Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9057482
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 17 of 37
Found at i:4176195 original size:14 final size:15
Alignment explanation
Indices: 4176170--4176199 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
4176160 TGACTCAAGA
4176170 TTATATTTTGTAAAT
1 TTATATTTTGTAAAT
4176185 TTATA-TTTGTAAAT
1 TTATATTTTGTAAAT
4176199 T
1 T
4176200 ATAACCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TTATATTTTGTAAAT
Found at i:4182865 original size:21 final size:22
Alignment explanation
Indices: 4182818--4182872 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
4182808 AAAACGAGGC
**
4182818 ATTAATGTTTAAAAAATTTGTCA
1 ATTAATGTTTAAAAAATTAAT-A
*
4182841 ATTACTGTTTAAAAAATTAAT-
1 ATTAATGTTTAAAAAATTAATA
*
4182862 ATTATTGTTTA
1 ATTAATGTTTA
4182873 TATAGTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 10 0.36
23 18 0.64
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (22 bp):
ATTAATGTTTAAAAAATTAATA
Found at i:4183264 original size:65 final size:63
Alignment explanation
Indices: 4183142--4183351 Score: 205
Period size: 65 Copynumber: 3.3 Consensus size: 63
4183132 TTTTTCAGAG
* ** *
4183142 TGATGCACCGATGCACCAATCCATGCATCGATGCACCATGA--ATTAAATTG-AATATCGAATGC
1 TGATGCATCGATGCA-CAA-CCATGCATCGATGCA-C-TGAGGA-TATTTTGAAACATCGAATGC
4183204 ATT
61 ATT
*
4183207 TCATGCATCGATGCACATACCATGCA-CGGATGCACTGAGGAT-TTTATGAAAACATCGAATGCA
1 TGATGCATCGATGCACA-ACCATGCATC-GATGCACTGAGGATATTT-TG-AAACATCGAATGCA
4183270 TT
62 TT
* ** * *
4183272 TGATGCATCGATGCACCAGCCATGCATCGATGCACTTTGGCTATTTTGAAACATCGAATGCACT
1 TGATGCATCGATGCA-CAACCATGCATCGATGCACTGAGGATATTTTGAAACATCGAATGCATT
4183336 TGATGCATCGATGCAC
1 TGATGCATCGATGCAC
4183352 TCTTAGTGCA
Statistics
Matches: 124, Mismatches: 11, Indels: 22
0.79 0.07 0.14
Matches are distributed among these distances:
62 4 0.03
63 6 0.05
64 46 0.37
65 62 0.50
66 6 0.05
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (63 bp):
TGATGCATCGATGCACAACCATGCATCGATGCACTGAGGATATTTTGAAACATCGAATGCATT
Found at i:4183351 original size:17 final size:19
Alignment explanation
Indices: 4183323--4183371 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
4183313 TATTTTGAAA
4183323 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
4183341 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
4183360 CACCGATGCACT
1 CATCGATGCACT
4183372 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:4183367 original size:64 final size:63
Alignment explanation
Indices: 4183195--4183371 Score: 182
Period size: 65 Copynumber: 2.7 Consensus size: 63
4183185 TAAATTGAAT
* *
4183195 ATCGAATGCATTTCATGCATCGATGCACATACCA-TGCACGGATGCACTGAGGATTTTATGAAAA
1 ATCGAATGCATTTGATGCATCGATGCAC-T--CAGTGCACCGATGCACTGAGGATTTTATGAAAA
4183259 C
63 C
* ** *
4183260 ATCGAATGCATTTGATGCATCGATGCAC-CAGCCATGCATCGATGCACTTTGGCTATTT-TG-AA
1 ATCGAATGCATTTGATGCATCGATGCACTCAG---TGCACCGATGCACTGAGGAT-TTTATGAAA
4183322 AC
62 AC
*
4183324 ATCGAATGCACTTGATGCATCGATGCACTCTTAGTGCACCGATGCACT
1 ATCGAATGCATTTGATGCATCGATGCACTC--AGTGCACCGATGCACT
4183372 AAGGGTCCAA
Statistics
Matches: 96, Mismatches: 8, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
61 2 0.02
64 44 0.46
65 45 0.47
66 3 0.03
67 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (63 bp):
ATCGAATGCATTTGATGCATCGATGCACTCAGTGCACCGATGCACTGAGGATTTTATGAAAAC
Found at i:4191927 original size:19 final size:19
Alignment explanation
Indices: 4191900--4191957 Score: 98
Period size: 19 Copynumber: 3.1 Consensus size: 19
4191890 ACATCAAATG
* *
4191900 CATATCATGCATCGATGCA
1 CATACCATGCACCGATGCA
4191919 CATACCATGCACCGATGCA
1 CATACCATGCACCGATGCA
4191938 CATACCATGCACCGATGCA
1 CATACCATGCACCGATGCA
4191957 C
1 C
4191958 TGAGGATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.31, C:0.34, G:0.16, T:0.19
Consensus pattern (19 bp):
CATACCATGCACCGATGCA
Found at i:4192000 original size:65 final size:63
Alignment explanation
Indices: 4191925--4192067 Score: 171
Period size: 65 Copynumber: 2.2 Consensus size: 63
4191915 TGCACATACC
* * *
4191925 ATGCACCGATGCACATACCATGCACCGATGCACTGAGGAT-TTTATGAAAACATCGAATGCATTT
1 ATGCATCGATGCACA-ACCATGCACCGATGCACTCAGGATATTT-TG-AAACATCGAATGCACTT
4191989 G
63 G
* * * * *
4191990 ATGCATCGATGCACCAGCTATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACTTG
1 ATGCATCGATGCA-CAACCATGCACCGATGCACTCAGGATATTTTGAAACATCGAATGCACTTG
4192054 ATGCATCGATGCAC
1 ATGCATCGATGCAC
4192068 TCTTAGTGCA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
63 1 0.01
64 30 0.44
65 32 0.47
66 5 0.07
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (63 bp):
ATGCATCGATGCACAACCATGCACCGATGCACTCAGGATATTTTGAAACATCGAATGCACTTG
Found at i:4192067 original size:17 final size:19
Alignment explanation
Indices: 4192039--4192087 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
4192029 TATTTTGAAA
4192039 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
4192057 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
4192076 CACCGATGCACT
1 CATCGATGCACT
4192088 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:4192083 original size:64 final size:64
Alignment explanation
Indices: 4191925--4192087 Score: 179
Period size: 64 Copynumber: 2.5 Consensus size: 64
4191915 TGCACATACC
* * * * *
4191925 ATGCACCGATGCACATACCATGCACCGATGCACTGAGGATTTTATGAAAACATCGAATGCATTTG
1 ATGCATCGATGCAC-CACTATGCACCGATGCACTCAGGATTTTATGAAAACATCGAATGCACTTG
* * *
4191990 ATGCATCGATGCACCAGCTATGCATCGATGCACTCTGGCTATTT-TG-AAACATCGAATGCACTT
1 ATGCATCGATGCACCA-CTATGCACCGATGCACTCAGGAT-TTTATGAAAACATCGAATGCACTT
4192053 G
64 G
*
4192054 ATGCATCGATGCACTC-TTAGTGCACCGATGCACT
1 ATGCATCGATGCAC-CACTA-TGCACCGATGCACT
4192088 AAGGGTCCAA
Statistics
Matches: 84, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
63 2 0.02
64 45 0.54
65 34 0.40
66 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (64 bp):
ATGCATCGATGCACCACTATGCACCGATGCACTCAGGATTTTATGAAAACATCGAATGCACTTG
Found at i:4194194 original size:28 final size:27
Alignment explanation
Indices: 4194163--4194256 Score: 66
Period size: 28 Copynumber: 3.2 Consensus size: 27
4194153 TTAATTATAG
4194163 ATTAATTTATAATTTTATAGAAAGACTA
1 ATTAATTTAT-ATTTTATAGAAAGACTA
* *
4194191 ATTAATCTAT-TTAATTATAGAGAGACTA
1 ATTAATTTATATT--TTATAGAAAGACTA
*
4194219 ATTTATATTA-ATTCTTATAATAGAAAGACTA
1 ATTAAT-TTATA-T-TT-T-ATAGAAAGACTA
4194250 GATTAAT
1 -ATTAAT
4194257 ACATTTAATA
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
26 2 0.04
28 27 0.53
29 3 0.06
30 2 0.04
31 12 0.24
32 5 0.10
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (27 bp):
ATTAATTTATATTTTATAGAAAGACTA
Found at i:4194298 original size:60 final size:59
Alignment explanation
Indices: 4194179--4194301 Score: 144
Period size: 60 Copynumber: 2.1 Consensus size: 59
4194169 TTATAATTTT
* * * *
4194179 ATAGAAAGACTAATTAATCTATTTAATTATAGAGAGACTAATTTATATTAATTCTTATA
1 ATAGAAAGACTAATTAATCTATTTAATAATAGAGAGACTAATTTATATCAATCCCTATA
*
4194238 ATAGAAAGACTAGATTAATAC-ATTTAATAATAGA-AGAACTAATTTGA-CTCAATCCCTATA
1 ATAGAAAGACTA-ATTAAT-CTATTTAATAATAGAGAG-ACTAATTT-ATATCAATCCCTATA
4194298 ATAG
1 ATAG
4194302 GGGGACCCTA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
59 14 0.25
60 39 0.71
61 2 0.04
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.35
Consensus pattern (59 bp):
ATAGAAAGACTAATTAATCTATTTAATAATAGAGAGACTAATTTATATCAATCCCTATA
Found at i:4197224 original size:26 final size:27
Alignment explanation
Indices: 4197186--4197240 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 27
4197176 TTATAAGAAA
*
4197186 TTGATTTAGATTTATAAT-TATAATAATT
1 TTGATTTA-ATTTA-AATCTATAACAATT
4197214 TTGATTT-ATTTAAATCTATAACAATT
1 TTGATTTAATTTAAATCTATAACAATT
4197240 T
1 T
4197241 AGAACAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 3 0.12
26 15 0.60
28 7 0.28
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.53
Consensus pattern (27 bp):
TTGATTTAATTTAAATCTATAACAATT
Found at i:4198787 original size:14 final size:14
Alignment explanation
Indices: 4198768--4198795 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4198758 CAAAGGCCAA
4198768 AAACCTTCTTACAT
1 AAACCTTCTTACAT
4198782 AAACCTTCTTACAT
1 AAACCTTCTTACAT
4198796 CTTAAACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (14 bp):
AAACCTTCTTACAT
Found at i:4200817 original size:40 final size:40
Alignment explanation
Indices: 4200732--4200912 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
4200722 GCAGTAATAT
* * *
4200732 ATATTCTAAATGTGTTTTATAAAATAAATTTATACTAGTT-TA
1 ATATTCTAAATGTGTTTTAT-AACT-AATCTATACCA-TTGTA
* *
4200774 ATATTCTAAATATGTTTTATAACTAATCTATACTATTGTA
1 ATATTCTAAATGTGTTTTATAACTAATCTATACCATTGTA
* *
4200814 ATATTCTAAATGTGCTGTATAACTAATCTATACCATTGTA
1 ATATTCTAAATGTGTTTTATAACTAATCTATACCATTGTA
*
4200854 ATATTCTAAATGTGTTGTATAACTAATCTATACCATTGTA
1 ATATTCTAAATGTGTTTTATAACTAATCTATACCATTGTA
4200894 ATATTCTAAATGTGTTTTA
1 ATATTCTAAATGTGTTTTA
4200913 CAAAATAAAC
Statistics
Matches: 129, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 2 0.02
40 105 0.81
41 3 0.02
42 19 0.15
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.45
Consensus pattern (40 bp):
ATATTCTAAATGTGTTTTATAACTAATCTATACCATTGTA
Found at i:4200853 original size:21 final size:21
Alignment explanation
Indices: 4200829--4200893 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
4200819 CTAAATGTGC
4200829 TGTATAACTAATCTATACCAT
1 TGTATAACTAATCTATACCAT
* * ***
4200850 TG--TAA-TATTCTAAATGTGT
1 TGTATAACTAATCTATA-CCAT
4200869 TGTATAACTAATCTATACCAT
1 TGTATAACTAATCTATACCAT
4200890 TGTA
1 TGTA
4200894 ATATTCTAAA
Statistics
Matches: 30, Mismatches: 10, Indels: 8
0.62 0.21 0.17
Matches are distributed among these distances:
18 7 0.23
19 6 0.20
21 10 0.33
22 7 0.23
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (21 bp):
TGTATAACTAATCTATACCAT
Found at i:4201010 original size:81 final size:81
Alignment explanation
Indices: 4200911--4201074 Score: 319
Period size: 81 Copynumber: 2.0 Consensus size: 81
4200901 AAATGTGTTT
4200911 TACAAAATAAACCTGGATTTTGTATTATAGATGTTGATCTGTTCCGTCAAAGCAATGAAGTTCAT
1 TACAAAATAAACCTGGATTTTGTATTATAGATGTTGATCTGTTCCGTCAAAGCAATGAAGTTCAT
4200976 GTACAGGCTTTAAGAG
66 GTACAGGCTTTAAGAG
*
4200992 TACAAAATAAACCTGGATTTTGTATTCTAGATGTTGATCTGTTCCGTCAAAGCAATGAAGTTCAT
1 TACAAAATAAACCTGGATTTTGTATTATAGATGTTGATCTGTTCCGTCAAAGCAATGAAGTTCAT
4201057 GTACAGGCTTTAAGAG
66 GTACAGGCTTTAAGAG
4201073 TA
1 TA
4201075 TCCTCTGATA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.34
Consensus pattern (81 bp):
TACAAAATAAACCTGGATTTTGTATTATAGATGTTGATCTGTTCCGTCAAAGCAATGAAGTTCAT
GTACAGGCTTTAAGAG
Found at i:4202748 original size:17 final size:17
Alignment explanation
Indices: 4202726--4202793 Score: 81
Period size: 17 Copynumber: 4.2 Consensus size: 17
4202716 GACCGGTCAC
*
4202726 GACCCGACCCGATAGTT
1 GACCCGACCCGACAGTT
*
4202743 GACCCGACCCGACCGTT
1 GACCCGACCCGACAGTT
4202760 GACCCGA-CC--C-GTT
1 GACCCGACCCGACAGTT
*
4202773 GACCCGACCCGACCGTT
1 GACCCGACCCGACAGTT
4202790 GACC
1 GACC
4202794 GTTGACTGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
13 10 0.22
14 3 0.07
16 3 0.07
17 29 0.64
ACGTcount: A:0.19, C:0.44, G:0.24, T:0.13
Consensus pattern (17 bp):
GACCCGACCCGACAGTT
Found at i:4202773 original size:13 final size:13
Alignment explanation
Indices: 4202748--4202783 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
4202738 TAGTTGACCC
4202748 GACCCGA-CCGTT
1 GACCCGACCCGTT
4202760 GACCCGACCCGTT
1 GACCCGACCCGTT
4202773 GACCCGACCCG
1 GACCCGACCCG
4202784 ACCGTTGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.17, C:0.47, G:0.25, T:0.11
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:4202843 original size:29 final size:29
Alignment explanation
Indices: 4202800--4202882 Score: 148
Period size: 29 Copynumber: 2.9 Consensus size: 29
4202790 GACCGTTGAC
*
4202800 TGGTGCTATTTTGGTAAATAATTCGGTTT
1 TGGTGCTATTCTGGTAAATAATTCGGTTT
*
4202829 TGGTGCTATTCTGGTAAATAATTCAGTTT
1 TGGTGCTATTCTGGTAAATAATTCGGTTT
4202858 TGGTGCTATTCTGGTAAATAATTCG
1 TGGTGCTATTCTGGTAAATAATTCG
4202883 AAAAAGGGTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.45
Consensus pattern (29 bp):
TGGTGCTATTCTGGTAAATAATTCGGTTT
Found at i:4202895 original size:30 final size:29
Alignment explanation
Indices: 4202830--4202905 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
4202820 ATTCGGTTTT
*****
4202830 GGTGCTATTCTGGTAAATAATTCAGTTTT
1 GGTGCTATTCTGGTAAATAATTCAAAAAG
4202859 GGTGCTATTCTGGTAAATAATTCGAAAAAG
1 GGTGCTATTCTGGTAAATAATTC-AAAAAG
4202889 GGTGCTATT-TGTGTAAA
1 GGTGCTATTCTG-GTAAA
4202906 ATGTTCAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
29 25 0.62
30 15 0.38
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (29 bp):
GGTGCTATTCTGGTAAATAATTCAAAAAG
Found at i:4210006 original size:17 final size:17
Alignment explanation
Indices: 4209984--4210051 Score: 81
Period size: 17 Copynumber: 4.2 Consensus size: 17
4209974 GACCGGTCAC
*
4209984 GACCCGACCCGATAGTT
1 GACCCGACCCGACAGTT
*
4210001 GACCCGACCCGACCGTT
1 GACCCGACCCGACAGTT
4210018 GACCCGA-CC--C-GTT
1 GACCCGACCCGACAGTT
*
4210031 GACCCGACCCGACCGTT
1 GACCCGACCCGACAGTT
4210048 GACC
1 GACC
4210052 GTTGACCGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
13 10 0.22
14 3 0.07
16 3 0.07
17 29 0.64
ACGTcount: A:0.19, C:0.44, G:0.24, T:0.13
Consensus pattern (17 bp):
GACCCGACCCGACAGTT
Found at i:4210031 original size:13 final size:13
Alignment explanation
Indices: 4210006--4210041 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
4209996 TAGTTGACCC
4210006 GACCCGA-CCGTT
1 GACCCGACCCGTT
4210018 GACCCGACCCGTT
1 GACCCGACCCGTT
4210031 GACCCGACCCG
1 GACCCGACCCG
4210042 ACCGTTGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.17, C:0.47, G:0.25, T:0.11
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:4210108 original size:29 final size:29
Alignment explanation
Indices: 4210065--4210147 Score: 148
Period size: 29 Copynumber: 2.9 Consensus size: 29
4210055 GACCGTTGAC
*
4210065 TGGTGCTATTTTGGTAAATAATTCGGTTT
1 TGGTGCTATTCTGGTAAATAATTCGGTTT
*
4210094 TGGTGCTATTCTGGTAAATAATTCAGTTT
1 TGGTGCTATTCTGGTAAATAATTCGGTTT
4210123 TGGTGCTATTCTGGTAAATAATTCG
1 TGGTGCTATTCTGGTAAATAATTCG
4210148 AAAAAGGGTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.45
Consensus pattern (29 bp):
TGGTGCTATTCTGGTAAATAATTCGGTTT
Found at i:4210160 original size:30 final size:29
Alignment explanation
Indices: 4210095--4210170 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
4210085 ATTCGGTTTT
*****
4210095 GGTGCTATTCTGGTAAATAATTCAGTTTT
1 GGTGCTATTCTGGTAAATAATTCAAAAAG
4210124 GGTGCTATTCTGGTAAATAATTCGAAAAAG
1 GGTGCTATTCTGGTAAATAATTC-AAAAAG
4210154 GGTGCTATT-TGTGTAAA
1 GGTGCTATTCTG-GTAAA
4210171 ATGTTCAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
29 25 0.62
30 15 0.38
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (29 bp):
GGTGCTATTCTGGTAAATAATTCAAAAAG
Found at i:4213887 original size:3 final size:3
Alignment explanation
Indices: 4213879--4213909 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
4213869 ATTCTCTCCA
4213879 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
4213910 ATGTACGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:4214880 original size:21 final size:22
Alignment explanation
Indices: 4214856--4214899 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
4214846 TCTTATGTGT
**
4214856 TATGTAAAGTATATATGA-ATA
1 TATGTAAACAATATATGACATA
*
4214877 TATGTGAACAATATATGACATA
1 TATGTAAACAATATATGACATA
4214899 T
1 T
4214900 GTATATAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (22 bp):
TATGTAAACAATATATGACATA
Found at i:4215395 original size:26 final size:26
Alignment explanation
Indices: 4215359--4215426 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
4215349 TTCTTAAGGA
4215359 GTGGTCCTTCGGGACAAATGTGATAT
1 GTGGTCCTTCGGGACAAATGTGATAT
4215385 GTGGTCCTTCGGGACAAATGTGATAT
1 GTGGTCCTTCGGGACAAATGTGATAT
*
4215411 GTGATCCTTCGGGACA
1 GTGGTCCTTCGGGACA
4215427 TTTCTACGCG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (26 bp):
GTGGTCCTTCGGGACAAATGTGATAT
Found at i:4215787 original size:21 final size:21
Alignment explanation
Indices: 4215763--4215813 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
4215753 GATATATGAA
4215763 ATGTTTTATGGTTTTTATTAT
1 ATGTTTTATGGTTTTTATTAT
4215784 ATGTTTTATGGTTTTTATTAT
1 ATGTTTTATGGTTTTTATTAT
4215805 ATGTTTTAT
1 ATGTTTTAT
4215814 ATGCCTCACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.67
Consensus pattern (21 bp):
ATGTTTTATGGTTTTTATTAT
Found at i:4216213 original size:19 final size:21
Alignment explanation
Indices: 4216175--4216220 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
4216165 TATGGTATTG
*
4216175 TTCATACGGTATTGTTTACTA
1 TTCATACCGTATTGTTTACTA
*
4216196 TTCATACCGTA-T-TTTACTG
1 TTCATACCGTATTGTTTACTA
4216215 TTCATA
1 TTCATA
4216221 AAACGTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 12 0.52
20 1 0.04
21 10 0.43
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.48
Consensus pattern (21 bp):
TTCATACCGTATTGTTTACTA
Found at i:4220880 original size:28 final size:28
Alignment explanation
Indices: 4220848--4220910 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
4220838 TTGAATATTT
* *
4220848 ATATTTTTAAAATTATTTACATTTACAA
1 ATATTTATAAAATTATTTAAATTTACAA
4220876 ATATTTATAAAATTATTTAAATTTACAA
1 ATATTTATAAAATTATTTAAATTTACAA
4220904 ATATTTA
1 ATATTTA
4220911 AATATTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (28 bp):
ATATTTATAAAATTATTTAAATTTACAA
Found at i:4220911 original size:16 final size:16
Alignment explanation
Indices: 4220861--4220913 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
4220851 TTTTTAAAAT
*
4220861 TATTTACATTTACAAA
1 TATTTAAATTTACAAA
4220877 TATTT--A--TA-AAA
1 TATTTAAATTTACAAA
4220888 TTATTTAAATTTACAAA
1 -TATTTAAATTTACAAA
4220905 TATTTAAAT
1 TATTTAAAT
4220914 ATTAAATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
11 3 0.10
12 7 0.23
14 2 0.06
16 16 0.52
17 3 0.10
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (16 bp):
TATTTAAATTTACAAA
Found at i:4222657 original size:30 final size:30
Alignment explanation
Indices: 4222616--4222674 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
4222606 ATATAACAAT
4222616 AATGACTCATTGATAAACTGACATTATCAC
1 AATGACTCATTGATAAACTGACATTATCAC
*
4222646 AATGGCTCATTGATAAACTGACATTATCA
1 AATGACTCATTGATAAACTGACATTATCA
4222675 TAATTAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (30 bp):
AATGACTCATTGATAAACTGACATTATCAC
Found at i:4225199 original size:31 final size:31
Alignment explanation
Indices: 4225161--4225219 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
4225151 AATTCTAAAA
* *
4225161 TTTAAATAATATATCAGATATATTTTATTGT
1 TTTAAATAATATATCAAATAAATTTTATTGT
4225192 TTTAAATAATATATCAAATAAATTTTAT
1 TTTAAATAATATATCAAATAAATTTTAT
4225220 AATTTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (31 bp):
TTTAAATAATATATCAAATAAATTTTATTGT
Found at i:4230603 original size:17 final size:18
Alignment explanation
Indices: 4230581--4230621 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
4230571 AGGGTTGAAT
*
4230581 TTTAAAGTGAA-TAATTA
1 TTTAAAGTAAACTAATTA
*
4230598 TTTAAAGTAAACTATTTA
1 TTTAAAGTAAACTAATTA
4230616 TTTAAA
1 TTTAAA
4230622 ATATAGTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (18 bp):
TTTAAAGTAAACTAATTA
Found at i:4233074 original size:20 final size:20
Alignment explanation
Indices: 4233049--4233098 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
4233039 GCGAAATAAA
4233049 AATCGCAACGC-GATCTCCAG
1 AATCGCAACGCAGATC-CCAG
** *
4233069 AATCGCAAATCAGTTCCCAG
1 AATCGCAACGCAGATCCCAG
4233089 AATCGCAACG
1 AATCGCAACG
4233099 TGACAACTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.34, C:0.32, G:0.18, T:0.16
Consensus pattern (20 bp):
AATCGCAACGCAGATCCCAG
Found at i:4235042 original size:19 final size:20
Alignment explanation
Indices: 4235009--4235058 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
4234999 TTTGTGTTCT
4235009 TTTTTTCTTTCGAACAGTCT-C
1 TTTTTT-TTTCGAACAG-CTGC
4235030 TTTTTTTTT-GAACAGCTGC
1 TTTTTTTTTCGAACAGCTGC
4235049 TTTTTTTTTC
1 TTTTTTTTTC
4235059 TTTTTTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 2 0.07
19 16 0.59
20 3 0.11
21 6 0.22
ACGTcount: A:0.12, C:0.18, G:0.10, T:0.60
Consensus pattern (20 bp):
TTTTTTTTTCGAACAGCTGC
Found at i:4235930 original size:13 final size:12
Alignment explanation
Indices: 4235911--4235944 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
4235901 ACTTAATCAG
4235911 AAAAAAAATAAA
1 AAAAAAAATAAA
*
4235923 AGAAAAAATAAA
1 AAAAAAAATAAA
*
4235935 AATAAAAATA
1 AAAAAAAATA
4235945 TAACGGAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (12 bp):
AAAAAAAATAAA
Found at i:4242679 original size:20 final size:20
Alignment explanation
Indices: 4242654--4242706 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
4242644 GATTTTCCAG
4242654 AATCGCAACGC-AA-ATATGAA
1 AATCGCAACGCGAACATAT--A
4242674 AATCGCAACGCGAACATATA
1 AATCGCAACGCGAACATATA
4242694 AATCGCAACGCGA
1 AATCGCAACGCGA
4242707 TTCTGACTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 25 0.81
21 2 0.06
22 4 0.13
ACGTcount: A:0.45, C:0.25, G:0.17, T:0.13
Consensus pattern (20 bp):
AATCGCAACGCGAACATATA
Found at i:4242744 original size:41 final size:40
Alignment explanation
Indices: 4242654--4242926 Score: 298
Period size: 40 Copynumber: 6.8 Consensus size: 40
4242644 GATTTTCCAG
** * * * * **
4242654 AATCGCAACGCAAATATGAAAATCGCAACGCGAACATATA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
* * *
4242694 AATCGCAACGCG-ATTCTG-ACTATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGTA-TCTGTA-AATCGCAACGAGAATACGT-A
* *
4242735 AATCGCAACGCGTATCCGTAAATCGCAACGAAAATACGTAA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-A
* **
4242776 AATCGCAACGTGTATCCATAAATCGCAACGAGAATACGTA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
4242816 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
* * * *
4242856 AATCGCAATGCGTATCCGTAAATCGCAATGACAATACGTAA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-A
*
4242897 AATCGCAACGCGTATCCGTAAATCGCAACG
1 AATCGCAACGCGTATCTGTAAATCGCAACG
4242927 CGATTTTTAA
Statistics
Matches: 201, Mismatches: 26, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.01
40 99 0.49
41 98 0.49
42 2 0.01
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (40 bp):
AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
Found at i:4242758 original size:81 final size:80
Alignment explanation
Indices: 4242673--4242929 Score: 272
Period size: 81 Copynumber: 3.2 Consensus size: 80
4242663 GCAAATATGA
* * * *
4242673 AAATCGCAACGCGAACATATAAATCGCAACGCGATTCTGACTATCGCAACGAGTATCCGTAAAAT
1 AAATCGCAACGCGAAAATATAAATCGCAACGCGATTCTGA-AATCGCAACGAGAATACGTAAAAT
4242738 CGCAACGCGTATCCGT
65 CGCAACGCGTATCCGT
* *
4242754 AAATCGCAA--CGAAAATACGTAAAATCGCAACGTGTATCCAT-AAATCGCAACGAGAATACGT-
1 AAATCGCAACGCGAAAATA--T-AAATCGCAACGCG-ATTC-TGAAATCGCAACGAGAATACGTA
*
4242815 AAATCGCAACGCGTATCTGT
61 AAATCGCAACGCGTATCCGT
* * ** * * * *
4242835 AAATCGCAACGAGAATACGTAAATCGCAATGCG-TATCCGTAAATCGCAATGACAATACGTAAAA
1 AAATCGCAACGCGAAAATATAAATCGCAACGCGAT-TCTG-AAATCGCAACGAGAATACGTAAAA
4242899 TCGCAACGCGTATCCGT
64 TCGCAACGCGTATCCGT
4242916 AAATCGCAACGCGA
1 AAATCGCAACGCGA
4242930 TTTTTAAAGC
Statistics
Matches: 146, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
78 1 0.01
79 8 0.05
80 29 0.20
81 71 0.49
82 28 0.19
83 8 0.05
84 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.19
Consensus pattern (80 bp):
AAATCGCAACGCGAAAATATAAATCGCAACGCGATTCTGAAATCGCAACGAGAATACGTAAAATC
GCAACGCGTATCCGT
Found at i:4242759 original size:20 final size:20
Alignment explanation
Indices: 4242715--4242928 Score: 223
Period size: 20 Copynumber: 10.6 Consensus size: 20
4242705 GATTCTGACT
*
4242715 ATCGCAACGAGTATCCGTAAA
1 ATCGCAACGCGTATCCGT-AA
4242736 ATCGCAACGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
*** *
4242756 ATCGCAACGAAAATACGTAAA
1 ATCGCAACGCGTATCCGT-AA
* *
4242777 ATCGCAACGTGTATCCATAA
1 ATCGCAACGCGTATCCGTAA
* * *
4242797 ATCGCAACGAGAATACGTAA
1 ATCGCAACGCGTATCCGTAA
*
4242817 ATCGCAACGCGTATCTGTAA
1 ATCGCAACGCGTATCCGTAA
* * *
4242837 ATCGCAACGAGAATACGTAA
1 ATCGCAACGCGTATCCGTAA
*
4242857 ATCGCAATGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
* * *
4242877 ATCGCAATGAC-AATACGTAAA
1 ATCGCAACG-CGTATCCGT-AA
4242898 ATCGCAACGCGTATCCGTAA
1 ATCGCAACGCGTATCCGTAA
4242918 ATCGCAACGCG
1 ATCGCAACGCG
4242929 ATTTTTAAAG
Statistics
Matches: 158, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
20 110 0.70
21 48 0.30
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (20 bp):
ATCGCAACGCGTATCCGTAA
Found at i:4242831 original size:40 final size:41
Alignment explanation
Indices: 4242715--4242926 Score: 329
Period size: 41 Copynumber: 5.2 Consensus size: 41
4242705 GATTCTGACT
* *
4242715 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* * *
4242756 ATCGCAACGAAAATACGTAAAATCGCAACGTGTATCCATAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
*
4242797 ATCGCAACGAGAATACGT-AAATCGCAACGCGTATCTGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
*
4242837 ATCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* *
4242877 ATCGCAATGACAATACGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
4242918 ATCGCAACG
1 ATCGCAACG
4242927 CGATTTTTAA
Statistics
Matches: 155, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 73 0.47
41 82 0.53
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.19
Consensus pattern (41 bp):
ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
Found at i:4243511 original size:20 final size:19
Alignment explanation
Indices: 4243486--4243531 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
4243476 TTCTAAACTT
*
4243486 AAAATCGAAACATGAAAATG
1 AAAATCGAAACACG-AAATG
* *
4243506 AAAATCGCAACGCGAAATG
1 AAAATCGAAACACGAAATG
4243525 AAAATCG
1 AAAATCG
4243532 CAACGAGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.54, C:0.15, G:0.17, T:0.13
Consensus pattern (19 bp):
AAAATCGAAACACGAAATG
Found at i:4243525 original size:19 final size:19
Alignment explanation
Indices: 4243501--4243585 Score: 99
Period size: 19 Copynumber: 4.7 Consensus size: 19
4243491 CGAAACATGA
4243501 AAATGAAAATCGCAACGCG
1 AAATGAAAATCGCAACGCG
4243520 AAATGAAAATCGCAA--CG
1 AAATGAAAATCGCAACGCG
* *
4243537 --A-GAGAATCGTAACGCG
1 AAATGAAAATCGCAACGCG
4243553 AAATGAAAATCGCAACGCG
1 AAATGAAAATCGCAACGCG
**
4243572 AAACCAAAATCGCA
1 AAATGAAAATCGCA
4243586 TTGCGATTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
14 9 0.16
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 40 0.73
ACGTcount: A:0.48, C:0.21, G:0.20, T:0.11
Consensus pattern (19 bp):
AAATGAAAATCGCAACGCG
Found at i:4243620 original size:19 final size:19
Alignment explanation
Indices: 4243598--4243679 Score: 119
Period size: 20 Copynumber: 4.2 Consensus size: 19
4243588 GCGATTATGG
4243598 TTTCGCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
*
4243617 TTTCGTGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
4243636 TTTCCGCGTTGCGATTTTCA
1 TTT-CGCGTTGCGATTTTCA
* *
4243656 TTCTCTCGTTGTGATTTTCA
1 TT-TCGCGTTGCGATTTTCA
4243676 TTTC
1 TTTC
4243680 AACCAAAAGA
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
19 23 0.40
20 33 0.58
21 1 0.02
ACGTcount: A:0.10, C:0.21, G:0.18, T:0.51
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTCA
Found at i:4243647 original size:39 final size:40
Alignment explanation
Indices: 4243601--4243679 Score: 126
Period size: 39 Copynumber: 2.0 Consensus size: 40
4243591 ATTATGGTTT
4243601 CGCGTTGCGATTTTCATT-TCGT-GTTGCGATTTTCATTTC
1 CGCGTTGCGATTTTCATTCTC-TCGTTGCGATTTTCATTTC
*
4243640 CGCGTTGCGATTTTCATTCTCTCGTTGTGATTTTCATTTC
1 CGCGTTGCGATTTTCATTCTCTCGTTGCGATTTTCATTTC
4243680 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
39 19 0.51
40 18 0.49
ACGTcount: A:0.10, C:0.22, G:0.19, T:0.49
Consensus pattern (40 bp):
CGCGTTGCGATTTTCATTCTCTCGTTGCGATTTTCATTTC
Found at i:4244795 original size:34 final size:34
Alignment explanation
Indices: 4244752--4244840 Score: 124
Period size: 34 Copynumber: 2.6 Consensus size: 34
4244742 TTTGTTTGAG
4244752 TTTTCATTTTCGCATTGCGATTCACTCGTTGCAA
1 TTTTCATTTTCGCATTGCGATTCACTCGTTGCAA
* *
4244786 TTTTCATTTTCGCATTGCGATTCTCTCGTTGCGA
1 TTTTCATTTTCGCATTGCGATTCACTCGTTGCAA
** * *
4244820 TAGTCATTTCCGCGTTGCGAT
1 TTTTCATTTTCGCATTGCGAT
4244841 AGTCAATTAC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (34 bp):
TTTTCATTTTCGCATTGCGATTCACTCGTTGCAA
Found at i:4244837 original size:20 final size:20
Alignment explanation
Indices: 4244812--4244900 Score: 126
Period size: 20 Copynumber: 4.5 Consensus size: 20
4244802 GCGATTCTCT
4244812 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
* *
4244832 CGTTGCGATAGTCAATTACG
1 CGTTGCGATAGTCATTTCCG
*
4244852 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
4244872 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
4244892 CGTTGCGAT
1 CGTTGCGAT
4244901 TTCCGCGTTG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
20 58 0.97
21 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:4244869 original size:40 final size:40
Alignment explanation
Indices: 4244814--4244900 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
4244804 GATTCTCTCG
4244814 TTGCGATAGTCATTTCCGCGTTGCGATAGTCA-ATTACGCA
1 TTGCGATAGTCATTTCCGCGTTGCGATAGTCATATT-CGCA
* *
4244854 TTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTCGCG
1 TTGCGATAGTCATTTCCGCGTTGCGATAGTCATATTCGCA
4244894 TTGCGAT
1 TTGCGAT
4244901 TTCCGCGTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 41 0.93
41 3 0.07
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.36
Consensus pattern (40 bp):
TTGCGATAGTCATTTCCGCGTTGCGATAGTCATATTCGCA
Found at i:4248181 original size:20 final size:19
Alignment explanation
Indices: 4248160--4248236 Score: 73
Period size: 20 Copynumber: 3.9 Consensus size: 19
4248150 GCGATAGTCA
*
4248160 GAATCTCGTTGCGATTTAC
1 GAATCGCGTTGCGATTTAC
* * *
4248179 AGATTCGCATTGTGATTTAC
1 -GAATCGCGTTGCGATTTAC
* *
4248199 GTATTCGCATTGCGATTTAC
1 G-AATCGCGTTGCGATTTAC
4248219 GTAATCGCGTTGCGATTT
1 G-AATCGCGTTGCGATTT
4248237 TCCTAAATCG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
19 1 0.02
20 48 0.98
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (19 bp):
GAATCGCGTTGCGATTTAC
Found at i:4248247 original size:21 final size:20
Alignment explanation
Indices: 4248168--4248248 Score: 72
Period size: 20 Copynumber: 4.0 Consensus size: 20
4248158 CAGAATCTCG
** *
4248168 TTGCGATTTACAGATTCGCA
1 TTGCGATTTACCTAATCGCA
* * *
4248188 TTGTGATTTACGTATTCGCA
1 TTGCGATTTACCTAATCGCA
* *
4248208 TTGCGATTTACGTAATCGCG
1 TTGCGATTTACCTAATCGCA
*
4248228 TTGCGATTTTCCTAAATCGCA
1 TTGCGATTTACCT-AATCGCA
4248249 ACGCGAATTT
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
20 45 0.88
21 6 0.12
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (20 bp):
TTGCGATTTACCTAATCGCA
Found at i:4248333 original size:20 final size:20
Alignment explanation
Indices: 4248271--4248355 Score: 59
Period size: 19 Copynumber: 4.3 Consensus size: 20
4248261 GAAATCGCAA
4248271 TGCGATAGTCAGA-ATCGCGT
1 TGCGATA-TCAGAGATCGCGT
* * * **
4248291 TGCGA-ATCTGAAAACTGATT
1 TGCGATATCAGAGATC-GCGT
4248311 TGCGATATCAGAGATCGCGT
1 TGCGATATCAGAGATCGCGT
* **
4248331 TGCGA-ATTATCGATCGCGT
1 TGCGATATCAGAGATCGCGT
4248350 TGCGAT
1 TGCGAT
4248356 TTACGGATTC
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
18 4 0.08
19 19 0.39
20 19 0.39
21 7 0.14
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (20 bp):
TGCGATATCAGAGATCGCGT
Found at i:4248369 original size:20 final size:20
Alignment explanation
Indices: 4248325--4248599 Score: 229
Period size: 20 Copynumber: 13.7 Consensus size: 20
4248315 ATATCAGAGA
*
4248325 TCGCGTTGCGAATTATC-GA-
1 TCGCGTTGCGATTTA-CGGAT
4248344 TCGCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGAT
**
4248364 TCGCGTTGCGATTTTACATAT
1 TCGCGTTGCGA-TTTACGGAT
4248385 T-GTCGTTGCGATTTACGGAT
1 TCG-CGTTGCGATTTACGGAT
* * *
4248405 ACGCATTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGGAT
* *
4248425 TCTCGTTGCGATTTACAGAT
1 TCGCGTTGCGATTTACGGAT
* **
4248445 ACGCGTTGCGATTTACATAT
1 TCGCGTTGCGATTTACGGAT
*
4248465 TCTCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGAT
* * *
4248485 ACGCGTTACGATTTTACGTAT
1 TCGCGTTGCGA-TTTACGGAT
4248506 T-GTCGTTGCGATTTACGGAT
1 TCG-CGTTGCGATTTACGGAT
*
4248526 ACGCGTTGCGATTTTACGGAT
1 TCGCGTTGCGA-TTTACGGAT
* * *
4248547 ACTCGTTGCGATAGTTA--GAA
1 TCGCGTTGCGAT--TTACGGAT
* * **
4248567 TCGCGTTACGATTTTCATAT
1 TCGCGTTGCGATTTACGGAT
4248587 TCGCGTTGCGATT
1 TCGCGTTGCGATT
4248600 CTGGAAAATC
Statistics
Matches: 206, Mismatches: 37, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
18 3 0.01
19 16 0.08
20 132 0.64
21 52 0.25
22 3 0.01
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (20 bp):
TCGCGTTGCGATTTACGGAT
Found at i:4248431 original size:40 final size:41
Alignment explanation
Indices: 4248347--4248599 Score: 327
Period size: 41 Copynumber: 6.2 Consensus size: 41
4248337 TTATCGATCG
* * *
4248347 CGTTGCGATTTACGGATTCGCGTTGCGATTTTACATATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
*
4248388 CGTTGCGATTTACGGATACGCATTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
4248428 CGTTGCGATTTACAGATACGCGTTGCGA-TTTACATATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
4248468 CGTTGCGATTTACGGATACGCGTTACGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
4248509 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATACT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* * * *
4248550 CGTTGCGATAGTTA-GAAT-CGCGTTACGATTTT-CATATTCG
1 CGTTGCGAT--TTACGGATACGCGTTGCGATTTTACGTATTCT
4248590 CGTTGCGATT
1 CGTTGCGATT
4248600 CTGGAAAATC
Statistics
Matches: 188, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
40 86 0.46
41 95 0.51
42 3 0.02
43 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (41 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
Found at i:4248594 original size:81 final size:81
Alignment explanation
Indices: 4248344--4248599 Score: 340
Period size: 81 Copynumber: 3.2 Consensus size: 81
4248334 GAATTATCGA
* *
4248344 TCGCGTTGCGATTTACGGATTCGCGTTGCGATTTTACATATTGTCGTTGCGATTTACGGATACGC
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTACATATTCTCGTTGCGATTTACGGATACGC
* * *
4248409 ATTGCGATTTACGTAT
66 GTTACGATTTTCGTAT
* *
4248425 TCTCGTTGCGATTTACAGATACGCGTTGCGA-TTTACATATTCTCGTTGCGATTTACGGATACGC
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTACATATTCTCGTTGCGATTTACGGATACGC
4248489 GTTACGATTTTACGTAT
66 GTTACGATTTT-CGTAT
** * *
4248506 T-GTCGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATACTCGTTGCGATAGTTA-GAAT-
1 TCG-CGTTGCGATTTACGGATACGCGTTGCGATTTTACATATTCTCGTTGCGAT--TTACGGATA
*
4248568 CGCGTTACGATTTTCATAT
63 CGCGTTACGATTTTCGTAT
4248587 TCGCGTTGCGATT
1 TCGCGTTGCGATT
4248600 CTGGAAAATC
Statistics
Matches: 155, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
80 40 0.26
81 76 0.49
82 33 0.21
83 3 0.02
84 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (81 bp):
TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTACATATTCTCGTTGCGATTTACGGATACGC
GTTACGATTTTCGTAT
Found at i:4248617 original size:21 final size:21
Alignment explanation
Indices: 4248593--4248645 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
4248583 ATATTCGCGT
4248593 TGCGATTCTGGAAAATCGCAA
1 TGCGATTCTGGAAAATCGCAA
* ** *
4248614 TGCGAATT-TGTACTATCGCAT
1 TGCG-ATTCTGGAAAATCGCAA
4248635 TGCGATTCTGG
1 TGCGATTCTGG
4248646 GAACTGATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
20 3 0.12
21 19 0.76
22 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (21 bp):
TGCGATTCTGGAAAATCGCAA
Found at i:4248677 original size:20 final size:20
Alignment explanation
Indices: 4248587--4248681 Score: 61
Period size: 20 Copynumber: 4.7 Consensus size: 20
4248577 ATTTTCATAT
* *
4248587 TCGCGTTGCGATTCTGGAAAA
1 TCGCATTGCGATTCTGG-AGA
* * *
4248608 TCGCAATGCGAATT-TGTACTA
1 TCGCATTGCG-ATTCTGGA-GA
4248629 TCGCATTGCGATTCTGG-GA
1 TCGCATTGCGATTCTGGAGA
*
4248648 ACTG-ATTTGCGATTCTGGAGA
1 TC-GCA-TTGCGATTCTGGAGA
*
4248669 TCGCGTTGCGATT
1 TCGCATTGCGATT
4248682 TTTATTTCGC
Statistics
Matches: 57, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
19 3 0.05
20 26 0.46
21 25 0.44
22 3 0.05
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (20 bp):
TCGCATTGCGATTCTGGAGA
Found at i:4250650 original size:24 final size:24
Alignment explanation
Indices: 4250623--4250710 Score: 131
Period size: 24 Copynumber: 3.7 Consensus size: 24
4250613 TTCTATTATA
*
4250623 ATACCTGACCTGGATTCTGATCGG
1 ATACTTGACCTGGATTCTGATCGG
* *
4250647 ATACTTAACCTGGATTCTGATCGA
1 ATACTTGACCTGGATTCTGATCGG
* *
4250671 ATACTTGACCTGGATTTTGATCTG
1 ATACTTGACCTGGATTCTGATCGG
4250695 ATACTTGACCTGGATT
1 ATACTTGACCTGGATT
4250711 ATGTTTTGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (24 bp):
ATACTTGACCTGGATTCTGATCGG
Found at i:4252425 original size:67 final size:66
Alignment explanation
Indices: 4252351--4252475 Score: 189
Period size: 67 Copynumber: 1.9 Consensus size: 66
4252341 TCTCAAACGA
* * *
4252351 GAAAAATTTCAGAATGTCATGGGGGTATCTATTCCCCCTCAG-AGGGGTATCGATACCCCCCTTG
1 GAAAAATTTCAGAATGGCATAGGGGTATCGATTCCCCCT-AGTA-GGGTATCGATACCCCCCTTG
4252415 AAC
64 AAC
*
4252418 GAAAAATTTCAGAATGGCATAGGGGTTTCGATTCCCCCTAGTAGGGTATCGATACCCC
1 GAAAAATTTCAGAATGGCATAGGGGTATCGATTCCCCCTAGTAGGGTATCGATACCCC
4252476 TAAAGGAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
66 17 0.32
67 36 0.68
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (66 bp):
GAAAAATTTCAGAATGGCATAGGGGTATCGATTCCCCCTAGTAGGGTATCGATACCCCCCTTGAA
C
Found at i:4254262 original size:23 final size:23
Alignment explanation
Indices: 4254236--4254303 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 23
4254226 AATCTTATAT
*
4254236 GGCACTTCGGTGCATTTCTATGC
1 GGCACTTCGGTGCATTTCTACGC
* ** * *
4254259 GGCACTACGACGCAATTCTACGT
1 GGCACTTCGGTGCATTTCTACGC
* *
4254282 GGCTCTTCGGTGCATTTATACG
1 GGCACTTCGGTGCATTTCTACG
4254304 AGCTGTGGTG
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.18, C:0.26, G:0.25, T:0.31
Consensus pattern (23 bp):
GGCACTTCGGTGCATTTCTACGC
Found at i:4262119 original size:25 final size:22
Alignment explanation
Indices: 4262091--4262136 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 22
4262081 TTATTTGATT
4262091 TCGCACCCCTTGAGATTTTATAATC
1 TCGCACCCC-T-AGATTTT-TAATC
4262116 TCGCACCCCTAGATTTTTAAT
1 TCGCACCCCTAGATTTTTAAT
4262137 ATAATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.19
23 7 0.33
24 1 0.05
25 9 0.43
ACGTcount: A:0.24, C:0.28, G:0.11, T:0.37
Consensus pattern (22 bp):
TCGCACCCCTAGATTTTTAATC
Found at i:4266208 original size:20 final size:20
Alignment explanation
Indices: 4266165--4266208 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
4266155 CAACGCAATT
* * *
4266165 TTTCGCGTTGCGATTTTCAT
1 TTTCGCGTTGCGAATTTAAG
*
4266185 TTTCGTGTTGCGAATTTAAG
1 TTTCGCGTTGCGAATTTAAG
4266205 TTTC
1 TTTC
4266209 AAAAACTACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.16, G:0.20, T:0.50
Consensus pattern (20 bp):
TTTCGCGTTGCGAATTTAAG
Found at i:4267884 original size:21 final size:21
Alignment explanation
Indices: 4267835--4267903 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
4267825 GTTAAGGGGG
* *
4267835 TTACGTGATGAAGTCAGTGTT
1 TTACGTGATGAGGTCAGTGCT
4267856 TTACGTGATGAGGTCAGTGCT
1 TTACGTGATGAGGTCAGTGCT
** * *
4267877 TTGTGTGATGAGGTCGGTACT
1 TTACGTGATGAGGTCAGTGCT
4267898 TTACGT
1 TTACGT
4267904 AACGACAATG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.19, C:0.12, G:0.32, T:0.38
Consensus pattern (21 bp):
TTACGTGATGAGGTCAGTGCT
Found at i:4268340 original size:21 final size:21
Alignment explanation
Indices: 4268315--4268389 Score: 96
Period size: 21 Copynumber: 3.6 Consensus size: 21
4268305 TTCACCTATC
* *
4268315 ATCGTTTAAGAGGCCCCTCTT
1 ATCGTTCAAGAGGCCCCTCAT
* *
4268336 ATCGTTCAAGAGGCCCATCAC
1 ATCGTTCAAGAGGCCCCTCAT
*
4268357 ATCGTTCAAGAGGCCCCTCCT
1 ATCGTTCAAGAGGCCCCTCAT
*
4268378 ACCGTTCAAGAG
1 ATCGTTCAAGAG
4268390 CCCGATTCAC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (21 bp):
ATCGTTCAAGAGGCCCCTCAT
Found at i:4269927 original size:20 final size:20
Alignment explanation
Indices: 4269881--4269928 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
4269871 CGTTGCAATT
**
4269881 GTTGCGAAAGTCAAATTTGC
1 GTTGCGAAAGTCAAATTCAC
***
4269901 AACGCGAAAGTCAAATTCAC
1 GTTGCGAAAGTCAAATTCAC
4269921 GTTGCGAA
1 GTTGCGAA
4269929 TTCAAGGAAA
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (20 bp):
GTTGCGAAAGTCAAATTCAC
Found at i:4270155 original size:18 final size:18
Alignment explanation
Indices: 4270132--4270167 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
4270122 AAGCCGGTTG
*
4270132 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
4270150 TGATTGCGATTTTGATTT
1 TGATTGCGATTTTGATTT
4270168 CCTTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:4270731 original size:11 final size:11
Alignment explanation
Indices: 4270715--4270740 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4270705 AGCAAATAAA
4270715 ACATAATAATT
1 ACATAATAATT
4270726 ACATAATAATT
1 ACATAATAATT
4270737 ACAT
1 ACAT
4270741 GCCACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.35
Consensus pattern (11 bp):
ACATAATAATT
Found at i:4275954 original size:14 final size:15
Alignment explanation
Indices: 4275920--4275957 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
4275910 TAAATCATTG
4275920 AAAAATTATATATAA
1 AAAAATTATATATAA
*
4275935 ATAAAATTATGTA-AA
1 A-AAAATTATATATAA
4275950 AAAAATTA
1 AAAAATTA
4275958 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
AAAAATTATATATAA
Found at i:4276296 original size:14 final size:14
Alignment explanation
Indices: 4276277--4276306 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4276267 TTTAGATTTT
*
4276277 TTAAAATTACATTA
1 TTAAAAATACATTA
4276291 TTAAAAATACATTA
1 TTAAAAATACATTA
4276305 TT
1 TT
4276307 GATAATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TTAAAAATACATTA
Found at i:4276391 original size:7 final size:7
Alignment explanation
Indices: 4276379--4276434 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
4276369 CATGTGATAT
4276379 GGTTTAG
1 GGTTTAG
4276386 GGTTTAG
1 GGTTTAG
*
4276393 AGTTTAG
1 GGTTTAG
* *
4276400 GATTTAT
1 GGTTTAG
* *
4276407 GATTTAT
1 GGTTTAG
*
4276414 GATTTA-
1 GGTTTAG
4276420 GGTTTAG
1 GGTTTAG
4276427 GGTTTAG
1 GGTTTAG
4276434 G
1 G
4276435 ATTTTAGTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
6 5 0.12
7 38 0.88
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.46
Consensus pattern (7 bp):
GGTTTAG
Found at i:4276399 original size:14 final size:14
Alignment explanation
Indices: 4276380--4276433 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
4276370 ATGTGATATG
*
4276380 GTTTAGGGTTTAGA
1 GTTTAGGATTTAGA
4276394 GTTTAGGATTTATGA
1 GTTTAGGATTTA-GA
*
4276409 -TTTATGATTTAG-
1 GTTTAGGATTTAGA
*
4276421 GTTTAGGGTTTAG
1 GTTTAGGATTTAG
4276434 GATTTTAGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
13 11 0.32
14 21 0.62
15 2 0.06
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (14 bp):
GTTTAGGATTTAGA
Found at i:4278433 original size:24 final size:24
Alignment explanation
Indices: 4278401--4278448 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
4278391 ATTTTTGTAG
4278401 GTTTAAATTCAAGTTTGAGTTCGA
1 GTTTAAATTCAAGTTTGAGTTCGA
* *
4278425 GTTTGAATTCGAGTTTGAGTTCGA
1 GTTTAAATTCAAGTTTGAGTTCGA
4278449 CCTTGAATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.42
Consensus pattern (24 bp):
GTTTAAATTCAAGTTTGAGTTCGA
Found at i:4278454 original size:12 final size:12
Alignment explanation
Indices: 4278412--4278448 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
4278402 TTTAAATTCA
4278412 AGTTTGAGTTCG
1 AGTTTGAGTTCG
*
4278424 AGTTTGAATTCG
1 AGTTTGAGTTCG
4278436 AGTTTGAGTTCG
1 AGTTTGAGTTCG
4278448 A
1 A
4278449 CCTTGAATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.22, C:0.08, G:0.30, T:0.41
Consensus pattern (12 bp):
AGTTTGAGTTCG
Found at i:4278454 original size:24 final size:24
Alignment explanation
Indices: 4278406--4278460 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
4278396 TGTAGGTTTA
* **
4278406 AATTCAAGTTTGAGTTCGAGTTTG
1 AATTCGAGTTTGAGTTCGACCTTG
4278430 AATTCGAGTTTGAGTTCGACCTTG
1 AATTCGAGTTTGAGTTCGACCTTG
4278454 AA-TCGAG
1 AATTCGAG
4278461 CTCAAAATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.36
Consensus pattern (24 bp):
AATTCGAGTTTGAGTTCGACCTTG
Found at i:4278711 original size:20 final size:20
Alignment explanation
Indices: 4278698--4278794 Score: 65
Period size: 20 Copynumber: 4.8 Consensus size: 20
4278688 TTGCAAAATT
4278698 AAAATTCGTGTTGCGAAAAC
1 AAAATTCGTGTTGCGAAAAC
** ** *
4278718 AAAATTCGTACTGCGATTTAG
1 AAAATTCGTGTTGCGA-AAAC
* *
4278739 AAAA-TCTTATTGCGAAAAGC
1 AAAATTCGTGTTGCGAAAA-C
*
4278759 AAACTT-GTGTTGCGAAAA-
1 AAAATTCGTGTTGCGAAAAC
*
4278777 AGAAATTCGCGTTGCGAA
1 A-AAATTCGTGTTGCGAA
4278795 TTCAGAAATT
Statistics
Matches: 57, Mismatches: 15, Indels: 10
0.70 0.18 0.12
Matches are distributed among these distances:
18 1 0.02
19 5 0.09
20 45 0.79
21 6 0.11
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (20 bp):
AAAATTCGTGTTGCGAAAAC
Found at i:4278842 original size:20 final size:20
Alignment explanation
Indices: 4278778--4278941 Score: 111
Period size: 20 Copynumber: 8.0 Consensus size: 20
4278768 TTGCGAAAAA
**
4278778 GAAATTCGCGTTGCGAATTCA
1 GAAA-TCGCGTTGCGAATTTG
* **
4278799 GAAATTGCGTTGCGAATTCA
1 GAAATCGCGTTGCGAATTTG
4278819 GAAATCGCGTTGCGAATTTG
1 GAAATCGCGTTGCGAATTTG
* *
4278839 GAAAATCCCGTTACG-A-TTG
1 G-AAATCGCGTTGCGAATTTG
*
4278858 CAGAAA-CTGAGTTGCGAATTTGG
1 --GAAATC-GCGTTGCGAATTT-G
*
4278881 GAAAATCGCGTTTCGAATTTG
1 G-AAATCGCGTTGCGAATTTG
* *
4278902 GAAA-CTGTGTTGCGAAATTG
1 GAAATC-GCGTTGCGAATTTG
**
4278922 GAGTTCGCGTTGCGAATTTG
1 GAAATCGCGTTGCGAATTTG
4278942 TTGGTCATTT
Statistics
Matches: 114, Mismatches: 18, Indels: 23
0.74 0.12 0.15
Matches are distributed among these distances:
19 5 0.04
20 70 0.61
21 21 0.18
22 16 0.14
23 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (20 bp):
GAAATCGCGTTGCGAATTTG
Found at i:4278862 original size:41 final size:41
Alignment explanation
Indices: 4278777--4278899 Score: 126
Period size: 41 Copynumber: 3.0 Consensus size: 41
4278767 GTTGCGAAAA
** * *
4278777 AGAAATTCGCGTTGCGAATTCAG-AAATTGCGTTGCGAATTC
1 AGAAA-TCGCGTTGCGAATTTGGAAAATCGCGTTACGAATTC
*
4278818 AGAAATCGCGTTGCGAATTTGGAAAATCCCGTTACG-ATTGC
1 AGAAATCGCGTTGCGAATTTGGAAAATCGCGTTACGAATT-C
* *
4278859 AGAAA-CTGAGTTGCGAATTTGGGAAAATCGCGTTTCGAATT
1 AGAAATC-GCGTTGCGAATTT-GGAAAATCGCGTTACGAATT
4278900 TGGAAACTGT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
40 19 0.28
41 33 0.48
42 14 0.20
43 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (41 bp):
AGAAATCGCGTTGCGAATTTGGAAAATCGCGTTACGAATTC
Found at i:4278906 original size:42 final size:41
Alignment explanation
Indices: 4278827--4278922 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 41
4278817 CAGAAATCGC
4278827 GTTGCGAATTT-GGAAAATCCCGTTACGATTGCAGAAACTGA
1 GTTGCGAATTTGGGAAAATCCCGTTACGATTG-AGAAACTGA
* * *
4278868 GTTGCGAATTTGGGAAAATCGCGTTTCGAATTTG-GAAACTGT
1 GTTGCGAATTTGGGAAAATCCCGTTACG-A-TTGAGAAACTGA
*
4278910 GTTGCGAAATTGG
1 GTTGCGAATTTGG
4278923 AGTTCGCGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
41 11 0.23
42 33 0.69
43 1 0.02
44 3 0.06
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (41 bp):
GTTGCGAATTTGGGAAAATCCCGTTACGATTGAGAAACTGA
Found at i:4281569 original size:17 final size:18
Alignment explanation
Indices: 4281544--4281577 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
4281534 ATAATGTATA
4281544 AATATTAATATTATTAAT
1 AATATTAATATTATTAAT
*
4281562 AATA-TAATATTTTTAA
1 AATATTAATATTATTAA
4281578 ATTACTCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATATTAATATTATTAAT
Found at i:4283147 original size:18 final size:18
Alignment explanation
Indices: 4283126--4283162 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
4283116 AAATTTAAAA
4283126 TTATTATATATTTTATAT
1 TTATTATATATTTTATAT
*
4283144 TTATTTTATATTTTATAT
1 TTATTATATATTTTATAT
4283162 T
1 T
4283163 GATAATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTATTATATATTTTATAT
Found at i:4283160 original size:25 final size:25
Alignment explanation
Indices: 4283127--4283175 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
4283117 AATTTAAAAT
*
4283127 TATTATATATT-TTATATTTATTTTA
1 TATTATATATTGATA-ATTTATTTTA
*
4283152 TATTTTATATTGATAATTTATTTT
1 TATTATATATTGATAATTTATTTT
4283176 TATCCCTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (25 bp):
TATTATATATTGATAATTTATTTTA
Found at i:4283173 original size:18 final size:18
Alignment explanation
Indices: 4283132--4283175 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
4283122 AAAATTATTA
* *
4283132 TATATTTTATATTTATTT
1 TATATTTTATATTGATAT
4283150 TATATTTTATATTGATAAT
1 TATATTTTATATTGAT-AT
4283169 T-TATTTT
1 TATATTTT
4283176 TATCCCTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
TATATTTTATATTGATAT
Found at i:4284201 original size:20 final size:21
Alignment explanation
Indices: 4284176--4284227 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
4284166 TTTTCCCAAT
*
4284176 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
4284196 TCGCAATGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
4284217 TCGCAATGCGA
1 TCGCAATGCGA
4284228 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.19
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:4284241 original size:20 final size:20
Alignment explanation
Indices: 4284216--4284350 Score: 103
Period size: 20 Copynumber: 6.7 Consensus size: 20
4284206 AATTGGGAAA
4284216 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
** *
4284236 ATCGCAATGATATACTTACT
1 ATCGCAATGCGATACTGACT
* *
4284256 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
4284277 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
4284297 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
* * *
4284317 TTCGCAACGCGATAAT-ACAT
1 ATCGCAATGCGATACTGAC-T
4284337 AATCGCAATGCGAT
1 -ATCGCAATGCGAT
4284351 TTTCAAAGCG
Statistics
Matches: 92, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.04
20 62 0.67
21 24 0.26
22 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:4284322 original size:61 final size:61
Alignment explanation
Indices: 4284213--4284344 Score: 165
Period size: 61 Copynumber: 2.2 Consensus size: 61
4284203 GCGAATTGGG
* * * * * *
4284213 AAAATCGCAATGCGATACTGACTATCGCAATGATATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGAGATACTGACTATCGCAACGCGATAATAC
* * * *
4284274 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGAGATACTGACTATCGCAACGCGATAATAC
*
4284335 ATAATCGCAA
1 AAAATCGCAA
4284345 TGCGATTTTC
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGAGATACTGACTATCGCAACGCGATAATAC
Found at i:4284546 original size:22 final size:22
Alignment explanation
Indices: 4284518--4284561 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
4284508 CACTCTCTCA
*
4284518 CCCATCTCCGACGAAATTCGTC
1 CCCATCTCCGACGAAATCCGTC
*
4284540 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
4284562 TATCTCCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.43, G:0.16, T:0.20
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:4284878 original size:20 final size:20
Alignment explanation
Indices: 4284824--4284882 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
4284814 GCGATTCTCT
**
4284824 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
4284844 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
4284864 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
4284883 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:4285073 original size:25 final size:26
Alignment explanation
Indices: 4285019--4285073 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
4285009 TGTTTATTAT
*
4285019 TGTTTTTGGTATATCTTCACATTGTA
1 TGTTTTTGGTATATCTTAACATTGTA
4285045 -GTTTTTGGTATATC-TAAC-TTAGTA
1 TGTTTTTGGTATATCTTAACATT-GTA
4285069 TGTTT
1 TGTTT
4285074 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 2 0.08
24 6 0.23
25 18 0.69
ACGTcount: A:0.20, C:0.09, G:0.16, T:0.55
Consensus pattern (26 bp):
TGTTTTTGGTATATCTTAACATTGTA
Found at i:4286223 original size:18 final size:18
Alignment explanation
Indices: 4286202--4286246 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
4286192 TCCACTTCGG
*
4286202 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
4286220 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
4286238 GAGCCATCA
1 GAGCCATCA
4286247 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:4286776 original size:19 final size:20
Alignment explanation
Indices: 4286722--4286777 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
4286712 TAGTTTACTT
* *
4286722 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
4286742 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
*
4286762 TCGCAATGC-GAAATGA
1 TCGCAACGCGGAAATGA
4286778 AAATCGCAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 6 0.19
20 25 0.81
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:4286783 original size:19 final size:19
Alignment explanation
Indices: 4286761--4286857 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
4286751 GGAAATGGCT
4286761 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4286780 ATCGCAAT--G--A-CAAA
1 ATCGCAATGCGAAATGAAA
4286794 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4286813 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
*
4286827 ATCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
4286846 ATCGCAATGCGA
1 ATCGCAATGCGA
4286858 TTTGTGTTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 20
0.72 0.06 0.23
Matches are distributed among these distances:
14 21 0.33
15 2 0.03
16 3 0.05
17 3 0.05
18 2 0.03
19 32 0.51
ACGTcount: A:0.46, C:0.21, G:0.20, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:4286803 original size:33 final size:33
Alignment explanation
Indices: 4286761--4286854 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
4286751 GGAAATGGCT
4286761 ATCGCAATGCGAAATGAAAATCGCAATGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAATGACAAA
*
4286794 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAATGACAAA
*
4286827 ATCGCAACGCGAAATGAAAATCGCAATG
1 ATCGCAATGCGAAATGAAAATCGCAATG
4286855 CGATTTGTGT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.47, C:0.20, G:0.19, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAATGACAAA
Found at i:4286829 original size:14 final size:14
Alignment explanation
Indices: 4286777--4286835 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
4286767 ATGCGAAATG
*
4286777 AAAATCGCAATGAC
1 AAAATCGCAACGAC
*
4286791 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
4286810 AAAATCGCAACGAC
1 AAAATCGCAACGAC
4286824 AAAATCGCAACG
1 AAAATCGCAACG
4286836 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 22 0.59
15 1 0.03
16 1 0.03
17 2 0.05
18 1 0.03
19 10 0.27
ACGTcount: A:0.49, C:0.22, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:4286888 original size:14 final size:14
Alignment explanation
Indices: 4286869--4286958 Score: 72
Period size: 14 Copynumber: 5.8 Consensus size: 14
4286859 TTGTGTTTCG
4286869 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
4286883 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
*
4286899 CGCATTGCGAGTTTGT
1 CG--TTGCGATTTTGT
*
4286915 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
4286932 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
4286948 CGTTGCGATTT
1 CGTTGCGATTT
4286959 GCATTTCGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
14 26 0.43
15 2 0.03
16 12 0.20
17 4 0.07
18 11 0.18
19 6 0.10
ACGTcount: A:0.11, C:0.18, G:0.24, T:0.47
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:4286933 original size:33 final size:33
Alignment explanation
Indices: 4286864--4286971 Score: 182
Period size: 33 Copynumber: 3.3 Consensus size: 33
4286854 GCGATTTGTG
*
4286864 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
*
4286896 TTTCGCATTGCGAGTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
*
4286929 TTTCGCATTGCGATTTTGTCGTTGCGATTTGCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
4286962 TTTCGCATTG
1 TTTCGCATTG
4286972 AGATAGCCAT
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
32 25 0.35
33 46 0.65
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:4287002 original size:20 final size:19
Alignment explanation
Indices: 4286960--4287015 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
4286950 TTGCGATTTG
* *
4286960 CATTTCGCATTGAGATAGC
1 CATTTCGCGTTGCGATAGC
*
4286979 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
4286999 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
4287016 TTTAAGTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 24 0.75
21 3 0.09
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:4287477 original size:41 final size:41
Alignment explanation
Indices: 4287381--4287468 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
4287371 GACTCACCTG
* * *
4287381 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCCCTA
1 TCATCCCTCAAGAGTCCCC-CCCACCGTTCAAGAGGCCACTA
* *
4287423 TCCTCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTG
1 TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
4287464 TCATC
1 TCATC
4287469 GTTGAAGAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 22 0.55
42 18 0.45
ACGTcount: A:0.22, C:0.43, G:0.15, T:0.20
Consensus pattern (41 bp):
TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
Found at i:4288912 original size:14 final size:14
Alignment explanation
Indices: 4288878--4288916 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
4288868 TTTATTGTTT
4288878 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
4288892 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
4288906 TGTTGATTTGT
1 AATTGATTTGT
4288917 TTAATTGGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:4289108 original size:19 final size:19
Alignment explanation
Indices: 4289053--4289101 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
4289043 ATCGCAACGA
*
4289053 GAAAATCGTAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
4289072 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
4289091 GAAAATCGCAA
1 GAAAATCGCAA
4289102 CGAGAAAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.16
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:4289174 original size:20 final size:20
Alignment explanation
Indices: 4289151--4289214 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
4289141 TTTCTAGTTA
4289151 CGATAGCCATTTTCGCGTTG
1 CGATAGCCATTTTCGCGTTG
*** **
4289171 CGATTTTTCA-TTTCGAATTG
1 CGA-TAGCCATTTTCGCGTTG
4289191 CGATAGCCATTTTCGCGTTG
1 CGATAGCCATTTTCGCGTTG
4289211 CGAT
1 CGAT
4289215 TTCCCCGTTG
Statistics
Matches: 32, Mismatches: 10, Indels: 4
0.70 0.22 0.09
Matches are distributed among these distances:
19 3 0.09
20 26 0.81
21 3 0.09
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (20 bp):
CGATAGCCATTTTCGCGTTG
Found at i:4289453 original size:20 final size:20
Alignment explanation
Indices: 4289428--4289477 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
4289418 TTGAAGATGA
4289428 TTGCGATTTTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
***
4289448 TTGCGAAAGTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
4289468 TTGCGATTTT
1 TTGCGATTTT
4289478 GTATTATCTC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (20 bp):
TTGCGATTTTCAGAATCTCG
Found at i:4289771 original size:12 final size:12
Alignment explanation
Indices: 4289752--4289785 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
4289742 CTCTCCGGCG
4289752 ACATCCGTTCCT
1 ACATCCGTTCCT
*
4289764 ATATCCGTTCCT
1 ACATCCGTTCCT
4289776 ACATCC-TTCC
1 ACATCCGTTCC
4289786 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:4290367 original size:24 final size:24
Alignment explanation
Indices: 4290340--4290393 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
4290330 GTATTCAAAA
*
4290340 TTTGATCTTGGTCAATACTCGGAC
1 TTTGATATTGGTCAATACTCGGAC
*
4290364 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACTCGGAC
4290388 TTTGAT
1 TTTGAT
4290394 GATGTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (24 bp):
TTTGATATTGGTCAATACTCGGAC
Found at i:4290585 original size:12 final size:12
Alignment explanation
Indices: 4290568--4290592 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4290558 ATATAATCCT
4290568 GAAGAAGAAAAA
1 GAAGAAGAAAAA
4290580 GAAGAAGAAAAA
1 GAAGAAGAAAAA
4290592 G
1 G
4290593 TCCCCGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:4292838 original size:19 final size:19
Alignment explanation
Indices: 4292816--4292885 Score: 131
Period size: 19 Copynumber: 3.7 Consensus size: 19
4292806 GGAAATTACT
4292816 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
4292835 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
4292854 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4292873 ATCGCAACGCGAA
1 ATCGCAATGCGAA
4292886 TTTAATTTCG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 50 1.00
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:4292903 original size:38 final size:38
Alignment explanation
Indices: 4292796--4292896 Score: 139
Period size: 38 Copynumber: 2.6 Consensus size: 38
4292786 CTTAATGTCT
*
4292796 ATCGCAACGCGGAAATTACTATCGCAATGCGAAATGAAA
1 ATCGCAACGC-GAAATTAATATCGCAATGCGAAATGAAA
* * *
4292835 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATTAATATCGCAATGCGAAATGAAA
* *
4292873 ATCGCAACGCGAATTTAATTTCGC
1 ATCGCAACGCGAAATTAATATCGC
4292897 GTTGCGATTC
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
38 44 0.83
39 9 0.17
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (38 bp):
ATCGCAACGCGAAATTAATATCGCAATGCGAAATGAAA
Found at i:4292932 original size:33 final size:33
Alignment explanation
Indices: 4292881--4292970 Score: 126
Period size: 33 Copynumber: 2.7 Consensus size: 33
4292871 AAATCGCAAC
* *
4292881 GCGAATTTAATTTCGCGTTGCGATTCCCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCCCTCGTT
* *
4292914 GCGATTTTCATTTCGCGTTGTGATTCTCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCCCTCGTT
* *
4292947 GCGATGTTCATTTCGCATTGCGAT
1 GCGATTTTCATTTCGCGTTGCGAT
4292971 AGTACTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.42
Consensus pattern (33 bp):
GCGATTTTCATTTCGCGTTGCGATTCCCTCGTT
Found at i:4293096 original size:14 final size:14
Alignment explanation
Indices: 4293077--4293113 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
4293067 CATCAATTAA
4293077 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
4293091 ACAAATCACCTTTT
1 ACAAATCAACTTTT
4293105 ACAAATCAA
1 ACAAATCAA
4293114 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:4294989 original size:91 final size:90
Alignment explanation
Indices: 4294809--4294993 Score: 291
Period size: 91 Copynumber: 2.0 Consensus size: 90
4294799 ATTTCAAACT
*
4294809 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGC
1 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTAGC
4294874 AGAATTGGCAGCAACCGAATAAATTTAC
63 AGAATTGGCAGCAACCGAATAAATTTAC
4294902 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAGCA
1 TTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCA
* *
4294966 GTATTGTCAGCAACCGAATAAATTTAC
64 GAATTGGCAGCAACCGAATAAATTTAC
4294993 T
1 T
4294994 AAGCAATCTA
Statistics
Matches: 87, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
91 41 0.47
93 19 0.22
95 27 0.31
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (90 bp):
TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGA
ATTGGCAGCAACCGAATAAATTTAC
Found at i:4296723 original size:40 final size:38
Alignment explanation
Indices: 4296679--4296789 Score: 133
Period size: 40 Copynumber: 3.0 Consensus size: 38
4296669 GTCTTTTGGT
4296679 TGAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 TGAAATGAAAATCGCAACG-GA-AATGAGAATCGCAACGC
**
4296719 TGAAATGACTATCGCAAC-G--A-GAGAATCGCAACGC
1 TGAAATGAAAATCGCAACGGAAATGAGAATCGCAACGC
*
4296753 -GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACG
1 TGAAATGAAAATCGCAACG-GAAATGAGAATCGCAACG
4296790 AGAGAATCGC
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
33 15 0.25
34 14 0.23
35 2 0.03
37 1 0.02
38 13 0.21
40 16 0.26
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.14
Consensus pattern (38 bp):
TGAAATGAAAATCGCAACGGAAATGAGAATCGCAACGC
Found at i:4296766 original size:19 final size:19
Alignment explanation
Indices: 4296680--4296825 Score: 141
Period size: 19 Copynumber: 8.1 Consensus size: 19
4296670 TCTTTTGGTT
*
4296680 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
4296699 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
4296719 TGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
4296737 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
4296753 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
4296772 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
4296789 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
4296805 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
4296824 GA
1 GA
4296826 TTTTGGTTTC
Statistics
Matches: 105, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
14 19 0.18
15 2 0.02
16 4 0.04
17 3 0.03
18 3 0.03
19 45 0.43
20 27 0.26
21 2 0.02
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:4296766 original size:33 final size:34
Alignment explanation
Indices: 4296705--4296770 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 34
4296695 ACGAGATAAT
**
4296705 GAGAATCGCAACGCTGAAATGACTATCGCAACGA
1 GAGAATCGCAACGCTGAAATGAAAATCGCAACGA
4296739 GAGAATCGCAACGC-GAAATGAAAATCGCAACG
1 GAGAATCGCAACGCTGAAATGAAAATCGCAACG
4296771 CGAAATGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 16 0.53
34 14 0.47
ACGTcount: A:0.41, C:0.23, G:0.24, T:0.12
Consensus pattern (34 bp):
GAGAATCGCAACGCTGAAATGAAAATCGCAACGA
Found at i:4296789 original size:52 final size:52
Alignment explanation
Indices: 4296688--4296825 Score: 213
Period size: 52 Copynumber: 2.6 Consensus size: 52
4296678 TTGAAATGAA
* * **
4296688 AATCGCAACGAGATAATGAGAATCGCAACGCTGAAATGACTATCGCAACGAGAG
1 AATCGCAACGCGA-AATGAAAATCGCAACGC-GAAATGAAAATCGCAACGAGAG
4296742 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
*
4296794 AATCGCAACGCGAAATGAAAATCGCAATGCGA
1 AATCGCAACGCGAAATGAAAATCGCAACGCGA
4296826 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
52 51 0.65
53 16 0.20
54 12 0.15
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.12
Consensus pattern (52 bp):
AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:4296854 original size:19 final size:19
Alignment explanation
Indices: 4296821--4296887 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
4296811 AAAATCGCAA
**
4296821 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
4296840 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
**
4296859 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
4296879 TGCGATTTT
1 TGCGATTTT
4296888 CATTCTCGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 29 0.71
20 12 0.29
ACGTcount: A:0.10, C:0.16, G:0.25, T:0.48
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:4297419 original size:20 final size:20
Alignment explanation
Indices: 4297394--4297568 Score: 69
Period size: 20 Copynumber: 8.6 Consensus size: 20
4297384 GCTATGTAAA
4297394 TCGCATTGCGATAGTAAGAT
1 TCGCATTGCGATAGTAAGAT
* *
4297414 TCGCATTGCGAT-TTACGTAT
1 TCGCATTGCGATAGTAAG-AT
* *
4297434 TCGCATTGCGAATTA-TAAAAA
1 TCGCATTGCG-A-TAGTAAGAT
**
4297455 TCGCAACGCGAATACGTAA-A-
1 TCGCATTGCG-ATA-GTAAGAT
* * *
4297475 TCGCAATGCGAATTAGGAA-AC
1 TCGCATTGCG-A-TAGTAAGAT
*
4297496 TCGCATTGCGATAGTCAG-T
1 TCGCATTGCGATAGTAAGAT
* **
4297515 ATCCCATTGCGATTTTCCAA-AT
1 -TCGCATTGCGATAGT--AAGAT
*
4297537 TCGCATTGCGATAGTCAG-T
1 TCGCATTGCGATAGTAAGAT
4297556 ATCGCATTGCGAT
1 -TCGCATTGCGAT
4297569 TTACTTATTC
Statistics
Matches: 119, Mismatches: 21, Indels: 30
0.70 0.12 0.18
Matches are distributed among these distances:
19 9 0.08
20 66 0.55
21 36 0.30
22 8 0.07
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (20 bp):
TCGCATTGCGATAGTAAGAT
Found at i:4297505 original size:21 final size:20
Alignment explanation
Indices: 4297434--4297506 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 20
4297424 ATTTACGTAT
* *
4297434 TCGCATTGCGAATTATAAAAA
1 TCGCAATGCGAATTA-GAAAA
* *
4297455 TCGCAACGCGAA-TACGTAAA
1 TCGCAATGCGAATTA-GAAAA
*
4297475 TCGCAATGCGAATTAGGAAAC
1 TCGCAATGCGAATTA-GAAAA
*
4297496 TCGCATTGCGA
1 TCGCAATGCGA
4297507 TAGTCAGTAT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 16 0.39
21 25 0.61
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATTAGAAAA
Found at i:4297526 original size:41 final size:41
Alignment explanation
Indices: 4297481--4297572 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 41
4297471 TAAATCGCAA
**
4297481 TGCGAATTAGGAAACTCGCATTGCGATAGTCAGTATCCCAT
1 TGCGAATTACCAAACTCGCATTGCGATAGTCAGTATCCCAT
* * * *
4297522 TGCGATTTTCCAAATTCGCATTGCGATAGTCAGTATCGCAT
1 TGCGAATTACCAAACTCGCATTGCGATAGTCAGTATCCCAT
*
4297563 TGCGATTTAC
1 TGCGAATTAC
4297573 TTATTCGCAT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (41 bp):
TGCGAATTACCAAACTCGCATTGCGATAGTCAGTATCCCAT
Found at i:4297629 original size:21 final size:22
Alignment explanation
Indices: 4297577--4297629 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
4297567 ATTTACTTAT
*
4297577 TCGCATTTCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
4297598 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
4297619 TCGCATTGCGA
1 TCGCATTGCGA
4297630 TAGTCATAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:4297939 original size:2 final size:2
Alignment explanation
Indices: 4297932--4297959 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4297922 TCATTCTCAC
4297932 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4297960 TTTTTTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4306071 original size:3 final size:3
Alignment explanation
Indices: 4306063--4306089 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
4306053 GAACAAAAAC
4306063 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
4306090 TACAAAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Done.