACCAATCAGTATGAAGATTTGTTGTGTATATAGTCTATTTTTGGTGAT
Found at i:604617 original size:25 final size:25
Alignment explanation
Indices: 604589--604639 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
604579 ATTCAATATT
*
604589 TTCTCTCTGA-TATGAAATATAGAAA
1 TTCTCTCT-ACTATGAAACATAGAAA
*
604614 TTCTGTCTACTATGAAACATAGAAA
1 TTCTCTCTACTATGAAACATAGAAA
604639 T
1 T
604640 AGCAGCTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (25 bp):
TTCTCTCTACTATGAAACATAGAAA
Found at i:614714 original size:79 final size:79
Alignment explanation
Indices: 614583--614748 Score: 314
Period size: 79 Copynumber: 2.1 Consensus size: 79
614573 TTTTCCCTGT
*
614583 GCACCACCCAAACTTACATCCATCAACCAAAACAATGGTAATTAATTGAAAACTATCGTCACCCA
1 GCACCACCCAAACTTACACCCATCAACCAAAACAATGGTAATTAATTGAAAACTATCGTCACCCA
614648 TCATTATTATACCA
66 TCATTATTATACCA
614662 GCACCACCCAAACTTACACCCATCAACCAAAACAATGGTAATTAATTGAAAACTATCGTCACCCA
1 GCACCACCCAAACTTACACCCATCAACCAAAACAATGGTAATTAATTGAAAACTATCGTCACCCA
*
614727 TCTTTATTATACCA
66 TCATTATTATACCA
614741 GCACCACC
1 GCACCACC
614749 TTGTCTATGA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
79 85 1.00
ACGTcount: A:0.39, C:0.31, G:0.07, T:0.23
Consensus pattern (79 bp):
GCACCACCCAAACTTACACCCATCAACCAAAACAATGGTAATTAATTGAAAACTATCGTCACCCA
TCATTATTATACCA
Found at i:621238 original size:101 final size:101
Alignment explanation
Indices: 621055--621250 Score: 261
Period size: 100 Copynumber: 1.9 Consensus size: 101
621045 TCCCAATAAG
* * * * *
621055 TCGTATCAAGACGAAGAAGAAGGAGAATGTGATTTTTTTTATATTATATTTTAATTACCAACTAA
1 TCGTATAAAGAAGAAGAAGAAGAAGAATGTGAATTTTTTTATACTATATTTTAATTACCAACTAA
621120 GACTTATGTTAATGGATA-AAAACATAAGGGATCAC
66 GACTTATGTTAATGGATACAAAACATAAGGGATCAC
* * * **
621155 TCGTATAAAGAAGAATAATAAGAAGATTGTGAATTTTTTTATACTATATTTTTAATTATTAACTT
1 TCGTATAAAGAAGAAGAAGAAGAAGAATGTGAATTTTTTTATACTATA-TTTTAATTACCAAC-T
*
621220 AA-ACTTTTGTTAATGGATACAAAACATAAGG
64 AAGACTTATGTTAATGGATACAAAACATAAGG
621251 TTCAACTTGT
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
100 40 0.49
101 28 0.34
102 14 0.17
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (101 bp):
TCGTATAAAGAAGAAGAAGAAGAAGAATGTGAATTTTTTTATACTATATTTTAATTACCAACTAA
GACTTATGTTAATGGATACAAAACATAAGGGATCAC
Found at i:626000 original size:61 final size:61
Alignment explanation
Indices: 625935--626125 Score: 149
Period size: 61 Copynumber: 3.2 Consensus size: 61
625925 TTGCAGCGTA
* * *** * *
625935 TATCCTCAAACTACCGAT-TT-ATATTTTAAATTGGTGTCTATTTTTTTAGATATTTTAATTT
1 TATCCTCAAACTA-CGATATTCAT-TTTTAAATTAGTCTCTAAACTTTTAAATATTCTAATTT
* *
625996 TATCCTCAAACTATGATATTCATTTTTAAATTAGTCTTTAAACTTTTAAATATTCTAATTT
1 TATCCTCAAACTACGATATTCATTTTTAAATTAGTCTCTAAACTTTTAAATATTCTAATTT
* * ** ** * * *
626057 CATCCTCAAACTATGATCCTCA-TTCCAAATTAGCCCCTAAACTTTT-AATCTT-TCAATTT
1 TATCCTCAAACTACGATATTCATTTTTAAATTAGTCTCTAAACTTTTAAATATTCT-AATTT
*
626116 TATCCCCAAA
1 TATCCTCAAA
626126 TTCATCTAAA
Statistics
Matches: 107, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
58 1 0.01
59 18 0.17
60 22 0.21
61 64 0.60
62 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.05, T:0.45
Consensus pattern (61 bp):
TATCCTCAAACTACGATATTCATTTTTAAATTAGTCTCTAAACTTTTAAATATTCTAATTT
Found at i:626340 original size:60 final size:59
Alignment explanation
Indices: 626275--626433 Score: 153
Period size: 60 Copynumber: 2.6 Consensus size: 59
626265 GAAATGTTGA
* **
626275 AAAAGTTTGAGGACTAATTTAGAATGA-AGGAT-ATAGTTTGTGGATGAAAATAAAATATTC
1 AAAAGTTT-AGGACTAATTTAGAATGATA--ATCATAATTTAAGGATGAAAATAAAATATTC
* * *
626335 AAAAGTTTAAGTAC-ACATTTAGAATGATAATCATAATTTAAGGATGAAATTAAAATATTT
1 AAAAGTTT-AGGACTA-ATTTAGAATGATAATCATAATTTAAGGATGAAAATAAAATATTC
* * * *
626395 AAAAGTTTATGATCTAATTTAAAAAGATGATCATAATTT
1 AAAAGTTTAGGA-CTAATTTAGAATGATAATCATAATTT
626434 GAAGACGTAT
Statistics
Matches: 82, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
59 5 0.06
60 75 0.91
61 2 0.02
ACGTcount: A:0.46, C:0.04, G:0.15, T:0.35
Consensus pattern (59 bp):
AAAAGTTTAGGACTAATTTAGAATGATAATCATAATTTAAGGATGAAAATAAAATATTC
Found at i:633780 original size:2 final size:2
Alignment explanation
Indices: 633773--633801 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
633763 AAATGGATCC
633773 AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
633802 GCAAGAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:641326 original size:29 final size:29
Alignment explanation
Indices: 641291--641353 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
641281 GCAGCTCTCT
*
641291 ATAGTCGGGAGAAC-ATTTTATAACTTTTA
1 ATAGTCGGAAG-ACTATTTTATAACTTTTA
641320 ATAGTCGGAAGACTATTTTATAACTTTTA
1 ATAGTCGGAAGACTATTTTATAACTTTTA
641349 ATAGT
1 ATAGT
641354 TAAAGGACTC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 2 0.06
29 30 0.94
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.40
Consensus pattern (29 bp):
ATAGTCGGAAGACTATTTTATAACTTTTA
Found at i:644101 original size:21 final size:21
Alignment explanation
Indices: 644075--644131 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
644065 GTTTCCAGAT
*
644075 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
*
644096 TCGCAATACGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
644117 TCGCAATGCGAACTT
1 TCGCAATGCGAACTT
644132 GGTTGCGATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTCGACTA
Found at i:644128 original size:42 final size:42
Alignment explanation
Indices: 644075--644367 Score: 194
Period size: 42 Copynumber: 7.3 Consensus size: 42
644065 GTTTCCAGAT
* *
644075 TCGCAACGCGAACTTCGACTATCGCAATACGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTATCGCAATGCGAACTTCGACTA
* * *
644117 TCGCAATGCGAACTT-G-GT-T-GCGAT----A-GTCGACTA
1 TCGCAATGCGAACTTCGACTATCGCAATGCGAACTTCGACTA
* * *
644150 TCGCAATGCGAA-TAT-GTA-AATCGAAATGCGAA-TAT-GTA-AA
1 TCGCAATGCGAACT-TCG-ACTATCGCAATGCGAACT-TCG-ACTA
* * *
644190 TCGCAATGCGATA-GTCGACTATCGCAATGCGAACATGGACTA
1 TCGCAATGCGA-ACTTCGACTATCGCAATGCGAACTTCGACTA
* * * *
644232 TCACAATGCGAACTTGGACTATCGCAATACGAA-TAT-GTA-AA
1 TCGCAATGCGAACTTCGACTATCGCAATGCGAACT-TCG-ACTA
* *
644273 TCGCAATGCGATA-GTCGACTATCGCAATGCGAACTTGGACTA
1 TCGCAATGCGA-ACTTCGACTATCGCAATGCGAACTTCGACTA
* *
644315 TCGCAACGCGAACTTCGACTATCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTATCGCAATGCGAACTTCGACTA
*
644357 TCGCATTGCGA
1 TCGCAATGCGA
644368 TTTACATATT
Statistics
Matches: 195, Mismatches: 31, Indels: 50
0.71 0.11 0.18
Matches are distributed among these distances:
32 1 0.01
33 21 0.11
34 1 0.01
35 1 0.01
36 3 0.02
38 4 0.02
39 1 0.01
40 17 0.09
41 52 0.27
42 94 0.48
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (42 bp):
TCGCAATGCGAACTTCGACTATCGCAATGCGAACTTCGACTA
Found at i:644215 original size:21 final size:20
Alignment explanation
Indices: 644135--644409 Score: 133
Period size: 21 Copynumber: 13.3 Consensus size: 20
644125 CGAACTTGGT
644135 TGCGATAGTCGACTATCGCAA
1 TGCGATA-TCGACTATCGCAA
* *
644156 TGCGAATAT-GTA-AATCGAAA
1 TGCG-ATATCG-ACTATCGCAA
*
644176 TGCGAATAT-GTA-AATCGCAA
1 TGCG-ATATCG-ACTATCGCAA
644196 TGCGATAGTCGACTATCGCAA
1 TGCGATA-TCGACTATCGCAA
* * *
644217 TGCGAACATGGACTATCACAA
1 TGCG-ATATCGACTATCGCAA
*
644238 TGCGA-ACTTGGACTATCGCAA
1 TGCGATA--TCGACTATCGCAA
* *
644259 TACGAATAT-GTA-AATCGCAA
1 TGCG-ATATCG-ACTATCGCAA
644279 TGCGATAGTCGACTATCGCAA
1 TGCGATA-TCGACTATCGCAA
*
644300 TGCGA-ACTTGGACTATCGCAA
1 TGCGATA--TCGACTATCGCAA
*
644321 CGCGA-ACTTCGACTATCGCAA
1 TGCGATA--TCGACTATCGCAA
* *
644342 CGCGA-ACTTCGACTATCGCAT
1 TGCGATA--TCGACTATCGCAA
* *
644363 TGCGAT-T-TACATATTCGCAT
1 TGCGATATCGAC-TA-TCGCAA
*
644383 TGCGATAGTCGACTATCGCAT
1 TGCGATA-TCGACTATCGCAA
644404 TGCGAT
1 TGCGAT
644410 TTACATATTC
Statistics
Matches: 213, Mismatches: 20, Indels: 42
0.77 0.07 0.15
Matches are distributed among these distances:
18 2 0.01
19 10 0.05
20 59 0.28
21 130 0.61
22 9 0.04
23 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (20 bp):
TGCGATATCGACTATCGCAA
Found at i:644281 original size:83 final size:83
Alignment explanation
Indices: 644169--644341 Score: 292
Period size: 83 Copynumber: 2.1 Consensus size: 83
644159 GAATATGTAA
* *
644169 ATCGAAATGCGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATGCGAACATGGACTATC
1 ATCGCAATACGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATGCGAACATGGACTATC
* *
644234 ACAATGCGAACTTGGACT
66 ACAACGCGAACTTCGACT
*
644252 ATCGCAATACGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTGGACTATC
1 ATCGCAATACGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATGCGAACATGGACTATC
*
644317 GCAACGCGAACTTCGACT
66 ACAACGCGAACTTCGACT
644335 ATCGCAA
1 ATCGCAA
644342 CGCGAACTTC
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (83 bp):
ATCGCAATACGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATGCGAACATGGACTATC
ACAACGCGAACTTCGACT
Found at i:644347 original size:104 final size:104
Alignment explanation
Indices: 644143--644409 Score: 305
Period size: 104 Copynumber: 2.6 Consensus size: 104
644133 GTTGCGATAG
* *
644143 TCGACTATCGCAATGCGAATATGTAAATCGAAATGCGAATA-T-GTA-AATCGCAATGCGATAGT
1 TCGACTATCGCAATGCGAATATGTAAATCGCAATGCG-ATAGTCG-ACTATCGCAATGCGATAGT
* * *
644205 CGACTATCGCAATGCGAACATGGACTATCACAATGCGAACT
64 CGACTATCGCAACGCGAACATCGACTATCACAACGCGAACT
* * * *
644246 TGGACTATCGCAATACGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATGCGA-ACTTG
1 TCGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATGCGATA-GTC
* *
644310 GACTATCGCAACGCGAACTTCGACTATCGCAACGCGAACT
65 GACTATCGCAACGCGAACATCGACTATCACAACGCGAACT
* * *
644350 TCGACTATCGCATTGCG-AT-T-TACATATTCGCATTGCGATAGTCGACTATCGCATTGCGAT
1 TCGACTATCGCAATGCGAATATGTA-A-A-TCGCAATGCGATAGTCGACTATCGCAATGCGAT
644410 TTACATATTC
Statistics
Matches: 140, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
101 2 0.01
102 5 0.04
103 40 0.29
104 93 0.66
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (104 bp):
TCGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATGCGATAGTCG
ACTATCGCAACGCGAACATCGACTATCACAACGCGAACT
Found at i:644382 original size:20 final size:20
Alignment explanation
Indices: 644357--644571 Score: 253
Period size: 20 Copynumber: 10.6 Consensus size: 20
644347 ACTTCGACTA
644357 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
*
644377 TCGCATTGCGATAGT-CGACTA-
1 TCGCATTGCGAT-TTAC-A-TAT
644398 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
* *
644418 TCGCATTGTGATAGT-CGACTA-
1 TCGCATTGCGAT-TTAC-A-TAT
*
644439 TCGCATTACGATTTACATAT
1 TCGCATTGCGATTTACATAT
644459 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
*
644479 TCGCATTGCGATAGT-CGACTA-
1 TCGCATTGCGAT-TTAC-A-TAT
*
644500 TCGCATTACGATTTACATAT
1 TCGCATTGCGATTTACATAT
644520 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
644540 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
644560 TCGCATTGCGAT
1 TCGCATTGCGAT
644572 AGTCCAAGTT
Statistics
Matches: 168, Mismatches: 12, Indels: 30
0.80 0.06 0.14
Matches are distributed among these distances:
19 6 0.04
20 114 0.68
21 42 0.25
22 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:644395 original size:41 final size:41
Alignment explanation
Indices: 644349--644571 Score: 243
Period size: 41 Copynumber: 5.5 Consensus size: 41
644339 CAACGCGAAC
644349 TTCGAC-TA-TCGCATTGCGATTTACATATTCGCATTGCGA
1 TTCGACATATTCGCATTGCGATTTACATATTCGCATTGCGA
*
644388 TAGTCGAC-TA-TCGCATTGCGATTTACATATTCGCATTGTGA
1 T--TCGACATATTCGCATTGCGATTTACATATTCGCATTGCGA
*
644429 TAGTCGAC-TA-TCGCATTACGATTTACATATTCGCATTGCGA
1 T--TCGACATATTCGCATTGCGATTTACATATTCGCATTGCGA
* * *
644470 TT-TACATATTCGCATTGCGATAGT-CGACTA-TCGCATTACGA
1 TTCGACATATTCGCATTGCGAT-TTAC-A-TATTCGCATTGCGA
*
644511 TT-TACATATTCGCATTGCGATTTACATATTCGCATTGCGA
1 TTCGACATATTCGCATTGCGATTTACATATTCGCATTGCGA
*
644551 TT-TACATATTCGCATTGCGAT
1 TTCGACATATTCGCATTGCGAT
644572 AGTCCAAGTT
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 6 0.04
40 45 0.27
41 111 0.67
42 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (41 bp):
TTCGACATATTCGCATTGCGATTTACATATTCGCATTGCGA
Found at i:644444 original size:21 final size:21
Alignment explanation
Indices: 644272--644511 Score: 123
Period size: 21 Copynumber: 11.6 Consensus size: 21
644262 GAATATGTAA
*
644272 ATCGCAATGCGATAGTCGACT
1 ATCGCATTGCGATAGTCGACT
* * *
644293 ATCGCAATGCGA-ACTTGGACT
1 ATCGCATTGCGATA-GTCGACT
** *
644314 ATCGCAACGCGA-ACTTCGACT
1 ATCGCATTGCGATA-GTCGACT
** *
644335 ATCGCAACGCGA-ACTTCGACT
1 ATCGCATTGCGATA-GTCGACT
*
644356 ATCGCATTGCGAT--T-TACAT
1 ATCGCATTGCGATAGTCGAC-T
644375 ATTCGCATTGCGATAGTCGACT
1 A-TCGCATTGCGATAGTCGACT
*
644397 ATCGCATTGCGAT--T-TACAT
1 ATCGCATTGCGATAGTCGAC-T
*
644416 ATTCGCATTGTGATAGTCGACT
1 A-TCGCATTGCGATAGTCGACT
* *
644438 ATCGCATTACGAT--T-TACAT
1 ATCGCATTGCGATAGTCGAC-T
*
644457 ATTCGCATTGCGAT--T-TACAT
1 A-TCGCATTGCGATAGTCGAC-T
644477 ATTCGCATTGCGATAGTCGACT
1 A-TCGCATTGCGATAGTCGACT
*
644499 ATCGCATTACGAT
1 ATCGCATTGCGAT
644512 TTACATATTC
Statistics
Matches: 185, Mismatches: 17, Indels: 34
0.78 0.07 0.14
Matches are distributed among these distances:
18 6 0.03
19 9 0.05
20 55 0.30
21 100 0.54
22 9 0.05
23 6 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (21 bp):
ATCGCATTGCGATAGTCGACT
Found at i:644464 original size:61 final size:61
Alignment explanation
Indices: 644398--644551 Score: 299
Period size: 61 Copynumber: 2.5 Consensus size: 61
644388 TAGTCGACTA
*
644398 TCGCATTGCGATTTACATATTCGCATTGTGATAGTCGACTATCGCATTACGATTTACATAT
1 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCGACTATCGCATTACGATTTACATAT
644459 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCGACTATCGCATTACGATTTACATAT
1 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCGACTATCGCATTACGATTTACATAT
644520 TCGCATTGCGATTTACATATTCGCATTGCGAT
1 TCGCATTGCGATTTACATATTCGCATTGCGAT
644552 TTACATATTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 92 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (61 bp):
TCGCATTGCGATTTACATATTCGCATTGCGATAGTCGACTATCGCATTACGATTTACATAT
Found at i:644585 original size:21 final size:21
Alignment explanation
Indices: 644559--644610 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
644549 GATTTACATA
644559 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
644580 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
*
644601 TTCGCGTTGC
1 TTCGCATTGC
644611 AAATCTGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:646859 original size:42 final size:43
Alignment explanation
Indices: 646788--647108 Score: 207
Period size: 43 Copynumber: 7.5 Consensus size: 43
646778 GAAAATAATT
* * * **
646788 AAATTAGGGATTTAAATTATAAAATTAAAAAGTATGATTG-AA
1 AAATTAGGGGTCTCAATTATAAAGGTAAAAAGTATGATTGAAA
* * *
646830 AAATTAGGGGTCTCAATTTTAAAGGTAAAAAATGA-GATTAAAAA
1 AAATTAGGGGTCTCAATTATAAAGGTAAAAAGT-ATGATT-GAAA
* * *
646874 AAATT-GAGGACTCAATTTTAAAGGTAAAAAG--TGAATT-AAA
1 AAATTAGGGGTCTCAATTATAAAGGTAAAAAGTATG-ATTGAAA
* **
646914 AGATTAGGGACCTCAATTATAAAGGTAAAAAGTGAT-ATTGAAA
1 AAATTAGGGGTCTCAATTATAAAGGTAAAAAGT-ATGATTGAAA
* * *
646957 AAATTAAGAG-CTCAATTATAAAGGTAAAAA-AATGAGATTGAAAA
1 AAATTAGGGGTCTCAATTATAAAGGTAAAAAGTAT--GATTG-AAA
** **
647001 AAATTA-GGGTCATCAATTATAAATATAAAAAAGTGGGATTGAAA
1 AAATTAGGGGTC-TCAATTATAAAGGT-AAAAAGTATGATTGAAA
** ** * *
647045 AAATTAATGGTCTCAATTATAAAAATAGAAAGTGTGATT-ATAA
1 AAATTAGGGGTCTCAATTATAAAGGTAAAAAGTATGATTGA-AA
*
647088 AAATT-GGGGACCTCAATTATA
1 AAATTAGGGG-TCTCAATTATA
647109 CATATAAAAA
Statistics
Matches: 224, Mismatches: 34, Indels: 41
0.75 0.11 0.14
Matches are distributed among these distances:
40 9 0.04
41 23 0.10
42 59 0.26
43 67 0.30
44 40 0.18
45 21 0.09
46 5 0.02
ACGTcount: A:0.50, C:0.05, G:0.17, T:0.28
Consensus pattern (43 bp):
AAATTAGGGGTCTCAATTATAAAGGTAAAAAGTATGATTGAAA
Found at i:646888 original size:43 final size:42
Alignment explanation
Indices: 646841--647108 Score: 211
Period size: 43 Copynumber: 6.2 Consensus size: 42
646831 AATTAGGGGT
*
646841 CTCAATTTTAAAGGTAAAAAATGAGATTAAAAAAAATTGAGGA-
1 CTCAATTATAAAGGTAAAAAATGAGATT-AAAAAAATT-AGGAC
* * *
646884 CTCAATTTTAAAGGTAAAAAGTGA-ATT-AAAAGATTAGGGAC
1 CTCAATTATAAAGGTAAAAAATGAGATTAAAAAAATTA-GGAC
* * * * *
646925 CTCAATTATAAAGGTAAAAAGTGATATTGAAAAAATTAAGAG
1 CTCAATTATAAAGGTAAAAAATGAGATTAAAAAAATTAGGAC
*
646967 CTCAATTATAAAGGTAAAAAAATGAGATTGAAAAAAATTAGGGTC
1 CTCAATTATAAAGGT-AAAAAATGAGATT-AAAAAAATTA-GGAC
* ** * * *
647012 ATCAATTATAAATATAAAAAAGTGGGATTGAAAAAATTAATGG-T
1 CTCAATTATAAAGGTAAAAAA-TGAGATTAAAAAAATT-A-GGAC
** * * * * *
647056 CTCAATTATAAAAATAGAAAGTGTGATTATAAAAATTGGGGAC
1 CTCAATTATAAAGGTAAAAAATGAGATTAAAAAAATT-AGGAC
647099 CTCAATTATA
1 CTCAATTATA
647109 CATATAAAAA
Statistics
Matches: 186, Mismatches: 29, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.01
40 10 0.05
41 23 0.12
42 25 0.13
43 65 0.35
44 40 0.22
45 22 0.12
ACGTcount: A:0.50, C:0.06, G:0.17, T:0.27
Consensus pattern (42 bp):
CTCAATTATAAAGGTAAAAAATGAGATTAAAAAAATTAGGAC
Found at i:647004 original size:44 final size:42
Alignment explanation
Indices: 646802--647067 Score: 245
Period size: 43 Copynumber: 6.2 Consensus size: 42
646792 TAGGGATTTA
** *
646802 AATTATAAAATTAAAAAGT-ATGATTG-AAAAATTAGGGGTCTC
1 AATTATAAAGGTAAAAAGTGA-GATTGAAAAAATTA-AGGTCTC
* * * * *
646844 AATTTTAAAGGTAAAAAATGAGATTAAAAAAAATTGAGGACTC
1 AATTATAAAGGTAAAAAGTGAGATT-GAAAAAATTAAGGTCTC
* * * *
646887 AATTTTAAAGGTAAAAAGTGA-ATT-AAAAGATTAGGGACCTC
1 AATTATAAAGGTAAAAAGTGAGATTGAAAAAATTAAGG-TCTC
*
646928 AATTATAAAGGTAAAAAGTGATATTGAAAAAATTAAGAG-CTC
1 AATTATAAAGGTAAAAAGTGAGATTGAAAAAATTAAG-GTCTC
* *
646970 AATTATAAAGGTAAAAAAATGAGATTGAAAAAAATTAGGGTCATC
1 AATTATAAAGGT-AAAAAGTGAGATTG-AAAAAATTAAGGTC-TC
** *
647015 AATTATAAATATAAAAAAGTGGGATTGAAAAAATTAATGGTCTC
1 AATTATAAAGGT-AAAAAGTGAGATTGAAAAAATTAA-GGTCTC
647059 AATTATAAA
1 AATTATAAA
647068 AATAGAAAGT
Statistics
Matches: 188, Mismatches: 24, Indels: 22
0.80 0.10 0.09
Matches are distributed among these distances:
40 9 0.05
41 23 0.12
42 40 0.21
43 48 0.26
44 39 0.21
45 29 0.15
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.27
Consensus pattern (42 bp):
AATTATAAAGGTAAAAAGTGAGATTGAAAAAATTAAGGTCTC
Found at i:647090 original size:87 final size:83
Alignment explanation
Indices: 646802--647161 Score: 301
Period size: 87 Copynumber: 4.2 Consensus size: 83
646792 TAGGGATTTA
* * * ** * *
646802 AATTATAAAATTAAAAAGTATGATTGAAAAATTAGGGGTCTCAATTTTAAAGGTAAAAAATGAGA
1 AATTATAAAAATAAAAAGTGTGATTAAAAAATTAGGGACCTCAATTATAAAGAT-AAAAATGAGA
* *
646867 TTAAAAAAAATTGAGGACTC
65 TT-GAAAAAATTAAGGACTC
* ** * * * *
646887 AATTTTAAAGGTAAAAAGTG-AATTAAAAGATTAGGGACCTCAATTATAAAGGTAAAAAGTGATA
1 AATTATAAAAATAAAAAGTGTGATTAAAAAATTAGGGACCTCAATTATAAAGATAAAAA-TGAGA
646951 TTGAAAAAATTAA-GAGCTC
65 TTGAAAAAATTAAGGA-CTC
** * * * * *
646970 AATTATAAAGGTAAAAAAATGAGATTGAAAAAAATTAGGGTCATCAATTATAAATATAAAAAAGT
1 AATTATAAAAAT-AAAAAGTGTGATT--AAAAAATTAGGGACCTCAATTATAAAGAT-AAAAA-T
* *
647035 GGGATTGAAAAAATTAATGGTCTC
61 GAGATTGAAAAAATTAA-GGACTC
* * * * * *
647059 AATTATAAAAATAGAAAGTGTGATTATAAAAATTGGGGACCTCAATTATACATATAAAAATAAAA
1 AATTATAAAAATAAAAAGTGTGATTA-AAAAATTAGGGACCTCAATTATAAAGATAAAAATGAGA
*
647124 TTGAAGAAAATAAAAGGACTC
65 TTGAA-AAAAT-TAAGGACTC
647145 AATTATAAAAATAAAAA
1 AATTATAAAAATAAAAA
647162 AATATAATAA
Statistics
Matches: 224, Mismatches: 39, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
82 2 0.01
83 28 0.12
84 40 0.18
85 26 0.12
86 32 0.14
87 50 0.22
88 32 0.14
89 13 0.06
90 1 0.00
ACGTcount: A:0.53, C:0.05, G:0.16, T:0.27
Consensus pattern (83 bp):
AATTATAAAAATAAAAAGTGTGATTAAAAAATTAGGGACCTCAATTATAAAGATAAAAATGAGAT
TGAAAAAATTAAGGACTC
Found at i:647172 original size:13 final size:13
Alignment explanation
Indices: 647154--647178 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
647144 CAATTATAAA
647154 AATAAAAAAATAT
1 AATAAAAAAATAT
647167 AATAAAAAAATA
1 AATAAAAAAATA
647179 GGGGGCTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AATAAAAAAATAT
Found at i:648256 original size:21 final size:21
Alignment explanation
Indices: 648230--648302 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
648220 GGTTCCAGAT
*
648230 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGAATA
*
648251 TCGCAATGCGAGCTTGGAATA
1 TCGCAATGCGAACTTGGAATA
*
648272 TCGCAATGCGAA-TATGTAA-A
1 TCGCAATGCGAACT-TGGAATA
648292 TCGCAATGCGA
1 TCGCAATGCGA
648303 TAGTCGAAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
20 13 0.28
21 34 0.72
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGAATA
Found at i:648352 original size:21 final size:21
Alignment explanation
Indices: 648292--648345 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
648282 AATATGTAAA
* *
648292 TCGCAATGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCCAAGT
*
648313 TCGCATTGCGGTAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
*
648334 TCGCGTTGCGAT
1 TCGCATTGCGAT
648346 TTTCCAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:648428 original size:21 final size:21
Alignment explanation
Indices: 648402--648484 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
648392 GATTTACATA
648402 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
648423 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
** * *
648444 TTCGCGCTGCGATTTATTCCAAA
1 TTCGCATTGCGA--TAGTCCAAG
648467 TTCG--TTGCGATAGTCCAA
1 TTCGCATTGCGATAGTCCAA
648485 AATCGCAACG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
19 7 0.13
21 35 0.67
23 10 0.19
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:649217 original size:21 final size:21
Alignment explanation
Indices: 649191--649428 Score: 190
Period size: 21 Copynumber: 11.4 Consensus size: 21
649181 ATTTTGGACT
*
649191 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
649212 ATCGCAATGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
649233 ATCGCAACGAACTTGGACT--
1 ATCGCAACGAACTTGGAATAA
* * *
649252 ATTGCAGCGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
*
649273 ATCGCAACGCGAACTTGGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
649294 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
649315 ATCGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
649336 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
*
649357 ATCGCAACGCGAACTTGGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
649378 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* * *
649399 ATCGCAATGAATTTAGAATAA
1 ATCGCAACGAACTTGGAATAA
649420 ATCGCAACG
1 ATCGCAACG
649429 CGAACTTCGA
Statistics
Matches: 176, Mismatches: 25, Indels: 32
0.76 0.11 0.14
Matches are distributed among these distances:
19 56 0.32
21 81 0.46
23 39 0.22
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (21 bp):
ATCGCAACGAACTTGGAATAA
Found at i:649286 original size:42 final size:42
Alignment explanation
Indices: 649233--649405 Score: 296
Period size: 42 Copynumber: 4.2 Consensus size: 42
649223 AACTTCGACT
* *
649233 ATCGCAA--CGAACTTGGACTATTGCAGCGAATTTGGAATAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
649273 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
* *
649315 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
649357 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
649399 ATCGCAA
1 ATCGCAA
649406 TGAATTTAGA
Statistics
Matches: 125, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
40 7 0.06
42 118 0.94
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (42 bp):
ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
Found at i:649354 original size:84 final size:82
Alignment explanation
Indices: 649233--649468 Score: 305
Period size: 84 Copynumber: 2.8 Consensus size: 82
649223 AACTTCGACT
* * * *
649233 ATCGCAACGAACTTGGACTATTGCAGCGAATTTGGAATAAATCGCAACGCGAACTTGGACTATCG
1 ATCGCAACGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCG
649298 CAACGAATTTGGAATAA
66 CAACGAATTTGGAATAA
649315 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTAT
1 ATCGCAA--CGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTAT
649380 CGCAACGAATTTGGAATAA
64 CGCAACGAATTTGGAATAA
* * * * * * *
649399 ATCGCAATGAATTTAGAATAAATCGCAACGCGAACTTCGACT--ATCGCAACGCGAACTTTGACT
1 ATCGCAACGAACTTCGACT--ATCGCAA--CGAACTTGGAATAAATCGCAACGCGAACTTGGACT
649462 ATCGCAA
62 ATCGCAA
649469 TGCGAATATG
Statistics
Matches: 137, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
82 15 0.11
84 112 0.82
86 10 0.07
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (82 bp):
ATCGCAACGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCG
CAACGAATTTGGAATAA
Found at i:649444 original size:21 final size:21
Alignment explanation
Indices: 649420--649474 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
649410 TTTAGAATAA
649420 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
*
649441 ATCGCAACGCGAACTTTGACT
1 ATCGCAACGCGAACTTCGACT
*
649462 ATCGCAATGCGAA
1 ATCGCAACGCGAA
649475 TATGTAAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:649466 original size:42 final size:42
Alignment explanation
Indices: 649212--649474 Score: 249
Period size: 42 Copynumber: 6.3 Consensus size: 42
649202 TTTGGAATAA
* *
649212 ATCGCAATGCGAACTTCGACT-ATCGCAA--CGAACTTGGACT
1 ATCGCAA-GCGAACTTGGAATAATCGCAACGCGAACTTGGACT
* *
649252 ATTGC-AGCGAATTTGGAATAAATCGCAACGCGAACTTGGACT
1 ATCGCAAGCGAACTTGGAAT-AATCGCAACGCGAACTTGGACT
* *
649294 ATCGCAA-CGAATTTGGAATAAATCGCAACGCGAACTTCGACT
1 ATCGCAAGCGAACTTGGAAT-AATCGCAACGCGAACTTGGACT
649336 ATCGCAA-CGAACTTGGAATAAATCGCAACGCGAACTTGGACT
1 ATCGCAAGCGAACTTGGAAT-AATCGCAACGCGAACTTGGACT
* * * * *
649378 ATCGCAA-CGAATTTGGAATAAATCGCAA--TGAATTTAGAAT
1 ATCGCAAGCGAACTTGGAAT-AATCGCAACGCGAACTTGGACT
* * *
649418 AAATCGCAACGCGAACTTCGACT-ATCGCAACGCGAACTTTGACT
1 --ATCGCAA-GCGAACTTGGAATAATCGCAACGCGAACTTGGACT
649462 ATCGCAATGCGAA
1 ATCGCAA-GCGAA
649475 TATGTAAATC
Statistics
Matches: 191, Mismatches: 21, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
38 10 0.05
39 1 0.01
40 19 0.10
42 143 0.75
43 1 0.01
44 17 0.09
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (42 bp):
ATCGCAAGCGAACTTGGAATAATCGCAACGCGAACTTGGACT
Found at i:649469 original size:63 final size:63
Alignment explanation
Indices: 649315--649470 Score: 210
Period size: 63 Copynumber: 2.5 Consensus size: 63
649305 TTTGGAATAA
* * * *
649315 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTTGACTATCGCAATGAACTTAGAATAAATCGCAACGCGAACTTCGACT
* *
649378 ATCGCAA--CGAA-TTTGGAATAAATCGCAATGAATTTAGAATAAATCGCAACGCGAACTTCGAC
1 ATCGCAACGCGAACTTT-GACT--ATCGCAATGAACTTAGAATAAATCGCAACGCGAACTTCGAC
649440 T
63 T
649441 ATCGCAACGCGAACTTTGACTATCGCAATG
1 ATCGCAACGCGAACTTTGACTATCGCAATG
649471 CGAATATGTA
Statistics
Matches: 80, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
60 2 0.03
61 7 0.09
63 61 0.76
65 7 0.09
66 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (63 bp):
ATCGCAACGCGAACTTTGACTATCGCAATGAACTTAGAATAAATCGCAACGCGAACTTCGACT
Found at i:651260 original size:57 final size:58
Alignment explanation
Indices: 651196--651330 Score: 152
Period size: 57 Copynumber: 2.4 Consensus size: 58
651186 GAAATTAAGA
* ** * * * *
651196 ATTTTATAGAATTGAAAAAAA-TAGGA-ACCCTCGGTTATAAATGTAGAAAGT-GAGACT
1 ATTTTATAAAATTGAAAAAAACTA--ATACCCTCAATTATAAAAGTAAAAAGTACAAACT
*
651253 ATTTTATAAAATT-AAAAAAACTAATACCCTCAATTATAAAAGTAAAAAGTACAAATT
1 ATTTTATAAAATTGAAAAAAACTAATACCCTCAATTATAAAAGTAAAAAGTACAAACT
651310 ATTTTATAAAATTGAAAAAAA
1 ATTTTATAAAATTGAAAAAAA
651331 ATTAGAGGCG
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
55 1 0.02
56 28 0.42
57 30 0.45
58 7 0.11
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (58 bp):
ATTTTATAAAATTGAAAAAAACTAATACCCTCAATTATAAAAGTAAAAAGTACAAACT
Found at i:651464 original size:2 final size:2
Alignment explanation
Indices: 651457--651537 Score: 80
Period size: 2 Copynumber: 41.5 Consensus size: 2
651447 CAGCTCTGAT
* *
651457 TA TA TA TA TA TA TA TA TA TA TA TG T- TCA T- TA -A AA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA
* *
651496 TA TA TA TA TT TCA TA TA TA TA TA TA TA TA TA TA TA TT TA TA T
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
651538 TTTTTTATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
1 4 0.06
2 61 0.91
3 2 0.03
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (2 bp):
TA
Found at i:654476 original size:2 final size:2
Alignment explanation
Indices: 654469--654526 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
654459 AGAAAAACAG
654469 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
654511 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
654527 TGTATCTTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:655133 original size:16 final size:16
Alignment explanation
Indices: 655112--655144 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
655102 GTATCGACTT
*
655112 CATTGTTAGAGTTATA
1 CATTGTTAGAGTCATA
655128 CATTGTTAGAGTCATA
1 CATTGTTAGAGTCATA
655144 C
1 C
655145 GATTTCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (16 bp):
CATTGTTAGAGTCATA
Found at i:670342 original size:60 final size:59
Alignment explanation
Indices: 670249--670362 Score: 140
Period size: 60 Copynumber: 1.9 Consensus size: 59
670239 ACCGTTGGGT
* * *
670249 GACCATTTTGTAACTTTCAATGGTAGAGAGACTCAACAAAGCAACATTATATAATTTACA
1 GACCATTTTGTAACTTTCAATAGTAGAGAGACTCAA-AAAACAACACTATATAATTTACA
* * * *
670309 GACCATTTTGTAACTTTTAATAGTCG-GCTGACTCAAAAAATAACACTATATAAT
1 GACCATTTTGTAACTTTCAATAGTAGAG-AGACTCAAAAAACAACACTATATAAT
670363 CAGGGACCAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
59 16 0.35
60 30 0.65
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (59 bp):
GACCATTTTGTAACTTTCAATAGTAGAGAGACTCAAAAAACAACACTATATAATTTACA
Found at i:671456 original size:30 final size:30
Alignment explanation
Indices: 671420--671483 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
671410 TCTGCATTTC
*
671420 CTTTGAGTAGGCTACAGACATGTTTTTGAA
1 CTTTGAGTAGGCTACAGACACGTTTTTGAA
671450 CTTTGAGTAGGCTACAGACACGTTTTTGAA
1 CTTTGAGTAGGCTACAGACACGTTTTTGAA
671480 CTTT
1 CTTT
671484 CTTTCGTGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.38
Consensus pattern (30 bp):
CTTTGAGTAGGCTACAGACACGTTTTTGAA
Found at i:683289 original size:27 final size:27
Alignment explanation
Indices: 683251--683310 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 27
683241 GAATATAGAA
683251 TTTTTTTGAAAAATTAATAGTTTT-AT
1 TTTTTTTGAAAAATTAATAGTTTTAAT
683277 TTTTTTTGAAAAATTAATAGTTTTAAT
1 TTTTTTTGAAAAATTAATAGTTTTAAT
683304 TTTTTTT
1 TTTTTTT
683311 CTAAATAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 24 0.73
27 9 0.27
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.62
Consensus pattern (27 bp):
TTTTTTTGAAAAATTAATAGTTTTAAT
Found at i:694958 original size:2 final size:2
Alignment explanation
Indices: 694951--694994 Score: 79
Period size: 2 Copynumber: 21.5 Consensus size: 2
694941 AATTATTTGA
694951 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC GTC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC -TC TC
694994 T
1 T
694995 GTTTGTGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 39 0.95
3 2 0.05
ACGTcount: A:0.00, C:0.48, G:0.02, T:0.50
Consensus pattern (2 bp):
TC
Found at i:699344 original size:2 final size:2
Alignment explanation
Indices: 699337--699365 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
699327 ATATAAAATA
699337 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
699366 TAATTTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:702545 original size:2 final size:2
Alignment explanation
Indices: 702538--702575 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
702528 TTATGGATGC
702538 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
702576 GTTGATATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:702961 original size:85 final size:85
Alignment explanation
Indices: 702871--703142 Score: 239
Period size: 85 Copynumber: 3.2 Consensus size: 85
702861 ACAAATAATT
* * * * ** *
702871 CATCAACCATGACTTGATGTCTTTGAATCTGAATCAGCAAGATCA-TTCCCTGATTTGACATCCT
1 CATCAATCACGACTTGATGTCCTCGAATCCAAAACAGCAAGATCACTT-CCTGATTTGACATCCT
*
702935 TAAACGAATG-AGCAAATCACA
65 CAAACGAA-GAAGCAAATCACA
* * * * *
702956 TATCAATCACGACTTGGTGTCCTCGAATCCAAAAGAGCAAGATTACTTCTTGATTTGACATCCTC
1 CATCAATCACGACTTGATGTCCTCGAATCCAAAACAGCAAGATCACTTCCTGATTTGACATCCTC
703021 AAACGAAGAAGCAAATCACA
66 AAACGAAGAAGCAAATCACA
** * ** ** *
703041 CATCAATCACGACTTGGCGTCCTCAAATCCAAAGGAGCAAGAT-TGTTCCTCGA-TTCAGCATCC
1 CATCAATCACGACTTGATGTCCTCGAATCCAAAACAGCAAGATCACTTCCT-GATTTGA-CATCC
* * *
703104 TCAAACGAA-AGAGTAAATTACC
64 TCAAACGAAGA-AGCAAATCACA
*
703126 CATCAATCATGACTTGA
1 CATCAATCACGACTTGA
703143 CATCCTCGGA
Statistics
Matches: 156, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
84 9 0.06
85 145 0.93
86 2 0.01
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (85 bp):
CATCAATCACGACTTGATGTCCTCGAATCCAAAACAGCAAGATCACTTCCTGATTTGACATCCTC
AAACGAAGAAGCAAATCACA
Found at i:703149 original size:85 final size:85
Alignment explanation
Indices: 702922--703315 Score: 291
Period size: 85 Copynumber: 4.6 Consensus size: 85
702912 ATCATTCCCT
* * * * **
702922 GATTTGACATCCTTAAACGAATGAGCAAATCACATATCAATCACGACTTGGTGTCCTCGAATCCA
1 GATTCGACATCCTCAAACGAAAGAGCAAATCACACATCAATCACGACTTGACGTCCTCGAATCCA
* * *
702987 AAAGAGCAAGATTACTT-CTT
66 AAGGAGCAAGATT-GTTCCTC
* * *
703007 GATTTGACATCCTCAAACG-AAGAAGCAAATCACACATCAATCACGACTTGGCGTCCTCAAATCC
1 GATTCGACATCCTCAAACGAAAG-AGCAAATCACACATCAATCACGACTTGACGTCCTCGAATCC
703071 AAAGGAGCAAGATTGTTCCTC
65 AAAGGAGCAAGATTGTTCCTC
* * * * * *
703092 GATTC-AGCATCCTCAAACGAAAGAGTAAATTACCCATCAATCATGACTTGACATCCTCGGATCC
1 GATTCGA-CATCCTCAAACGAAAGAGCAAATCACACATCAATCACGACTTGACGTCCTCGAATCC
* * * * *
703156 GAAGGAACAAGGTCGCTCCTC
65 AAAGGAGCAAGATTGTTCCTC
* * * * * * *
703177 GATTCGACACCCTCAATCGAAGGAGTAAATCATC-CATCAATCATGGCTTGAC-TCCTTGAA--C
1 GATTCGACATCCTCAAACGAAAGAGCAAATCA-CACATCAATCACGACTTGACGTCCTCGAATCC
* ** *
703238 ATGAAGGAGTAAGAGCGTTCCCC
65 A--AAGGAGCAAGATTGTTCCTC
* * * * * * * *
703261 GATTTGGCATCTTTAGACGAATA-AGCAAATCACCCATCAATCATGACTTGTCGTC
1 GATTCGACATCCTCAAACGAA-AGAGCAAATCACACATCAATCACGACTTGACGTC
703316 TTCAAATCTG
Statistics
Matches: 251, Mismatches: 47, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
82 1 0.00
83 1 0.00
84 63 0.25
85 181 0.72
86 5 0.02
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (85 bp):
GATTCGACATCCTCAAACGAAAGAGCAAATCACACATCAATCACGACTTGACGTCCTCGAATCCA
AAGGAGCAAGATTGTTCCTC
Found at i:704592 original size:16 final size:17
Alignment explanation
Indices: 704562--704595 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
704552 ATAATATTTT
704562 ATTTTTTTAGGAAAATAA
1 ATTTTTTTA-GAAAATAA
704580 ATTTTTTTA-AAAATAA
1 ATTTTTTTAGAAAATAA
704596 TAAATATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
18 9 0.56
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (17 bp):
ATTTTTTTAGAAAATAA
Found at i:704597 original size:19 final size:18
Alignment explanation
Indices: 704562--704600 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
704552 ATAATATTTT
**
704562 ATTTTTTTAGGAAAATAA
1 ATTTTTTTAAAAAAATAA
704580 ATTTTTTTAAAAATAATAA
1 ATTTTTTTAAAAA-AATAA
704599 AT
1 AT
704601 ATAATACCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (18 bp):
ATTTTTTTAAAAAAATAA
Found at i:706571 original size:20 final size:20
Alignment explanation
Indices: 706548--706599 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
706538 AACGCGATCC
706548 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
706568 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
706588 CCAAAATCGCAA
1 CCAGAATCGCAA
706600 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:706680 original size:20 final size:20
Alignment explanation
Indices: 706655--706848 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
706645 GATTTTCCAT
* *
706655 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
706675 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
706695 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
706715 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
706735 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
706755 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
706775 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
706795 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
706816 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
706836 AATCGCAACGCGA
1 AATCGCAACGCGA
706849 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:706700 original size:40 final size:39
Alignment explanation
Indices: 706651--706848 Score: 200
Period size: 40 Copynumber: 5.0 Consensus size: 39
706641 TTGCGATTTT
* ** *
706651 CCAT-AATCGCAACGCGAATATGAAAATCGCAACGCGAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
* *
706689 CACATAAATCGCAACGCGTATCCGTAAATCGCAACGTGTAT
1 C-CATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* ** * *
706730 CCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTAT
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* * **
706770 CCGTATATCGCAACGCGTATCCGTAAATCGCAACGATAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
*
706809 TACATAAAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 -CCAT-AAATCGCAACGCGTATCCGTAAATCGCAACGCGA
706849 TATTTAAAGC
Statistics
Matches: 132, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 94 0.71
41 33 0.25
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (39 bp):
CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
Found at i:706738 original size:60 final size:60
Alignment explanation
Indices: 706655--706847 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
706645 GATTTTCCAT
* ** * *
706655 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
706715 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* **
706775 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
706836 AATCGCAACGCG
1 AATCGCAACGCG
706848 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 80 0.72
61 31 0.28
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:707267 original size:33 final size:33
Alignment explanation
Indices: 707228--707298 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
707218 TTCACTTAGA
*
707228 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
707261 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
707294 TTTCA
1 TTTCA
707299 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:707438 original size:14 final size:14
Alignment explanation
Indices: 707419--707473 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
707409 AGAATGACTG
707419 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
707433 TCGCAACGCGAAATGAAAA
1 TCGCAA--CG--A-GAGAA
707452 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
707466 TCGCAACG
1 TCGCAACG
707474 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.42, C:0.24, G:0.25, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:707485 original size:33 final size:33
Alignment explanation
Indices: 707419--707486 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
707409 AGAATGACTG
**
707419 TCGCAACGAGAGAATCGCAACGCGAAATGAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
707452 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
707485 TC
1 TC
707487 ACATTGCGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.44, C:0.25, G:0.22, T:0.09
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:707512 original size:19 final size:18
Alignment explanation
Indices: 707490--707602 Score: 79
Period size: 14 Copynumber: 6.8 Consensus size: 18
707480 CAAAATCACA
707490 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCA-TTCGCG
*
707509 TTGCGA--TTC--TCTCG
1 TTGCGATTTTCATTCGCG
707523 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCA-TTCGCG
*
707542 TTGCGA--TTC--TCTCG
1 TTGCGATTTTCATTCGCG
*
707556 TTGCGATTGTCATCTCGCG
1 TTGCGATTTTCAT-TCGCG
*
707575 TTGCGA--TTC--TCTCG
1 TTGCGATTTTCATTCGCG
707589 TTGCGATTTTCATT
1 TTGCGATTTTCATT
707603 TCAACCAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 29
0.67 0.06 0.27
Matches are distributed among these distances:
14 30 0.41
16 8 0.11
17 8 0.11
18 1 0.01
19 26 0.36
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (18 bp):
TTGCGATTTTCATTCGCG
Found at i:707526 original size:14 final size:14
Alignment explanation
Indices: 707507--707596 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
707497 TTTCATTTCG
707507 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
707521 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
707540 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
707554 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
707571 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
707587 CGTTGCGATT
1 CGTTGCGATT
707597 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:707532 original size:33 final size:33
Alignment explanation
Indices: 707490--707604 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
707480 CAAAATCACA
707490 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
707523 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
707556 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
707589 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
707605 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:709595 original size:93 final size:93
Alignment explanation
Indices: 709303--709765 Score: 813
Period size: 93 Copynumber: 5.1 Consensus size: 93
709293 TAGATTGCTT
* *
709303 AGTAAATTTATTCGGTTACTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
709368 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
709396 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
709460 TTTGTCTTTGTTTTGTCTTTTGGTT---
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
709485 -G--AA--TGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACAATGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
709545 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
709573 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
709637 -TTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
709664 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
709729 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
709757 AGTAAATTT
1 AGTAAATTT
709766 ATCCATTCAA
Statistics
Matches: 353, Mismatches: 6, Indels: 22
0.93 0.02 0.06
Matches are distributed among these distances:
84 52 0.15
85 27 0.08
86 2 0.01
88 1 0.00
89 1 0.00
91 91 0.26
92 31 0.09
93 148 0.42
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:709609 original size:177 final size:179
Alignment explanation
Indices: 709313--709765 Score: 804
Period size: 177 Copynumber: 2.5 Consensus size: 179
709303 AGTAAATTTA
*
709313 TTCGGTTACTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
1 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
709378 TTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTT
66 TTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTT
709443 TAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTT-G-AA-TG
131 TAACACTGTGAAATATA-TTGTCTTTGTTTTGTCTTTTGGTTAGAAATTG
*
709490 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACAATGTGAAATAGTATTTGTCTTTG
1 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
*
709555 TTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTT
66 TTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTT
709620 TAACACTGTGAAATATATTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTG
131 TAACACTGTGAAATATATTGTCTTTGTTTTGTCTTTTGGTT---AG-AAA-TTG
709674 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
1 TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
709739 TTTTGTCTTTTGGTTGAAAGTAAATTT
66 TTTTGTCTTTTGGTTGAAAGTAAATTT
709766 ATCCATTCAA
Statistics
Matches: 264, Mismatches: 4, Indels: 9
0.95 0.01 0.03
Matches are distributed among these distances:
176 24 0.09
177 144 0.55
180 1 0.00
182 2 0.01
184 93 0.35
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.47
Consensus pattern (179 bp):
TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTG
TTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTT
TAACACTGTGAAATATATTGTCTTTGTTTTGTCTTTTGGTTAGAAATTG
Found at i:709849 original size:19 final size:19
Alignment explanation
Indices: 709809--709937 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
709799 TAGTTTACTT
* *
709809 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
709829 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
709848 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
709867 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
709881 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
709900 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
709914 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
709933 TCGCA
1 TCGCA
709938 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:709888 original size:33 final size:32
Alignment explanation
Indices: 709845--709937 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
709835 CGCGAAACCA
**
709845 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
709877 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
709910 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
709938 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:709935 original size:52 final size:52
Alignment explanation
Indices: 709809--709937 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
709799 TAGTTTACTT
**
709809 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
709861 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
709914 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
709938 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:709955 original size:19 final size:19
Alignment explanation
Indices: 709933--710067 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
709923 GAAACCAAAA
*
709933 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
709952 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
709968 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
709985 TCGCATTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
710001 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
710018 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
710037 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
710057 TCGTGTTGCGA
1 TCGCGTTGCGA
710068 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
15 3 0.03
16 8 0.08
17 8 0.08
18 3 0.03
19 46 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:709974 original size:14 final size:14
Alignment explanation
Indices: 709955--710011 Score: 53
Period size: 14 Copynumber: 3.7 Consensus size: 14
709945 TTTCATTTCG
709955 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
709969 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
709986 CGCATTGCGATT-TTGT
1 CG--TTGCGATTCTT-T
710002 CGTTGCGATT
1 CGTTGCGATT
710012 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
14 16 0.43
15 2 0.05
16 6 0.16
17 7 0.19
19 6 0.16
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:709980 original size:33 final size:33
Alignment explanation
Indices: 709938--710033 Score: 167
Period size: 33 Copynumber: 2.9 Consensus size: 33
709928 CAAAATCGCA
709938 TTGCGATTTTCATTTCGCGTTGCGATTCTT-TCG
1 TTGCGATTTTCATTTCGCGTTGCGATT-TTGTCG
*
709971 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
710004 TTGCGATTTTCATTTCGCGTTGCGATTTTG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTG
710034 GTTTCGCGTT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
32 2 0.03
33 58 0.97
ACGTcount: A:0.10, C:0.19, G:0.22, T:0.49
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:711990 original size:14 final size:14
Alignment explanation
Indices: 711971--712006 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
711961 ATTGTTTAAT
711971 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
711985 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
711999 TGATTTGT
1 TGATTTGT
712007 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:712129 original size:19 final size:19
Alignment explanation
Indices: 712113--712214 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
712103 AAAAATGACT
712113 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
712132 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
712151 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
712165 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
712184 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
712204 ATCGCAATGCG
1 ATCGCAATGCG
712215 TTTATAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
14 10 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 40 0.53
20 19 0.25
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:712267 original size:19 final size:19
Alignment explanation
Indices: 712243--712516 Score: 354
Period size: 19 Copynumber: 15.4 Consensus size: 19
712233 GATTATCTCG
712243 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
712262 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
712281 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
712295 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
712314 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
712333 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
712352 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
712371 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
712390 TTGCGA--TTC-TGTCG--
1 TTGCGATTTTCATTTCGCA
*
712404 TTGCAATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
712423 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
712442 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
712456 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
712476 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
712490 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
712509 TTGCGATT
1 TTGCGATT
712517 GTATTTTCCG
Statistics
Matches: 226, Mismatches: 8, Indels: 42
0.82 0.03 0.15
Matches are distributed among these distances:
14 28 0.12
16 24 0.11
17 21 0.09
18 3 0.01
19 138 0.61
20 12 0.05
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:712283 original size:52 final size:52
Alignment explanation
Indices: 712221--712488 Score: 437
Period size: 52 Copynumber: 5.0 Consensus size: 52
712211 TGCGTTTATA
*
712221 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
*
712273 ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
*
712325 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCATTGCGATTTTC
* *
712382 ATTTCGCATTGCGATTCTGTCGTTGCAATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
712434 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTC
712487 AT
1 AT
712489 GTTGGGATTT
Statistics
Matches: 204, Mismatches: 6, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
52 128 0.63
53 17 0.08
54 7 0.03
55 8 0.04
57 44 0.22
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.47
Consensus pattern (52 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
Found at i:712372 original size:109 final size:102
Alignment explanation
Indices: 712243--712483 Score: 176
Period size: 109 Copynumber: 2.3 Consensus size: 102
712233 GATTATCTCG
712243 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TTTCG-TTGCGATTTT
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG--TTGCGATTTCATTTCGATTGCGATTTT
*
712305 CATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCA
61 CATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCA
* *
712352 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TGTCG-TTGCAATTTT
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG--TTGCGATTTCATTTCGATTGCGATTTT
* * * * *
712414 CATTTCGCATTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCG
61 CATTTCGCATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCA
712456 TTGCGATTTTCATTTCCGCATTGCGATT
1 TTGCGATTTTCATTT-CGCATTGCGATT
712484 TTCATGTTGG
Statistics
Matches: 121, Mismatches: 7, Indels: 14
0.85 0.05 0.10
Matches are distributed among these distances:
102 7 0.06
103 6 0.05
104 20 0.17
105 11 0.09
107 2 0.02
109 75 0.62
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.47
Consensus pattern (102 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTCATTTCGATTGCGATTTTCATTT
CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
Found at i:714817 original size:12 final size:12
Alignment explanation
Indices: 714800--714824 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
714790 TCTTCGGGGA
714800 CTTTTTCTTCTT
1 CTTTTTCTTCTT
714812 CTTTTTCTTCTT
1 CTTTTTCTTCTT
714824 C
1 C
714825 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:715033 original size:24 final size:24
Alignment explanation
Indices: 714999--715045 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
714989 CTGAAACATC
714999 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
715023 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
715046 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:715756 original size:20 final size:20
Alignment explanation
Indices: 715728--716096 Score: 442
Period size: 20 Copynumber: 18.4 Consensus size: 20
715718 AAATTTAAGT
* * * *
715728 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
715748 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
715768 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
715788 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
715808 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
715828 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
*
715848 GTTGCAATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
715868 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
715888 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
715908 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
715928 GTTGC-AGTTTACGGATACGC
1 GTTGCGA-TTTACGGATACGC
715948 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
715968 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
715988 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
716008 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
716028 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
716048 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
716068 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
716088 GTTGCGATT
1 GTTGCGATT
716097 ATGGAAAATC
Statistics
Matches: 307, Mismatches: 32, Indels: 20
0.86 0.09 0.06
Matches are distributed among these distances:
19 6 0.02
20 295 0.96
21 6 0.02
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:725009 original size:56 final size:57
Alignment explanation
Indices: 724898--725024 Score: 156
Period size: 56 Copynumber: 2.2 Consensus size: 57
724888 ATTCTTGGGT
*
724898 AAAGTATAC-AAATGGTCCCGACTATAGAGTGTTACTTTGTTGAGTTCTTCGACTATTA
1 AAAGT-TACAAAATGGTCCCGACTATAGAGTGTTA-TTTGTTGAGTTCTTCAACTATTA
*
724956 GAAGTTACAAAATGGTCCCCGACTATAG-GATG-T-TTTGTTGAG-TCTTTCAACTATTA
1 AAAGTTACAAAATGGT-CCCGACTATAGAG-TGTTATTTGTTGAGTTC-TTCAACTATTA
725012 AAAGTTACAAAAT
1 AAAGTTACAAAAT
725025 AATCATTAGA
Statistics
Matches: 62, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
55 2 0.03
56 31 0.50
57 3 0.05
58 13 0.21
59 13 0.21
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (57 bp):
AAAGTTACAAAATGGTCCCGACTATAGAGTGTTATTTGTTGAGTTCTTCAACTATTA
Found at i:731344 original size:35 final size:35
Alignment explanation
Indices: 731298--731364 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
731288 GAAAGATAGA
731298 CTCTCGATAAAGCTTATGTAGGGTCAGGGCTTAGT
1 CTCTCGATAAAGCTTATGTAGGGTCAGGGCTTAGT
*
731333 CTCTCGATAAAGCTTATGTCGGGTCAGGGCTT
1 CTCTCGATAAAGCTTATGTAGGGTCAGGGCTT
731365 GTGCATCTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (35 bp):
CTCTCGATAAAGCTTATGTAGGGTCAGGGCTTAGT
Done.