Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008526.1 Hibiscus syriacus cultivar Beakdansim tig00111398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3043201
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 12
Found at i:903024 original size:12 final size:12
Alignment explanation
Indices: 903007--903041 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
902997 CAGGTTGACT
903007 TCTACCTCTTCC
1 TCTACCTCTTCC
903019 TCTACCTCTTCC
1 TCTACCTCTTCC
903031 TCTACCTCTTC
1 TCTACCTCTTC
903042 TCCTTTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.49, G:0.00, T:0.43
Consensus pattern (12 bp):
TCTACCTCTTCC
Found at i:904943 original size:26 final size:26
Alignment explanation
Indices: 904880--904948 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
904870 AGGCTATGAA
904880 ATTTGTCCCGAAGGACCTATGACTGT
1 ATTTGTCCCGAAGGACCTATGACTGT
* *
904906 ATTTATCTCGAAGGACCTATGACTGT
1 ATTTGTCCCGAAGGACCTATGACTGT
*
904932 ATTTGTCCCGAATGACC
1 ATTTGTCCCGAAGGACC
904949 ACTCCTTAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (26 bp):
ATTTGTCCCGAAGGACCTATGACTGT
Found at i:907102 original size:20 final size:20
Alignment explanation
Indices: 907065--907103 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
907055 ATCCTTTTCA
*
907065 TAATTTTTGATTAAATTTAT
1 TAATTTATGATTAAATTTAT
* *
907085 TAATTTATGTTTATATTTA
1 TAATTTATGATTAAATTTA
907104 ATTCTATATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
TAATTTATGATTAAATTTAT
Found at i:920184 original size:34 final size:35
Alignment explanation
Indices: 920121--920203 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 35
920111 TTTTCACCCT
** *
920121 AAACCCGACCCGACCCGAACAGTACA-TTTTAAAA
1 AAACCCGACCCGACCCGAACACAAAATTTTTAAAA
*
920155 AAACCCGACCCGACCCGAACCCAAAATTTTTTAAAA
1 AAACCCGACCCGACCCGAACACAAAA-TTTTTAAAA
*
920191 AAATCCGACCCGA
1 AAACCCGACCCGA
920204 TCGGGTCGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
34 22 0.52
36 20 0.48
ACGTcount: A:0.41, C:0.34, G:0.11, T:0.14
Consensus pattern (35 bp):
AAACCCGACCCGACCCGAACACAAAATTTTTAAAA
Found at i:926516 original size:48 final size:48
Alignment explanation
Indices: 926464--926557 Score: 116
Period size: 48 Copynumber: 2.0 Consensus size: 48
926454 TCCAATTTGA
* * * * *
926464 ATTCTGTTATGATACCTGAGATGGATTCTGATCTGATACTTGACCTAG
1 ATTCTGATACGATACCTGACATGAATTCTGATATGATACTTGACCTAG
* * *
926512 ATTCTGATCCGATACTTGACATGAATTTTGATATGATACTTGACCT
1 ATTCTGATACGATACCTGACATGAATTCTGATATGATACTTGACCT
926558 GAATTATGTT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (48 bp):
ATTCTGATACGATACCTGACATGAATTCTGATATGATACTTGACCTAG
Found at i:926560 original size:24 final size:24
Alignment explanation
Indices: 926461--926562 Score: 98
Period size: 24 Copynumber: 4.2 Consensus size: 24
926451 ATTTCCAATT
* * * **
926461 TGAATTCTGTTATGATACCTGAGA
1 TGAATTCTGATCTGATACTTGACC
*
926485 TGGATTCTGATCTGATACTTGACC
1 TGAATTCTGATCTGATACTTGACC
* *
926509 T-AGATTCTGATCCGATACTTGACA
1 TGA-ATTCTGATCTGATACTTGACC
* *
926533 TGAATTTTGATATGATACTTGACC
1 TGAATTCTGATCTGATACTTGACC
926557 TGAATT
1 TGAATT
926563 ATGTTTTGAT
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
24 62 0.98
25 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (24 bp):
TGAATTCTGATCTGATACTTGACC
Found at i:931160 original size:39 final size:39
Alignment explanation
Indices: 931112--931195 Score: 168
Period size: 39 Copynumber: 2.2 Consensus size: 39
931102 TCAATACAAA
931112 TCCCATATCCACCCGGAAAGGACTCGATCAAACCCCTAC
1 TCCCATATCCACCCGGAAAGGACTCGATCAAACCCCTAC
931151 TCCCATATCCACCCGGAAAGGACTCGATCAAACCCCTAC
1 TCCCATATCCACCCGGAAAGGACTCGATCAAACCCCTAC
931190 TCCCAT
1 TCCCAT
931196 TTTCCTCAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.30, C:0.42, G:0.12, T:0.17
Consensus pattern (39 bp):
TCCCATATCCACCCGGAAAGGACTCGATCAAACCCCTAC
Found at i:933315 original size:26 final size:27
Alignment explanation
Indices: 933286--933336 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
933276 ATTGGATTGA
933286 ATGAAAGGA-CTGAAATA-CCCTAAATG
1 ATGAAAGGATC-GAAATATCCCTAAATG
*
933312 ATGAAATGATCGAAATATCCCTAAA
1 ATGAAAGGATCGAAATATCCCTAAA
933337 ACCTTGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.22
Consensus pattern (27 bp):
ATGAAAGGATCGAAATATCCCTAAATG
Found at i:933347 original size:28 final size:28
Alignment explanation
Indices: 933313--933388 Score: 127
Period size: 28 Copynumber: 2.8 Consensus size: 28
933303 CCCTAAATGA
933313 TGAAATGATCGAAATATCCCTAAAACCT
1 TGAAATGATCGAAATATCCCTAAAACCT
* *
933341 TGAAATGATTGAAATATCTCTAAAACCT
1 TGAAATGATCGAAATATCCCTAAAACCT
933369 TGAAATGATCGAAATA-CCCT
1 TGAAATGATCGAAATATCCCT
933389 TATATTTCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 3 0.07
28 41 0.93
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (28 bp):
TGAAATGATCGAAATATCCCTAAAACCT
Found at i:934515 original size:32 final size:31
Alignment explanation
Indices: 934474--934594 Score: 107
Period size: 32 Copynumber: 3.8 Consensus size: 31
934464 CCTAAGGTGA
* *
934474 CCTTGGGTAGGCTCTGAGGCCCCAAGGCATTT
1 CCTTGGGTAGGCTCTAAGGCCCCAAGGTA-TT
** *
934506 CCTTGGGTAGGCTCTAAGGCTTCAAGGTACTC
1 CCTTGGGTAGGCTCTAAGGCCCCAAGGTA-TT
* * * * *
934538 CCGTGGGTAGGCTTTTAGGCCCTAAGGTACT
1 CCTTGGGTAGGCTCTAAGGCCCCAAGGTATT
* *
934569 CTCTTGGGTAGGCTTTCAGGCCCCAA
1 C-CTTGGGTAGGCTCTAAGGCCCCAA
934595 TATACTTCCT
Statistics
Matches: 71, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
31 1 0.01
32 70 0.99
ACGTcount: A:0.17, C:0.26, G:0.30, T:0.27
Consensus pattern (31 bp):
CCTTGGGTAGGCTCTAAGGCCCCAAGGTATT
Found at i:940409 original size:2 final size:2
Alignment explanation
Indices: 940402--940466 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
940392 GTCTGTGAGA
940402 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
940444 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
940467 GAGAGAGAGA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:940471 original size:2 final size:2
Alignment explanation
Indices: 940466--940491 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
940456 ATATATATAT
940466 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
940492 GAAAAGCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:943708 original size:34 final size:36
Alignment explanation
Indices: 943670--943738 Score: 90
Period size: 34 Copynumber: 2.0 Consensus size: 36
943660 TTATACCTAC
*
943670 ATTATGCAATTTA-AGTTTTTA-A-TTTTATGTTTGA
1 ATTATGCAATTTAGA-TTTTTATACTTTTAAGTTTGA
*
943704 ATTATGTAATTTAGATTTTTATACTTTTAAGTTTG
1 ATTATGCAATTTAGATTTTTATACTTTTAAGTTTG
943739 GCTACTTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 18 0.60
35 2 0.07
36 10 0.33
ACGTcount: A:0.29, C:0.03, G:0.12, T:0.57
Consensus pattern (36 bp):
ATTATGCAATTTAGATTTTTATACTTTTAAGTTTGA
Found at i:954472 original size:60 final size:60
Alignment explanation
Indices: 954298--954462 Score: 190
Period size: 60 Copynumber: 2.8 Consensus size: 60
954288 AAAAATAAAC
* * * * * *
954298 ATTCAAAAGTTTA-AGAACTAATATAAACTAAAGATCATAATTTGAGGATAGATTTGAAAT
1 ATTCAAAAGTTTAGA-AATTAATTTAAAATAAAAATCATAATTTGAGGATAGAATTAAAAT
* * *
954358 GTTCAAAAGTTTAGAAATTAATTTAAAATAAGAGTCATAATTTGAGGATAGAATTAAAAT
1 ATTCAAAAGTTTAGAAATTAATTTAAAATAAAAATCATAATTTGAGGATAGAATTAAAAT
* **
954418 ATTCATAAGTTTA-ATAATTAATTTAGGATAAAAATCATAATTTGA
1 ATTCAAAAGTTTAGA-AATTAATTTAAAATAAAAATCATAATTTGA
954463 ATTTAGAATT
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
59 1 0.01
60 86 0.98
61 1 0.01
ACGTcount: A:0.48, C:0.05, G:0.13, T:0.35
Consensus pattern (60 bp):
ATTCAAAAGTTTAGAAATTAATTTAAAATAAAAATCATAATTTGAGGATAGAATTAAAAT
Found at i:956506 original size:4 final size:4
Alignment explanation
Indices: 956497--956593 Score: 51
Period size: 4 Copynumber: 25.0 Consensus size: 4
956487 TTTCCTCATC
* * * *
956497 TTAT TTAT TTAG TTAT CTAT TTAT TTA- TT-T TTCT TTA- TT-T TTCT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
* * * * **
956541 TTAT CT-T TGAT TTAT TTACT CATAT TTGT TTAT TTAT TTAT CCAT TTAT
1 TTAT TTAT TTAT TTAT TTA-T -TTAT TTAT TTAT TTAT TTAT TTAT TTAT
956590 TTAT
1 TTAT
956594 GTATATTGTC
Statistics
Matches: 68, Mismatches: 18, Indels: 14
0.68 0.18 0.14
Matches are distributed among these distances:
3 9 0.13
4 55 0.81
5 2 0.03
6 2 0.03
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (4 bp):
TTAT
Found at i:956535 original size:10 final size:10
Alignment explanation
Indices: 956520--956544 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
956510 TATCTATTTA
956520 TTTATTTTTC
1 TTTATTTTTC
956530 TTTATTTTTC
1 TTTATTTTTC
956540 TTTAT
1 TTTAT
956545 CTTTGATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTATTTTTC
Found at i:967061 original size:17 final size:17
Alignment explanation
Indices: 967039--967077 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
967029 TCCTAAGTTG
967039 AAAAAA-AAACAAAAAAC
1 AAAAAACAAA-AAAAAAC
967056 AAAAAACAAAAAAAAAC
1 AAAAAACAAAAAAAAAC
967073 AAAAA
1 AAAAA
967078 GAGAAGAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAACAAAAAAAAAC
Found at i:967077 original size:7 final size:7
Alignment explanation
Indices: 967042--967068 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
967032 TAAGTTGAAA
967042 AAAAAAC
1 AAAAAAC
967049 AAAAAAC
1 AAAAAAC
967056 AAAAAAC
1 AAAAAAC
967063 AAAAAA
1 AAAAAA
967069 AAACAAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:968082 original size:105 final size:105
Alignment explanation
Indices: 967900--968572 Score: 1022
Period size: 105 Copynumber: 6.4 Consensus size: 105
967890 AGGTTTTACC
* * *
967900 CAGAGCCAATTTCAACTTCACAAAGAAGAATATTGGACTCCAGACAACGCATGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
967965 ACGAAGGGACCGCTAGTTGTCAATAAACATTTCTTAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
968005 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCATG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
968070 ACGAAGGGACCGCTGGTTGTCAACAAATATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
968110 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCATGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
968175 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
968215 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
**
968280 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAGCTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* ***
968320 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAGTACAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
** ** *
968385 ACGAAGGGACCGCTGACTGTCAACCGACAACTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
* * *
968426 CAAGAGCCAATTTCAACTTCACAACGAATGATATTGGACTCCGGACAACACAAGTTCAACTTCAC
1 C-AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCAC
* * * * *
968491 GACGAAGGGACCGTTAGTTGTCAACAAACAATTTCCCAGTTC
65 GACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
* * * *
968533 CAGAACCAGTTTCAACTTCACAGCGGAGGATATTGGACTC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
968573 GGGACAATAC
Statistics
Matches: 519, Mismatches: 47, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
105 384 0.74
106 44 0.08
107 91 0.18
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
Found at i:970819 original size:4 final size:4
Alignment explanation
Indices: 970810--970906 Score: 51
Period size: 4 Copynumber: 25.0 Consensus size: 4
970800 TTTCCTCATC
* * * *
970810 TTAT TTAT TTAG TTAT CTAT TTAT TTA- TT-T TTCT TTA- TT-T TTCT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
* * * * **
970854 TTAT CT-T TGAT TTAT TTACT CATAT TTGT TTAT TTAT TTAT CCAT TTAT
1 TTAT TTAT TTAT TTAT TTA-T -TTAT TTAT TTAT TTAT TTAT TTAT TTAT
970903 TTAT
1 TTAT
970907 GTATATTGTC
Statistics
Matches: 68, Mismatches: 18, Indels: 14
0.68 0.18 0.14
Matches are distributed among these distances:
3 9 0.13
4 55 0.81
5 2 0.03
6 2 0.03
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (4 bp):
TTAT
Found at i:970848 original size:10 final size:10
Alignment explanation
Indices: 970833--970857 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
970823 TATCTATTTA
970833 TTTATTTTTC
1 TTTATTTTTC
970843 TTTATTTTTC
1 TTTATTTTTC
970853 TTTAT
1 TTTAT
970858 CTTTGATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTATTTTTC
Found at i:971560 original size:19 final size:20
Alignment explanation
Indices: 971524--971561 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
971514 TTGTACTTTA
*
971524 GGGTTTGTGGTATGATTTTT
1 GGGTTTGTGGTATAATTTTT
971544 GGGTTTG-GGTATAATTTT
1 GGGTTTGTGGTATAATTTT
971562 GAATTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.13, C:0.00, G:0.34, T:0.53
Consensus pattern (20 bp):
GGGTTTGTGGTATAATTTTT
Found at i:971630 original size:40 final size:40
Alignment explanation
Indices: 971586--971680 Score: 190
Period size: 40 Copynumber: 2.4 Consensus size: 40
971576 TTTGAATTAT
971586 ATATTAATAAAATAATAATAAAAATGTCATGTCACAAAAA
1 ATATTAATAAAATAATAATAAAAATGTCATGTCACAAAAA
971626 ATATTAATAAAATAATAATAAAAATGTCATGTCACAAAAA
1 ATATTAATAAAATAATAATAAAAATGTCATGTCACAAAAA
971666 ATATTAATAAAATAA
1 ATATTAATAAAATAA
971681 GTTAAAGTGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.28
Consensus pattern (40 bp):
ATATTAATAAAATAATAATAAAAATGTCATGTCACAAAAA
Found at i:972941 original size:14 final size:14
Alignment explanation
Indices: 972922--972978 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
972912 GCGAAATTAA
*
972922 AATCGCAACGACAG
1 AATCGCAACGAAAG
972936 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
972953 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
972969 AATCGCAACG
1 AATCGCAACG
972979 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:972949 original size:33 final size:33
Alignment explanation
Indices: 972903--972995 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
972893 GCGAAACCAA
* *
972903 AATCGCAACGCGAAATTAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
972936 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
972969 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
972996 TGCGATTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:972960 original size:19 final size:19
Alignment explanation
Indices: 972866--973000 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
972856 TAGTTTACTT
* *
972866 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
972886 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
*
972905 TCGCAACGCGAAATTAAAA
1 TCGCAACGCGAAATGAAAA
*
972924 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
972938 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
972957 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
972971 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
972990 TCGCAATGCGA
1 TCGCAACGCGA
973001 TTTTGGTTTC
Statistics
Matches: 96, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
14 16 0.17
16 10 0.10
17 11 0.11
19 47 0.49
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.12
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:973018 original size:19 final size:19
Alignment explanation
Indices: 972996--973124 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
972986 AAAATCGCAA
972996 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
973015 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
973029 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
973048 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
973062 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
973081 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
973100 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
973120 TGCGA
1 TGCGA
973125 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:973038 original size:33 final size:33
Alignment explanation
Indices: 972996--973087 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
972986 AAAATCGCAA
972996 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
973029 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
973062 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
973088 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:973441 original size:92 final size:93
Alignment explanation
Indices: 973168--973639 Score: 903
Period size: 93 Copynumber: 5.1 Consensus size: 93
973158 TTGAATGGAT
973168 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
973233 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
973261 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
973326 AGTTTAGCAGAATTGGCATCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
973354 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
973418 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
973446 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
973510 AGTTTAGCAGAATTAGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
973538 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
973603 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
973631 AAATTTACT
1 AAATTTACT
973640 AAGCAATCTA
Statistics
Matches: 373, Mismatches: 5, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
92 182 0.49
93 191 0.51
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:973481 original size:185 final size:185
Alignment explanation
Indices: 973168--973639 Score: 901
Period size: 185 Copynumber: 2.6 Consensus size: 185
973158 TTGAATGGAT
973168 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
973233 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
* *
973298 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCATCAACCGAAC
131 TA-TATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTAGCAGCAACCGAAC
973354 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
973418 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
973483 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTAGCAGCAACCGAAC
131 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTAGCAGCAACCGAAC
973538 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
973603 AGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACT
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
973640 AAGCAATCTA
Statistics
Matches: 282, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
184 90 0.32
185 153 0.54
186 39 0.14
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (185 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTAGCAGCAACCGAAC
Found at i:975364 original size:14 final size:14
Alignment explanation
Indices: 975345--975434 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
975335 TTGAAATGAA
975345 AATCGCAACGAGAG
1 AATCGCAACGAGAG
975359 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
975376 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
975392 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
975411 AATCGCAACGAGAG
1 AATCGCAACGAGAG
975425 AATCGCAACG
1 AATCGCAACG
975435 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:975382 original size:33 final size:33
Alignment explanation
Indices: 975337--975451 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
975327 TCTTTTGGTT
975337 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
975370 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
975403 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
975436 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
975452 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:975383 original size:19 final size:18
Alignment explanation
Indices: 975344--975456 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
975334 GTTGAAATGA
975344 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
975359 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
975376 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
975392 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
975409 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
975425 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
975442 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
975457 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:975487 original size:14 final size:14
Alignment explanation
Indices: 975468--975522 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
975458 TTTGGTTTCG
975468 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
975482 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
975501 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
975515 CGTTGCGA
1 CGTTGCGA
975523 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:975500 original size:33 final size:33
Alignment explanation
Indices: 975452--975522 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
975442 AAAATCGCAA
**
975452 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
975485 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
975518 TGCGA
1 TGCGA
975523 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:975530 original size:33 final size:33
Alignment explanation
Indices: 975463--975544 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
975453 GCGATTTTGG
***
975463 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
975496 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
975529 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
975545 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:975549 original size:20 final size:20
Alignment explanation
Indices: 975475--975563 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
975465 TCGCGTTGCG
975475 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
975495 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
975508 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
975528 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
975548 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
975564 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:975685 original size:33 final size:33
Alignment explanation
Indices: 975643--975713 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
975633 AATACTAACT
*
975643 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
975676 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
975709 TGAAA
1 TGAAA
975714 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:975947 original size:22 final size:22
Alignment explanation
Indices: 975895--975949 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
975885 TGGTTGTGAG
**
975895 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
975917 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
975939 GGATTTCTTCG
1 GGATTTCTTCG
975950 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:976120 original size:20 final size:20
Alignment explanation
Indices: 976095--976287 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
976085 CTTTAAATAT
976095 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
976115 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
976137 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
976156 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
976176 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
976196 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
976216 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
976236 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
976256 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
976276 CGCGTTGCGATT
1 CGCGTTGCGATT
976288 ATGGAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 127 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:976282 original size:60 final size:60
Alignment explanation
Indices: 976095--976287 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
976085 CTTTAAATAT
**
976095 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
976156 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
976216 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
976276 CGCGTTGCGATT
1 CGCGTTGCGATT
976288 ATGGAAAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 83 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:976368 original size:20 final size:20
Alignment explanation
Indices: 976343--976394 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
976333 AAGAATCGCG
*
976343 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
976363 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
976383 TTGCGATTCTGG
1 TTGCGATTCTGG
976395 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:976683 original size:20 final size:20
Alignment explanation
Indices: 976658--976695 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
976648 TGAAGTTTTA
*
976658 AAAATAATAAATTGGTCACT
1 AAAATAATAAATAGGTCACT
*
976678 AAAATATTAAATAGGTCA
1 AAAATAATAAATAGGTCA
976696 TTGAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.29
Consensus pattern (20 bp):
AAAATAATAAATAGGTCACT
Found at i:978834 original size:43 final size:46
Alignment explanation
Indices: 978787--978877 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 46
978777 TTTTGTTCCT
978787 TTTTTTACATACTTAT-G-C-TGTTGATGCTCACACAAACAATCTC
1 TTTTTTACATACTTATAGTCGTGTTGATGCTCACACAAACAATCTC
*
978830 TTTTTTACATACTTATGCAGTCGTGTTGATGCTCACACAAATAATCTC
1 TTTTTTACATACTTAT--AGTCGTGTTGATGCTCACACAAACAATCTC
978878 ACGATATTTG
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
43 16 0.38
46 1 0.02
47 1 0.02
48 24 0.57
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (46 bp):
TTTTTTACATACTTATAGTCGTGTTGATGCTCACACAAACAATCTC
Found at i:984094 original size:23 final size:23
Alignment explanation
Indices: 984068--984111 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
984058 ATTACTATGT
*
984068 TTTATGACACATTTTTTTCTATC
1 TTTATGACACATTTTTCTCTATC
*
984091 TTTATGACATATTTTTCTCTA
1 TTTATGACACATTTTTCTCTA
984112 CATTTTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.57
Consensus pattern (23 bp):
TTTATGACACATTTTTCTCTATC
Found at i:985100 original size:14 final size:14
Alignment explanation
Indices: 985081--985123 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
985071 AAATCACACT
985081 TTAAATTAAATTAA
1 TTAAATTAAATTAA
*
985095 TTAAATT-TATTGAA
1 TTAAATTAAATT-AA
985109 TTAAATTAAAATTAA
1 TTAAATT-AAATTAA
985124 GAACAAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
13 3 0.12
14 16 0.67
15 2 0.08
16 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
TTAAATTAAATTAA
Found at i:997157 original size:24 final size:24
Alignment explanation
Indices: 997093--997157 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
997083 GAGAATCAAG
* ** *
997093 TAAAAGAACTTATAAACGAGATAA
1 TAAACGAACTTATAAATAAAATAA
997117 TAAAC-AAGCTTATAAATAAAATAA
1 TAAACGAA-CTTATAAATAAAATAA
997141 TAAACGAACTTATAAAT
1 TAAACGAACTTATAAAT
997158 GAGTCGAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
23 2 0.06
24 31 0.89
25 2 0.06
ACGTcount: A:0.58, C:0.09, G:0.08, T:0.25
Consensus pattern (24 bp):
TAAACGAACTTATAAATAAAATAA
Found at i:1011080 original size:15 final size:15
Alignment explanation
Indices: 1011036--1011069 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
1011026 TCATCCGTCC
*
1011036 AATTGAATTAATTAA
1 AATTAAATTAATTAA
1011051 AATTAAATTAATTAA
1 AATTAAATTAATTAA
1011066 AATT
1 AATT
1011070 TTAATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
AATTAAATTAATTAA
Found at i:1011351 original size:16 final size:16
Alignment explanation
Indices: 1011327--1011360 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1011317 ATTACATAAC
1011327 ATATATAATATATTTA
1 ATATATAATATATTTA
* *
1011343 ATATTTAATATTTTTA
1 ATATATAATATATTTA
1011359 AT
1 AT
1011361 TAATTAATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATATAATATATTTA
Found at i:1012731 original size:20 final size:20
Alignment explanation
Indices: 1012706--1012754 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
1012696 TAATTCGATT
1012706 AATTAACCAATTTAAAATCG
1 AATTAACCAATTTAAAATCG
*
1012726 AATTAACCAATTTAGAATCG
1 AATTAACCAATTTAAAATCG
1012746 AATTAACCA
1 AATTAACCA
1012755 TTAACCGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.49, C:0.16, G:0.06, T:0.29
Consensus pattern (20 bp):
AATTAACCAATTTAAAATCG
Found at i:1031695 original size:12 final size:12
Alignment explanation
Indices: 1031671--1031704 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1031661 AAGTGTGCTA
*
1031671 TGTGTGTGTGTG
1 TGTGTGTGAGTG
*
1031683 TGTGTTTGAGTG
1 TGTGTGTGAGTG
1031695 TGTGTGTGAG
1 TGTGTGTGAG
1031705 AGAGAGAGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.00, G:0.47, T:0.47
Consensus pattern (12 bp):
TGTGTGTGAGTG
Found at i:1031790 original size:174 final size:174
Alignment explanation
Indices: 1031527--1031843 Score: 539
Period size: 174 Copynumber: 1.8 Consensus size: 174
1031517 TTGAGAGAGA
* *
1031527 GAGAGAGAGGGAGTTTCTATCAGGATTTCATATTATGAGCCTATTCAATCTTGATTTCTCAAATT
1 GAGAGAGAGAGAGTTTCTATCAGGATTTCATATTACGAGCCTATTCAATCTTGATTTCTCAAATT
*
1031592 GCAAGGGTTTTCTATGTTTTGTTGGGGATGTTGTAGAGGTTCAGTAAAAGAGATACGTCTTTTCA
66 GCAAGGGTTTTCTATGTTTTGTTGGGGATGGTGTAGAGGTTCAGTAAAAGAGATACGTCTTTTCA
1031657 ACTTAAGTGTGCTATGTGTGTGTGTGTGTGTTTGAGTGTGTGTGT
131 AC-TAAGTGTGCTATGTGTGTGTGTGTGTGTTTGAGTGTGTGTGT
1031702 GAGAGAGAGAGAGTTTCTCA-CAGGATTTCATATTACGAG-CTATTCAATCTTGATTTCTCAAAT
1 GAGAGAGAGAGAGTTTCT-ATCAGGATTTCATATTACGAGCCTATTCAATCTTGATTTCTCAAAT
* * * *
1031765 TGTAAGGTTTTTTTATGTTTTGTTGGGGATGGTGTAGAGGTTCAGTAAAAGAGATACTTCTTTTC
65 TGCAAGGGTTTTCTATGTTTTGTTGGGGATGGTGTAGAGGTTCAGTAAAAGAGATACGTCTTTTC
1031830 AACTAAGTGTGCTA
130 AACTAAGTGTGCTA
1031844 ATTTGTGATT
Statistics
Matches: 134, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
173 11 0.08
174 87 0.65
175 35 0.26
176 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.26, T:0.39
Consensus pattern (174 bp):
GAGAGAGAGAGAGTTTCTATCAGGATTTCATATTACGAGCCTATTCAATCTTGATTTCTCAAATT
GCAAGGGTTTTCTATGTTTTGTTGGGGATGGTGTAGAGGTTCAGTAAAAGAGATACGTCTTTTCA
ACTAAGTGTGCTATGTGTGTGTGTGTGTGTTTGAGTGTGTGTGT
Found at i:1032648 original size:273 final size:273
Alignment explanation
Indices: 1032161--1032708 Score: 1087
Period size: 273 Copynumber: 2.0 Consensus size: 273
1032151 ATATCCCAAA
*
1032161 ATTATTTGTAGAATAGTAGTCTTCTTTGTGTTCATTTTTTTATAATGTGAAATCCTTTAATGCAG
1 ATTATTTGTAGAATAGTAGTCTTCTTTGTGCTCATTTTTTTATAATGTGAAATCCTTTAATGCAG
1032226 CAGGGGTTGAACCATGGTGAGAACTATAGTTCAACAATTCCTGCAAAATTATTGTATAGCTTCGT
66 CAGGGGTTGAACCATGGTGAGAACTATAGTTCAACAATTCCTGCAAAATTATTGTATAGCTTCGT
1032291 TGGATAAAATAGTTCACATCTCCAATTCCACTTACCAAATTTGTTATTTAAGAAAAAATCATGAA
131 TGGATAAAATAGTTCACATCTCCAATTCCACTTACCAAATTTGTTATTTAAGAAAAAATCATGAA
1032356 GTTAGTCGTGGTATTTCTCATTTTCTTGAGTCCTGAATATAATAGTTTCCTTTCTGATAGGAAAT
196 GTTAGTCGTGGTATTTCTCATTTTCTTGAGTCCTGAATATAATAGTTTCCTTTCTGATAGGAAAT
1032421 TCTGAAAAATTAT
261 TCTGAAAAATTAT
1032434 ATTATTTGTAGAATAGTAGTCTTCTTTGTGCTCATTTTTTTATAATGTGAAATCCTTTAATGCAG
1 ATTATTTGTAGAATAGTAGTCTTCTTTGTGCTCATTTTTTTATAATGTGAAATCCTTTAATGCAG
1032499 CAGGGGTTGAACCATGGTGAGAACTATAGTTCAACAATTCCTGCAAAATTATTGTATAGCTTCGT
66 CAGGGGTTGAACCATGGTGAGAACTATAGTTCAACAATTCCTGCAAAATTATTGTATAGCTTCGT
1032564 TGGATAAAATAGTTCACATCTCCAATTCCACTTACCAAATTTGTTATTTAAGAAAAAATCATGAA
131 TGGATAAAATAGTTCACATCTCCAATTCCACTTACCAAATTTGTTATTTAAGAAAAAATCATGAA
1032629 GTTAGTCGTGGTATTTCTCATTTTCTTGAGTCCTGAATATAATAGTTTCCTTTCTGATAGGAAAT
196 GTTAGTCGTGGTATTTCTCATTTTCTTGAGTCCTGAATATAATAGTTTCCTTTCTGATAGGAAAT
1032694 TCTGAAAAATTAT
261 TCTGAAAAATTAT
1032707 AT
1 AT
1032709 CATTCATTGT
Statistics
Matches: 274, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
273 274 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (273 bp):
ATTATTTGTAGAATAGTAGTCTTCTTTGTGCTCATTTTTTTATAATGTGAAATCCTTTAATGCAG
CAGGGGTTGAACCATGGTGAGAACTATAGTTCAACAATTCCTGCAAAATTATTGTATAGCTTCGT
TGGATAAAATAGTTCACATCTCCAATTCCACTTACCAAATTTGTTATTTAAGAAAAAATCATGAA
GTTAGTCGTGGTATTTCTCATTTTCTTGAGTCCTGAATATAATAGTTTCCTTTCTGATAGGAAAT
TCTGAAAAATTAT
Found at i:1046309 original size:20 final size:21
Alignment explanation
Indices: 1046286--1046325 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1046276 AATATAAAAA
*
1046286 ATAAAAT-TTAAAAATTATTT
1 ATAAAATATTAAAAAATATTT
1046306 ATAAAATATTAAAAAATATT
1 ATAAAATATTAAAAAATATT
1046326 AACACTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
ATAAAATATTAAAAAATATTT
Found at i:1056083 original size:32 final size:31
Alignment explanation
Indices: 1055999--1056083 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 31
1055989 CTAATGTGAC
* * *
1055999 TCTTAGGTATGCTCTGTGGCCCTGAGATCAT
1 TCTTAGGTAGGCCCTGTGGCCCTAAGATCAT
** ** **
1056030 TCTCGGGTAGGCCCTACGGCCCTAAGATGTTT
1 TCTTAGGTAGGCCCTGTGGCCCTAAGAT-CAT
1056062 TCTTAGGTAGGCCCTGTGGCCC
1 TCTTAGGTAGGCCCTGTGGCCC
1056084 CGAAACTTTA
Statistics
Matches: 40, Mismatches: 13, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
31 21 0.52
32 19 0.47
ACGTcount: A:0.14, C:0.27, G:0.28, T:0.31
Consensus pattern (31 bp):
TCTTAGGTAGGCCCTGTGGCCCTAAGATCAT
Found at i:1057787 original size:18 final size:18
Alignment explanation
Indices: 1057764--1057808 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
1057754 TTTATTATAT
1057764 ATTATTAAATAAACATAC
1 ATTATTAAATAAACATAC
* * * *
1057782 ATTATTATATTAATATAT
1 ATTATTAAATAAACATAC
1057800 ATTATTAAA
1 ATTATTAAA
1057809 ATAGAAAATG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTATTAAATAAACATAC
Found at i:1062150 original size:20 final size:21
Alignment explanation
Indices: 1062127--1062168 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
1062117 TCATAAAAAT
* *
1062127 AATTAATTTATTATTTT-TAA
1 AATTAAATAATTATTTTATAA
1062147 AATTAAATAATTATTTTATAA
1 AATTAAATAATTATTTTATAA
1062168 A
1 A
1062169 TTTTTTCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AATTAAATAATTATTTTATAA
Found at i:1063695 original size:60 final size:60
Alignment explanation
Indices: 1063602--1063726 Score: 162
Period size: 60 Copynumber: 2.1 Consensus size: 60
1063592 GTATATACAT
* **
1063602 ATAGTTTGGGATGAAGTTGAAATGTTAAAAAAGTTTGGGGACAAATATAGAATGAAAGTC
1 ATAGTTTGGGATGAAGTTAAAATGTTAAAAAAGTTTAAGGACAAATATAGAATGAAAGTC
* * * * *
1063662 ATAGTTTGGGGGTGAAGTTAAAATGTT-CAAAAGTTTAAGGACTAATTTAGAATGATAGTC
1 ATAGTTT-GGGATGAAGTTAAAATGTTAAAAAAGTTTAAGGACAAATATAGAATGAAAGTC
1063722 ATAGT
1 ATAGT
1063727 ATAGTGATTA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 39 0.70
61 17 0.30
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.31
Consensus pattern (60 bp):
ATAGTTTGGGATGAAGTTAAAATGTTAAAAAAGTTTAAGGACAAATATAGAATGAAAGTC
Found at i:1065331 original size:25 final size:25
Alignment explanation
Indices: 1065282--1065337 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
1065272 TCAAAAAATG
*
1065282 AAACC-TTTAAACCGAACCGAAAACC
1 AAACCGTTTAAACCAAACCG-AAACC
1065307 AAACCGTTTAAAGCCAAACCG-AACC
1 AAACCGTTTAAA-CCAAACCGAAACC
*
1065332 GAACCG
1 AAACCG
1065338 AACCATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 14 0.52
26 6 0.22
27 7 0.26
ACGTcount: A:0.45, C:0.32, G:0.12, T:0.11
Consensus pattern (25 bp):
AAACCGTTTAAACCAAACCGAAACC
Found at i:1066389 original size:20 final size:20
Alignment explanation
Indices: 1066362--1066405 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
1066352 GATAATATAT
1066362 ATATATATATATGGATGGATGG
1 ATATAT-TA-ATGGATGGATGG
*
1066384 ATATATTAATGGGTGGATGG
1 ATATATTAATGGATGGATGG
1066404 AT
1 AT
1066406 GATGCGGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.62
21 2 0.10
22 6 0.29
ACGTcount: A:0.34, C:0.00, G:0.30, T:0.36
Consensus pattern (20 bp):
ATATATTAATGGATGGATGG
Found at i:1090956 original size:17 final size:17
Alignment explanation
Indices: 1090936--1090969 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
1090926 ATTTAAGAAA
1090936 ATTTTATAATTA-ATAAT
1 ATTTTA-AATTATATAAT
1090953 ATTTTAAATTATATAAT
1 ATTTTAAATTATATAAT
1090970 TATATAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTTAAATTATATAAT
Found at i:1092086 original size:26 final size:26
Alignment explanation
Indices: 1092039--1092088 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
1092029 GCATGAAATA
*
1092039 TGCAACGTAAAACTGCTGTTGAATTG
1 TGCAACGTAAAACTGCGGTTGAATTG
*
1092065 TGCAATGTAAAACTG-GGATTGAAT
1 TGCAACGTAAAACTGCGG-TTGAAT
1092089 AAAGCCAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (26 bp):
TGCAACGTAAAACTGCGGTTGAATTG
Found at i:1094320 original size:44 final size:44
Alignment explanation
Indices: 1094256--1094346 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
1094246 GTGTTATTGT
*
1094256 GCTTGAGAGAGAAAGCTCACACCAAATTTAATATGAGAGAA-AAA
1 GCTTGAGAGAGAAAGCTCACACCAAATTTAACATGAGA-AAGAAA
*
1094300 GCTTGAGAGAGAAA-CATCACACCAGATTTAACATGAGAAAGAAA
1 GCTTGAGAGAGAAAGC-TCACACCAAATTTAACATGAGAAAGAAA
1094344 GCT
1 GCT
1094347 AACATCATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 3 0.07
44 40 0.93
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (44 bp):
GCTTGAGAGAGAAAGCTCACACCAAATTTAACATGAGAAAGAAA
Found at i:1103869 original size:19 final size:19
Alignment explanation
Indices: 1103840--1103885 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
1103830 GTTTTTAGTA
1103840 TTAATATTTTAATATTCTTT
1 TTAATATTTTAATATT-TTT
1103860 TTAA-ATTTTAATA-TTTT
1 TTAATATTTTAATATTTTT
1103877 TTAATATTT
1 TTAATATTT
1103886 GATTTCTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.28
18 5 0.20
19 9 0.36
20 4 0.16
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
TTAATATTTTAATATTTTT
Found at i:1105549 original size:60 final size:60
Alignment explanation
Indices: 1105454--1105616 Score: 175
Period size: 60 Copynumber: 2.7 Consensus size: 60
1105444 TTTATATACT
* * * * * * * *
1105454 CAAACTATGATTTTCATTTTAAATTGGTCTTCAAACTTTTGAATATTATAATTTCGTCAC
1 CAAACTATGAATCTCATTCTAAATTAGTCCTCAAACTTTTGAATAATACAATTTCATCAC
* * * * *
1105514 CATA-TGATTACTCTCATTCTAAATTAGTCCTCAAACTTTTGAATAATCCAATTTCATCCC
1 CAAACT-ATGAATCTCATTCTAAATTAGTCCTCAAACTTTTGAATAATACAATTTCATCAC
* *
1105574 CAAACTATGAATCTCATTCTAAATTAGCCCCCAAACTTTTGAA
1 CAAACTATGAATCTCATTCTAAATTAGTCCTCAAACTTTTGAA
1105617 GCTTCTAATG
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
59 1 0.01
60 82 0.98
61 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (60 bp):
CAAACTATGAATCTCATTCTAAATTAGTCCTCAAACTTTTGAATAATACAATTTCATCAC
Found at i:1105631 original size:60 final size:60
Alignment explanation
Indices: 1105525--1105637 Score: 154
Period size: 60 Copynumber: 1.9 Consensus size: 60
1105515 ATATGATTAC
* * * *
1105525 TCTCATTCTAAATTAGTCCTCAAACTTTTGAATAATCCAATTTCATCCCCAAACTATGAA
1 TCTCATTCTAAATTAGCCCCCAAACTTTTGAAGAATCCAATGTCATCCCCAAACTATGAA
** * *
1105585 TCTCATTCTAAATTAGCCCCCAAACTTTTGAAGCTTCTAATGTCATCTCCAAA
1 TCTCATTCTAAATTAGCCCCCAAACTTTTGAAGAATCCAATGTCATCCCCAAA
1105638 TTCATCTAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 45 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.35
Consensus pattern (60 bp):
TCTCATTCTAAATTAGCCCCCAAACTTTTGAAGAATCCAATGTCATCCCCAAACTATGAA
Found at i:1107598 original size:34 final size:36
Alignment explanation
Indices: 1107550--1107651 Score: 163
Period size: 34 Copynumber: 2.9 Consensus size: 36
1107540 TTTCGTCCTA
*
1107550 CTAGAATTCAAACTCCTAAAAATAGGATAGAA-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
*
1107585 -TAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
1107620 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
1107652 GTTATACTAT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
34 29 0.48
35 3 0.05
37 29 0.48
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (36 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
Found at i:1108077 original size:27 final size:27
Alignment explanation
Indices: 1108038--1108103 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 27
1108028 ATTTATATGG
1108038 ATATTTTATTATT-TCAT-TTATTTTTTA
1 ATATTTTATTATTAT-ATATTA-TTTTTA
*
1108065 TTATTTTCA-TATTATATATTATTTTTA
1 ATATTTT-ATTATTATATATTATTTTTA
1108092 ATATTTTATTAT
1 ATATTTTATTAT
1108104 ACTTTATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
26 1 0.03
27 27 0.82
28 5 0.15
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (27 bp):
ATATTTTATTATTATATATTATTTTTA
Found at i:1108095 original size:19 final size:18
Alignment explanation
Indices: 1108063--1108285 Score: 61
Period size: 18 Copynumber: 11.9 Consensus size: 18
1108053 ATTTATTTTT
*
1108063 TATTATTTTCATATTATA
1 TATTATTTTTATATTATA
1108081 TATTATTTTTAATATT-T-
1 TATTATTTTT-ATATTATA
*
1108098 TATTATACTTTATATATATA
1 TATTAT-TTTTATAT-TATA
* ** *
1108118 TATTGTAATTATATTAGTC
1 TATTATTTTTATATTA-TA
* * *
1108137 TAATATTCTTATATTTTAATC
1 TATTATT-TT-TATATT-ATA
*
1108158 TAGTTTATTTTTATA-TACA
1 TA--TTATTTTTATATTATA
* *
1108177 TATTATTAATATATATTCT-
1 TATTATT--TTTATATTATA
1108196 TAATTATTTTTAT-TTGAT-
1 T-ATTATTTTTATATT-ATA
1108214 TATTTATTTGTT-TATGTATA
1 TA-TTATTT-TTATAT-TATA
* ** *
1108234 T-CTAAATTTATATTATCT
1 TATTATTTTTATATTAT-A
*
1108252 TATAATTTTATATATT-TA
1 TATTATTTT-TATATTATA
1108270 TATTATTTTT-TATTAT
1 TATTATTTTTATATTAT
1108286 TTTCGTTTTT
Statistics
Matches: 149, Mismatches: 30, Indels: 53
0.64 0.13 0.23
Matches are distributed among these distances:
16 4 0.03
17 25 0.17
18 44 0.30
19 35 0.23
20 22 0.15
21 12 0.08
22 3 0.02
23 4 0.03
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (18 bp):
TATTATTTTTATATTATA
Found at i:1108265 original size:10 final size:10
Alignment explanation
Indices: 1108240--1108288 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
1108230 TATATCTAAA
1108240 TTTATATTAT
1 TTTATATTAT
*
1108250 CTTATA--AT
1 TTTATATTAT
1108258 TTTATA-TA-
1 TTTATATTAT
1108266 TTTATATTAT
1 TTTATATTAT
*
1108276 TTTTTATTAT
1 TTTATATTAT
1108286 TTT
1 TTT
1108289 CGTTTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
8 13 0.39
9 3 0.09
10 17 0.52
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTATATTAT
Found at i:1111440 original size:15 final size:15
Alignment explanation
Indices: 1111420--1111510 Score: 73
Period size: 15 Copynumber: 6.1 Consensus size: 15
1111410 AGATCCAATC
1111420 AAGAAGAAAAAAGAA
1 AAGAAGAAAAAAGAA
1111435 AAGAAGCAAAAAA-AA
1 AAGAAG-AAAAAAGAA
* *
1111450 AACAAAGAAAAAAGAG
1 AA-GAAGAAAAAAGAA
* *
1111466 AACACGAACAAAAGGAA
1 AAGAAGAA-AAAA-GAA
1111483 AA-AAG-AAAAA-AA
1 AAGAAGAAAAAAGAA
*
1111495 AAGAATAAAAAAGAA
1 AAGAAGAAAAAAGAA
1111510 A
1 A
1111511 GAGGAACAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
12 4 0.07
13 2 0.03
14 9 0.15
15 24 0.39
16 18 0.30
17 4 0.07
ACGTcount: A:0.78, C:0.05, G:0.15, T:0.01
Consensus pattern (15 bp):
AAGAAGAAAAAAGAA
Found at i:1111458 original size:31 final size:33
Alignment explanation
Indices: 1111423--1111499 Score: 90
Period size: 31 Copynumber: 2.4 Consensus size: 33
1111413 TCCAATCAAG
1111423 AAGAAAAAAGAAA-A-GAAGCAAAA-AAAAAACA
1 AAGAAAAAAGAAACACGAA-CAAAAGAAAAAACA
*
1111454 AAGAAAAAAGAGAACACGAACAAAAGGAAAAAAGA
1 AAGAAAAAAGA-AACACGAACAAAA-GAAAAAACA
1111489 AA-AAAAAAGAA
1 AAGAAAAAAGAA
1111500 TAAAAAAGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
31 11 0.28
32 2 0.05
33 7 0.17
34 11 0.28
35 9 0.22
ACGTcount: A:0.78, C:0.06, G:0.16, T:0.00
Consensus pattern (33 bp):
AAGAAAAAAGAAACACGAACAAAAGAAAAAACA
Found at i:1111469 original size:16 final size:16
Alignment explanation
Indices: 1111423--1111520 Score: 55
Period size: 16 Copynumber: 6.1 Consensus size: 16
1111413 TCCAATCAAG
1111423 AAGAAAAAAGA-AA-A
1 AAGAAAAAAGAGAACA
*
1111437 GAAGCAAAAAA-AAAACA
1 -AAG-AAAAAAGAGAACA
1111454 AAGAAAAAAGAGAAC-
1 AAGAAAAAAGAGAACA
* *
1111469 ACGAACAAAAG-GAAAA
1 AAGAA-AAAAGAGAACA
* *
1111485 AAGAAAAAAAAAGAATA
1 AAG-AAAAAAGAGAACA
1111502 AA-AAAGAAAGAGGAACA
1 AAGAAA-AAAGA-GAACA
1111519 AA
1 AA
1111521 AAGCACATGC
Statistics
Matches: 65, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
15 20 0.31
16 30 0.46
17 15 0.23
ACGTcount: A:0.77, C:0.06, G:0.16, T:0.01
Consensus pattern (16 bp):
AAGAAAAAAGAGAACA
Found at i:1111496 original size:10 final size:10
Alignment explanation
Indices: 1111481--1111510 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
1111471 GAACAAAAGG
1111481 AAAAAAGAAA
1 AAAAAAGAAA
*
1111491 AAAAAAGAAT
1 AAAAAAGAAA
1111501 AAAAAAGAAA
1 AAAAAAGAAA
1111511 GAGGAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:1112171 original size:22 final size:22
Alignment explanation
Indices: 1112143--1112197 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
1112133 GCTATCCCAT
1112143 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
1112165 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
1112187 CAAACCTTTGA
1 CAAACCTTTGA
1112198 CCAAACACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:1113171 original size:70 final size:73
Alignment explanation
Indices: 1113087--1113409 Score: 257
Period size: 72 Copynumber: 4.6 Consensus size: 73
1113077 GTTTTTCTTA
* * * * *
1113087 AAACAAGA-TTTGTCTCGCTTGAGACCGTTTTCACTAG-AA-GAGTTT-GTCTCTCTTGAGACAG
1 AAACAA-ATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAACAAATTTCGTCTATCTTGAGACAG
1113148 TTTCCCTTG
65 TTTCCCTTG
* *
1113157 AAACAAATTTTGTCTCTCTTGAGACAG-TTTCTCTTGAAACAAATTTCGTCTATCTTGAGACAGT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAACAAATTTCGTCTATCTTGAGACAGT
1113221 TTCCCTTG
66 TTCCCTTG
* * * * *
1113229 AAATAAATTTTGTCTCTCTTGAGACAG-TTTCCCTTGAAACAAA------ATAT-TTGA-ATATG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAACAAATTTCGTCTATCTTGAGACA-G
* *
1113285 TTTTCTTTG
65 TTTCCCTTG
* ** * * * * *
1113294 AAACAAATTTTGTCTCCCTTGAGACAG-TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAAC-AAATTTCGTCTATCTTGAGACAG
*
1113358 TTTCTCTTG
65 TTTCCCTTG
* * *
1113367 AAAC-AATTTTCGTCTATCTTGAGACAG-TTTCCCTTGAAACAAA
1 AAACAAATTTT-GTCTCTCTTGAGACAGTTTTCACTAGAAACAAA
1113410 ATCTTTGAAT
Statistics
Matches: 207, Mismatches: 31, Indels: 28
0.78 0.12 0.11
Matches are distributed among these distances:
64 2 0.01
65 47 0.23
66 5 0.02
69 8 0.04
70 25 0.12
71 4 0.02
72 75 0.36
73 39 0.19
74 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (73 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAACAAATTTCGTCTATCTTGAGACAGT
TTCCCTTG
Found at i:1113172 original size:36 final size:36
Alignment explanation
Indices: 1113129--1113409 Score: 328
Period size: 36 Copynumber: 8.0 Consensus size: 36
1113119 ACTAGAAGAG
1113129 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAT
1 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAT
*
1113165 TTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAT
1 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAT
* * *
1113201 TTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAAT
1 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAT
1113237 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA-
1 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAT
* * * * *
1113272 -----ATAT-TTGA-ATATGTTTTCTTTGAAACAAAT
1 TTTGTCTCTCTTGAGACA-GTTTCCCTTGAAACAAAT
* ** * *
1113302 TTTGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGT
1 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAAT
*
1113339 TTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AAT
1 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAT
*
1113374 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAA
1 TTT-GTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1113410 ATCTTTGAAT
Statistics
Matches: 206, Mismatches: 27, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
28 2 0.01
29 19 0.09
30 2 0.01
35 6 0.03
36 141 0.68
37 36 0.17
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (36 bp):
TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAT
Found at i:1113308 original size:65 final size:65
Alignment explanation
Indices: 1113226--1113541 Score: 206
Period size: 65 Copynumber: 4.7 Consensus size: 65
1113216 ACAGTTTCCC
* * *
1113226 TTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCT
1 TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTTTTCT
** * ** *
1113291 TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGAC
1 TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAAC-AA------AATCT-TTGA-AT
1113356 A-G-TTTCT
57 ATGTTTTCT
** * * *
1113363 CTTGAAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATTTATTTC
1 -TTGAAACAAATTTT-GTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTTTT
*
1113427 CC
64 CT
* * * * * ** * * *
1113429 CTAAAACAAATTTTGTCTCCCTTGAGACAATTACTCTTGAAACACAAAATCTTCAAATTTATTTC
1 TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTG-AA-ACAAAATCTTTGAATATGTTTT
*
1113494 CC
64 CT
* * * * *
1113496 TTAAAACATAATTTTGTTTCCCTTGAGACCGTTTCTCATGAAACAA
1 TTGAAACA-AATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAA
1113542 CAGATATCTT
Statistics
Matches: 198, Mismatches: 36, Indels: 33
0.74 0.13 0.12
Matches are distributed among these distances:
64 1 0.01
65 67 0.34
66 20 0.10
67 31 0.16
68 26 0.13
72 15 0.08
73 36 0.18
74 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (65 bp):
TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTTTTCT
Found at i:1113368 original size:102 final size:102
Alignment explanation
Indices: 1113184--1113372 Score: 290
Period size: 102 Copynumber: 1.9 Consensus size: 102
1113174 CTTGAGACAG
*
1113184 TTTCTCTTGAAACAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTT
1 TTTCTCTTGAAACAAATTTCGTCTACCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTT
1113249 GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
66 GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
* * ** * *
1113286 TTTCT-TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCTCTTGAAACAAATTTCGTCTACCTTGAGACAGTTTCCCTT-GAAATAAATTTTGTCTCTCT
*
1113350 TGAGACAGTTTCTCTTGAAACAA
65 TGAGACAGTTTCCCTTGAAACAA
1113373 TTTTCGTCTA
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 33 0.42
102 45 0.58
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (102 bp):
TTTCTCTTGAAACAAATTTCGTCTACCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTT
GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
Found at i:1113401 original size:138 final size:137
Alignment explanation
Indices: 1113148--1113472 Score: 463
Period size: 138 Copynumber: 2.4 Consensus size: 137
1113138 CTTGAGACAG
*
1113148 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
*
1113213 GAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTT
66 GAGACAGTTTCCCTTGAAATAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATATTT
*
1113278 GAATATG
131 GAATATA
* * * * * * *
1113285 TTTTCTTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AAATTTCGTCTATCT
* * *
1113350 TGAGACAGTTTCTCTTGAAA-CAATTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATCT
65 TGAGACAGTTTCCCTTGAAATAAATTTT-GTCTATCTTGAGACAGTTTCCCTTGAAACAAAATAT
*
1113414 TTGAATTTA
129 TTGAATATA
* * * *
1113423 TTTCCCCTAAAACAAATTTTGTCTCCCTTGAGACAATTACTCTTGAAACA
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
1113473 CAAAATCTTC
Statistics
Matches: 164, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
137 51 0.31
138 113 0.69
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.40
Consensus pattern (137 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
GAGACAGTTTCCCTTGAAATAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATATTT
GAATATA
Found at i:1114380 original size:105 final size:105
Alignment explanation
Indices: 1114145--1114805 Score: 886
Period size: 105 Copynumber: 6.3 Consensus size: 105
1114135 GCCATCTGCG
* * * * * *
1114145 ATTTCAACTCCACGACGGAGGATATCGTGGCACTCGAGACAACACAAGTTCAACTTCACAACGAA
1 ATTTCAACTTCACAACGAAGGATAT--TGG-ACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* *
1114210 GGGA-CGACTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
63 GGGACCG-CTGCTTGTCAAC-AACAACTTCCCAATTTCAGAGCCA
1114254 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
***
1114319 ACCGCTGCTTGTCAACAACAACTTCTTTATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
* * *
1114359 ATTTCAACTTCACAACAAAGGATATTGGACTTCAGACAATGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
1114424 ACCGCTTCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
* *
1114464 ATTTCAACTTCACAACGAAGGATATTGGACTCCATACAATGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
1114529 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
* *
1114569 ATTTCAATTTCACAACGAAGGATATTGGATTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* **
1114634 ACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAGATTCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
* * *
1114669 ATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * * ** *
1114734 A-CGACTGGTTGTCAACAAATAATTTCCCGGTTCCAGAGCCA
66 ACCG-CTGCTTGTCAAC-AACAACTTCCCAATTTCAGAGCCA
* * *
1114775 ATTTCAACTTCACGACGGAGGATATTAGACT
1 ATTTCAACTTCACAACGAAGGATATTGGACT
1114806 TGGAACAATG
Statistics
Matches: 501, Mismatches: 43, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
99 2 0.00
100 79 0.16
101 3 0.01
102 3 0.01
103 4 0.01
104 3 0.01
105 299 0.60
106 81 0.16
107 5 0.01
109 22 0.04
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (105 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
Found at i:1115388 original size:34 final size:36
Alignment explanation
Indices: 1115340--1115439 Score: 159
Period size: 34 Copynumber: 2.8 Consensus size: 36
1115330 TTTCGTCCTA
* *
1115340 CTAGAATTCAAACTCCTAAAAATAGGATAGAA-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1115375 -TAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1115410 GCTAGGATTCAAACTCCTAAAAATAGGATA
1 -CTAGGATTCAAACTCCTAAAAATAGGATA
1115440 TAGTTATACT
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
34 29 0.48
35 3 0.05
37 28 0.47
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (36 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
Found at i:1115871 original size:18 final size:17
Alignment explanation
Indices: 1115832--1115874 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
1115822 ATTATATGGA
1115832 TATT-TTATTCATTTAT
1 TATTATTATTCATTTAT
*
1115848 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
1115866 TATTATTAT
1 TATTATTAT
1115875 ATGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:1116876 original size:13 final size:13
Alignment explanation
Indices: 1116858--1116889 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1116848 GTTGCGACAA
*
1116858 TTATTTAATTTTT
1 TTATTTAATTATT
1116871 TTATTTAATTATT
1 TTATTTAATTATT
1116884 TTATTT
1 TTATTT
1116890 GTTTGCAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (13 bp):
TTATTTAATTATT
Found at i:1117170 original size:16 final size:15
Alignment explanation
Indices: 1117143--1117185 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
1117133 TATAACTGCA
*
1117143 AAAAAATAAAATAAT
1 AAAAAATTAAATAAT
1117158 AATAAAATTAAATAAT
1 AA-AAAATTAAATAAT
1117174 AAAATAATTAAA
1 AAAA-AATTAAA
1117186 AAAATACTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAAAATTAAATAAT
Found at i:1122813 original size:20 final size:20
Alignment explanation
Indices: 1122775--1122813 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1122765 ATGAAAATAA
*
1122775 TCCATATCATTAATTTATTT
1 TCCATATCATTAATATATTT
* *
1122795 TCCATGTCATTCATATATT
1 TCCATATCATTAATATATT
1122814 AATATTATAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.18, G:0.03, T:0.51
Consensus pattern (20 bp):
TCCATATCATTAATATATTT
Found at i:1132242 original size:33 final size:34
Alignment explanation
Indices: 1132181--1132246 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
1132171 TTTGTTTCGT
1132181 TTTAGTATCTCACCATTAGAAACTTAGTGAAACG
1 TTTAGTATCTCACCATTAGAAACTTAGTGAAACG
1132215 TTTAGTATCTCACCATTA-AAACTTAGTGAAAC
1 TTTAGTATCTCACCATTAGAAACTTAGTGAAAC
1132247 TGTTACAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 14 0.44
34 18 0.56
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (34 bp):
TTTAGTATCTCACCATTAGAAACTTAGTGAAACG
Found at i:1132857 original size:18 final size:19
Alignment explanation
Indices: 1132817--1132861 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
1132807 TTTGGTTCAA
* *
1132817 GGAATATAAGATTATCAGTG
1 GGAATAAAAGATTACCAG-G
1132837 GGAATAAAAGATTACCA-G
1 GGAATAAAAGATTACCAGG
1132855 GGAATAA
1 GGAATAA
1132862 GATTACTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.47, C:0.07, G:0.24, T:0.22
Consensus pattern (19 bp):
GGAATAAAAGATTACCAGG
Found at i:1132931 original size:35 final size:35
Alignment explanation
Indices: 1132885--1132964 Score: 133
Period size: 35 Copynumber: 2.3 Consensus size: 35
1132875 GTTGTATTTT
*
1132885 GTATTTTGTTGGTTTAGCAGGAATGTAAGATTACC
1 GTATTTGGTTGGTTTAGCAGGAATGTAAGATTACC
*
1132920 GTATTTGGTTGGTTTAGCAGGAATGTAAGATTATC
1 GTATTTGGTTGGTTTAGCAGGAATGTAAGATTACC
*
1132955 GTGTTTGGTT
1 GTATTTGGTT
1132965 AAAGGAATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.23, C:0.06, G:0.29, T:0.42
Consensus pattern (35 bp):
GTATTTGGTTGGTTTAGCAGGAATGTAAGATTACC
Found at i:1133631 original size:16 final size:17
Alignment explanation
Indices: 1133602--1133634 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1133592 TTTTTATACG
*
1133602 AAAAATATATTAATTAT
1 AAAAATATAATAATTAT
1133619 AAAAAT-TAATAATTAT
1 AAAAATATAATAATTAT
1133635 TTAGAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAAATATAATAATTAT
Found at i:1134222 original size:24 final size:24
Alignment explanation
Indices: 1134195--1134243 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
1134185 TATTATAAAC
1134195 ATCGATTGTAATTGAAAATTTAGT
1 ATCGATTGTAATTGAAAATTTAGT
1134219 ATCGATTGTAATTGAAAATTTAGT
1 ATCGATTGTAATTGAAAATTTAGT
1134243 A
1 A
1134244 AGAGTGTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (24 bp):
ATCGATTGTAATTGAAAATTTAGT
Found at i:1135114 original size:22 final size:22
Alignment explanation
Indices: 1135089--1135133 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
1135079 AAGACTATTC
*
1135089 ATTA-ATTATTTTAATAAAAAAT
1 ATTATATTAGTTTAA-AAAAAAT
*
1135111 ATTATCTTAGTTTAAAAAAAAT
1 ATTATATTAGTTTAAAAAAAAT
1135133 A
1 A
1135134 AAAGTGCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
ATTATATTAGTTTAAAAAAAAT
Found at i:1140381 original size:2 final size:2
Alignment explanation
Indices: 1140376--1140403 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1140366 TTCACCCTAA
1140376 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1140404 TAATACGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1149927 original size:19 final size:19
Alignment explanation
Indices: 1149899--1149944 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
1149889 TCAAATTGGT
1149899 AATA-ATTTTATTTAATTC
1 AATATATTTTATTTAATTC
1149917 AATATATTTTATTTAATTC
1 AATATATTTTATTTAATTC
1149936 AATATATTT
1 AATATATTT
1149945 AATCCTCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATATTTTATTTAATTC
Found at i:1156313 original size:18 final size:17
Alignment explanation
Indices: 1156290--1156357 Score: 79
Period size: 16 Copynumber: 4.1 Consensus size: 17
1156280 TTTTATACAA
*
1156290 TATTAAAATATATATTTT
1 TATTAAAA-ATATATATT
1156308 TATTAAAAATATATATT
1 TATTAAAAATATATATT
* *
1156325 T-TTAAATATATAAATT
1 TATTAAAAATATATATT
1156341 TATTAAAAA-ATAT-TT
1 TATTAAAAATATATATT
1156356 TA
1 TA
1156358 AAGACAAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
15 4 0.09
16 17 0.39
17 15 0.34
18 8 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTAAAAATATATATT
Found at i:1156355 original size:14 final size:15
Alignment explanation
Indices: 1156290--1156355 Score: 53
Period size: 17 Copynumber: 4.1 Consensus size: 15
1156280 TTTTATACAA
1156290 TATTAAAATATATATTTT
1 TATTAAAA-ATATA--TT
1156308 TATTAAAAATATATAT
1 TATTAAAAATATAT-T
* *
1156324 TTTTAAATATATAAATT
1 TATTAAA-A-ATATATT
1156341 TATTAAAAA-ATATT
1 TATTAAAAATATATT
1156355 T
1 T
1156356 TAAAGACAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
14 5 0.12
15 2 0.05
16 8 0.20
17 13 0.32
18 13 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAAAAATATATT
Found at i:1156996 original size:16 final size:17
Alignment explanation
Indices: 1156975--1157012 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
1156965 CACTCGAGAC
*
1156975 TATAATATTAT-TTTTT
1 TATAATATTATATTTTA
1156991 TATAATATTATATTTTA
1 TATAATATTATATTTTA
1157008 TATAA
1 TATAA
1157013 ATAAATATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TATAATATTATATTTTA
Found at i:1158969 original size:14 final size:14
Alignment explanation
Indices: 1158950--1158994 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
1158940 TTCCAAGGTA
1158950 TTATATATATATAT
1 TTATATATATATAT
*
1158964 TTATATATATATGT
1 TTATATATATATAT
* *
1158978 TTTTAAATCATATAT
1 TTATATAT-ATATAT
1158993 TT
1 TT
1158995 GGTTTTTGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
14 19 0.73
15 7 0.27
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (14 bp):
TTATATATATATAT
Found at i:1159311 original size:22 final size:22
Alignment explanation
Indices: 1159286--1159327 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
1159276 ATTGAATTTT
1159286 ATAAATTTGAGTTATTAATAAA
1 ATAAATTTGAGTTATTAATAAA
1159308 ATAAATTTGAGTTATTAATA
1 ATAAATTTGAGTTATTAATA
1159328 GATGCCATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (22 bp):
ATAAATTTGAGTTATTAATAAA
Found at i:1168006 original size:20 final size:20
Alignment explanation
Indices: 1167981--1168020 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
1167971 AATTCATAAT
*
1167981 TCTGAGTGTCTCCCACGGAA
1 TCTGAGTGCCTCCCACGGAA
1168001 TCTGAGTGCCTCCCACGGAA
1 TCTGAGTGCCTCCCACGGAA
1168021 GCTGCTCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.33, G:0.25, T:0.23
Consensus pattern (20 bp):
TCTGAGTGCCTCCCACGGAA
Found at i:1169263 original size:22 final size:22
Alignment explanation
Indices: 1169235--1169298 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
1169225 ACGTTGAAAA
1169235 GAAGATCGCGTTGCGATTCTTG
1 GAAGATCGCGTTGCGATTCTTG
1169257 GAAGATCGCGTTGCGATT-TT-
1 GAAGATCGCGTTGCGATTCTTG
* *
1169277 -ATGAATCGCATTGCGATTCTTG
1 GAAG-ATCGCGTTGCGATTCTTG
1169299 CATAAATGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
19 2 0.05
20 13 0.35
21 4 0.11
22 18 0.49
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.34
Consensus pattern (22 bp):
GAAGATCGCGTTGCGATTCTTG
Found at i:1169802 original size:19 final size:18
Alignment explanation
Indices: 1169775--1169815 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
1169765 TTATAATTTA
1169775 TAATTTATAAAATAAAAT
1 TAATTTATAAAATAAAAT
* *
1169793 TAATTATATATAATTAAAT
1 TAATT-TATAAAATAAAAT
1169812 TAAT
1 TAAT
1169816 CTTTTTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TAATTTATAAAATAAAAT
Found at i:1171162 original size:7 final size:7
Alignment explanation
Indices: 1171150--1171193 Score: 88
Period size: 7 Copynumber: 6.3 Consensus size: 7
1171140 AGAGCAGAGA
1171150 CACTGGG
1 CACTGGG
1171157 CACTGGG
1 CACTGGG
1171164 CACTGGG
1 CACTGGG
1171171 CACTGGG
1 CACTGGG
1171178 CACTGGG
1 CACTGGG
1171185 CACTGGG
1 CACTGGG
1171192 CA
1 CA
1171194 GCAACATTGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.16, C:0.30, G:0.41, T:0.14
Consensus pattern (7 bp):
CACTGGG
Found at i:1171349 original size:20 final size:18
Alignment explanation
Indices: 1171324--1171363 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
1171314 GAAGGCAATA
1171324 TTTTGTTGTAACTTTTTTAT
1 TTTTGTTGTAA--TTTTTAT
*
1171344 TTTTGTTTTAATTTTTAT
1 TTTTGTTGTAATTTTTAT
1171362 TT
1 TT
1171364 AAATTATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.15, C:0.03, G:0.07, T:0.75
Consensus pattern (18 bp):
TTTTGTTGTAATTTTTAT
Found at i:1171876 original size:26 final size:27
Alignment explanation
Indices: 1171831--1171887 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 27
1171821 AAACAATCGA
1171831 AAATGTTAGAAAAAAGAT-AATAA-AT
1 AAATGTTAGAAAAAAGATAAATAATAT
*
1171856 AAATGTTTA-AAAAATATATAAATAATAT
1 AAATG-TTAGAAAAA-AGATAAATAATAT
1171884 AAAT
1 AAAT
1171888 ATAGATAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 10 0.37
26 6 0.22
27 5 0.19
28 6 0.22
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (27 bp):
AAATGTTAGAAAAAAGATAAATAATAT
Found at i:1171889 original size:15 final size:14
Alignment explanation
Indices: 1171871--1171915 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
1171861 TTTAAAAAAT
1171871 ATATAAATAATATAA
1 ATATAAATAA-ATAA
* *
1171886 ATATAGATAAAAAA
1 ATATAAATAAATAA
1171900 ATATTAAATAAATAA
1 ATA-TAAATAAATAA
1171915 A
1 A
1171916 AAAACAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (14 bp):
ATATAAATAAATAA
Found at i:1171914 original size:19 final size:20
Alignment explanation
Indices: 1171879--1171919 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
1171869 ATATATAAAT
1171879 AATATAAATATAGATAAAAA
1 AATATAAATATAGATAAAAA
1171899 AATATTAAATA-A-ATAAAAA
1 AATA-TAAATATAGATAAAAA
1171918 AA
1 AA
1171920 CAAAATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.45
20 5 0.25
21 6 0.30
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (20 bp):
AATATAAATATAGATAAAAA
Found at i:1173121 original size:5 final size:5
Alignment explanation
Indices: 1173111--1173187 Score: 52
Period size: 5 Copynumber: 14.8 Consensus size: 5
1173101 CATGGAAAGA
* * *
1173111 AAAAT AAAAT AAAGT -TAAT AAAAT AAAAT AAAAT -AAAT AAGGAA- ATAAGT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA--AAT A-AAAT
1173161 AATAAT AATAAT AATAAT AAAAT AAAA
1 AA-AAT AA-AAT AA-AAT AAAAT AAAA
1173188 ATATTTTCAA
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
4 6 0.10
5 32 0.54
6 18 0.31
7 3 0.05
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:1173149 original size:19 final size:18
Alignment explanation
Indices: 1173111--1173187 Score: 64
Period size: 19 Copynumber: 3.8 Consensus size: 18
1173101 CATGGAAAGA
*
1173111 AAAATAAAATAAAGTTAAT
1 AAAATAAAATAAA-ATAAT
1173130 AAAATAAAATAAAATAAAT
1 AAAATAAAATAAAAT-AAT
1173149 AAGGAAATAAGTAATAATAATAAT
1 -A--AAATAA--AATAA-AATAAT
1173173 AATAATAAAATAAAA
1 AA-AATAAAATAAAA
1173188 ATATTTTCAA
Statistics
Matches: 49, Mismatches: 1, Indels: 16
0.74 0.02 0.24
Matches are distributed among these distances:
18 1 0.02
19 18 0.37
20 6 0.12
21 1 0.02
22 11 0.22
23 1 0.02
24 8 0.16
25 3 0.06
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.23
Consensus pattern (18 bp):
AAAATAAAATAAAATAAT
Found at i:1173168 original size:3 final size:3
Alignment explanation
Indices: 1173126--1173190 Score: 50
Period size: 3 Copynumber: 22.7 Consensus size: 3
1173116 AAAATAAAGT
**
1173126 TAA TAA -AA TAA -AA TAA -AA TAAA TAA GGA -AA TAA GTAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA -TAA TAA TAA
*
1173169 TAA TAA TAA TAA -AA TAA AAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
1173191 TTTTCAAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
2 9 0.18
3 35 0.70
4 6 0.12
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.25
Consensus pattern (3 bp):
TAA
Found at i:1173183 original size:27 final size:22
Alignment explanation
Indices: 1173111--1173187 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
1173101 CATGGAAAGA
1173111 AAAATAAAATAAAGTTAATAAAAT
1 AAAATAAAATAAA--TAATAAAAT
**
1173135 AAAATAAAATAAATAAGGAAAT
1 AAAATAAAATAAATAATAAAAT
*
1173157 -AAGTAATAAT-AATAATAATAAT
1 AAAATAA-AATAAATAATAA-AAT
1173179 AAAATAAAA
1 AAAATAAAA
1173188 ATATTTTCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
21 11 0.25
22 15 0.34
23 5 0.11
24 13 0.30
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.23
Consensus pattern (22 bp):
AAAATAAAATAAATAATAAAAT
Found at i:1173269 original size:36 final size:36
Alignment explanation
Indices: 1173185--1173581 Score: 402
Period size: 36 Copynumber: 10.9 Consensus size: 36
1173175 TAATAAAATA
* * ** * *
1173185 AAAATATTTTCAAAACCCTATATAATATATATTCTTA
1 AAAATGTTTTAAAAACTATATATTATATATATT-TTC
* *
1173222 AAAATATTTTAAAAACTATATATTATATTTATTTTC
1 AAAATGTTTTAAAAACTATATATTATATATATTTTC
*
1173258 AAAATGTTTTAAAAACTATATAATATATATATTTTC
1 AAAATGTTTTAAAAACTATATATTATATATATTTTC
*
1173294 AAAAATGTTTTTTAAATATATATATATATATATATTATTTATTTTC
1 -AAAATG--TTTTAAA-A-A-CTATATAT-TATA-TA--TATTTTC
*
1173340 AAAATGTTTTAAAAACTATATA--ATATATATTTTAA
1 AAAATGTTTTAAAAACTATATATTATATATATTTT-C
*
1173375 AAAATGTTTTAAAAACTATATATTATATTTATTTTC
1 AAAATGTTTTAAAAACTATATATTATATATATTTTC
* *
1173411 GAAATTTTTTAAAAACTATATAATATATATATATTTTC
1 AAAATGTTTTAAAAACTATAT-AT-TATATATATTTTC
1173449 AAAAATGTTTT-AAAA--AT-TA-TAT-T-TATTTTC
1 -AAAATGTTTTAAAAACTATATATTATATATATTTTC
* *
1173479 AAAATATTTTAAAAACTATATAATATATATATTTT-
1 AAAATGTTTTAAAAACTATATATTATATATATTTTC
* *
1173514 AAAATGTTTTAAAAACTATATATTATATTTATTTTA
1 AAAATGTTTTAAAAACTATATATTATATATATTTTC
*
1173550 AAAATGTTTT-TAAACTATATATATATATATAT
1 AAAATGTTTTAAAAACTATATAT-TATATATAT
1173582 ATATATATAT
Statistics
Matches: 309, Mismatches: 26, Indels: 51
0.80 0.07 0.13
Matches are distributed among these distances:
29 9 0.03
30 11 0.04
31 1 0.00
32 5 0.02
33 2 0.01
34 10 0.03
35 67 0.22
36 82 0.27
37 49 0.16
38 16 0.05
39 15 0.05
40 7 0.02
41 2 0.01
42 7 0.02
43 11 0.04
44 2 0.01
45 6 0.02
46 7 0.02
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (36 bp):
AAAATGTTTTAAAAACTATATATTATATATATTTTC
Found at i:1173337 original size:46 final size:44
Alignment explanation
Indices: 1173274--1173444 Score: 137
Period size: 45 Copynumber: 4.2 Consensus size: 44
1173264 TTTTAAAAAC
**
1173274 TATATA-ATATATATATTTTCAAAAATGTTTTTTAAA-TATATATA
1 TATATATATATATATATTTTC-AAAATGTTTTAAAAACTATATA-A
*
1173318 TATATATATATTATTTATTTTCAAAATGTTTTAAAAACTATATAA
1 TATATATATA-TATATATTTTCAAAATGTTTTAAAAACTATATAA
1173363 TATATAT-T-T-TA-A-----AAAATGTTTTAAAAAC--TATA-
1 TATATATATATATATATTTTCAAAATGTTTTAAAAACTATATAA
* *
1173395 --TAT-TATAT-T-TATTTTCGAAATTTTTTAAAAACTATATAA
1 TATATATATATATATATTTTCAAAATGTTTTAAAAACTATATAA
1173434 TATATATATAT
1 TATATATATAT
1173445 TTTCAAAAAT
Statistics
Matches: 104, Mismatches: 6, Indels: 36
0.71 0.04 0.25
Matches are distributed among these distances:
29 1 0.01
30 4 0.04
31 3 0.03
33 4 0.04
35 16 0.15
36 14 0.13
38 4 0.04
40 1 0.01
41 4 0.04
42 6 0.06
44 7 0.07
45 24 0.23
46 16 0.15
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (44 bp):
TATATATATATATATATTTTCAAAATGTTTTAAAAACTATATAA
Found at i:1173490 original size:139 final size:139
Alignment explanation
Indices: 1173329--1173583 Score: 426
Period size: 139 Copynumber: 1.8 Consensus size: 139
1173319 ATATATATAT
*
1173329 TATTTATTTTCAAAATGTTTTAAAAACTATATAATATATAT-TTTAAAAAATGTTTTAAAAACTA
1 TATTTATTTTCAAAATATTTTAAAAACTATATAATATATATATTT-AAAAATGTTTTAAAAACTA
**
1173393 TATATTATATTTATTTTCGAAAT-TTTTTAAAAACTATATA-ATATATATATATTTTCAAAAATG
65 TATATTATATTTATTTTAAAAATGTTTTT--AAACTATATATATATATATATATTTTCAAAAATG
1173456 TTTTAAAAATTA
128 TTTTAAAAATTA
*
1173468 TATTTATTTTCAAAATATTTTAAAAACTATATAATATATATATTTTAAAATGTTTTAAAAACTAT
1 TATTTATTTTCAAAATATTTTAAAAACTATATAATATATATATTTAAAAATGTTTTAAAAACTAT
1173533 ATATTATATTTATTTTAAAAATGTTTTTAAACTATATATATATATATATAT
66 ATATTATATTTATTTTAAAAATGTTTTTAAACTATATATATATATATATAT
1173584 ATATATATAT
Statistics
Matches: 109, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
138 10 0.09
139 91 0.83
140 8 0.07
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (139 bp):
TATTTATTTTCAAAATATTTTAAAAACTATATAATATATATATTTAAAAATGTTTTAAAAACTAT
ATATTATATTTATTTTAAAAATGTTTTTAAACTATATATATATATATATATTTTCAAAAATGTTT
TAAAAATTA
Found at i:1173492 original size:29 final size:30
Alignment explanation
Indices: 1173436--1173536 Score: 96
Period size: 35 Copynumber: 3.2 Consensus size: 30
1173426 CTATATAATA
* *
1173436 TATATATATTTTCAAAAATGTTTTAAAAAT
1 TATATATATTTTCAAAAATATTTTAAAAAC
*
1173466 TATATTTATTTTC-AAAATATTTTAAAAAC
1 TATATATATTTTCAAAAATATTTTAAAAAC
** *
1173495 TATATAATATATATATTTTAAAATGTTTTAAAAAC
1 --TAT-ATATAT-T-TTCAAAAATATTTTAAAAAC
1173530 TATATAT
1 TATATAT
1173537 TATATTTATT
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
29 14 0.24
30 12 0.20
31 3 0.05
32 9 0.15
33 4 0.07
34 2 0.03
35 15 0.25
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.48
Consensus pattern (30 bp):
TATATATATTTTCAAAAATATTTTAAAAAC
Found at i:1173493 original size:68 final size:66
Alignment explanation
Indices: 1173396--1173583 Score: 220
Period size: 68 Copynumber: 2.7 Consensus size: 66
1173386 AAAACTATAT
* *
1173396 ATTATATTTATTTTCGAAATTTTTTAAAAACTATATAATATATATATATTTTCAAAAATGTTTTA
1 ATTATATTTATTTTCAAAATATTTTAAAAACTATATAATATATATATATTTT--AAAATGTTTTA
1173461 AAA
64 AAA
1173464 ATTATATTTATTTTCAAAATATTTTAAAAACTATAT-A-ATATATATATTTTAAAATGTTTTAAA
1 ATTATATTTATTTTCAAAATATTTTAAAAACTATATAATATATATATATTTTAAAATGTTTTAAA
1173527 A
66 A
* **
1173528 ACTATATATTATATTTATTTTAAAA-ATGTTTTTAAACTATATATATATATATATAT
1 A-T-TATATT-TA--T-TTTCAAAATAT-TTTAAAAACTATATA-ATATATATATAT
1173584 ATATATATAT
Statistics
Matches: 105, Mismatches: 5, Indels: 15
0.84 0.04 0.12
Matches are distributed among these distances:
64 15 0.14
65 1 0.01
66 19 0.18
67 3 0.03
68 34 0.32
69 3 0.03
70 19 0.18
72 1 0.01
73 10 0.10
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (66 bp):
ATTATATTTATTTTCAAAATATTTTAAAAACTATATAATATATATATATTTTAAAATGTTTTAAA
A
Found at i:1173572 original size:2 final size:2
Alignment explanation
Indices: 1173565--1173606 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
1173555 GTTTTTAAAC
* *
1173565 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1173607 AAAAATGGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:1174536 original size:164 final size:165
Alignment explanation
Indices: 1174174--1175176 Score: 1201
Period size: 165 Copynumber: 6.1 Consensus size: 165
1174164 TGCCTTGAGC
* * * * * * *
1174174 TATGCTGTAAATGATG-TGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTTTTTTGGTCACAGA
1 TATGCTGTAAATGATGTTCCCTCGAAGCTGAGTGTAATCGAACTCG-AGGGTCTTTGG---CAGA
* * * * * * * *
1174238 TAACCCTTCTAGGCTTGAGTTATGCTGTAAATGATATGTCGTT-GTGCTGAGCGTAGTCGAACTC
62 TAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTC
* * * ** * *
1174302 AAATGACTTTTATTGGCAGACAGCCCTTCTAGACTTAAGT
126 GAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGT
* * * * * * * * * *
1174342 TGTGCTGCAAATGAT-ATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGCAGATAGC
1 TATGCTGTAAATGATGTTCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAAC
* * * *
1174406 CCTTCTCGACTTAAGCTATGTTGTAAATGATGTGTCATT-GAGTTGAGCGTAGTCGAACTCGAAG
66 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* ** * * *
1174470 GTGTTTGG-TAACAGATAACCCTTATAGCCTTGAGT
130 GTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGT
* * * *
1174505 TATGTTGTAAATGATATTCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGGTAAC
1 TATGCTGTAAATGATGTTCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAAC
*
1174570 CCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
66 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
* *
1174635 TCTTTGGTTGGCAGATAACCCTTATCGACTTAAGT
131 TCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGT
* *
1174670 TATGCTGCAAATGATGTACCCTCGAAGCTGAGTGTAATCGAACTCG-GGGCTCTTTGGCAGATAA
1 TATGCTGTAAATGATGTTCCCTCGAAGCTGAGTGTAATCGAACTCGAGGG-TCTTTGGCAGATAA
* * *
1174734 CCCTTCTCGACTTAAGCTATGTTGCAAATTATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
65 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
* *
1174799 GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAACT
130 GTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGT
** * * *
1174835 TATGCTACAAATGATGTGCCCTCGAAGCTGAGTGTAATTGAACTCGGGGGTCTTTGGCAGATAAC
1 TATGCTGTAAATGATGTTCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAAC
* * * * *
1174900 CCTTCTCGACTTAAGTTATACTGCAAATGATGTGCCTTGGAGTTGACCGTAGTCGAACTCAAAGG
66 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
* * *
1174965 TCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGT
131 TCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGT
* * * * *
1174999 TATGCTATAAATGATGTGCCCTCGAAGTTGAGTGTAATCGAACTCGAGGGTATTTGGCAGATAGC
1 TATGCTGTAAATGATGTTCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAAC
* *
1175064 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTAGTCAAACTCGAAGG
66 CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
*
1175129 TCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGT
131 TCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGT
1175164 TATGCTGTAAATG
1 TATGCTGTAAATG
1175177 TTGTCTTTAA
Statistics
Matches: 731, Mismatches: 97, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
163 35 0.05
164 314 0.43
165 329 0.45
166 3 0.00
167 8 0.01
168 42 0.06
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (165 bp):
TATGCTGTAAATGATGTTCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAAC
CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
TCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGT
Found at i:1175042 original size:494 final size:493
Alignment explanation
Indices: 1174234--1175176 Score: 1368
Period size: 494 Copynumber: 1.9 Consensus size: 493
1174224 TTTTTGGTCA
* * * * * *
1174234 CAGATAACCCTTCTAGGCTTGAGTTATGCTGTAAATGATATGTCGTTGTGCTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATATGTCCTTGAGCTGAGCGTAGTCGAA
* * * * * * *
1174299 CTCAAATGACTTTTATTGGCAGACAGCCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTT
66 CTCAAAGGACTTTGATTGGCAGACAACCCTTCTAGACTTAACTTATGCTACAAATGATATGCCTC
* * * **
1174364 GGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGTTG
131 GAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATACTG
* * * *
1174429 TAAATGATGTGTCATTGAGTTGAGCGTAGTCGAACTCGAAGGTGTTTGGTAACAGATAACCCTTA
196 CAAATGATGTGTCATTGAGTTGACCGTAGTCGAACTCAAAGGTCTTTGGTAACAGATAACCCTTA
* * * * *
1174494 TAGCCTTGAGTTATGTTGTAAATGATATTCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTT
261 TAGCCTTGAGTTATGCTATAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTATT
* *
1174559 TGGCAGGTAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTC
326 TGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTC
*
1174624 GAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGTTATGCTGCAAATGATGTAC
391 AAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGTTATGCTGCAAATGATGTAC
1174689 CCTCGAAGCTGAGTGTAATCGAACTCGGGGCTCTTTGG
456 CCTCGAAGCTGAGTGTAATCGAACTCGGGGCTCTTTGG
* * *
1174727 CAGATAACCCTTCTCGACTTAAGCTATGTTGCAAATTATATG-CCTTGGAGCTGAGCGTAGTCGA
1 CAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATATGTCCTT-GAGCTGAGCGTAGTCGA
* * * * * *
1174791 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAACTTATGCTACAAATGATGTGCCC
65 ACTCAAAGGACTTTGATTGGCAGACAACCCTTCTAGACTTAACTTATGCTACAAATGATATG-CC
* * ** *
1174856 TCGAAGCTGAGTGTAATTGAACTCGGGGGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTATAC
129 TCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATAC
* *
1174921 TGCAAATGATGTG-CCTTGGAGTTGACCGTAGTCGAACTCAAAGGTCTTTGGTGACAGATAACCC
194 TGCAAATGATGTGTCATT-GAGTTGACCGTAGTCGAACTCAAAGGTCTTTGGTAACAGATAACCC
* * *
1174985 TTCTAGCCTTGAGTTATGCTATAAATGATGTGCCCTCGAAGTTGAGTGTAATCGAACTCGAGGGT
258 TTATAGCCTTGAGTTATGCTATAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGT
* *
1175050 ATTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGTGTA
323 ATTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTA
* *
1175115 GTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATG
388 GTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGTTATGCTGCAAATG
1175177 TTGTCTTTAA
Statistics
Matches: 394, Mismatches: 53, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
492 3 0.01
493 104 0.26
494 287 0.73
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (493 bp):
CAGATAACCCTTCTAGACTTAAGCTATGCTGCAAATGATATGTCCTTGAGCTGAGCGTAGTCGAA
CTCAAAGGACTTTGATTGGCAGACAACCCTTCTAGACTTAACTTATGCTACAAATGATATGCCTC
GAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATACTG
CAAATGATGTGTCATTGAGTTGACCGTAGTCGAACTCAAAGGTCTTTGGTAACAGATAACCCTTA
TAGCCTTGAGTTATGCTATAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTATT
TGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTC
AAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTATCGACTTAAGTTATGCTGCAAATGATGTAC
CCTCGAAGCTGAGTGTAATCGAACTCGGGGCTCTTTGG
Found at i:1178054 original size:21 final size:22
Alignment explanation
Indices: 1178025--1178077 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
1178015 CCTTTAACTA
*
1178025 CCTTCATTTGATCCTCTAAT-TT
1 CCTTGATTTGATCCTCT-ATCTT
**
1178047 -CTTGATTTTCTCCTCTATCTT
1 CCTTGATTTGATCCTCTATCTT
1178068 CCTTGATTTG
1 CCTTGATTTG
1178078 TCATCTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.08
21 15 0.60
22 8 0.32
ACGTcount: A:0.13, C:0.26, G:0.08, T:0.53
Consensus pattern (22 bp):
CCTTGATTTGATCCTCTATCTT
Done.